Multiple sequence alignment - TraesCS7B01G368800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G368800 chr7B 100.000 4082 0 0 1 4082 633004800 633008881 0.000000e+00 7539.0
1 TraesCS7B01G368800 chr7B 91.287 3604 215 44 170 3730 632796523 632792976 0.000000e+00 4824.0
2 TraesCS7B01G368800 chr7B 87.270 707 77 9 170 863 36852162 36851456 0.000000e+00 795.0
3 TraesCS7B01G368800 chr7B 86.872 716 66 13 173 863 25633449 25632737 0.000000e+00 776.0
4 TraesCS7B01G368800 chr7B 85.989 728 77 14 170 872 668451009 668450282 0.000000e+00 756.0
5 TraesCS7B01G368800 chr7B 77.123 730 116 24 170 863 157212673 157211959 3.850000e-100 375.0
6 TraesCS7B01G368800 chr7B 91.600 250 21 0 2161 2410 632710053 632709804 3.020000e-91 346.0
7 TraesCS7B01G368800 chr7B 93.452 168 11 0 5 172 25633761 25633594 2.440000e-62 250.0
8 TraesCS7B01G368800 chr7B 92.982 171 6 2 2 172 632796961 632796797 1.130000e-60 244.0
9 TraesCS7B01G368800 chr7B 100.000 43 0 0 3870 3912 633009309 633009267 3.380000e-11 80.5
10 TraesCS7B01G368800 chr7A 93.912 2858 139 11 888 3730 663575709 663578546 0.000000e+00 4281.0
11 TraesCS7B01G368800 chr7D 92.084 2855 167 21 894 3730 574271440 574274253 0.000000e+00 3965.0
12 TraesCS7B01G368800 chr7D 89.116 294 25 5 2167 2454 573912478 573912186 3.880000e-95 359.0
13 TraesCS7B01G368800 chr7D 84.946 93 12 2 774 865 110589164 110589255 4.340000e-15 93.5
14 TraesCS7B01G368800 chr7D 79.570 93 16 3 3818 3908 18207980 18207889 3.410000e-06 63.9
15 TraesCS7B01G368800 chr7D 94.444 36 2 0 2456 2491 573912153 573912118 5.700000e-04 56.5
16 TraesCS7B01G368800 chr2D 88.951 715 62 12 170 867 641575423 641574709 0.000000e+00 867.0
17 TraesCS7B01G368800 chr4B 88.359 713 67 10 170 866 645293980 645293268 0.000000e+00 843.0
18 TraesCS7B01G368800 chr4B 95.833 168 7 0 5 172 34023978 34023811 5.200000e-69 272.0
19 TraesCS7B01G368800 chr3B 86.835 714 69 12 177 865 564316286 564316999 0.000000e+00 774.0
20 TraesCS7B01G368800 chr3B 86.011 722 72 15 170 863 728998384 728997664 0.000000e+00 747.0
21 TraesCS7B01G368800 chr3B 92.353 170 13 0 2 171 19892400 19892569 4.080000e-60 243.0
22 TraesCS7B01G368800 chr3B 92.045 176 8 2 2 171 24270128 24270303 4.080000e-60 243.0
23 TraesCS7B01G368800 chr5B 90.526 570 50 4 170 736 645045796 645046364 0.000000e+00 750.0
24 TraesCS7B01G368800 chr5D 93.609 266 13 1 3819 4080 377952771 377952506 1.060000e-105 394.0
25 TraesCS7B01G368800 chr1D 77.310 736 112 31 170 867 481679904 481679186 2.300000e-102 383.0
26 TraesCS7B01G368800 chr2A 91.120 259 15 2 3819 4069 678975893 678976151 1.090000e-90 344.0
27 TraesCS7B01G368800 chr1B 95.238 168 8 0 5 172 61020812 61020979 2.420000e-67 267.0
28 TraesCS7B01G368800 chr1B 93.452 168 11 0 5 172 380460636 380460469 2.440000e-62 250.0
29 TraesCS7B01G368800 chr6B 94.083 169 10 0 2 170 124574900 124574732 1.460000e-64 257.0
30 TraesCS7B01G368800 chr6B 92.090 177 7 2 2 172 703220599 703220774 4.080000e-60 243.0
31 TraesCS7B01G368800 chr2B 73.128 748 113 54 173 869 549296873 549296163 1.940000e-43 187.0
32 TraesCS7B01G368800 chr2B 85.714 91 11 2 774 863 19387659 19387748 1.210000e-15 95.3
33 TraesCS7B01G368800 chr2B 91.176 68 5 1 799 865 495927902 495927835 1.560000e-14 91.6
34 TraesCS7B01G368800 chr2B 83.333 90 13 2 774 862 210706408 210706496 9.400000e-12 82.4
35 TraesCS7B01G368800 chrUn 85.119 168 10 6 948 1100 315368529 315368696 1.520000e-34 158.0
36 TraesCS7B01G368800 chrUn 85.119 168 10 5 948 1100 357400953 357400786 1.520000e-34 158.0
37 TraesCS7B01G368800 chrUn 95.349 43 2 0 894 936 315368327 315368369 7.320000e-08 69.4
38 TraesCS7B01G368800 chrUn 95.349 43 2 0 894 936 357401155 357401113 7.320000e-08 69.4
39 TraesCS7B01G368800 chrUn 79.570 93 16 3 3818 3908 352442664 352442573 3.410000e-06 63.9
40 TraesCS7B01G368800 chr1A 82.796 93 14 2 774 865 566370690 566370781 9.400000e-12 82.4
41 TraesCS7B01G368800 chr4A 82.609 92 12 4 774 863 90438730 90438819 1.220000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G368800 chr7B 633004800 633008881 4081 False 7539 7539 100.0000 1 4082 1 chr7B.!!$F1 4081
1 TraesCS7B01G368800 chr7B 632792976 632796961 3985 True 2534 4824 92.1345 2 3730 2 chr7B.!!$R7 3728
2 TraesCS7B01G368800 chr7B 36851456 36852162 706 True 795 795 87.2700 170 863 1 chr7B.!!$R1 693
3 TraesCS7B01G368800 chr7B 668450282 668451009 727 True 756 756 85.9890 170 872 1 chr7B.!!$R5 702
4 TraesCS7B01G368800 chr7B 25632737 25633761 1024 True 513 776 90.1620 5 863 2 chr7B.!!$R6 858
5 TraesCS7B01G368800 chr7B 157211959 157212673 714 True 375 375 77.1230 170 863 1 chr7B.!!$R2 693
6 TraesCS7B01G368800 chr7A 663575709 663578546 2837 False 4281 4281 93.9120 888 3730 1 chr7A.!!$F1 2842
7 TraesCS7B01G368800 chr7D 574271440 574274253 2813 False 3965 3965 92.0840 894 3730 1 chr7D.!!$F2 2836
8 TraesCS7B01G368800 chr2D 641574709 641575423 714 True 867 867 88.9510 170 867 1 chr2D.!!$R1 697
9 TraesCS7B01G368800 chr4B 645293268 645293980 712 True 843 843 88.3590 170 866 1 chr4B.!!$R2 696
10 TraesCS7B01G368800 chr3B 564316286 564316999 713 False 774 774 86.8350 177 865 1 chr3B.!!$F3 688
11 TraesCS7B01G368800 chr3B 728997664 728998384 720 True 747 747 86.0110 170 863 1 chr3B.!!$R1 693
12 TraesCS7B01G368800 chr5B 645045796 645046364 568 False 750 750 90.5260 170 736 1 chr5B.!!$F1 566
13 TraesCS7B01G368800 chr1D 481679186 481679904 718 True 383 383 77.3100 170 867 1 chr1D.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 1130 0.445043 GGGTTGGATTGACGCGTTAC 59.555 55.0 15.53 0.97 0.00 2.50 F
2550 2915 0.536006 GCAGCCACTCTGGACTTGTT 60.536 55.0 0.00 0.00 40.96 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2596 2961 0.324943 TGCTCTGTCTGGGGCTTTAC 59.675 55.0 0.00 0.0 0.0 2.01 R
4020 4405 0.031716 AGTAGAGGCATCCAGGAGCA 60.032 55.0 11.62 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
509 810 1.423541 TGGCTAGGGTTTTCTTGCTGA 59.576 47.619 0.00 0.00 36.16 4.26
632 937 2.440627 GGGTCCGGGGTCATAATTAAGT 59.559 50.000 0.00 0.00 0.00 2.24
644 949 2.754946 AATTAAGTTGACCGGCGAGA 57.245 45.000 9.30 0.00 0.00 4.04
696 1003 3.437795 GGCGGACGTCGAGAAGGA 61.438 66.667 9.92 0.00 42.43 3.36
746 1053 3.111442 GCATTTGCGCCCCAAACG 61.111 61.111 4.18 0.00 45.52 3.60
747 1054 2.432285 CATTTGCGCCCCAAACGG 60.432 61.111 4.18 0.00 45.52 4.44
748 1055 2.598985 ATTTGCGCCCCAAACGGA 60.599 55.556 4.18 0.00 45.52 4.69
749 1056 2.926420 ATTTGCGCCCCAAACGGAC 61.926 57.895 4.18 0.00 45.52 4.79
781 1122 1.611491 GAGCGTTTTGGGTTGGATTGA 59.389 47.619 0.00 0.00 0.00 2.57
789 1130 0.445043 GGGTTGGATTGACGCGTTAC 59.555 55.000 15.53 0.97 0.00 2.50
868 1209 2.423538 CCGTTGAATTTGCTCTAAGGGG 59.576 50.000 0.00 0.00 0.00 4.79
872 1213 1.751351 GAATTTGCTCTAAGGGGGCAC 59.249 52.381 0.00 0.00 35.62 5.01
