Multiple sequence alignment - TraesCS7B01G368500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G368500 chr7B 100.000 4085 0 0 1 4085 632796681 632792597 0.000000e+00 7544.0
1 TraesCS7B01G368500 chr7B 91.287 3604 215 45 159 3706 633004969 633008529 0.000000e+00 4824.0
2 TraesCS7B01G368500 chr7B 86.803 879 100 13 1 864 668451168 668450291 0.000000e+00 966.0
3 TraesCS7B01G368500 chr7B 86.490 866 106 8 5 864 36852316 36851456 0.000000e+00 941.0
4 TraesCS7B01G368500 chr7B 93.043 230 15 1 2184 2413 632710032 632709804 6.540000e-88 335.0
5 TraesCS7B01G368500 chr7B 91.429 210 17 1 2184 2393 632942321 632942529 1.860000e-73 287.0
6 TraesCS7B01G368500 chr7D 94.728 2997 118 12 887 3863 574271440 574274416 0.000000e+00 4623.0
7 TraesCS7B01G368500 chr7D 89.286 280 22 6 2184 2457 573912463 573912186 1.090000e-90 344.0
8 TraesCS7B01G368500 chr7D 86.250 160 19 1 3874 4033 519108182 519108338 1.950000e-38 171.0
9 TraesCS7B01G368500 chr7D 86.538 156 18 1 3876 4031 84339811 84339659 7.020000e-38 169.0
10 TraesCS7B01G368500 chr7D 79.821 223 45 0 642 864 384975662 384975884 3.270000e-36 163.0
11 TraesCS7B01G368500 chr7D 98.148 54 1 0 4032 4085 574274439 574274492 1.210000e-15 95.3
12 TraesCS7B01G368500 chr7D 87.037 54 7 0 2459 2512 573912153 573912100 1.230000e-05 62.1
13 TraesCS7B01G368500 chr7A 92.232 3051 140 29 881 3863 663575709 663578730 0.000000e+00 4231.0
14 TraesCS7B01G368500 chr7A 85.897 156 19 1 3879 4034 732938612 732938460 3.270000e-36 163.0
15 TraesCS7B01G368500 chr7A 96.296 54 2 0 4032 4085 663578753 663578806 5.620000e-14 89.8
16 TraesCS7B01G368500 chr2D 88.571 875 90 8 1 867 641575582 641574710 0.000000e+00 1053.0
17 TraesCS7B01G368500 chr2D 83.871 155 22 1 3878 4032 558799551 558799702 1.180000e-30 145.0
18 TraesCS7B01G368500 chr4B 88.229 875 92 8 1 867 645294139 645293268 0.000000e+00 1035.0
19 TraesCS7B01G368500 chr2B 87.514 873 108 1 1 872 610696717 610695845 0.000000e+00 1007.0
20 TraesCS7B01G368500 chr2B 84.615 143 19 1 3889 4031 386595240 386595101 5.510000e-29 139.0
21 TraesCS7B01G368500 chr2B 72.157 255 58 12 630 877 620851110 620850862 9.480000e-07 65.8
22 TraesCS7B01G368500 chr3B 86.606 881 102 5 1 866 564316120 564316999 0.000000e+00 959.0
23 TraesCS7B01G368500 chr3B 85.698 881 108 5 1 864 728998543 728997664 0.000000e+00 913.0
24 TraesCS7B01G368500 chr5B 86.364 880 104 5 1 866 645045637 645046514 0.000000e+00 946.0
25 TraesCS7B01G368500 chr5B 83.974 156 22 1 3878 4033 516949279 516949127 3.290000e-31 147.0
26 TraesCS7B01G368500 chr1B 90.490 694 65 1 1 693 570701759 570701066 0.000000e+00 915.0
27 TraesCS7B01G368500 chrUn 100.000 175 0 0 938 1112 315368522 315368696 1.420000e-84 324.0
28 TraesCS7B01G368500 chrUn 100.000 175 0 0 938 1112 357400960 357400786 1.420000e-84 324.0
29 TraesCS7B01G368500 chrUn 100.000 60 0 0 887 946 315368327 315368386 1.200000e-20 111.0
30 TraesCS7B01G368500 chrUn 100.000 60 0 0 887 946 357401155 357401096 1.200000e-20 111.0
31 TraesCS7B01G368500 chr6B 88.312 154 15 1 3879 4032 178217793 178217943 9.020000e-42 182.0
32 TraesCS7B01G368500 chr1D 83.974 156 22 1 3878 4033 143175874 143175722 3.290000e-31 147.0
33 TraesCS7B01G368500 chr5D 90.000 110 10 1 3923 4031 59797751 59797860 1.530000e-29 141.0
34 TraesCS7B01G368500 chr5D 74.627 201 51 0 642 842 192264432 192264632 5.620000e-14 89.8
35 TraesCS7B01G368500 chr4D 82.979 141 22 2 731 870 307266213 307266074 4.290000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G368500 chr7B 632792597 632796681 4084 True 7544.00 7544 100.000 1 4085 1 chr7B.!!$R3 4084
1 TraesCS7B01G368500 chr7B 633004969 633008529 3560 False 4824.00 4824 91.287 159 3706 1 chr7B.!!$F2 3547
2 TraesCS7B01G368500 chr7B 668450291 668451168 877 True 966.00 966 86.803 1 864 1 chr7B.!!$R4 863
3 TraesCS7B01G368500 chr7B 36851456 36852316 860 True 941.00 941 86.490 5 864 1 chr7B.!!$R1 859
4 TraesCS7B01G368500 chr7D 574271440 574274492 3052 False 2359.15 4623 96.438 887 4085 2 chr7D.!!$F3 3198
5 TraesCS7B01G368500 chr7A 663575709 663578806 3097 False 2160.40 4231 94.264 881 4085 2 chr7A.!!$F1 3204
6 TraesCS7B01G368500 chr2D 641574710 641575582 872 True 1053.00 1053 88.571 1 867 1 chr2D.!!$R1 866
7 TraesCS7B01G368500 chr4B 645293268 645294139 871 True 1035.00 1035 88.229 1 867 1 chr4B.!!$R1 866
8 TraesCS7B01G368500 chr2B 610695845 610696717 872 True 1007.00 1007 87.514 1 872 1 chr2B.!!$R2 871
9 TraesCS7B01G368500 chr3B 564316120 564316999 879 False 959.00 959 86.606 1 866 1 chr3B.!!$F1 865
10 TraesCS7B01G368500 chr3B 728997664 728998543 879 True 913.00 913 85.698 1 864 1 chr3B.!!$R1 863
11 TraesCS7B01G368500 chr5B 645045637 645046514 877 False 946.00 946 86.364 1 866 1 chr5B.!!$F1 865
12 TraesCS7B01G368500 chr1B 570701066 570701759 693 True 915.00 915 90.490 1 693 1 chr1B.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 832 0.800012 GTTTGAATGGGCGCGTTAGA 59.200 50.0 8.43 0.0 0.00 2.10 F
1104 1155 0.252467 ACTCCCTCACCTCCCTTCTG 60.252 60.0 0.00 0.0 0.00 3.02 F
2783 2846 0.827507 GGTGAAAGGGCAGCAAGGAA 60.828 55.0 0.00 0.0 36.35 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 2662 0.615331 TGCTCTGTCTGGGGCTTTAG 59.385 55.0 0.00 0.0 0.0 1.85 R
2877 2940 0.459489 AGTCTCGCATCAGCTTCCTC 59.541 55.0 0.00 0.0 39.1 3.71 R
3878 4017 0.109179 TCGTACGTGACCCATTTCCG 60.109 55.0 16.05 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.003173 CCGCCTGGTCTTCCTCCA 61.003 66.667 0.00 0.00 34.23 3.86
33 34 2.428890 GTCTTCCTCCATGACGATGAGT 59.571 50.000 0.00 0.00 0.00 3.41
34 35 3.099905 TCTTCCTCCATGACGATGAGTT 58.900 45.455 0.00 0.00 0.00 3.01
99 100 2.496817 GCCTCCTCGTGCTCGAAT 59.503 61.111 12.41 0.00 45.61 3.34
353 355 3.241530 TTCACCCGCTGCCTCTGT 61.242 61.111 0.00 0.00 0.00 3.41
395 397 3.467226 GGGATGAACTCCGCGGGA 61.467 66.667 27.83 11.38 46.01 5.14
408 410 3.376078 CGGGAAAGGGGACGACGA 61.376 66.667 0.00 0.00 0.00 4.20
433 438 1.301716 GTCCCTTCGACTTGCTGCA 60.302 57.895 0.00 0.00 38.57 4.41
450 455 4.140599 AGCTGCCGGAGAAGAGCG 62.141 66.667 5.05 0.00 36.52 5.03
601 607 3.470567 CGCCGTCGCTGACTTGTC 61.471 66.667 7.03 0.00 0.00 3.18
732 738 2.379634 CGCCGACGCATTTGAGACA 61.380 57.895 0.00 0.00 34.03 3.41
780 821 3.916405 AACGCGTTTTTGGTTTGAATG 57.084 38.095 20.79 0.00 0.00 2.67
791 832 0.800012 GTTTGAATGGGCGCGTTAGA 59.200 50.000 8.43 0.00 0.00 2.10
809 850 1.968493 AGACCTCTACTTTTGTCCGCA 59.032 47.619 0.00 0.00 0.00 5.69
815 856 1.393539 CTACTTTTGTCCGCACCGATG 59.606 52.381 0.00 0.00 0.00 3.84
929 978 3.102097 GCAAGTAGCGGTGATGGC 58.898 61.111 0.00 0.00 0.00 4.40
931 980 1.709147 GCAAGTAGCGGTGATGGCAG 61.709 60.000 0.00 0.00 0.00 4.85
934 983 1.521681 GTAGCGGTGATGGCAGGAC 60.522 63.158 0.00 0.00 0.00 3.85
935 984 3.076258 TAGCGGTGATGGCAGGACG 62.076 63.158 0.00 0.00 0.00 4.79
941 990 4.530857 GATGGCAGGACGGGACCG 62.531 72.222 9.56 9.56 46.03 4.79
1104 1155 0.252467 ACTCCCTCACCTCCCTTCTG 60.252 60.000 0.00 0.00 0.00 3.02
1174 1225 3.393970 CCTTCTCCCAGCTCCGCA 61.394 66.667 0.00 0.00 0.00 5.69
1219 1270 2.040988 TCCGCCCCATCATCTCCA 60.041 61.111 0.00 0.00 0.00 3.86
1290 1341 4.465446 TCCCTCTCCCTCGGCCTG 62.465 72.222 0.00 0.00 0.00 4.85
1467 1518 4.451150 CTCGCCGCCTACCAGCAA 62.451 66.667 0.00 0.00 0.00 3.91
1665 1716 4.030452 GACCTGGTTGCTGCACGC 62.030 66.667 0.00 0.00 39.77 5.34
1751 1802 2.761213 GGCTGGGCAATGGGAAGG 60.761 66.667 0.00 0.00 0.00 3.46
1834 1885 2.278596 CGATCGCTGGGGTGTACG 60.279 66.667 0.26 0.00 0.00 3.67
1865 1916 1.376609 GACCATAAGGCAGCGGTTGG 61.377 60.000 0.00 0.00 39.06 3.77
2157 2211 1.676746 CATTGTCAGATGGGGCAGAG 58.323 55.000 0.00 0.00 0.00 3.35
2494 2557 4.288105 ACCAGATGATTGATAGTGGGATCC 59.712 45.833 1.92 1.92 0.00 3.36
2569 2632 4.599047 CTTGTGACTCAAGGAGAAGAGT 57.401 45.455 9.02 0.00 46.85 3.24
2687 2750 2.092049 AGGCAGAATGGATGCTCAATCA 60.092 45.455 0.00 0.00 43.35 2.57
2731 2794 1.743431 CGATGTGGGCAGCATTAGTCA 60.743 52.381 0.00 0.00 0.00 3.41
2783 2846 0.827507 GGTGAAAGGGCAGCAAGGAA 60.828 55.000 0.00 0.00 36.35 3.36
2793 2856 2.165998 GCAGCAAGGAAACTCTTGGAT 58.834 47.619 6.71 0.00 43.06 3.41
2877 2940 2.034878 TGGGATGAGCTAGCAGTAGTG 58.965 52.381 18.83 0.00 0.00 2.74