900 1241 1.221840 GGGACATGTCACCGCATCT 59.778 57.895 26.47 0.00 0.00 2.90
963 1308 0.660488 GACACATGTCACCGCAACAA 59.340 50.000 7.15 0.00 44.18 2.83
973 1318 2.671177 CCGCAACAACGAGAGCCAG 61.671 63.158 0.00 0.00 34.06 4.85
977 1322 1.795768 CAACAACGAGAGCCAGCTAA 58.204 50.000 0.00 0.00 0.00 3.09
991 1339 3.864686 CTAAGCAACGCGCCGCAT 61.865 61.111 20.71 12.47 44.04 4.73
1009 1359 1.047596 ATCAGCTCTCATGTCCGCCT 61.048 55.000 0.00 0.00 0.00 5.52
1283 1645 4.465446 CTCCCTCGGCCTCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1284 1646 3.984186 CTCCCTCGGCCTCTCCCAA 62.984 68.421 0.00 0.00 0.00 4.12
1405 1767 2.483714 CCCTACAACATCCTCATGTCCG 60.484 54.545 0.00 0.00 42.89 4.79
1416 1778 3.731728 ATGTCCGCATGCCTGGGT 61.732 61.111 13.15 0.00 33.37 4.51
1683 2045 2.046285 CGGAATGGGGCACAAGGAC 61.046 63.158 0.00 0.00 0.00 3.85
1722 2084 1.378531 TGATTTCAGCGTATGCCACC 58.621 50.000 2.51 0.00 44.31 4.61
1992 2354 3.840831 AGTACGCATGTGCTGTGAT 57.159 47.368 6.08 0.00 39.77 3.06
2082 2444 1.075374 AGGCTGTTTACAATGCTGGGA 59.925 47.619 0.00 0.00 0.00 4.37
2109 2474 2.373502 TGGTGTGGTGACATGGAATACA 59.626 45.455 0.00 0.00 46.14 2.29
2184 2549 4.811969 TCGTGAAATGGTATGTAGTGGT 57.188 40.909 0.00 0.00 0.00 4.16
2188 2553 5.518847 CGTGAAATGGTATGTAGTGGTGTAG 59.481 44.000 0.00 0.00 0.00 2.74
2190 2555 7.101054 GTGAAATGGTATGTAGTGGTGTAGAA 58.899 38.462 0.00 0.00 0.00 2.10
2286 2651 2.621055 TCACACCCACATTGTTAAGCAC 59.379 45.455 0.00 0.00 0.00 4.40
2304 2669 2.476686 GCACGGGTTTAAAGGTTATCGC 60.477 50.000 0.00 0.00 0.00 4.58
2352 2717 1.377994 CTCCAAGTCAGGCAGGCTT 59.622 57.895 0.00 0.00 44.72 4.35
2355 2720 1.246737 CCAAGTCAGGCAGGCTTTCC 61.247 60.000 0.00 0.00 39.74 3.13
2492 2857 5.550796 ACCAGATGATTGATAGTGGGATCAT 59.449 40.000 0.00 0.00 40.79 2.45
2550 2915 0.536006 GCAGCCACTCTGGACTTGTT 60.536 55.000 0.00 0.00 40.96 2.83
2763 3128 5.830991 TGACAGGGGTAACATAATAATTGGC 59.169 40.000 0.00 0.00 39.74 4.52
2772 3137 4.215109 ACATAATAATTGGCGAAAGGGCT 58.785 39.130 0.00 0.00 42.84 5.19
2917 3282 0.895100 TGTCATGAAAGCACCTGGGC 60.895 55.000 0.00 0.00 0.00 5.36
3070 3435 6.015519 CAGTGATCTAGAAATGGTAGAGGGAG 60.016 46.154 0.00 0.00 30.04 4.30
3123 3490 8.669243 GTCCTGATTCCTTGTAAAATAGAGTTG 58.331 37.037 0.00 0.00 0.00 3.16
3191 3560 7.478667 GTGATAACATAAAGAAACACTGAAGCG 59.521 37.037 0.00 0.00 0.00 4.68
3210 3579 7.756558 TGAAGCGACAGATATATCTACAGATG 58.243 38.462 14.92 5.50 34.85 2.90
3230 3610 6.098124 CAGATGATCTTCAGGAGAAAGGTACT 59.902 42.308 10.90 0.00 38.06 2.73
3231 3611 7.286546 CAGATGATCTTCAGGAGAAAGGTACTA 59.713 40.741 10.90 0.00 38.06 1.82
3232 3612 6.777213 TGATCTTCAGGAGAAAGGTACTAC 57.223 41.667 0.00 0.00 38.06 2.73
3233 3613 6.253758 TGATCTTCAGGAGAAAGGTACTACA 58.746 40.000 0.00 0.00 38.06 2.74
3234 3614 6.724441 TGATCTTCAGGAGAAAGGTACTACAA 59.276 38.462 0.00 0.00 38.06 2.41
3235 3615 6.591750 TCTTCAGGAGAAAGGTACTACAAG 57.408 41.667 0.00 0.00 38.49 3.16
3236 3616 6.312529 TCTTCAGGAGAAAGGTACTACAAGA 58.687 40.000 0.00 0.00 38.49 3.02
3237 3617 6.434652 TCTTCAGGAGAAAGGTACTACAAGAG 59.565 42.308 0.00 0.00 38.49 2.85
3238 3618 5.017490 TCAGGAGAAAGGTACTACAAGAGG 58.983 45.833 0.00 0.00 38.49 3.69
3239 3619 5.017490 CAGGAGAAAGGTACTACAAGAGGA 58.983 45.833 0.00 0.00 38.49 3.71
3240 3620 5.659079 CAGGAGAAAGGTACTACAAGAGGAT 59.341 44.000 0.00 0.00 38.49 3.24
3245 3625 5.941555 AAGGTACTACAAGAGGATTCCTG 57.058 43.478 10.74 0.00 38.49 3.86
3301 3681 1.377536 GTCTTCTCTGCATTGGCCTC 58.622 55.000 3.32 0.00 40.13 4.70
3352 3732 2.698274 TGCTCACCTGAGTGTTACTTCA 59.302 45.455 4.26 0.00 44.83 3.02
3386 3766 4.084066 TGCTGCTTGTTACGTATTGTTCTG 60.084 41.667 0.00 0.00 0.00 3.02
3390 3770 4.319911 GCTTGTTACGTATTGTTCTGGCAA 60.320 41.667 0.00 0.00 0.00 4.52
3391 3771 5.619086 GCTTGTTACGTATTGTTCTGGCAAT 60.619 40.000 0.00 0.00 41.42 3.56
3415 3795 3.979948 TCATTATTTTGCATCCATGGCG 58.020 40.909 6.96 1.14 0.00 5.69
3446 3827 4.516698 CACAGTGAATACTTCAGGCAAGTT 59.483 41.667 0.00 0.00 43.38 2.66
3447 3828 4.757149 ACAGTGAATACTTCAGGCAAGTTC 59.243 41.667 0.00 0.00 43.38 3.01
3458 3839 2.260869 GCAAGTTCGGCTGCTCCAA 61.261 57.895 0.00 0.00 34.01 3.53
3475 3856 2.958355 TCCAAGCTTCTGTTCCCAAAAG 59.042 45.455 0.00 0.00 0.00 2.27
3487 3868 3.425162 TCCCAAAAGAGAAGAGGCTTC 57.575 47.619 0.00 0.00 0.00 3.86
3489 3870 2.040947 CCCAAAAGAGAAGAGGCTTCCT 59.959 50.000 3.71 0.00 36.03 3.36
3527 3911 3.781079 TCAGTTTGAAACCTGTGCTTG 57.219 42.857 4.14 0.00 0.00 4.01
3539 3923 3.055819 ACCTGTGCTTGTGTAGGTCATAG 60.056 47.826 0.00 0.00 39.23 2.23
3542 3926 3.323691 TGTGCTTGTGTAGGTCATAGTGT 59.676 43.478 0.00 0.00 0.00 3.55
3551 3935 6.649141 TGTGTAGGTCATAGTGTTGTGATTTC 59.351 38.462 0.00 0.00 0.00 2.17
3552 3936 6.649141 GTGTAGGTCATAGTGTTGTGATTTCA 59.351 38.462 0.00 0.00 0.00 2.69
3565 3949 8.958043 GTGTTGTGATTTCACTAAATTCTTGTC 58.042 33.333 11.67 0.00 46.55 3.18
3566 3950 8.681806 TGTTGTGATTTCACTAAATTCTTGTCA 58.318 29.630 11.67 0.00 46.55 3.58
3567 3951 9.515020 GTTGTGATTTCACTAAATTCTTGTCAA 57.485 29.630 11.67 0.00 46.55 3.18
3568 3952 9.734620 TTGTGATTTCACTAAATTCTTGTCAAG 57.265 29.630 11.67 6.21 46.55 3.02
3569 3953 7.862372 TGTGATTTCACTAAATTCTTGTCAAGC 59.138 33.333 7.78 0.00 46.55 4.01
3584 3968 1.905354 AAGCCTGCTGCAAGGGAAC 60.905 57.895 11.72 0.48 44.83 3.62
3586 3970 2.338785 GCCTGCTGCAAGGGAACTC 61.339 63.158 11.72 0.00 42.68 3.01
3609 3993 3.821421 AGCTAGTAATTGGGGAAGACG 57.179 47.619 0.00 0.00 0.00 4.18
3610 3994 3.105283 AGCTAGTAATTGGGGAAGACGT 58.895 45.455 0.00 0.00 0.00 4.34
3622 4006 2.612672 GGGAAGACGTAAATTAGCTGGC 59.387 50.000 0.00 0.00 0.00 4.85
3658 4042 2.079925 GCTCCTCTTACAGCCTGTTTG 58.920 52.381 1.02 0.00 0.00 2.93
3711 4096 3.838317 TGCCTACTGAAATCTGTACTGGT 59.162 43.478 0.00 0.00 0.00 4.00
3715 4100 3.914312 ACTGAAATCTGTACTGGTGTCG 58.086 45.455 0.00 0.00 0.00 4.35
3730 4115 2.499205 TCGGGGCGACATTAGCAG 59.501 61.111 0.00 0.00 36.08 4.24
3731 4116 3.272334 CGGGGCGACATTAGCAGC 61.272 66.667 0.00 0.00 36.08 5.25
3732 4117 3.272334 GGGGCGACATTAGCAGCG 61.272 66.667 0.00 0.00 36.08 5.18
3737 4122 3.209429 CGACATTAGCAGCGCAAAG 57.791 52.632 11.47 0.00 0.00 2.77
3738 4123 0.721154 CGACATTAGCAGCGCAAAGA 59.279 50.000 11.47 0.00 0.00 2.52
3739 4124 1.328680 CGACATTAGCAGCGCAAAGAT 59.671 47.619 11.47 0.00 0.00 2.40
3740 4125 2.223112 CGACATTAGCAGCGCAAAGATT 60.223 45.455 11.47 0.00 0.00 2.40
3741 4126 3.103738 GACATTAGCAGCGCAAAGATTG 58.896 45.455 11.47 0.00 0.00 2.67
3742 4127 2.489329 ACATTAGCAGCGCAAAGATTGT 59.511 40.909 11.47 3.47 0.00 2.71
3743 4128 3.689161 ACATTAGCAGCGCAAAGATTGTA 59.311 39.130 11.47 0.00 0.00 2.41
3744 4129 4.336433 ACATTAGCAGCGCAAAGATTGTAT 59.664 37.500 11.47 0.00 0.00 2.29
3745 4130 2.838386 AGCAGCGCAAAGATTGTATG 57.162 45.000 11.47 0.00 0.00 2.39
3746 4131 2.358957 AGCAGCGCAAAGATTGTATGA 58.641 42.857 11.47 0.00 0.00 2.15
3747 4132 2.096496 AGCAGCGCAAAGATTGTATGAC 59.904 45.455 11.47 0.00 0.00 3.06
3748 4133 2.159531 GCAGCGCAAAGATTGTATGACA 60.160 45.455 11.47 0.00 0.00 3.58
3749 4134 3.488047 GCAGCGCAAAGATTGTATGACAT 60.488 43.478 11.47 0.00 0.00 3.06
3750 4135 4.033019 CAGCGCAAAGATTGTATGACATG 58.967 43.478 11.47 0.00 0.00 3.21
3751 4136 2.785477 GCGCAAAGATTGTATGACATGC 59.215 45.455 0.30 0.00 0.00 4.06
3752 4137 3.488047 GCGCAAAGATTGTATGACATGCT 60.488 43.478 0.30 0.00 0.00 3.79
3753 4138 4.665212 CGCAAAGATTGTATGACATGCTT 58.335 39.130 5.09 0.00 0.00 3.91
3754 4139 4.731961 CGCAAAGATTGTATGACATGCTTC 59.268 41.667 5.09 2.69 0.00 3.86
3755 4140 5.039333 GCAAAGATTGTATGACATGCTTCC 58.961 41.667 5.09 0.00 0.00 3.46
3756 4141 5.163581 GCAAAGATTGTATGACATGCTTCCT 60.164 40.000 5.09 0.00 0.00 3.36
3757 4142 6.626623 GCAAAGATTGTATGACATGCTTCCTT 60.627 38.462 5.09 2.94 0.00 3.36
3758 4143 6.690194 AAGATTGTATGACATGCTTCCTTC 57.310 37.500 5.09 0.00 0.00 3.46
3759 4144 5.128919 AGATTGTATGACATGCTTCCTTCC 58.871 41.667 5.09 0.00 0.00 3.46
3760 4145 3.281727 TGTATGACATGCTTCCTTCCC 57.718 47.619 5.09 0.00 0.00 3.97
3761 4146 2.846206 TGTATGACATGCTTCCTTCCCT 59.154 45.455 5.09 0.00 0.00 4.20
3762 4147 2.431954 ATGACATGCTTCCTTCCCTG 57.568 50.000 0.00 0.00 0.00 4.45
3763 4148 1.067295 TGACATGCTTCCTTCCCTGT 58.933 50.000 0.00 0.00 0.00 4.00
3764 4149 1.271543 TGACATGCTTCCTTCCCTGTG 60.272 52.381 0.00 0.00 0.00 3.66
3765 4150 0.773644 ACATGCTTCCTTCCCTGTGT 59.226 50.000 0.00 0.00 0.00 3.72
3766 4151 1.985159 ACATGCTTCCTTCCCTGTGTA 59.015 47.619 0.00 0.00 0.00 2.90
3767 4152 2.578021 ACATGCTTCCTTCCCTGTGTAT 59.422 45.455 0.00 0.00 0.00 2.29
3768 4153 3.209410 CATGCTTCCTTCCCTGTGTATC 58.791 50.000 0.00 0.00 0.00 2.24
3769 4154 1.559682 TGCTTCCTTCCCTGTGTATCC 59.440 52.381 0.00 0.00 0.00 2.59
3770 4155 1.473434 GCTTCCTTCCCTGTGTATCCG 60.473 57.143 0.00 0.00 0.00 4.18
3771 4156 2.108168 CTTCCTTCCCTGTGTATCCGA 58.892 52.381 0.00 0.00 0.00 4.55
3772 4157 1.481871 TCCTTCCCTGTGTATCCGAC 58.518 55.000 0.00 0.00 0.00 4.79
3773 4158 0.102481 CCTTCCCTGTGTATCCGACG 59.898 60.000 0.00 0.00 0.00 5.12
3774 4159 0.527817 CTTCCCTGTGTATCCGACGC 60.528 60.000 0.00 0.00 39.16 5.19
3775 4160 1.252215 TTCCCTGTGTATCCGACGCA 61.252 55.000 0.00 0.00 46.36 5.24
3781 4166 3.786516 TGTGTATCCGACGCATAAGAA 57.213 42.857 0.00 0.00 43.68 2.52
3782 4167 4.112716 TGTGTATCCGACGCATAAGAAA 57.887 40.909 0.00 0.00 43.68 2.52
3783 4168 4.496360 TGTGTATCCGACGCATAAGAAAA 58.504 39.130 0.00 0.00 43.68 2.29
3784 4169 4.930405 TGTGTATCCGACGCATAAGAAAAA 59.070 37.500 0.00 0.00 43.68 1.94
3785 4170 5.583061 TGTGTATCCGACGCATAAGAAAAAT 59.417 36.000 0.00 0.00 43.68 1.82
3786 4171 6.127403 GTGTATCCGACGCATAAGAAAAATC 58.873 40.000 0.00 0.00 38.52 2.17
3787 4172 6.018994 GTGTATCCGACGCATAAGAAAAATCT 60.019 38.462 0.00 0.00 38.52 2.40
3788 4173 6.537301 TGTATCCGACGCATAAGAAAAATCTT 59.463 34.615 0.00 0.00 0.00 2.40
3789 4174 5.464965 TCCGACGCATAAGAAAAATCTTC 57.535 39.130 0.00 0.00 0.00 2.87
3790 4175 4.331717 TCCGACGCATAAGAAAAATCTTCC 59.668 41.667 0.00 0.00 0.00 3.46
3791 4176 4.094294 CCGACGCATAAGAAAAATCTTCCA 59.906 41.667 0.00 0.00 0.00 3.53
3792 4177 5.022021 CGACGCATAAGAAAAATCTTCCAC 58.978 41.667 0.00 0.00 0.00 4.02
3793 4178 5.390461 CGACGCATAAGAAAAATCTTCCACA 60.390 40.000 0.00 0.00 0.00 4.17
3794 4179 5.699839 ACGCATAAGAAAAATCTTCCACAC 58.300 37.500 0.00 0.00 0.00 3.82
3795 4180 5.473504 ACGCATAAGAAAAATCTTCCACACT 59.526 36.000 0.00 0.00 0.00 3.55
3796 4181 6.024049 CGCATAAGAAAAATCTTCCACACTC 58.976 40.000 0.00 0.00 0.00 3.51
3797 4182 6.348458 CGCATAAGAAAAATCTTCCACACTCA 60.348 38.462 0.00 0.00 0.00 3.41
3798 4183 7.370383 GCATAAGAAAAATCTTCCACACTCAA 58.630 34.615 0.00 0.00 0.00 3.02
3799 4184 7.867403 GCATAAGAAAAATCTTCCACACTCAAA 59.133 33.333 0.00 0.00 0.00 2.69
3800 4185 9.748708 CATAAGAAAAATCTTCCACACTCAAAA 57.251 29.630 0.00 0.00 0.00 2.44
3813 4198 8.801882 TCCACACTCAAAAATAAACTATAGGG 57.198 34.615 4.43 0.00 0.00 3.53
3814 4199 8.387813 TCCACACTCAAAAATAAACTATAGGGT 58.612 33.333 4.43 0.00 0.00 4.34
3815 4200 9.675464 CCACACTCAAAAATAAACTATAGGGTA 57.325 33.333 4.43 0.00 0.00 3.69
3817 4202 9.901172 ACACTCAAAAATAAACTATAGGGTAGG 57.099 33.333 4.43 0.00 0.00 3.18
3818 4203 9.338622 CACTCAAAAATAAACTATAGGGTAGGG 57.661 37.037 4.43 0.00 0.00 3.53
3819 4204 8.500238 ACTCAAAAATAAACTATAGGGTAGGGG 58.500 37.037 4.43 0.00 0.00 4.79
3820 4205 8.641498 TCAAAAATAAACTATAGGGTAGGGGA 57.359 34.615 4.43 0.00 0.00 4.81
3821 4206 9.071334 TCAAAAATAAACTATAGGGTAGGGGAA 57.929 33.333 4.43 0.00 0.00 3.97
3822 4207 9.350951 CAAAAATAAACTATAGGGTAGGGGAAG 57.649 37.037 4.43 0.00 0.00 3.46
3823 4208 8.881109 AAAATAAACTATAGGGTAGGGGAAGA 57.119 34.615 4.43 0.00 0.00 2.87
3824 4209 8.881109 AAATAAACTATAGGGTAGGGGAAGAA 57.119 34.615 4.43 0.00 0.00 2.52
3825 4210 8.881109 AATAAACTATAGGGTAGGGGAAGAAA 57.119 34.615 4.43 0.00 0.00 2.52
3826 4211 8.881109 ATAAACTATAGGGTAGGGGAAGAAAA 57.119 34.615 4.43 0.00 0.00 2.29
3827 4212 7.782695 AAACTATAGGGTAGGGGAAGAAAAT 57.217 36.000 4.43 0.00 0.00 1.82
3828 4213 7.390013 AACTATAGGGTAGGGGAAGAAAATC 57.610 40.000 4.43 0.00 0.00 2.17
3829 4214 6.704792 ACTATAGGGTAGGGGAAGAAAATCT 58.295 40.000 4.43 0.00 0.00 2.40
3830 4215 7.147195 ACTATAGGGTAGGGGAAGAAAATCTT 58.853 38.462 4.43 0.00 39.87 2.40
3831 4216 8.302102 ACTATAGGGTAGGGGAAGAAAATCTTA 58.698 37.037 4.43 0.00 36.73 2.10
3832 4217 9.340223 CTATAGGGTAGGGGAAGAAAATCTTAT 57.660 37.037 0.00 0.00 36.73 1.73
3834 4219 7.390013 AGGGTAGGGGAAGAAAATCTTATAC 57.610 40.000 0.00 0.00 36.73 1.47
3835 4220 6.042897 AGGGTAGGGGAAGAAAATCTTATACG 59.957 42.308 0.00 0.00 36.73 3.06
3836 4221 6.042437 GGGTAGGGGAAGAAAATCTTATACGA 59.958 42.308 0.00 0.00 36.73 3.43
3837 4222 6.927936 GGTAGGGGAAGAAAATCTTATACGAC 59.072 42.308 0.00 0.00 36.73 4.34
3838 4223 5.926663 AGGGGAAGAAAATCTTATACGACC 58.073 41.667 0.00 0.00 36.73 4.79
3839 4224 5.427481 AGGGGAAGAAAATCTTATACGACCA 59.573 40.000 0.00 0.00 36.73 4.02
3840 4225 5.758784 GGGGAAGAAAATCTTATACGACCAG 59.241 44.000 0.00 0.00 36.73 4.00
3841 4226 5.758784 GGGAAGAAAATCTTATACGACCAGG 59.241 44.000 0.00 0.00 36.73 4.45
3842 4227 6.346896 GGAAGAAAATCTTATACGACCAGGT 58.653 40.000 0.00 0.00 36.73 4.00
3843 4228 6.479331 GGAAGAAAATCTTATACGACCAGGTC 59.521 42.308 9.92 9.92 36.73 3.85
3844 4229 6.040878 AAGAAAATCTTATACGACCAGGTCG 58.959 40.000 35.77 35.77 46.77 4.79
3853 4238 2.836944 GACCAGGTCGTACAAAGCC 58.163 57.895 3.05 0.00 0.00 4.35
3854 4239 1.005394 ACCAGGTCGTACAAAGCCG 60.005 57.895 0.00 0.00 0.00 5.52
3855 4240 1.290955 CCAGGTCGTACAAAGCCGA 59.709 57.895 0.00 0.00 0.00 5.54
3856 4241 0.108329 CCAGGTCGTACAAAGCCGAT 60.108 55.000 0.00 0.00 35.30 4.18
3857 4242 1.674817 CCAGGTCGTACAAAGCCGATT 60.675 52.381 0.00 0.00 35.30 3.34
3858 4243 1.393539 CAGGTCGTACAAAGCCGATTG 59.606 52.381 0.00 0.00 35.30 2.67