2906 2969 2.094700 TGATGCGAGACTTAGGTGTCAC 60.095 50.000 3.02 0.00 39.27 3.67
3096 3159 3.512329 TCGTAGAGTAAACCAGGCAATGA 59.488 43.478 0.00 0.00 0.00 2.57
3275 3361 6.201425 TGAACAAGACACGTTTATAACTGACC 59.799 38.462 0.00 0.00 0.00 4.02
3277 3366 4.877378 AGACACGTTTATAACTGACCCA 57.123 40.909 0.00 0.00 0.00 4.51
3362 3467 5.048713 GTGCTGCTTGTTAGGTAATGTTCTT 60.049 40.000 0.00 0.00 0.00 2.52
3363 3468 5.534654 TGCTGCTTGTTAGGTAATGTTCTTT 59.465 36.000 0.00 0.00 0.00 2.52
3371 3476 7.446769 TGTTAGGTAATGTTCTTTCAGCACTA 58.553 34.615 0.00 0.00 0.00 2.74
3373 3478 8.780249 GTTAGGTAATGTTCTTTCAGCACTAAA 58.220 33.333 0.00 0.00 0.00 1.85
3380 3485 9.468532 AATGTTCTTTCAGCACTAAAGATTTTC 57.531 29.630 8.41 3.17 41.34 2.29
3491 3596 7.917505 CCAAAGATGGTACTAATGAATTTCAGC 59.082 37.037 5.21 0.00 42.18 4.26
3505 3610 1.032014 TTCAGCTTGAAACCTGTGCC 58.968 50.000 0.00 0.00 32.71 5.01
3528 3633 6.238484 GCCTTTGTAGGTCATATTGATGTGAC 60.238 42.308 11.14 11.14 44.90 3.67
3551 3661 3.084039 TGGCTAAATTCTTGTCTGCTGG 58.916 45.455 0.00 0.00 0.00 4.85
3863 4002 2.290071 GCAAAGTAACTAGGCAGGTGGA 60.290 50.000 0.00 0.00 0.00 4.02
3864 4003 3.809324 GCAAAGTAACTAGGCAGGTGGAA 60.809 47.826 0.00 0.00 0.00 3.53
3865 4004 3.983044 AAGTAACTAGGCAGGTGGAAG 57.017 47.619 0.00 0.00 0.00 3.46
3866 4005 2.903926 AGTAACTAGGCAGGTGGAAGT 58.096 47.619 0.00 0.00 0.00 3.01
3867 4006 4.057063 AGTAACTAGGCAGGTGGAAGTA 57.943 45.455 0.00 0.00 0.00 2.24
3868 4007 4.621769 AGTAACTAGGCAGGTGGAAGTAT 58.378 43.478 0.00 0.00 0.00 2.12
3869 4008 5.030820 AGTAACTAGGCAGGTGGAAGTATT 58.969 41.667 0.00 0.00 0.00 1.89
3871 4010 4.489306 ACTAGGCAGGTGGAAGTATTTC 57.511 45.455 0.00 0.00 0.00 2.17
3872 4011 4.104831 ACTAGGCAGGTGGAAGTATTTCT 58.895 43.478 0.00 0.00 33.68 2.52
3873 4012 3.636153 AGGCAGGTGGAAGTATTTCTC 57.364 47.619 0.00 0.00 33.68 2.87
3874 4013 3.185455 AGGCAGGTGGAAGTATTTCTCT 58.815 45.455 0.00 0.00 33.68 3.10
3875 4014 4.362677 AGGCAGGTGGAAGTATTTCTCTA 58.637 43.478 0.00 0.00 33.68 2.43
3876 4015 4.783227 AGGCAGGTGGAAGTATTTCTCTAA 59.217 41.667 0.00 0.00 33.68 2.10
3877 4016 5.250774 AGGCAGGTGGAAGTATTTCTCTAAA 59.749 40.000 0.00 0.00 33.68 1.85
3878 4017 5.354513 GGCAGGTGGAAGTATTTCTCTAAAC 59.645 44.000 0.00 0.00 33.68 2.01
3879 4018 5.063564 GCAGGTGGAAGTATTTCTCTAAACG 59.936 44.000 0.00 0.00 33.68 3.60
3880 4019 5.581085 CAGGTGGAAGTATTTCTCTAAACGG 59.419 44.000 0.00 0.00 33.68 4.44
3881 4020 5.482878 AGGTGGAAGTATTTCTCTAAACGGA 59.517 40.000 0.00 0.00 33.68 4.69
3882 4021 6.013984 AGGTGGAAGTATTTCTCTAAACGGAA 60.014 38.462 0.00 0.00 33.68 4.30
3885 4024 8.175716 GTGGAAGTATTTCTCTAAACGGAAATG 58.824 37.037 10.08 0.00 40.78 2.32
3886 4025 7.335924 TGGAAGTATTTCTCTAAACGGAAATGG 59.664 37.037 10.08 0.00 40.78 3.16
3887 4026 7.201705 GGAAGTATTTCTCTAAACGGAAATGGG 60.202 40.741 10.08 0.00 40.78 4.00
3888 4027 6.718294 AGTATTTCTCTAAACGGAAATGGGT 58.282 36.000 10.08 0.00 40.78 4.51
3889 4028 6.822170 AGTATTTCTCTAAACGGAAATGGGTC 59.178 38.462 10.08 1.44 40.78 4.46
3890 4029 4.627284 TTCTCTAAACGGAAATGGGTCA 57.373 40.909 0.00 0.00 0.00 4.02
3891 4030 3.934068 TCTCTAAACGGAAATGGGTCAC 58.066 45.455 0.00 0.00 0.00 3.67
3892 4031 2.671396 CTCTAAACGGAAATGGGTCACG 59.329 50.000 0.00 0.00 0.00 4.35
3893 4032 2.037511 TCTAAACGGAAATGGGTCACGT 59.962 45.455 0.00 0.00 39.74 4.49
3894 4033 2.547299 AAACGGAAATGGGTCACGTA 57.453 45.000 0.00 0.00 36.69 3.57
3895 4034 1.799544 AACGGAAATGGGTCACGTAC 58.200 50.000 0.00 0.00 36.69 3.67
3896 4035 0.388907 ACGGAAATGGGTCACGTACG 60.389 55.000 15.01 15.01 35.85 3.67
3897 4036 0.109179 CGGAAATGGGTCACGTACGA 60.109 55.000 24.41 0.00 0.00 3.43
3898 4037 1.470285 CGGAAATGGGTCACGTACGAT 60.470 52.381 24.41 3.10 0.00 3.73
3899 4038 1.931172 GGAAATGGGTCACGTACGATG 59.069 52.381 24.41 16.05 0.00 3.84
3900 4039 2.417651 GGAAATGGGTCACGTACGATGA 60.418 50.000 24.41 18.10 0.00 2.92
3901 4040 3.255725 GAAATGGGTCACGTACGATGAA 58.744 45.455 24.41 7.60 0.00 2.57
3902 4041 3.322211 AATGGGTCACGTACGATGAAA 57.678 42.857 24.41 10.89 0.00 2.69
3903 4042 2.357327 TGGGTCACGTACGATGAAAG 57.643 50.000 24.41 4.40 0.00 2.62