3859 4244 1.001633 AGGTCGTACAAAGCCGATTGT 59.998 47.619 5.59 5.59 45.14 2.71
3860 4245 1.127951 GGTCGTACAAAGCCGATTGTG 59.872 52.381 9.64 0.00 43.13 3.33
3861 4246 2.063266 GTCGTACAAAGCCGATTGTGA 58.937 47.619 9.64 0.00 43.13 3.58
3862 4247 2.092211 GTCGTACAAAGCCGATTGTGAG 59.908 50.000 9.64 4.81 43.13 3.51
3863 4248 2.029739 TCGTACAAAGCCGATTGTGAGA 60.030 45.455 9.64 6.59 43.13 3.27
3864 4249 2.092211 CGTACAAAGCCGATTGTGAGAC 59.908 50.000 9.64 1.33 43.13 3.36
3865 4250 1.523758 ACAAAGCCGATTGTGAGACC 58.476 50.000 0.00 0.00 41.78 3.85
3866 4251 0.804989 CAAAGCCGATTGTGAGACCC 59.195 55.000 0.00 0.00 0.00 4.46
3867 4252 0.693049 AAAGCCGATTGTGAGACCCT 59.307 50.000 0.00 0.00 0.00 4.34
3868 4253 0.250513 AAGCCGATTGTGAGACCCTC 59.749 55.000 0.00 0.00 0.00 4.30
3869 4254 0.616111 AGCCGATTGTGAGACCCTCT 60.616 55.000 0.00 0.00 0.00 3.69
3870 4255 0.250513 GCCGATTGTGAGACCCTCTT 59.749 55.000 0.00 0.00 0.00 2.85
3871 4256 1.740718 GCCGATTGTGAGACCCTCTTC 60.741 57.143 0.00 0.00 0.00 2.87
3872 4257 1.827969 CCGATTGTGAGACCCTCTTCT 59.172 52.381 0.00 0.00 0.00 2.85
3873 4258 2.417924 CCGATTGTGAGACCCTCTTCTG 60.418 54.545 0.00 0.00 0.00 3.02
3874 4259 2.417924 CGATTGTGAGACCCTCTTCTGG 60.418 54.545 0.00 0.00 0.00 3.86
3875 4260 2.398754 TTGTGAGACCCTCTTCTGGA 57.601 50.000 0.00 0.00 0.00 3.86
3876 4261 2.630889 TGTGAGACCCTCTTCTGGAT 57.369 50.000 0.00 0.00 0.00 3.41
3877 4262 2.182827 TGTGAGACCCTCTTCTGGATG 58.817 52.381 0.00 0.00 0.00 3.51
3878 4263 2.183679 GTGAGACCCTCTTCTGGATGT 58.816 52.381 0.00 0.00 0.00 3.06
3879 4264 2.093764 GTGAGACCCTCTTCTGGATGTG 60.094 54.545 0.00 0.00 0.00 3.21
3880 4265 2.225369 TGAGACCCTCTTCTGGATGTGA 60.225 50.000 0.00 0.00 0.00 3.58
3881 4266 2.167487 GAGACCCTCTTCTGGATGTGAC 59.833 54.545 0.00 0.00 0.00 3.67
3882 4267 1.902508 GACCCTCTTCTGGATGTGACA 59.097 52.381 0.00 0.00 0.00 3.58
3883 4268 1.625818 ACCCTCTTCTGGATGTGACAC 59.374 52.381 0.00 0.00 0.00 3.67
3884 4269 1.065854 CCCTCTTCTGGATGTGACACC 60.066 57.143 2.45 0.00 0.00 4.16
3885 4270 1.905215 CCTCTTCTGGATGTGACACCT 59.095 52.381 2.45 0.00 0.00 4.00
3886 4271 2.354503 CCTCTTCTGGATGTGACACCTG 60.355 54.545 2.45 0.00 0.00 4.00
3887 4272 1.625315 TCTTCTGGATGTGACACCTGG 59.375 52.381 2.45 0.00 0.00 4.45
3888 4273 0.036732 TTCTGGATGTGACACCTGGC 59.963 55.000 2.45 0.00 0.00 4.85
3889 4274 1.742880 CTGGATGTGACACCTGGCG 60.743 63.158 2.45 0.00 0.00 5.69
3890 4275 2.171209 CTGGATGTGACACCTGGCGA 62.171 60.000 2.45 0.00 0.00 5.54
3891 4276 1.221840 GGATGTGACACCTGGCGAT 59.778 57.895 2.45 0.00 0.00 4.58
3892 4277 0.464036 GGATGTGACACCTGGCGATA 59.536 55.000 2.45 0.00 0.00 2.92
3893 4278 1.571919 GATGTGACACCTGGCGATAC 58.428 55.000 2.45 0.00 0.00 2.24
3894 4279 0.179111 ATGTGACACCTGGCGATACG 60.179 55.000 2.45 0.00 0.00 3.06
3895 4280 1.245376 TGTGACACCTGGCGATACGA 61.245 55.000 2.45 0.00 0.00 3.43
3896 4281 0.108992 GTGACACCTGGCGATACGAA 60.109 55.000 0.00 0.00 0.00 3.85
3897 4282 0.821517 TGACACCTGGCGATACGAAT 59.178 50.000 0.00 0.00 0.00 3.34
3898 4283 1.202371 TGACACCTGGCGATACGAATC 60.202 52.381 0.00 0.00 0.00 2.52
3899 4284 0.104304 ACACCTGGCGATACGAATCC 59.896 55.000 0.00 0.00 0.00 3.01
3900 4285 0.389391 CACCTGGCGATACGAATCCT 59.611 55.000 0.00 0.00 0.00 3.24
3901 4286 1.611977 CACCTGGCGATACGAATCCTA 59.388 52.381 0.00 0.00 0.00 2.94
3902 4287 2.035449 CACCTGGCGATACGAATCCTAA 59.965 50.000 0.00 0.00 0.00 2.69
3903 4288 2.696707 ACCTGGCGATACGAATCCTAAA 59.303 45.455 0.00 0.00 0.00 1.85
3904 4289 3.243771 ACCTGGCGATACGAATCCTAAAG 60.244 47.826 0.00 0.00 0.00 1.85
3905 4290 2.731976 CTGGCGATACGAATCCTAAAGC 59.268 50.000 0.00 0.00 0.00 3.51
3906 4291 2.101750 TGGCGATACGAATCCTAAAGCA 59.898 45.455 0.00 0.00 0.00 3.91
3907 4292 2.731976 GGCGATACGAATCCTAAAGCAG 59.268 50.000 0.00 0.00 0.00 4.24
3908 4293 2.155924 GCGATACGAATCCTAAAGCAGC 59.844 50.000 0.00 0.00 0.00 5.25
3909 4294 3.381045 CGATACGAATCCTAAAGCAGCA 58.619 45.455 0.00 0.00 0.00 4.41
3910 4295 3.426859 CGATACGAATCCTAAAGCAGCAG 59.573 47.826 0.00 0.00 0.00 4.24
3911 4296 1.373570 ACGAATCCTAAAGCAGCAGC 58.626 50.000 0.00 0.00 42.56 5.25
3912 4297 0.659957 CGAATCCTAAAGCAGCAGCC 59.340 55.000 0.00 0.00 43.56 4.85
3913 4298 1.028130 GAATCCTAAAGCAGCAGCCC 58.972 55.000 0.00 0.00 43.56 5.19
3914 4299 0.749454 AATCCTAAAGCAGCAGCCCG 60.749 55.000 0.00 0.00 43.56 6.13
3915 4300 1.915078 ATCCTAAAGCAGCAGCCCGT 61.915 55.000 0.00 0.00 43.56 5.28
3916 4301 2.109126 CCTAAAGCAGCAGCCCGTC 61.109 63.158 0.00 0.00 43.56 4.79
3917 4302 2.046314 TAAAGCAGCAGCCCGTCC 60.046 61.111 0.00 0.00 43.56 4.79
3918 4303 3.622060 TAAAGCAGCAGCCCGTCCC 62.622 63.158 0.00 0.00 43.56 4.46
3922 4307 2.825836 CAGCAGCCCGTCCCATTC 60.826 66.667 0.00 0.00 0.00 2.67
3923 4308 4.115199 AGCAGCCCGTCCCATTCC 62.115 66.667 0.00 0.00 0.00 3.01
3925 4310 4.506255 CAGCCCGTCCCATTCCCC 62.506 72.222 0.00 0.00 0.00 4.81
3930 4315 4.547367 CGTCCCATTCCCCGCCTC 62.547 72.222 0.00 0.00 0.00 4.70
3931 4316 3.090532 GTCCCATTCCCCGCCTCT 61.091 66.667 0.00 0.00 0.00 3.69
3932 4317 2.768344 TCCCATTCCCCGCCTCTC 60.768 66.667 0.00 0.00 0.00 3.20
3933 4318 3.878667 CCCATTCCCCGCCTCTCC 61.879 72.222 0.00 0.00 0.00 3.71
3934 4319 4.241555 CCATTCCCCGCCTCTCCG 62.242 72.222 0.00 0.00 0.00 4.63
3935 4320 3.470888 CATTCCCCGCCTCTCCGT 61.471 66.667 0.00 0.00 0.00 4.69
3936 4321 2.687566 ATTCCCCGCCTCTCCGTT 60.688 61.111 0.00 0.00 0.00 4.44
3937 4322 2.732619 ATTCCCCGCCTCTCCGTTC 61.733 63.158 0.00 0.00 0.00 3.95
3941 4326 3.702048 CCGCCTCTCCGTTCCCAA 61.702 66.667 0.00 0.00 0.00 4.12
3942 4327 2.345991 CGCCTCTCCGTTCCCAAA 59.654 61.111 0.00 0.00 0.00 3.28
3943 4328 1.078426 CGCCTCTCCGTTCCCAAAT 60.078 57.895 0.00 0.00 0.00 2.32
3944 4329 1.090052 CGCCTCTCCGTTCCCAAATC 61.090 60.000 0.00 0.00 0.00 2.17
3945 4330 0.748367 GCCTCTCCGTTCCCAAATCC 60.748 60.000 0.00 0.00 0.00 3.01
3946 4331 0.462047 CCTCTCCGTTCCCAAATCCG 60.462 60.000 0.00 0.00 0.00 4.18
3947 4332 0.462047 CTCTCCGTTCCCAAATCCGG 60.462 60.000 0.00 0.00 41.75 5.14
3948 4333 0.905809 TCTCCGTTCCCAAATCCGGA 60.906 55.000 6.61 6.61 46.44 5.14
3949 4334 2.303043 TCCGTTCCCAAATCCGGAT 58.697 52.632 12.38 12.38 43.99 4.18
3950 4335 0.621609 TCCGTTCCCAAATCCGGATT 59.378 50.000 24.27 24.27 43.99 3.01
3951 4336 1.004979 TCCGTTCCCAAATCCGGATTT 59.995 47.619 32.22 32.22 43.99 2.17
3952 4337 1.404035 CCGTTCCCAAATCCGGATTTC 59.596 52.381 34.39 22.97 43.01 2.17
3953 4338 1.404035 CGTTCCCAAATCCGGATTTCC 59.596 52.381 34.39 19.79 38.84 3.13
3954 4339 2.735151 GTTCCCAAATCCGGATTTCCT 58.265 47.619 34.39 16.11 38.84 3.36
3955 4340 3.683281 CGTTCCCAAATCCGGATTTCCTA 60.683 47.826 34.39 21.06 38.84 2.94
3956 4341 3.570912 TCCCAAATCCGGATTTCCTAC 57.429 47.619 34.39 0.00 38.84 3.18
3957 4342 2.173996 TCCCAAATCCGGATTTCCTACC 59.826 50.000 34.39 0.00 38.84 3.18
3958 4343 2.092103 CCCAAATCCGGATTTCCTACCA 60.092 50.000 34.39 0.00 38.84 3.25
3959 4344 3.626222 CCCAAATCCGGATTTCCTACCAA 60.626 47.826 34.39 0.00 38.84 3.67
3960 4345 3.632145 CCAAATCCGGATTTCCTACCAAG 59.368 47.826 34.39 21.72 38.84 3.61
3961 4346 4.270008 CAAATCCGGATTTCCTACCAAGT 58.730 43.478 34.39 11.73 38.84 3.16
3962 4347 4.586306 AATCCGGATTTCCTACCAAGTT 57.414 40.909 24.27 0.00 0.00 2.66
3963 4348 3.622166 TCCGGATTTCCTACCAAGTTC 57.378 47.619 0.00 0.00 0.00 3.01
3964 4349 2.907696 TCCGGATTTCCTACCAAGTTCA 59.092 45.455 0.00 0.00 0.00 3.18
3965 4350 3.328343 TCCGGATTTCCTACCAAGTTCAA 59.672 43.478 0.00 0.00 0.00 2.69
3966 4351 4.018779 TCCGGATTTCCTACCAAGTTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
3967 4352 4.335594 CCGGATTTCCTACCAAGTTCAATC 59.664 45.833 0.00 0.00 0.00 2.67
3968 4353 5.186198 CGGATTTCCTACCAAGTTCAATCT 58.814 41.667 0.00 0.00 0.00 2.40
3969 4354 5.294552 CGGATTTCCTACCAAGTTCAATCTC 59.705 44.000 0.00 0.00 0.00 2.75
3970 4355 6.418946 GGATTTCCTACCAAGTTCAATCTCT 58.581 40.000 0.00 0.00 0.00 3.10
3971 4356 6.540551 GGATTTCCTACCAAGTTCAATCTCTC 59.459 42.308 0.00 0.00 0.00 3.20
3972 4357 5.422214 TTCCTACCAAGTTCAATCTCTCC 57.578 43.478 0.00 0.00 0.00 3.71
3973 4358 4.425772 TCCTACCAAGTTCAATCTCTCCA 58.574 43.478 0.00 0.00 0.00 3.86
3974 4359 4.223032 TCCTACCAAGTTCAATCTCTCCAC 59.777 45.833 0.00 0.00 0.00 4.02
3975 4360 4.223923 CCTACCAAGTTCAATCTCTCCACT 59.776 45.833 0.00 0.00 0.00 4.00
3976 4361 4.713792 ACCAAGTTCAATCTCTCCACTT 57.286 40.909 0.00 0.00 0.00 3.16
3977 4362 4.646572 ACCAAGTTCAATCTCTCCACTTC 58.353 43.478 0.00 0.00 0.00 3.01
3978 4363 3.681897 CCAAGTTCAATCTCTCCACTTCG 59.318 47.826 0.00 0.00 0.00 3.79
3979 4364 2.966050 AGTTCAATCTCTCCACTTCGC 58.034 47.619 0.00 0.00 0.00 4.70
3980 4365 2.003301 GTTCAATCTCTCCACTTCGCC 58.997 52.381 0.00 0.00 0.00 5.54
3981 4366 0.173481 TCAATCTCTCCACTTCGCCG 59.827 55.000 0.00 0.00 0.00 6.46
3982 4367 1.153549 AATCTCTCCACTTCGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
3983 4368 2.579684 AATCTCTCCACTTCGCCGCC 62.580 60.000 0.00 0.00 0.00 6.13
4029 4414 4.147449 CACGGCGATGCTCCTGGA 62.147 66.667 16.62 0.00 0.00 3.86
4030 4415 3.157252 ACGGCGATGCTCCTGGAT 61.157 61.111 16.62 0.00 0.00 3.41
4031 4416 2.664185 CGGCGATGCTCCTGGATG 60.664 66.667 0.00 0.00 0.00 3.51
4032 4417 2.976903 GGCGATGCTCCTGGATGC 60.977 66.667 0.00 4.00 0.00 3.91
4033 4418 2.976903 GCGATGCTCCTGGATGCC 60.977 66.667 13.24 0.30 0.00 4.40
4034 4419 2.827423 CGATGCTCCTGGATGCCT 59.173 61.111 13.24 5.88 0.00 4.75
4035 4420 1.301558 CGATGCTCCTGGATGCCTC 60.302 63.158 13.24 11.98 0.00 4.70
4036 4421 1.756408 CGATGCTCCTGGATGCCTCT 61.756 60.000 13.24 1.93 0.00 3.69
4037 4422 1.346062 GATGCTCCTGGATGCCTCTA 58.654 55.000 13.24 0.00 0.00 2.43
4038 4423 1.001860 GATGCTCCTGGATGCCTCTAC 59.998 57.143 13.24 1.16 0.00 2.59
4039 4424 0.031716 TGCTCCTGGATGCCTCTACT 60.032 55.000 13.24 0.00 0.00 2.57
4040 4425 1.127343 GCTCCTGGATGCCTCTACTT 58.873 55.000 0.00 0.00 0.00 2.24
4041 4426 1.202627 GCTCCTGGATGCCTCTACTTG 60.203 57.143 0.00 0.00 0.00 3.16
4042 4427 0.833287 TCCTGGATGCCTCTACTTGC 59.167 55.000 0.00 0.00 0.00 4.01
4043 4428 0.531532 CCTGGATGCCTCTACTTGCG 60.532 60.000 0.00 0.00 0.00 4.85
4044 4429 0.531532 CTGGATGCCTCTACTTGCGG 60.532 60.000 0.00 0.00 0.00 5.69
4045 4430 1.889573 GGATGCCTCTACTTGCGGC 60.890 63.158 0.00 0.00 46.22 6.53
4048 4433 2.820037 GCCTCTACTTGCGGCACC 60.820 66.667 0.05 0.00 45.40 5.01
4049 4434 2.509336 CCTCTACTTGCGGCACCG 60.509 66.667 0.05 4.30 43.09 4.94
4070 4455 3.508840 GCGCACTATGCCCACACC 61.509 66.667 0.30 0.00 41.12 4.16
4071 4456 3.195002 CGCACTATGCCCACACCG 61.195 66.667 0.00 0.00 41.12 4.94
4072 4457 3.508840 GCACTATGCCCACACCGC 61.509 66.667 0.00 0.00 37.42 5.68
4073 4458 2.046411 CACTATGCCCACACCGCA 60.046 61.111 0.00 0.00 41.28 5.69
4075 4460 1.153168 ACTATGCCCACACCGCATC 60.153 57.895 0.00 0.00 43.42 3.91
4076 4461 1.893808 CTATGCCCACACCGCATCC 60.894 63.158 0.00 0.00 43.42 3.51
4077 4462 3.414136 TATGCCCACACCGCATCCC 62.414 63.158 0.00 0.00 43.42 3.85
4079 4464 4.740822 GCCCACACCGCATCCCTT 62.741 66.667 0.00 0.00 0.00 3.95
4080 4465 2.994699 CCCACACCGCATCCCTTA 59.005 61.111 0.00 0.00 0.00 2.69
4081 4466 1.531748 CCCACACCGCATCCCTTAT 59.468 57.895 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.367023 GTGGTGCGCGAGTGGGTA 62.367 66.667 12.10 0.00 0.00 3.69
50 51 1.435105 CATCGCGAGCTTCTCCTGA 59.565 57.895 16.66 0.00 0.00 3.86
738 1045 2.431942 CTCGACGTCCGTTTGGGG 60.432 66.667 10.58 0.00 39.75 4.96
740 1047 3.110178 GCCTCGACGTCCGTTTGG 61.110 66.667 10.58 6.31 39.75 3.28
772 1113 0.517742 GCGTAACGCGTCAATCCAAC 60.518 55.000 14.44 1.64 44.55 3.77
789 1130 1.683790 CGCGGACAAAAGTAGAGGCG 61.684 60.000 0.00 0.00 36.29 5.52
855 1196 1.382629 GGTGCCCCCTTAGAGCAAA 59.617 57.895 0.00 0.00 38.45 3.68
874 1215 4.796495 GACATGTCCCGGTGCCCC 62.796 72.222 15.31 0.00 0.00 5.80
900 1241 1.011968 CAAGATCCAACGGCGTCGAA 61.012 55.000 20.03 1.12 40.11 3.71
929 1270 0.108992 GTGTCGGCTCGTACCATCAA 60.109 55.000 0.00 0.00 0.00 2.57
963 1308 0.390472 GTTGCTTAGCTGGCTCTCGT 60.390 55.000 5.60 0.00 0.00 4.18
991 1339 1.670949 GAGGCGGACATGAGAGCTGA 61.671 60.000 0.00 0.00 0.00 4.26
1058 1420 4.753662 AGTCGGGTCTAGCCGGCA 62.754 66.667 31.54 14.00 38.44 5.69
1283 1645 2.364448 GGAGGAGGAGCGGGTCTT 60.364 66.667 7.19 0.00 0.00 3.01
1284 1646 4.824515 CGGAGGAGGAGCGGGTCT 62.825 72.222 7.19 0.00 0.00 3.85
1683 2045 1.442184 CGAGTTCCAGGACACGACG 60.442 63.158 0.00 0.00 36.00 5.12
1722 2084 3.965539 CTCTTCCCACTGCCCAGCG 62.966 68.421 0.00 0.00 0.00 5.18
1731 2093 3.316573 CTCCACCGCCTCTTCCCAC 62.317 68.421 0.00 0.00 0.00 4.61
1992 2354 1.429930 TGCTTACACTCTGTTCCCCA 58.570 50.000 0.00 0.00 0.00 4.96
2082 2444 1.792757 ATGTCACCACACCAGGGCAT 61.793 55.000 0.00 0.00 34.48 4.40
2109 2474 7.337689 TCTGACAATGCAAAACTAGCTATCATT 59.662 33.333 0.00 0.00 0.00 2.57
2184 2549 8.372459 ACAACAGTGACATAATTAGGTTCTACA 58.628 33.333 3.99 0.00 0.00 2.74
2188 2553 7.360946 GGTGACAACAGTGACATAATTAGGTTC 60.361 40.741 3.99 1.84 32.10 3.62
2190 2555 5.938125 GGTGACAACAGTGACATAATTAGGT 59.062 40.000 1.70 1.70 32.10 3.08
2286 2651 3.729762 GCAAGCGATAACCTTTAAACCCG 60.730 47.826 0.00 0.00 0.00 5.28
2304 2669 5.121454 GTCAATAAGAGAGTTCCACAGCAAG 59.879 44.000 0.00 0.00 0.00 4.01
2352 2717 1.803334 AGACATTTTGCGCTACGGAA 58.197 45.000 9.73 0.00 35.06 4.30
2355 2720 3.181826 TCAAAGACATTTTGCGCTACG 57.818 42.857 9.73 0.00 0.00 3.51
2492 2857 2.092267 ACCATGATAATGCTGTCTGGCA 60.092 45.455 0.00 0.00 46.63 4.92
2550 2915 5.992217 GTCAAAAAGCTCTTCTCCTTGAGTA 59.008 40.000 0.00 0.00 30.52 2.59
2596 2961 0.324943 TGCTCTGTCTGGGGCTTTAC 59.675 55.000 0.00 0.00 0.00 2.01
2763 3128 1.003355 TCTCCTTGCAGCCCTTTCG 60.003 57.895 0.00 0.00 0.00 3.46
2772 3137 2.015456 TCTCCAAGAGTCTCCTTGCA 57.985 50.000 0.00 0.00 41.53 4.08