3904 4043 0.997196 GGGTCACGTACGATGAAAGC 59.003 55.000 24.41 10.88 0.00 3.51
3905 4044 1.403780 GGGTCACGTACGATGAAAGCT 60.404 52.381 24.41 0.00 0.00 3.74
3906 4045 2.334838 GGTCACGTACGATGAAAGCTT 58.665 47.619 24.41 0.00 0.00 3.74
3907 4046 2.092211 GGTCACGTACGATGAAAGCTTG 59.908 50.000 24.41 6.32 0.00 4.01
3908 4047 2.729882 GTCACGTACGATGAAAGCTTGT 59.270 45.455 24.41 0.00 0.00 3.16
3909 4048 2.984471 TCACGTACGATGAAAGCTTGTC 59.016 45.455 24.41 0.48 0.00 3.18
3910 4049 2.092211 CACGTACGATGAAAGCTTGTCC 59.908 50.000 24.41 0.00 0.00 4.02
3911 4050 2.288579 ACGTACGATGAAAGCTTGTCCA 60.289 45.455 24.41 0.00 0.00 4.02
3912 4051 2.734606 CGTACGATGAAAGCTTGTCCAA 59.265 45.455 10.44 0.00 0.00 3.53
3913 4052 3.370978 CGTACGATGAAAGCTTGTCCAAT 59.629 43.478 10.44 0.00 0.00 3.16
3914 4053 4.142902 CGTACGATGAAAGCTTGTCCAATT 60.143 41.667 10.44 0.00 0.00 2.32
3915 4054 4.853924 ACGATGAAAGCTTGTCCAATTT 57.146 36.364 0.00 0.00 0.00 1.82
3916 4055 4.549458 ACGATGAAAGCTTGTCCAATTTG 58.451 39.130 0.00 0.00 0.00 2.32
3917 4056 3.922240 CGATGAAAGCTTGTCCAATTTGG 59.078 43.478 9.28 9.28 39.43 3.28
3918 4057 4.559300 CGATGAAAGCTTGTCCAATTTGGT 60.559 41.667 14.98 0.00 39.03 3.67
3919 4058 5.335583 CGATGAAAGCTTGTCCAATTTGGTA 60.336 40.000 14.98 3.48 39.03 3.25
3920 4059 5.195001 TGAAAGCTTGTCCAATTTGGTAC 57.805 39.130 14.98 11.89 39.03 3.34
3921 4060 4.038642 TGAAAGCTTGTCCAATTTGGTACC 59.961 41.667 14.98 4.43 39.03 3.34
3922 4061 3.237268 AGCTTGTCCAATTTGGTACCA 57.763 42.857 11.60 11.60 39.03 3.25
3923 4062 3.778265 AGCTTGTCCAATTTGGTACCAT 58.222 40.909 17.17 0.00 39.03 3.55
3924 4063 4.929479 AGCTTGTCCAATTTGGTACCATA 58.071 39.130 17.17 12.04 39.03 2.74
3925 4064 5.329399 AGCTTGTCCAATTTGGTACCATAA 58.671 37.500 17.17 13.13 39.03 1.90
3926 4065 5.957774 AGCTTGTCCAATTTGGTACCATAAT 59.042 36.000 17.17 14.78 39.03 1.28
3927 4066 7.122715 AGCTTGTCCAATTTGGTACCATAATA 58.877 34.615 17.17 0.00 39.03 0.98
3928 4067 7.285401 AGCTTGTCCAATTTGGTACCATAATAG 59.715 37.037 17.17 12.52 39.03 1.73
3929 4068 7.068226 GCTTGTCCAATTTGGTACCATAATAGT 59.932 37.037 17.17 0.00 39.03 2.12
3930 4069 7.873719 TGTCCAATTTGGTACCATAATAGTG 57.126 36.000 17.17 12.99 39.03 2.74
3931 4070 6.320164 TGTCCAATTTGGTACCATAATAGTGC 59.680 38.462 17.17 10.05 39.03 4.40
3932 4071 6.320164 GTCCAATTTGGTACCATAATAGTGCA 59.680 38.462 17.17 0.00 39.03 4.57
3933 4072 6.892456 TCCAATTTGGTACCATAATAGTGCAA 59.108 34.615 17.17 3.69 39.03 4.08
3934 4073 7.563188 TCCAATTTGGTACCATAATAGTGCAAT 59.437 33.333 17.17 6.13 39.03 3.56
3935 4074 7.867403 CCAATTTGGTACCATAATAGTGCAATC 59.133 37.037 17.17 0.00 31.35 2.67
3936 4075 6.952773 TTTGGTACCATAATAGTGCAATCC 57.047 37.500 17.17 0.00 0.00 3.01
3937 4076 5.638530 TGGTACCATAATAGTGCAATCCA 57.361 39.130 11.60 0.00 0.00 3.41
3938 4077 5.373222 TGGTACCATAATAGTGCAATCCAC 58.627 41.667 11.60 0.00 45.01 4.02
3939 4078 4.760204 GGTACCATAATAGTGCAATCCACC 59.240 45.833 7.15 0.00 45.83 4.61
3940 4079 3.476552 ACCATAATAGTGCAATCCACCG 58.523 45.455 0.00 0.00 45.83 4.94
3941 4080 3.118038 ACCATAATAGTGCAATCCACCGT 60.118 43.478 0.00 0.00 45.83 4.83
3942 4081 3.250762 CCATAATAGTGCAATCCACCGTG 59.749 47.826 0.00 0.00 45.83 4.94
3943 4082 2.779755 AATAGTGCAATCCACCGTGA 57.220 45.000 0.00 0.00 45.83 4.35
3944 4083 2.779755 ATAGTGCAATCCACCGTGAA 57.220 45.000 0.00 0.00 45.83 3.18
3945 4084 1.803334 TAGTGCAATCCACCGTGAAC 58.197 50.000 0.00 0.00 45.83 3.18
3946 4085 0.889186 AGTGCAATCCACCGTGAACC 60.889 55.000 0.00 0.00 45.83 3.62
3947 4086 1.602323 TGCAATCCACCGTGAACCC 60.602 57.895 0.00 0.00 0.00 4.11
3948 4087 1.602323 GCAATCCACCGTGAACCCA 60.602 57.895 0.00 0.00 0.00 4.51
3949 4088 1.862602 GCAATCCACCGTGAACCCAC 61.863 60.000 0.00 0.00 39.86 4.61
3950 4089 1.074248 AATCCACCGTGAACCCACC 59.926 57.895 0.00 0.00 40.12 4.61
3951 4090 1.423794 AATCCACCGTGAACCCACCT 61.424 55.000 0.00 0.00 40.12 4.00
3952 4091 1.423794 ATCCACCGTGAACCCACCTT 61.424 55.000 0.00 0.00 40.12 3.50
3953 4092 1.896660 CCACCGTGAACCCACCTTG 60.897 63.158 0.00 0.00 40.12 3.61
3954 4093 1.147376 CACCGTGAACCCACCTTGA 59.853 57.895 0.00 0.00 40.12 3.02