2917 3282 1.597302 CGAGATCAGCCCATGCCAG 60.597 63.158 0.00 0.00 38.69 4.85
3018 3383 9.228949 CAGCTATTTATATCCTTCATTTGCTCT 57.771 33.333 0.00 0.00 0.00 4.09
3070 3435 4.576463 CCATTGCCTGGTTTACTCTATGAC 59.424 45.833 0.00 0.00 40.49 3.06
3151 3520 3.270877 GTTATCACCTCCACGCTTTCAT 58.729 45.455 0.00 0.00 0.00 2.57
3154 3523 2.851263 TGTTATCACCTCCACGCTTT 57.149 45.000 0.00 0.00 0.00 3.51
3159 3528 7.390718 AGTGTTTCTTTATGTTATCACCTCCAC 59.609 37.037 0.00 0.00 0.00 4.02
3210 3579 6.777213 TGTAGTACCTTTCTCCTGAAGATC 57.223 41.667 0.00 0.00 32.82 2.75
3217 3586 5.272405 TCCTCTTGTAGTACCTTTCTCCT 57.728 43.478 0.00 0.00 0.00 3.69
3230 3610 5.415701 GCAAACATTCAGGAATCCTCTTGTA 59.584 40.000 0.00 0.00 30.79 2.41
3231 3611 4.219288 GCAAACATTCAGGAATCCTCTTGT 59.781 41.667 0.00 0.37 30.79 3.16
3232 3612 4.461781 AGCAAACATTCAGGAATCCTCTTG 59.538 41.667 0.00 0.00 0.00 3.02
3233 3613 4.461781 CAGCAAACATTCAGGAATCCTCTT 59.538 41.667 0.00 0.00 0.00 2.85
3234 3614 4.015084 CAGCAAACATTCAGGAATCCTCT 58.985 43.478 0.00 0.00 0.00 3.69
3235 3615 4.012374 TCAGCAAACATTCAGGAATCCTC 58.988 43.478 0.00 0.00 0.00 3.71
3236 3616 4.038271 TCAGCAAACATTCAGGAATCCT 57.962 40.909 0.00 0.00 0.00 3.24
3237 3617 4.022068 TGTTCAGCAAACATTCAGGAATCC 60.022 41.667 0.00 0.00 42.95 3.01
3238 3618 5.125100 TGTTCAGCAAACATTCAGGAATC 57.875 39.130 0.95 0.00 42.95 2.52
3239 3619 5.302568 TCTTGTTCAGCAAACATTCAGGAAT 59.697 36.000 5.63 0.00 46.94 3.01
3240 3620 4.644234 TCTTGTTCAGCAAACATTCAGGAA 59.356 37.500 5.63 0.00 46.94 3.36
3245 3625 5.284079 ACATGTCTTGTTCAGCAAACATTC 58.716 37.500 5.63 1.79 46.94 2.67
3281 3661 0.392193 AGGCCAATGCAGAGAAGACG 60.392 55.000 5.01 0.00 40.13 4.18
3321 3701 1.021390 CAGGTGAGCATTGGACCGAC 61.021 60.000 0.00 0.00 34.72 4.79
3322 3702 1.191489 TCAGGTGAGCATTGGACCGA 61.191 55.000 0.00 0.00 34.72 4.69
3323 3703 0.742281 CTCAGGTGAGCATTGGACCG 60.742 60.000 0.00 0.00 35.13 4.79
3324 3704 0.326264 ACTCAGGTGAGCATTGGACC 59.674 55.000 6.91 0.00 45.79 4.46
3352 3732 3.923354 AAGCAGCACTTGTCGAGAT 57.077 47.368 0.00 0.00 37.17 2.75
3386 3766 6.514947 TGGATGCAAAATAATGAGTATTGCC 58.485 36.000 6.36 0.00 44.27 4.52
3390 3770 6.570957 CGCCATGGATGCAAAATAATGAGTAT 60.571 38.462 18.40 0.00 0.00 2.12
3391 3771 5.278414 CGCCATGGATGCAAAATAATGAGTA 60.278 40.000 18.40 0.00 0.00 2.59
3398 3778 2.373224 TGACGCCATGGATGCAAAATA 58.627 42.857 18.40 0.00 0.00 1.40
3446 3827 2.046892 GAAGCTTGGAGCAGCCGA 60.047 61.111 2.10 0.00 45.56 5.54
3447 3828 2.046507 AGAAGCTTGGAGCAGCCG 60.047 61.111 2.10 0.00 45.56 5.52
3475 3856 4.163268 ACCATCTTTAGGAAGCCTCTTCTC 59.837 45.833 6.54 0.00 34.61 2.87
3527 3911 6.649141 TGAAATCACAACACTATGACCTACAC 59.351 38.462 0.00 0.00 0.00 2.90
3551 3935 4.217118 AGCAGGCTTGACAAGAATTTAGTG 59.783 41.667 19.51 5.63 0.00 2.74
3552 3936 4.217118 CAGCAGGCTTGACAAGAATTTAGT 59.783 41.667 19.51 0.00 0.00 2.24
3565 3949 1.904865 TTCCCTTGCAGCAGGCTTG 60.905 57.895 0.00 0.00 45.15 4.01
3566 3950 1.905354 GTTCCCTTGCAGCAGGCTT 60.905 57.895 0.00 0.00 45.15 4.35
3567 3951 2.282745 GTTCCCTTGCAGCAGGCT 60.283 61.111 0.00 0.00 45.15 4.58
3568 3952 2.282745 AGTTCCCTTGCAGCAGGC 60.283 61.111 0.00 0.00 45.13 4.85
3569 3953 0.615331 TAGAGTTCCCTTGCAGCAGG 59.385 55.000 0.00 0.00 0.00 4.85
3584 3968 6.517605 GTCTTCCCCAATTACTAGCTTAGAG 58.482 44.000 0.00 0.00 0.00 2.43
3586 3970 5.163437 ACGTCTTCCCCAATTACTAGCTTAG 60.163 44.000 0.00 0.00 0.00 2.18
3658 4042 1.608801 CCTTTGGGCCAGCAAATGTTC 60.609 52.381 6.23 0.00 0.00 3.18
3715 4100 3.272334 CGCTGCTAATGTCGCCCC 61.272 66.667 0.00 0.00 0.00 5.80
3730 4115 2.785477 GCATGTCATACAATCTTTGCGC 59.215 45.455 0.00 0.00 0.00 6.09
3731 4116 4.282950 AGCATGTCATACAATCTTTGCG 57.717 40.909 0.00 0.00 0.00 4.85
3732 4117 5.039333 GGAAGCATGTCATACAATCTTTGC 58.961 41.667 0.00 0.00 0.00 3.68
3733 4118 6.446781 AGGAAGCATGTCATACAATCTTTG 57.553 37.500 0.00 0.00 0.00 2.77
3734 4119 6.096001 GGAAGGAAGCATGTCATACAATCTTT 59.904 38.462 0.00 0.00 0.00 2.52
3735 4120 5.591877 GGAAGGAAGCATGTCATACAATCTT 59.408 40.000 0.00 0.00 0.00 2.40
3736 4121 5.128919 GGAAGGAAGCATGTCATACAATCT 58.871 41.667 0.00 0.00 0.00 2.40
3737 4122 4.276926 GGGAAGGAAGCATGTCATACAATC 59.723 45.833 0.00 0.00 0.00 2.67
3738 4123 4.079558 AGGGAAGGAAGCATGTCATACAAT 60.080 41.667 0.00 0.00 0.00 2.71
3739 4124 3.266772 AGGGAAGGAAGCATGTCATACAA 59.733 43.478 0.00 0.00 0.00 2.41
3740 4125 2.846206 AGGGAAGGAAGCATGTCATACA 59.154 45.455 0.00 0.00 0.00 2.29
3741 4126 3.209410 CAGGGAAGGAAGCATGTCATAC 58.791 50.000 0.00 0.00 0.00 2.39
3742 4127 2.846206 ACAGGGAAGGAAGCATGTCATA 59.154 45.455 0.00 0.00 0.00 2.15
3743 4128 1.637553 ACAGGGAAGGAAGCATGTCAT 59.362 47.619 0.00 0.00 0.00 3.06
3744 4129 1.067295 ACAGGGAAGGAAGCATGTCA 58.933 50.000 0.00 0.00 0.00 3.58
3745 4130 1.271597 ACACAGGGAAGGAAGCATGTC 60.272 52.381 0.00 0.00 0.00 3.06
3746 4131 0.773644 ACACAGGGAAGGAAGCATGT 59.226 50.000 0.00 0.00 0.00 3.21
3747 4132 2.787473 TACACAGGGAAGGAAGCATG 57.213 50.000 0.00 0.00 0.00 4.06
3748 4133 2.173569 GGATACACAGGGAAGGAAGCAT 59.826 50.000 0.00 0.00 0.00 3.79
3749 4134 1.559682 GGATACACAGGGAAGGAAGCA 59.440 52.381 0.00 0.00 0.00 3.91
3750 4135 1.473434 CGGATACACAGGGAAGGAAGC 60.473 57.143 0.00 0.00 0.00 3.86
3751 4136 2.108168 TCGGATACACAGGGAAGGAAG 58.892 52.381 0.00 0.00 0.00 3.46
3752 4137 1.829222 GTCGGATACACAGGGAAGGAA 59.171 52.381 0.00 0.00 0.00 3.36
3753 4138 1.481871 GTCGGATACACAGGGAAGGA 58.518 55.000 0.00 0.00 0.00 3.36
3754 4139 0.102481 CGTCGGATACACAGGGAAGG 59.898 60.000 0.00 0.00 0.00 3.46
3755 4140 0.527817 GCGTCGGATACACAGGGAAG 60.528 60.000 0.00 0.00 0.00 3.46
3756 4141 1.252215 TGCGTCGGATACACAGGGAA 61.252 55.000 0.00 0.00 0.00 3.97
3757 4142 1.040893 ATGCGTCGGATACACAGGGA 61.041 55.000 0.00 0.00 0.00 4.20
3758 4143 0.671796 TATGCGTCGGATACACAGGG 59.328 55.000 1.90 0.00 0.00 4.45
3759 4144 2.034179 TCTTATGCGTCGGATACACAGG 59.966 50.000 5.89 0.00 0.00 4.00
3760 4145 3.349488 TCTTATGCGTCGGATACACAG 57.651 47.619 5.89 2.07 0.00 3.66
3761 4146 3.786516 TTCTTATGCGTCGGATACACA 57.213 42.857 5.89 0.00 0.00 3.72
3762 4147 5.459110 TTTTTCTTATGCGTCGGATACAC 57.541 39.130 5.89 0.00 0.00 2.90
3763 4148 6.046593 AGATTTTTCTTATGCGTCGGATACA 58.953 36.000 5.89 0.00 0.00 2.29
3764 4149 6.526566 AGATTTTTCTTATGCGTCGGATAC 57.473 37.500 5.89 0.00 0.00 2.24
3765 4150 6.202188 GGAAGATTTTTCTTATGCGTCGGATA 59.798 38.462 1.90 1.90 0.00 2.59
3766 4151 5.007724 GGAAGATTTTTCTTATGCGTCGGAT 59.992 40.000 4.20 4.20 0.00 4.18
3767 4152 4.331717 GGAAGATTTTTCTTATGCGTCGGA 59.668 41.667 0.00 0.00 0.00 4.55
3768 4153 4.094294 TGGAAGATTTTTCTTATGCGTCGG 59.906 41.667 0.00 0.00 0.00 4.79
3769 4154 5.022021 GTGGAAGATTTTTCTTATGCGTCG 58.978 41.667 0.00 0.00 0.00 5.12
3770 4155 5.795441 GTGTGGAAGATTTTTCTTATGCGTC 59.205 40.000 0.00 0.00 0.00 5.19