3955 4094 0.884704 CACCGTGAACCCACCTTGAG 60.885 60.000 0.00 0.00 40.12 3.02
3956 4095 1.966451 CCGTGAACCCACCTTGAGC 60.966 63.158 0.00 0.00 40.12 4.26
3957 4096 1.966451 CGTGAACCCACCTTGAGCC 60.966 63.158 0.00 0.00 40.12 4.70
3958 4097 1.150536 GTGAACCCACCTTGAGCCA 59.849 57.895 0.00 0.00 37.33 4.75
3959 4098 0.890996 GTGAACCCACCTTGAGCCAG 60.891 60.000 0.00 0.00 37.33 4.85
3960 4099 1.973812 GAACCCACCTTGAGCCAGC 60.974 63.158 0.00 0.00 0.00 4.85
3961 4100 3.850098 AACCCACCTTGAGCCAGCG 62.850 63.158 0.00 0.00 0.00 5.18
3962 4101 4.335647 CCCACCTTGAGCCAGCGT 62.336 66.667 0.00 0.00 0.00 5.07
3963 4102 2.281761 CCACCTTGAGCCAGCGTT 60.282 61.111 0.00 0.00 0.00 4.84
3964 4103 1.003839 CCACCTTGAGCCAGCGTTA 60.004 57.895 0.00 0.00 0.00 3.18
3965 4104 0.605319 CCACCTTGAGCCAGCGTTAA 60.605 55.000 0.00 0.00 0.00 2.01
3966 4105 1.453155 CACCTTGAGCCAGCGTTAAT 58.547 50.000 0.00 0.00 0.00 1.40
3967 4106 1.398390 CACCTTGAGCCAGCGTTAATC 59.602 52.381 0.00 0.00 0.00 1.75
3968 4107 1.003118 ACCTTGAGCCAGCGTTAATCA 59.997 47.619 0.00 0.00 0.00 2.57
3969 4108 2.083774 CCTTGAGCCAGCGTTAATCAA 58.916 47.619 0.00 0.00 0.00 2.57
3970 4109 2.159517 CCTTGAGCCAGCGTTAATCAAC 60.160 50.000 0.00 0.00 0.00 3.18
3994 4133 5.998454 GTAGCCATACTACTTCGTACAGA 57.002 43.478 0.00 0.00 46.65 3.41
3995 4134 6.369059 GTAGCCATACTACTTCGTACAGAA 57.631 41.667 0.00 0.00 46.65 3.02
3996 4135 5.909621 AGCCATACTACTTCGTACAGAAA 57.090 39.130 0.00 0.00 38.57 2.52
3997 4136 6.466885 AGCCATACTACTTCGTACAGAAAT 57.533 37.500 0.00 0.00 38.57 2.17
3998 4137 6.505272 AGCCATACTACTTCGTACAGAAATC 58.495 40.000 0.00 0.00 38.57 2.17
3999 4138 5.398711 GCCATACTACTTCGTACAGAAATCG 59.601 44.000 0.00 0.00 38.57 3.34
4000 4139 6.493116 CCATACTACTTCGTACAGAAATCGT 58.507 40.000 0.00 0.00 38.57 3.73
4001 4140 7.633621 CCATACTACTTCGTACAGAAATCGTA 58.366 38.462 0.00 0.00 38.57 3.43
4002 4141 8.124823 CCATACTACTTCGTACAGAAATCGTAA 58.875 37.037 0.00 0.00 38.57 3.18
4003 4142 9.494479 CATACTACTTCGTACAGAAATCGTAAA 57.506 33.333 0.00 0.00 38.57 2.01
4009 4148 9.798994 ACTTCGTACAGAAATCGTAAATATTCT 57.201 29.630 0.00 0.00 38.57 2.40
4020 4159 9.882996 AAATCGTAAATATTCTATCGTACGTGA 57.117 29.630 16.05 9.46 36.58 4.35
4021 4160 9.882996 AATCGTAAATATTCTATCGTACGTGAA 57.117 29.630 16.05 17.05 36.58 3.18
4022 4161 8.924262 TCGTAAATATTCTATCGTACGTGAAG 57.076 34.615 16.05 11.02 36.58 3.02
4023 4162 7.531871 TCGTAAATATTCTATCGTACGTGAAGC 59.468 37.037 16.05 5.83 36.58 3.86
4024 4163 7.321984 CGTAAATATTCTATCGTACGTGAAGCA 59.678 37.037 16.05 10.35 31.97 3.91
4025 4164 7.624706 AAATATTCTATCGTACGTGAAGCAG 57.375 36.000 16.05 4.92 0.00 4.24
4026 4165 4.634184 ATTCTATCGTACGTGAAGCAGT 57.366 40.909 16.05 1.67 0.00 4.40
4027 4166 3.400505 TCTATCGTACGTGAAGCAGTG 57.599 47.619 16.05 0.00 0.00 3.66
4028 4167 1.846782 CTATCGTACGTGAAGCAGTGC 59.153 52.381 16.05 7.13 0.00 4.40
4029 4168 0.243907 ATCGTACGTGAAGCAGTGCT 59.756 50.000 13.14 13.14 42.56 4.40
4030 4169 0.386858 TCGTACGTGAAGCAGTGCTC 60.387 55.000 20.03 12.48 38.25 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.167219 CGCCGCAACTCATCGTCAT 61.167 57.895 0.00 0.00 0.00 3.06
381 383 1.078426 CCTTTCCCGCGGAGTTCAT 60.078 57.895 30.73 0.00 31.21 2.57
395 397 3.703127 GCCCTCGTCGTCCCCTTT 61.703 66.667 0.00 0.00 0.00 3.11
415 417 1.294659 CTGCAGCAAGTCGAAGGGAC 61.295 60.000 0.00 0.00 46.45 4.46
416 418 1.004560 CTGCAGCAAGTCGAAGGGA 60.005 57.895 0.00 0.00 0.00 4.20
433 438 4.140599 CGCTCTTCTCCGGCAGCT 62.141 66.667 0.00 0.00 0.00 4.24
578 584 4.063967 TCAGCGACGGCGGTCATT 62.064 61.111 14.98 8.29 46.64 2.57
601 607 3.493503 GCTTAATTTATGACCTCGGACCG 59.506 47.826 7.84 7.84 0.00 4.79
630 636 2.529389 AACTTCCTGCCCCCTCGT 60.529 61.111 0.00 0.00 0.00 4.18
643 649 2.113139 CTGGCGGTCACCCAACTT 59.887 61.111 0.00 0.00 30.66 2.66
746 765 3.698463 CGTTTGCTTCGCGTCCGT 61.698 61.111 5.77 0.00 35.54 4.69
759 778 3.062774 CCATTCAAACCAAAAACGCGTTT 59.937 39.130 30.36 30.36 0.00 3.60
777 818 1.153429 GAGGTCTAACGCGCCCATT 60.153 57.895 5.73 0.00 0.00 3.16
780 821 1.065436 GTAGAGGTCTAACGCGCCC 59.935 63.158 5.73 0.00 0.00 6.13