3771 4156 5.473504 AGTGTGGAAGATTTTTCTTATGCGT 59.526 36.000 0.00 0.00 0.00 5.24
3772 4157 5.942872 AGTGTGGAAGATTTTTCTTATGCG 58.057 37.500 0.00 0.00 0.00 4.73
3773 4158 6.913170 TGAGTGTGGAAGATTTTTCTTATGC 58.087 36.000 0.00 0.00 0.00 3.14
3774 4159 9.748708 TTTTGAGTGTGGAAGATTTTTCTTATG 57.251 29.630 0.00 0.00 0.00 1.90
3787 4172 9.238368 CCCTATAGTTTATTTTTGAGTGTGGAA 57.762 33.333 0.00 0.00 0.00 3.53
3788 4173 8.387813 ACCCTATAGTTTATTTTTGAGTGTGGA 58.612 33.333 0.00 0.00 0.00 4.02
3789 4174 8.575649 ACCCTATAGTTTATTTTTGAGTGTGG 57.424 34.615 0.00 0.00 0.00 4.17
3791 4176 9.901172 CCTACCCTATAGTTTATTTTTGAGTGT 57.099 33.333 0.00 0.00 0.00 3.55
3792 4177 9.338622 CCCTACCCTATAGTTTATTTTTGAGTG 57.661 37.037 0.00 0.00 0.00 3.51
3793 4178 8.500238 CCCCTACCCTATAGTTTATTTTTGAGT 58.500 37.037 0.00 0.00 0.00 3.41
3794 4179 8.720537 TCCCCTACCCTATAGTTTATTTTTGAG 58.279 37.037 0.00 0.00 0.00 3.02
3795 4180 8.641498 TCCCCTACCCTATAGTTTATTTTTGA 57.359 34.615 0.00 0.00 0.00 2.69
3796 4181 9.350951 CTTCCCCTACCCTATAGTTTATTTTTG 57.649 37.037 0.00 0.00 0.00 2.44
3797 4182 9.300187 TCTTCCCCTACCCTATAGTTTATTTTT 57.700 33.333 0.00 0.00 0.00 1.94
3798 4183 8.881109 TCTTCCCCTACCCTATAGTTTATTTT 57.119 34.615 0.00 0.00 0.00 1.82
3799 4184 8.881109 TTCTTCCCCTACCCTATAGTTTATTT 57.119 34.615 0.00 0.00 0.00 1.40
3800 4185 8.881109 TTTCTTCCCCTACCCTATAGTTTATT 57.119 34.615 0.00 0.00 0.00 1.40
3801 4186 8.881109 TTTTCTTCCCCTACCCTATAGTTTAT 57.119 34.615 0.00 0.00 0.00 1.40
3802 4187 8.881109 ATTTTCTTCCCCTACCCTATAGTTTA 57.119 34.615 0.00 0.00 0.00 2.01
3803 4188 7.632164 AGATTTTCTTCCCCTACCCTATAGTTT 59.368 37.037 0.00 0.00 0.00 2.66
3804 4189 7.147195 AGATTTTCTTCCCCTACCCTATAGTT 58.853 38.462 0.00 0.00 0.00 2.24
3805 4190 6.704792 AGATTTTCTTCCCCTACCCTATAGT 58.295 40.000 0.00 0.00 0.00 2.12
3806 4191 7.634526 AAGATTTTCTTCCCCTACCCTATAG 57.365 40.000 0.00 0.00 28.99 1.31
3808 4193 9.113797 GTATAAGATTTTCTTCCCCTACCCTAT 57.886 37.037 0.00 0.00 37.89 2.57
3809 4194 7.234166 CGTATAAGATTTTCTTCCCCTACCCTA 59.766 40.741 0.00 0.00 37.89 3.53
3810 4195 6.042897 CGTATAAGATTTTCTTCCCCTACCCT 59.957 42.308 0.00 0.00 37.89 4.34
3811 4196 6.042437 TCGTATAAGATTTTCTTCCCCTACCC 59.958 42.308 0.00 0.00 37.89 3.69
3812 4197 6.927936 GTCGTATAAGATTTTCTTCCCCTACC 59.072 42.308 0.00 0.00 37.89 3.18
3813 4198 6.927936 GGTCGTATAAGATTTTCTTCCCCTAC 59.072 42.308 0.00 0.00 37.89 3.18
3814 4199 6.612456 TGGTCGTATAAGATTTTCTTCCCCTA 59.388 38.462 0.00 0.00 37.89 3.53
3815 4200 5.427481 TGGTCGTATAAGATTTTCTTCCCCT 59.573 40.000 0.00 0.00 37.89 4.79
3816 4201 5.677567 TGGTCGTATAAGATTTTCTTCCCC 58.322 41.667 0.00 0.00 37.89 4.81
3817 4202 5.758784 CCTGGTCGTATAAGATTTTCTTCCC 59.241 44.000 0.00 0.00 37.89 3.97
3818 4203 6.346896 ACCTGGTCGTATAAGATTTTCTTCC 58.653 40.000 0.00 0.00 37.89 3.46
3819 4204 7.466193 GACCTGGTCGTATAAGATTTTCTTC 57.534 40.000 11.71 0.00 37.89 2.87
3835 4220 1.012486 CGGCTTTGTACGACCTGGTC 61.012 60.000 16.99 16.99 0.00 4.02
3836 4221 1.005394 CGGCTTTGTACGACCTGGT 60.005 57.895 0.00 0.00 0.00 4.00
3837 4222 0.108329 ATCGGCTTTGTACGACCTGG 60.108 55.000 0.00 0.00 42.39 4.45
3838 4223 1.393539 CAATCGGCTTTGTACGACCTG 59.606 52.381 0.00 0.00 42.39 4.00
3839 4224 1.001633 ACAATCGGCTTTGTACGACCT 59.998 47.619 0.00 0.00 42.39 3.85
3840 4225 1.127951 CACAATCGGCTTTGTACGACC 59.872 52.381 0.00 0.00 42.39 4.79
3841 4226 2.063266 TCACAATCGGCTTTGTACGAC 58.937 47.619 0.00 0.00 42.39 4.34
3842 4227 2.029739 TCTCACAATCGGCTTTGTACGA 60.030 45.455 0.00 0.00 43.85 3.43
3843 4228 2.092211 GTCTCACAATCGGCTTTGTACG 59.908 50.000 2.88 0.00 37.73 3.67
3844 4229 2.415512 GGTCTCACAATCGGCTTTGTAC 59.584 50.000 2.88 0.00 37.73 2.90
3845 4230 2.614481 GGGTCTCACAATCGGCTTTGTA 60.614 50.000 2.88 0.00 37.73 2.41
3846 4231 1.523758 GGTCTCACAATCGGCTTTGT 58.476 50.000 0.00 0.00 40.39 2.83
3847 4232 0.804989 GGGTCTCACAATCGGCTTTG 59.195 55.000 0.00 0.00 0.00 2.77
3848 4233 0.693049 AGGGTCTCACAATCGGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
3849 4234 0.250513 GAGGGTCTCACAATCGGCTT 59.749 55.000 0.00 0.00 0.00 4.35
3850 4235 0.616111 AGAGGGTCTCACAATCGGCT 60.616 55.000 0.00 0.00 32.06 5.52
3851 4236 0.250513 AAGAGGGTCTCACAATCGGC 59.749 55.000 0.00 0.00 32.06 5.54
3852 4237 1.827969 AGAAGAGGGTCTCACAATCGG 59.172 52.381 0.00 0.00 32.06 4.18
3853 4238 2.417924 CCAGAAGAGGGTCTCACAATCG 60.418 54.545 0.00 0.00 32.06 3.34
3854 4239 2.834549 TCCAGAAGAGGGTCTCACAATC 59.165 50.000 0.00 0.00 32.06 2.67
3855 4240 2.907892 TCCAGAAGAGGGTCTCACAAT 58.092 47.619 0.00 0.00 32.06 2.71
3856 4241 2.398754 TCCAGAAGAGGGTCTCACAA 57.601 50.000 0.00 0.00 32.06 3.33
3857 4242 2.182827 CATCCAGAAGAGGGTCTCACA 58.817 52.381 0.00 0.00 32.06 3.58
3858 4243 2.093764 CACATCCAGAAGAGGGTCTCAC 60.094 54.545 0.00 0.00 32.06 3.51
3859 4244 2.182827 CACATCCAGAAGAGGGTCTCA 58.817 52.381 0.00 0.00 32.06 3.27
3860 4245 2.167487 GTCACATCCAGAAGAGGGTCTC 59.833 54.545 0.00 0.00 0.00 3.36
3861 4246 2.183679 GTCACATCCAGAAGAGGGTCT 58.816 52.381 0.00 0.00 0.00 3.85
3862 4247 1.902508 TGTCACATCCAGAAGAGGGTC 59.097 52.381 0.00 0.00 0.00 4.46
3863 4248 1.625818 GTGTCACATCCAGAAGAGGGT 59.374 52.381 0.00 0.00 0.00 4.34
3864 4249 1.065854 GGTGTCACATCCAGAAGAGGG 60.066 57.143 5.12 0.00 0.00 4.30
3865 4250 1.905215 AGGTGTCACATCCAGAAGAGG 59.095 52.381 5.12 0.00 0.00 3.69
3866 4251 2.354503 CCAGGTGTCACATCCAGAAGAG 60.355 54.545 5.12 0.00 0.00 2.85
3867 4252 1.625315 CCAGGTGTCACATCCAGAAGA 59.375 52.381 5.12 0.00 0.00 2.87
3868 4253 1.947678 GCCAGGTGTCACATCCAGAAG 60.948 57.143 5.12 0.00 0.00 2.85
3869 4254 0.036732 GCCAGGTGTCACATCCAGAA 59.963 55.000 5.12 0.00 0.00 3.02
3870 4255 1.679311 GCCAGGTGTCACATCCAGA 59.321 57.895 5.12 0.00 0.00 3.86
3871 4256 1.742880 CGCCAGGTGTCACATCCAG 60.743 63.158 5.12 0.00 0.00 3.86
3872 4257 1.552799 ATCGCCAGGTGTCACATCCA 61.553 55.000 5.12 0.00 0.00 3.41
3873 4258 0.464036 TATCGCCAGGTGTCACATCC 59.536 55.000 5.12 0.00 0.00 3.51
3874 4259 1.571919 GTATCGCCAGGTGTCACATC 58.428 55.000 5.12 0.00 0.00 3.06
3875 4260 0.179111 CGTATCGCCAGGTGTCACAT 60.179 55.000 5.12 0.00 0.00 3.21
3876 4261 1.214325 CGTATCGCCAGGTGTCACA 59.786 57.895 5.12 0.00 0.00 3.58
3877 4262 0.108992 TTCGTATCGCCAGGTGTCAC 60.109 55.000 0.00 0.00 0.00 3.67
3878 4263 0.821517 ATTCGTATCGCCAGGTGTCA 59.178 50.000 0.00 0.00 0.00 3.58
3879 4264 1.488527 GATTCGTATCGCCAGGTGTC 58.511 55.000 0.00 0.00 0.00 3.67
3880 4265 0.104304 GGATTCGTATCGCCAGGTGT 59.896 55.000 0.00 0.00 0.00 4.16
3881 4266 0.389391 AGGATTCGTATCGCCAGGTG 59.611 55.000 0.00 0.00 0.00 4.00
3882 4267 1.991121 TAGGATTCGTATCGCCAGGT 58.009 50.000 0.00 0.00 0.00 4.00
3883 4268 3.318017 CTTTAGGATTCGTATCGCCAGG 58.682 50.000 0.00 0.00 0.00 4.45
3884 4269 2.731976 GCTTTAGGATTCGTATCGCCAG 59.268 50.000 0.00 0.00 0.00 4.85
3885 4270 2.101750 TGCTTTAGGATTCGTATCGCCA 59.898 45.455 0.00 0.00 0.00 5.69