791 832 1.270678 GGTGCGGACAAAAGTAGAGGT 60.271 52.381 9.96 0.00 0.00 3.85
809 850 2.740826 CCGTCCGTTTGCATCGGT 60.741 61.111 23.47 0.00 46.86 4.69
929 978 2.056223 ATGTACCGGTCCCGTCCTG 61.056 63.158 12.40 0.00 37.81 3.86
931 980 2.288788 GACATGTACCGGTCCCGTCC 62.289 65.000 12.40 0.00 37.81 4.79
934 983 1.153706 GTGACATGTACCGGTCCCG 60.154 63.158 12.40 0.05 39.44 5.14
935 984 1.219935 GGTGACATGTACCGGTCCC 59.780 63.158 12.40 3.21 33.09 4.46
936 985 4.926207 GGTGACATGTACCGGTCC 57.074 61.111 12.40 0.00 33.09 4.46
941 990 0.515564 GTGTTGCGGTGACATGTACC 59.484 55.000 0.00 6.38 34.81 3.34
943 992 0.946700 CGGTGTTGCGGTGACATGTA 60.947 55.000 0.00 0.00 0.00 2.29
988 1037 2.673523 GGACATGGGAGCTGCTGT 59.326 61.111 7.01 1.91 0.00 4.40
1153 1204 2.185608 GAGCTGGGAGAAGGCGAC 59.814 66.667 0.00 0.00 0.00 5.19
1219 1270 3.083997 GCCGTGGAGGTGGAGGAT 61.084 66.667 0.00 0.00 43.70 3.24
1491 1542 2.036098 TAGGTGAAGGCGTCCGGA 59.964 61.111 0.00 0.00 0.00 5.14
1639 1690 2.203877 AACCAGGTCCCCGCACTA 60.204 61.111 0.00 0.00 0.00 2.74
1665 1716 1.019278 CCATTCCGTCGAACACCCTG 61.019 60.000 0.00 0.00 0.00 4.45
1751 1802 3.056328 GAAACAGCTCCACCGCCC 61.056 66.667 0.00 0.00 0.00 6.13
1834 1885 3.050619 CCTTATGGTCGCGTATCTTGAC 58.949 50.000 5.77 0.00 0.00 3.18
1865 1916 0.832135 TACCATCTCCCGGATCAGCC 60.832 60.000 0.73 0.00 31.27 4.85
2002 2053 1.939838 GCTTACACTCTGTTCCCCGTG 60.940 57.143 0.00 0.00 0.00 4.94
2055 2106 2.549563 CCTGTGAGCGCAATCCATATCT 60.550 50.000 11.47 0.00 0.00 1.98
2157 2211 2.284190 CGAAGAAATCTGGAAGCCTCC 58.716 52.381 0.00 0.00 42.81 4.30
2494 2557 3.949754 ACCATGATAATGTTGTCTGGCTG 59.050 43.478 0.00 0.00 0.00 4.85
2599 2662 0.615331 TGCTCTGTCTGGGGCTTTAG 59.385 55.000 0.00 0.00 0.00 1.85
2687 2750 3.416156 GGTGTTGGAATGAAAGAGCTCT 58.584 45.455 11.45 11.45 0.00 4.09
2731 2794 1.687612 CCCTGTCATGACAAGCCCT 59.312 57.895 27.63 0.00 41.33 5.19
2783 2846 5.523588 TCTCTGTCCTCATATCCAAGAGTT 58.476 41.667 0.00 0.00 0.00 3.01
2793 2856 2.702478 CCCAGCATTCTCTGTCCTCATA 59.298 50.000 0.00 0.00 32.32 2.15
2877 2940 0.459489 AGTCTCGCATCAGCTTCCTC 59.541 55.000 0.00 0.00 39.10 3.71
2906 2969 2.919494 GCCAACCCAGGTGCTTTCG 61.919 63.158 0.00 0.00 0.00 3.46
3096 3159 6.385649 TTTACAAGAAAAATCAGGACGCTT 57.614 33.333 0.00 0.00 0.00 4.68
3275 3361 2.859273 AAAGGCAGACGCGGAGATGG 62.859 60.000 12.47 0.00 39.92 3.51
3277 3366 0.179108 GTAAAGGCAGACGCGGAGAT 60.179 55.000 12.47 0.00 39.92 2.75
3362 3467 6.009589 TGGATGGAAAATCTTTAGTGCTGAA 58.990 36.000 0.00 0.00 0.00 3.02
3363 3468 5.569355 TGGATGGAAAATCTTTAGTGCTGA 58.431 37.500 0.00 0.00 0.00 4.26
3491 3596 3.004734 CCTACAAAGGCACAGGTTTCAAG 59.995 47.826 0.00 0.00 35.64 3.02
3505 3610 8.393366 CAAGTCACATCAATATGACCTACAAAG 58.607 37.037 0.00 0.00 45.28 2.77
3528 3633 4.380233 CCAGCAGACAAGAATTTAGCCAAG 60.380 45.833 0.00 0.00 0.00 3.61
3551 3661 8.414003 CCCAATTACTAGCTTAAATTTCCCTTC 58.586 37.037 0.00 0.00 0.00 3.46
3718 3828 8.265764 AGATTTTTATGACTAACAGGGTAGGAC 58.734 37.037 0.00 0.00 0.00 3.85
3863 4002 7.173032 ACCCATTTCCGTTTAGAGAAATACTT 58.827 34.615 0.00 0.00 39.97 2.24
3864 4003 6.718294 ACCCATTTCCGTTTAGAGAAATACT 58.282 36.000 0.00 0.00 39.97 2.12
3865 4004 6.596497 TGACCCATTTCCGTTTAGAGAAATAC 59.404 38.462 0.00 0.00 39.97 1.89
3866 4005 6.596497 GTGACCCATTTCCGTTTAGAGAAATA 59.404 38.462 0.00 0.00 39.97 1.40
3867 4006 5.414765 GTGACCCATTTCCGTTTAGAGAAAT 59.585 40.000 0.00 0.00 42.08 2.17
3868 4007 4.758165 GTGACCCATTTCCGTTTAGAGAAA 59.242 41.667 0.00 0.00 36.48 2.52
3869 4008 4.320870 GTGACCCATTTCCGTTTAGAGAA 58.679 43.478 0.00 0.00 0.00 2.87
3871 4010 2.671396 CGTGACCCATTTCCGTTTAGAG 59.329 50.000 0.00 0.00 0.00 2.43
3872 4011 2.037511 ACGTGACCCATTTCCGTTTAGA 59.962 45.455 0.00 0.00 0.00 2.10
3873 4012 2.419667 ACGTGACCCATTTCCGTTTAG 58.580 47.619 0.00 0.00 0.00 1.85
3874 4013 2.547299 ACGTGACCCATTTCCGTTTA 57.453 45.000 0.00 0.00 0.00 2.01
3875 4014 2.145536 GTACGTGACCCATTTCCGTTT 58.854 47.619 0.00 0.00 33.32 3.60
3876 4015 1.799544 GTACGTGACCCATTTCCGTT 58.200 50.000 0.00 0.00 33.32 4.44
3877 4016 0.388907 CGTACGTGACCCATTTCCGT 60.389 55.000 7.22 0.00 35.68 4.69
3878 4017 0.109179 TCGTACGTGACCCATTTCCG 60.109 55.000 16.05 0.00 0.00 4.30
3879 4018 1.931172 CATCGTACGTGACCCATTTCC 59.069 52.381 16.05 0.00 0.00 3.13
3880 4019 2.883574 TCATCGTACGTGACCCATTTC 58.116 47.619 16.05 0.00 0.00 2.17
3881 4020 3.322211 TTCATCGTACGTGACCCATTT 57.678 42.857 16.05 0.00 0.00 2.32
3882 4021 3.259064 CTTTCATCGTACGTGACCCATT 58.741 45.455 16.05 0.00 0.00 3.16
3885 4024 0.997196 GCTTTCATCGTACGTGACCC 59.003 55.000 16.05 5.72 0.00 4.46
3886 4025 1.992170 AGCTTTCATCGTACGTGACC 58.008 50.000 16.05 8.97 0.00 4.02
3887 4026 2.729882 ACAAGCTTTCATCGTACGTGAC 59.270 45.455 16.05 6.93 0.00 3.67
3888 4027 2.984471 GACAAGCTTTCATCGTACGTGA 59.016 45.455 16.05 14.80 0.00 4.35
3889 4028 2.092211 GGACAAGCTTTCATCGTACGTG 59.908 50.000 16.05 12.72 0.00 4.49
3890 4029 2.288579 TGGACAAGCTTTCATCGTACGT 60.289 45.455 16.05 0.00 0.00 3.57
3891 4030 2.333926 TGGACAAGCTTTCATCGTACG 58.666 47.619 9.53 9.53 0.00 3.67
3892 4031 4.946784 ATTGGACAAGCTTTCATCGTAC 57.053 40.909 0.00 0.00 0.00 3.67
3893 4032 5.335583 CCAAATTGGACAAGCTTTCATCGTA 60.336 40.000 6.04 0.00 40.96 3.43
3894 4033 4.549458 CAAATTGGACAAGCTTTCATCGT 58.451 39.130 0.00 0.00 0.00 3.73
3895 4034 3.922240 CCAAATTGGACAAGCTTTCATCG 59.078 43.478 6.04 0.00 40.96 3.84
3896 4035 4.886579 ACCAAATTGGACAAGCTTTCATC 58.113 39.130 20.25 0.00 40.96 2.92
3897 4036 4.961438 ACCAAATTGGACAAGCTTTCAT 57.039 36.364 20.25 0.00 40.96 2.57
3898 4037 4.038642 GGTACCAAATTGGACAAGCTTTCA 59.961 41.667 20.25 0.00 40.96 2.69
3899 4038 4.038642 TGGTACCAAATTGGACAAGCTTTC 59.961 41.667 20.25 0.00 40.96 2.62
3900 4039 3.964031 TGGTACCAAATTGGACAAGCTTT 59.036 39.130 20.25 0.00 40.96 3.51
3901 4040 3.571590 TGGTACCAAATTGGACAAGCTT 58.428 40.909 20.25 0.00 40.96 3.74
3902 4041 3.237268 TGGTACCAAATTGGACAAGCT 57.763 42.857 20.25 0.00 40.96 3.74
3903 4042 5.652994 TTATGGTACCAAATTGGACAAGC 57.347 39.130 20.76 12.94 40.96 4.01
3904 4043 8.405531 CACTATTATGGTACCAAATTGGACAAG 58.594 37.037 20.76 13.68 40.96 3.16
3905 4044 7.147983 GCACTATTATGGTACCAAATTGGACAA 60.148 37.037 20.76 6.58 40.96 3.18
3906 4045 6.320164 GCACTATTATGGTACCAAATTGGACA 59.680 38.462 20.76 14.19 40.96 4.02
3907 4046 6.320164 TGCACTATTATGGTACCAAATTGGAC 59.680 38.462 20.76 11.92 40.96 4.02
3908 4047 6.427441 TGCACTATTATGGTACCAAATTGGA 58.573 36.000 20.76 13.21 40.96 3.53
3909 4048 6.707440 TGCACTATTATGGTACCAAATTGG 57.293 37.500 20.76 11.02 45.02 3.16
3910 4049 7.867403 GGATTGCACTATTATGGTACCAAATTG 59.133 37.037 20.76 19.81 0.00 2.32
3911 4050 7.563188 TGGATTGCACTATTATGGTACCAAATT 59.437 33.333 20.76 5.03 0.00 1.82
3912 4051 7.014230 GTGGATTGCACTATTATGGTACCAAAT 59.986 37.037 20.76 19.93 0.00 2.32
3913 4052 6.320164 GTGGATTGCACTATTATGGTACCAAA 59.680 38.462 20.76 14.56 0.00 3.28
3914 4053 5.825679 GTGGATTGCACTATTATGGTACCAA 59.174 40.000 20.76 3.13 0.00 3.67
3915 4054 5.373222 GTGGATTGCACTATTATGGTACCA 58.627 41.667 18.99 18.99 0.00 3.25
3916 4055 4.760204 GGTGGATTGCACTATTATGGTACC 59.240 45.833 4.43 4.43 0.00 3.34
3917 4056 4.451096 CGGTGGATTGCACTATTATGGTAC 59.549 45.833 8.27 0.00 0.00 3.34
3918 4057 4.101898 ACGGTGGATTGCACTATTATGGTA 59.898 41.667 8.27 0.00 0.00 3.25
3919 4058 3.118038 ACGGTGGATTGCACTATTATGGT 60.118 43.478 8.27 0.00 0.00 3.55
3920 4059 3.250762 CACGGTGGATTGCACTATTATGG 59.749 47.826 8.27 0.00 0.00 2.74
3921 4060 4.126437 TCACGGTGGATTGCACTATTATG 58.874 43.478 8.50 1.00 0.00 1.90
3922 4061 4.415881 TCACGGTGGATTGCACTATTAT 57.584 40.909 8.50 0.00 0.00 1.28
3923 4062 3.897141 TCACGGTGGATTGCACTATTA 57.103 42.857 8.50 0.00 0.00 0.98
3924 4063 2.747446 GTTCACGGTGGATTGCACTATT 59.253 45.455 8.50 0.00 0.00 1.73
3925 4064 2.356135 GTTCACGGTGGATTGCACTAT 58.644 47.619 8.50 0.00 0.00 2.12
3926 4065 1.609580 GGTTCACGGTGGATTGCACTA 60.610 52.381 8.50 0.00 0.00 2.74
3927 4066 0.889186 GGTTCACGGTGGATTGCACT 60.889 55.000 8.50 0.00 0.00 4.40
3928 4067 1.579429 GGTTCACGGTGGATTGCAC 59.421 57.895 8.50 0.00 0.00 4.57
3929 4068 1.602323 GGGTTCACGGTGGATTGCA 60.602 57.895 8.50 0.00 0.00 4.08
3930 4069 1.602323 TGGGTTCACGGTGGATTGC 60.602 57.895 8.50 0.00 0.00 3.56