3886 4271 2.731976 CTGCTTTAGGATTCGTATCGCC 59.268 50.000 0.00 0.00 0.00 5.54
3887 4272 2.155924 GCTGCTTTAGGATTCGTATCGC 59.844 50.000 0.00 0.00 0.00 4.58
3888 4273 3.381045 TGCTGCTTTAGGATTCGTATCG 58.619 45.455 0.00 0.00 0.00 2.92
3889 4274 3.185391 GCTGCTGCTTTAGGATTCGTATC 59.815 47.826 8.53 0.00 36.03 2.24
3890 4275 3.134458 GCTGCTGCTTTAGGATTCGTAT 58.866 45.455 8.53 0.00 36.03 3.06
3891 4276 2.550978 GCTGCTGCTTTAGGATTCGTA 58.449 47.619 8.53 0.00 36.03 3.43
3892 4277 1.373570 GCTGCTGCTTTAGGATTCGT 58.626 50.000 8.53 0.00 36.03 3.85
3893 4278 0.659957 GGCTGCTGCTTTAGGATTCG 59.340 55.000 15.64 0.00 39.59 3.34
3894 4279 1.028130 GGGCTGCTGCTTTAGGATTC 58.972 55.000 15.64 0.00 39.59 2.52
3895 4280 0.749454 CGGGCTGCTGCTTTAGGATT 60.749 55.000 15.64 0.00 39.59 3.01
3896 4281 1.153086 CGGGCTGCTGCTTTAGGAT 60.153 57.895 15.64 0.00 39.59 3.24
3897 4282 2.268920 CGGGCTGCTGCTTTAGGA 59.731 61.111 15.64 0.00 39.59 2.94
3898 4283 2.045926 ACGGGCTGCTGCTTTAGG 60.046 61.111 15.64 3.41 39.59 2.69
3899 4284 2.109126 GGACGGGCTGCTGCTTTAG 61.109 63.158 15.64 7.00 39.59 1.85
3900 4285 2.046314 GGACGGGCTGCTGCTTTA 60.046 61.111 15.64 0.00 39.59 1.85
3905 4290 2.825836 GAATGGGACGGGCTGCTG 60.826 66.667 0.00 0.00 0.00 4.41
3906 4291 4.115199 GGAATGGGACGGGCTGCT 62.115 66.667 0.00 0.00 0.00 4.24
3908 4293 4.506255 GGGGAATGGGACGGGCTG 62.506 72.222 0.00 0.00 0.00 4.85
3913 4298 4.547367 GAGGCGGGGAATGGGACG 62.547 72.222 0.00 0.00 0.00 4.79
3914 4299 3.090532 AGAGGCGGGGAATGGGAC 61.091 66.667 0.00 0.00 0.00 4.46
3915 4300 2.768344 GAGAGGCGGGGAATGGGA 60.768 66.667 0.00 0.00 0.00 4.37
3916 4301 3.878667 GGAGAGGCGGGGAATGGG 61.879 72.222 0.00 0.00 0.00 4.00
3917 4302 4.241555 CGGAGAGGCGGGGAATGG 62.242 72.222 0.00 0.00 0.00 3.16
3918 4303 2.925162 GAACGGAGAGGCGGGGAATG 62.925 65.000 0.00 0.00 0.00 2.67
3919 4304 2.687566 AACGGAGAGGCGGGGAAT 60.688 61.111 0.00 0.00 0.00 3.01
3920 4305 3.387947 GAACGGAGAGGCGGGGAA 61.388 66.667 0.00 0.00 0.00 3.97
3924 4309 2.536997 ATTTGGGAACGGAGAGGCGG 62.537 60.000 0.00 0.00 0.00 6.13
3925 4310 1.078426 ATTTGGGAACGGAGAGGCG 60.078 57.895 0.00 0.00 0.00 5.52
3926 4311 0.748367 GGATTTGGGAACGGAGAGGC 60.748 60.000 0.00 0.00 0.00 4.70
3927 4312 0.462047 CGGATTTGGGAACGGAGAGG 60.462 60.000 0.00 0.00 0.00 3.69
3928 4313 3.065575 CGGATTTGGGAACGGAGAG 57.934 57.895 0.00 0.00 0.00 3.20
3933 4318 1.404035 GGAAATCCGGATTTGGGAACG 59.596 52.381 39.98 0.00 40.77 3.95
3934 4319 2.735151 AGGAAATCCGGATTTGGGAAC 58.265 47.619 39.98 26.40 40.77 3.62
3935 4320 3.372241 GGTAGGAAATCCGGATTTGGGAA 60.372 47.826 39.98 22.24 40.77 3.97
3936 4321 2.173996 GGTAGGAAATCCGGATTTGGGA 59.826 50.000 39.98 23.73 40.77 4.37
3937 4322 2.092103 TGGTAGGAAATCCGGATTTGGG 60.092 50.000 39.98 0.00 40.77 4.12
3938 4323 3.290948 TGGTAGGAAATCCGGATTTGG 57.709 47.619 39.98 0.00 40.77 3.28
3939 4324 4.270008 ACTTGGTAGGAAATCCGGATTTG 58.730 43.478 39.98 26.29 40.77 2.32
3940 4325 4.586306 ACTTGGTAGGAAATCCGGATTT 57.414 40.909 36.60 36.60 43.14 2.17
3941 4326 4.018779 TGAACTTGGTAGGAAATCCGGATT 60.019 41.667 24.27 24.27 42.08 3.01
3942 4327 3.521937 TGAACTTGGTAGGAAATCCGGAT 59.478 43.478 12.38 12.38 42.08 4.18
3943 4328 2.907696 TGAACTTGGTAGGAAATCCGGA 59.092 45.455 6.61 6.61 42.08 5.14
3944 4329 3.343941 TGAACTTGGTAGGAAATCCGG 57.656 47.619 0.00 0.00 42.08 5.14
3945 4330 5.186198 AGATTGAACTTGGTAGGAAATCCG 58.814 41.667 0.00 0.00 42.08 4.18
3946 4331 6.418946 AGAGATTGAACTTGGTAGGAAATCC 58.581 40.000 0.00 0.00 0.00 3.01
3947 4332 6.540551 GGAGAGATTGAACTTGGTAGGAAATC 59.459 42.308 0.00 0.00 0.00 2.17
3948 4333 6.012508 TGGAGAGATTGAACTTGGTAGGAAAT 60.013 38.462 0.00 0.00 0.00 2.17
3949 4334 5.309543 TGGAGAGATTGAACTTGGTAGGAAA 59.690 40.000 0.00 0.00 0.00 3.13
3950 4335 4.844085 TGGAGAGATTGAACTTGGTAGGAA 59.156 41.667 0.00 0.00 0.00 3.36
3951 4336 4.223032 GTGGAGAGATTGAACTTGGTAGGA 59.777 45.833 0.00 0.00 0.00 2.94
3952 4337 4.223923 AGTGGAGAGATTGAACTTGGTAGG 59.776 45.833 0.00 0.00 0.00 3.18
3953 4338 5.413309 AGTGGAGAGATTGAACTTGGTAG 57.587 43.478 0.00 0.00 0.00 3.18
3954 4339 5.566826 CGAAGTGGAGAGATTGAACTTGGTA 60.567 44.000 0.00 0.00 31.45 3.25
3955 4340 4.646572 GAAGTGGAGAGATTGAACTTGGT 58.353 43.478 0.00 0.00 31.45 3.67
3956 4341 3.681897 CGAAGTGGAGAGATTGAACTTGG 59.318 47.826 0.00 0.00 31.45 3.61
3957 4342 3.124297 GCGAAGTGGAGAGATTGAACTTG 59.876 47.826 0.00 0.00 31.45 3.16
3958 4343 3.330267 GCGAAGTGGAGAGATTGAACTT 58.670 45.455 0.00 0.00 33.91 2.66
3959 4344 2.354203 GGCGAAGTGGAGAGATTGAACT 60.354 50.000 0.00 0.00 0.00 3.01
3960 4345 2.003301 GGCGAAGTGGAGAGATTGAAC 58.997 52.381 0.00 0.00 0.00 3.18
3961 4346 1.404181 CGGCGAAGTGGAGAGATTGAA 60.404 52.381 0.00 0.00 0.00 2.69
3962 4347 0.173481 CGGCGAAGTGGAGAGATTGA 59.827 55.000 0.00 0.00 0.00 2.57
3963 4348 1.424493 GCGGCGAAGTGGAGAGATTG 61.424 60.000 12.98 0.00 0.00 2.67
3964 4349 1.153549 GCGGCGAAGTGGAGAGATT 60.154 57.895 12.98 0.00 0.00 2.40
3965 4350 2.496817 GCGGCGAAGTGGAGAGAT 59.503 61.111 12.98 0.00 0.00 2.75
3966 4351 3.760035 GGCGGCGAAGTGGAGAGA 61.760 66.667 12.98 0.00 0.00 3.10
4012 4397 3.451556 ATCCAGGAGCATCGCCGTG 62.452 63.158 0.00 0.00 34.37 4.94
4013 4398 3.157252 ATCCAGGAGCATCGCCGT 61.157 61.111 0.00 0.00 34.37 5.68
4014 4399 2.664185 CATCCAGGAGCATCGCCG 60.664 66.667 0.00 0.00 34.37 6.46
4015 4400 2.976903 GCATCCAGGAGCATCGCC 60.977 66.667 0.00 0.00 34.37 5.54
4016 4401 2.976903 GGCATCCAGGAGCATCGC 60.977 66.667 11.62 2.17 34.37 4.58
4017 4402 1.301558 GAGGCATCCAGGAGCATCG 60.302 63.158 11.62 0.00 34.37 3.84
4018 4403 1.001860 GTAGAGGCATCCAGGAGCATC 59.998 57.143 14.28 14.28 41.46 3.91
4019 4404 1.055040 GTAGAGGCATCCAGGAGCAT 58.945 55.000 11.62 5.68 0.00 3.79
4020 4405 0.031716 AGTAGAGGCATCCAGGAGCA 60.032 55.000 11.62 0.00 0.00 4.26
4021 4406 1.127343 AAGTAGAGGCATCCAGGAGC 58.873 55.000 0.00 0.00 0.00 4.70
4022 4407 1.202627 GCAAGTAGAGGCATCCAGGAG 60.203 57.143 0.00 0.00 0.00 3.69
4023 4408 0.833287 GCAAGTAGAGGCATCCAGGA 59.167 55.000 0.00 0.00 0.00 3.86
4024 4409 0.531532 CGCAAGTAGAGGCATCCAGG 60.532 60.000 0.00 0.00 0.00 4.45
4025 4410 0.531532 CCGCAAGTAGAGGCATCCAG 60.532 60.000 0.00 0.00 0.00 3.86
4026 4411 1.522092 CCGCAAGTAGAGGCATCCA 59.478 57.895 0.00 0.00 0.00 3.41
4027 4412 4.445699 CCGCAAGTAGAGGCATCC 57.554 61.111 0.00 0.00 0.00 3.51
4032 4417 2.509336 CGGTGCCGCAAGTAGAGG 60.509 66.667 0.00 0.00 40.66 3.69
4054 4439 3.195002 CGGTGTGGGCATAGTGCG 61.195 66.667 0.00 0.00 46.21 5.34
4055 4440 3.508840 GCGGTGTGGGCATAGTGC 61.509 66.667 0.00 0.00 44.08 4.40
4056 4441 2.046411 TGCGGTGTGGGCATAGTG 60.046 61.111 0.00 0.00 35.04 2.74
4062 4447 2.624674 ATAAGGGATGCGGTGTGGGC 62.625 60.000 0.00 0.00 0.00 5.36
4063 4448 1.531748 ATAAGGGATGCGGTGTGGG 59.468 57.895 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.