3931 4070 1.241315 GGTGGGTTCACGGTGGATTG 61.241 60.000 8.50 0.00 44.50 2.67
3932 4071 1.074248 GGTGGGTTCACGGTGGATT 59.926 57.895 8.50 0.00 44.50 3.01
3933 4072 1.423794 AAGGTGGGTTCACGGTGGAT 61.424 55.000 8.50 0.00 44.50 3.41
3934 4073 2.073716 AAGGTGGGTTCACGGTGGA 61.074 57.895 8.50 0.00 44.50 4.02
3935 4074 1.896660 CAAGGTGGGTTCACGGTGG 60.897 63.158 8.50 0.00 44.50 4.61
3936 4075 0.884704 CTCAAGGTGGGTTCACGGTG 60.885 60.000 0.56 0.56 44.50 4.94
3937 4076 1.450211 CTCAAGGTGGGTTCACGGT 59.550 57.895 0.00 0.00 44.50 4.83
3938 4077 1.966451 GCTCAAGGTGGGTTCACGG 60.966 63.158 0.00 0.00 44.50 4.94
3939 4078 1.966451 GGCTCAAGGTGGGTTCACG 60.966 63.158 0.00 0.00 44.50 4.35
3940 4079 0.890996 CTGGCTCAAGGTGGGTTCAC 60.891 60.000 0.00 0.00 42.91 3.18
3941 4080 1.455849 CTGGCTCAAGGTGGGTTCA 59.544 57.895 0.00 0.00 0.00 3.18
3942 4081 1.973812 GCTGGCTCAAGGTGGGTTC 60.974 63.158 0.00 0.00 0.00 3.62
3943 4082 2.116125 GCTGGCTCAAGGTGGGTT 59.884 61.111 0.00 0.00 0.00 4.11
3944 4083 4.335647 CGCTGGCTCAAGGTGGGT 62.336 66.667 0.00 0.00 0.00 4.51
3945 4084 2.463589 TAACGCTGGCTCAAGGTGGG 62.464 60.000 0.00 0.00 0.00 4.61
3946 4085 0.605319 TTAACGCTGGCTCAAGGTGG 60.605 55.000 0.00 0.00 0.00 4.61
3947 4086 1.398390 GATTAACGCTGGCTCAAGGTG 59.602 52.381 0.00 0.00 0.00 4.00
3948 4087 1.003118 TGATTAACGCTGGCTCAAGGT 59.997 47.619 0.00 0.00 0.00 3.50
3949 4088 1.737838 TGATTAACGCTGGCTCAAGG 58.262 50.000 0.00 0.00 0.00 3.61
3950 4089 3.122937 GTTGATTAACGCTGGCTCAAG 57.877 47.619 0.00 0.00 0.00 3.02
3961 4100 6.760161 GTAGTATGGCTACCGTTGATTAAC 57.240 41.667 0.00 0.00 43.20 2.01
3994 4133 9.882996 TCACGTACGATAGAATATTTACGATTT 57.117 29.630 24.41 0.00 36.63 2.17
3995 4134 9.882996 TTCACGTACGATAGAATATTTACGATT 57.117 29.630 24.41 0.00 36.63 3.34
3996 4135 9.539139 CTTCACGTACGATAGAATATTTACGAT 57.461 33.333 24.41 4.31 36.63 3.73
3997 4136 7.531871 GCTTCACGTACGATAGAATATTTACGA 59.468 37.037 24.41 0.00 36.63 3.43
3998 4137 7.321984 TGCTTCACGTACGATAGAATATTTACG 59.678 37.037 24.41 11.63 38.56 3.18
3999 4138 8.498192 TGCTTCACGTACGATAGAATATTTAC 57.502 34.615 24.41 8.50 41.38 2.01
4000 4139 8.347771 ACTGCTTCACGTACGATAGAATATTTA 58.652 33.333 24.41 6.81 41.38 1.40
4001 4140 7.167635 CACTGCTTCACGTACGATAGAATATTT 59.832 37.037 24.41 5.58 41.38 1.40
4002 4141 6.637254 CACTGCTTCACGTACGATAGAATATT 59.363 38.462 24.41 6.74 41.38 1.28
4003 4142 6.143496 CACTGCTTCACGTACGATAGAATAT 58.857 40.000 24.41 6.03 41.38 1.28
4004 4143 5.507974 CACTGCTTCACGTACGATAGAATA 58.492 41.667 24.41 12.55 41.38 1.75
4005 4144 4.352039 CACTGCTTCACGTACGATAGAAT 58.648 43.478 24.41 5.27 41.38 2.40
4006 4145 3.754955 CACTGCTTCACGTACGATAGAA 58.245 45.455 24.41 19.59 41.38 2.10
4007 4146 2.477357 GCACTGCTTCACGTACGATAGA 60.477 50.000 24.41 13.59 41.38 1.98
4008 4147 1.846782 GCACTGCTTCACGTACGATAG 59.153 52.381 24.41 15.73 46.19 2.08
4009 4148 1.471287 AGCACTGCTTCACGTACGATA 59.529 47.619 24.41 6.22 33.89 2.92
4010 4149 0.243907 AGCACTGCTTCACGTACGAT 59.756 50.000 24.41 3.10 33.89 3.73
4011 4150 0.386858 GAGCACTGCTTCACGTACGA 60.387 55.000 24.41 0.00 39.88 3.43
4012 4151 0.387367 AGAGCACTGCTTCACGTACG 60.387 55.000 15.01 15.01 39.88 3.67
4013 4152 1.721926 GAAGAGCACTGCTTCACGTAC 59.278 52.381 4.67 0.00 39.88 3.67
4014 4153 1.613925 AGAAGAGCACTGCTTCACGTA 59.386 47.619 4.67 0.00 43.19 3.57
4015 4154 0.390860 AGAAGAGCACTGCTTCACGT 59.609 50.000 4.67 0.00 43.19 4.49
4016 4155 1.066914 GAGAAGAGCACTGCTTCACG 58.933 55.000 4.67 0.00 43.19 4.35
4017 4156 2.453983 AGAGAAGAGCACTGCTTCAC 57.546 50.000 4.67 0.00 43.19 3.18
4018 4157 4.607293 TTTAGAGAAGAGCACTGCTTCA 57.393 40.909 4.67 0.00 43.19 3.02
4019 4158 5.174395 TGATTTAGAGAAGAGCACTGCTTC 58.826 41.667 4.67 0.00 39.88 3.86
4020 4159 5.046735 TCTGATTTAGAGAAGAGCACTGCTT 60.047 40.000 4.67 0.00 39.88 3.91
4021 4160 4.465660 TCTGATTTAGAGAAGAGCACTGCT 59.534 41.667 2.22 2.22 43.88 4.24
4022 4161 4.753233 TCTGATTTAGAGAAGAGCACTGC 58.247 43.478 0.00 0.00 0.00 4.40
4051 4190 2.282180 GAGCCCAGGGTTTTGCGA 60.282 61.111 7.55 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.