Multiple sequence alignment - TraesCS7B01G367700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G367700 chr7B 100.000 2462 0 0 1 2462 632338599 632336138 0.000000e+00 4547.0
1 TraesCS7B01G367700 chr7B 88.206 602 66 4 925 1525 630310622 630311219 0.000000e+00 713.0
2 TraesCS7B01G367700 chr7B 90.963 509 45 1 980 1487 630552388 630552896 0.000000e+00 684.0
3 TraesCS7B01G367700 chr7B 88.821 492 54 1 975 1466 647070559 647070069 9.740000e-169 603.0
4 TraesCS7B01G367700 chr7B 94.845 97 5 0 729 825 162120908 162120812 4.240000e-33 152.0
5 TraesCS7B01G367700 chr7B 92.941 85 6 0 2374 2458 632331919 632331835 9.240000e-25 124.0
6 TraesCS7B01G367700 chr7A 90.685 730 61 5 780 1504 663498537 663497810 0.000000e+00 965.0
7 TraesCS7B01G367700 chr7A 88.980 490 52 2 1001 1489 662134222 662134710 2.710000e-169 604.0
8 TraesCS7B01G367700 chr7A 85.178 533 54 11 1120 1651 663492480 663491972 7.800000e-145 523.0
9 TraesCS7B01G367700 chr7A 84.521 407 28 15 236 634 663499023 663498644 1.080000e-98 370.0
10 TraesCS7B01G367700 chr7A 85.211 142 17 3 2317 2458 663491360 663491223 2.550000e-30 143.0
11 TraesCS7B01G367700 chr7A 96.203 79 3 0 2384 2462 663495351 663495273 1.990000e-26 130.0
12 TraesCS7B01G367700 chr7A 82.667 150 21 5 2302 2447 662175273 662175421 7.150000e-26 128.0
13 TraesCS7B01G367700 chr7A 92.941 85 6 0 151 235 663499147 663499063 9.240000e-25 124.0
14 TraesCS7B01G367700 chr7A 73.939 330 47 22 1717 2019 663496702 663496385 2.020000e-16 97.1
15 TraesCS7B01G367700 chr7A 82.400 125 6 7 1534 1644 663497832 663497710 7.250000e-16 95.3
16 TraesCS7B01G367700 chr7A 83.333 90 10 1 1929 2013 663491715 663491626 7.300000e-11 78.7
17 TraesCS7B01G367700 chr7D 91.052 637 26 15 1157 1762 573622255 573621619 0.000000e+00 832.0
18 TraesCS7B01G367700 chr7D 83.944 710 93 15 916 1622 572757308 572757999 0.000000e+00 660.0
19 TraesCS7B01G367700 chr7D 89.837 492 49 1 975 1466 580381477 580380987 4.470000e-177 630.0
20 TraesCS7B01G367700 chr7D 83.784 592 85 7 1003 1589 573460842 573460257 3.580000e-153 551.0
21 TraesCS7B01G367700 chr7D 81.126 604 46 32 1879 2462 573621619 573621064 2.930000e-114 422.0
22 TraesCS7B01G367700 chr7D 83.505 388 45 13 1270 1644 573476983 573476602 6.520000e-91 344.0
23 TraesCS7B01G367700 chr7D 85.185 162 22 2 2302 2462 573475957 573475797 5.450000e-37 165.0
24 TraesCS7B01G367700 chr7D 89.706 68 7 0 151 218 580382047 580381980 1.210000e-13 87.9
25 TraesCS7B01G367700 chr5B 95.192 104 5 0 723 826 166379080 166379183 5.450000e-37 165.0
26 TraesCS7B01G367700 chr5D 95.050 101 5 0 729 829 139441012 139440912 2.530000e-35 159.0
27 TraesCS7B01G367700 chr4B 93.204 103 7 0 726 828 511163808 511163706 4.240000e-33 152.0
28 TraesCS7B01G367700 chr3A 94.000 100 6 0 726 825 470095679 470095778 4.240000e-33 152.0
29 TraesCS7B01G367700 chr3A 94.737 38 2 0 494 531 628225528 628225565 2.640000e-05 60.2
30 TraesCS7B01G367700 chr2D 91.818 110 8 1 716 825 120106064 120105956 4.240000e-33 152.0
31 TraesCS7B01G367700 chr1D 94.000 100 6 0 726 825 226457719 226457620 4.240000e-33 152.0
32 TraesCS7B01G367700 chr1A 93.269 104 5 1 729 830 557490504 557490401 4.240000e-33 152.0
33 TraesCS7B01G367700 chr6D 92.381 105 8 0 725 829 158562514 158562618 1.530000e-32 150.0
34 TraesCS7B01G367700 chr4A 94.737 38 2 0 494 531 708565558 708565595 2.640000e-05 60.2
35 TraesCS7B01G367700 chr3B 94.737 38 2 0 494 531 2017853 2017890 2.640000e-05 60.2
36 TraesCS7B01G367700 chr3B 94.737 38 2 0 494 531 12767563 12767526 2.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G367700 chr7B 632336138 632338599 2461 True 4547.000000 4547 100.000000 1 2462 1 chr7B.!!$R3 2461
1 TraesCS7B01G367700 chr7B 630310622 630311219 597 False 713.000000 713 88.206000 925 1525 1 chr7B.!!$F1 600
2 TraesCS7B01G367700 chr7B 630552388 630552896 508 False 684.000000 684 90.963000 980 1487 1 chr7B.!!$F2 507
3 TraesCS7B01G367700 chr7A 663491223 663499147 7924 True 280.677778 965 86.045667 151 2462 9 chr7A.!!$R1 2311
4 TraesCS7B01G367700 chr7D 572757308 572757999 691 False 660.000000 660 83.944000 916 1622 1 chr7D.!!$F1 706
5 TraesCS7B01G367700 chr7D 573621064 573622255 1191 True 627.000000 832 86.089000 1157 2462 2 chr7D.!!$R3 1305
6 TraesCS7B01G367700 chr7D 573460257 573460842 585 True 551.000000 551 83.784000 1003 1589 1 chr7D.!!$R1 586
7 TraesCS7B01G367700 chr7D 580380987 580382047 1060 True 358.950000 630 89.771500 151 1466 2 chr7D.!!$R4 1315
8 TraesCS7B01G367700 chr7D 573475797 573476983 1186 True 254.500000 344 84.345000 1270 2462 2 chr7D.!!$R2 1192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.040514 TTGCCAAATCAGTCAACGCG 60.041 50.0 3.53 3.53 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 7926 0.03601 ACTGGATCCCAAGCACTTCG 60.036 55.0 9.9 0.0 30.8 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.172625 AGTGCGGTTGCCAAATCA 57.827 50.000 0.00 0.00 41.78 2.57
18 19 1.959085 AGTGCGGTTGCCAAATCAG 59.041 52.632 0.00 0.00 41.78 2.90
19 20 0.823356 AGTGCGGTTGCCAAATCAGT 60.823 50.000 0.00 0.00 41.78 3.41
20 21 0.387239 GTGCGGTTGCCAAATCAGTC 60.387 55.000 0.00 0.00 41.78 3.51
21 22 0.821301 TGCGGTTGCCAAATCAGTCA 60.821 50.000 0.00 0.00 41.78 3.41
22 23 0.313672 GCGGTTGCCAAATCAGTCAA 59.686 50.000 0.00 0.00 33.98 3.18
23 24 1.930371 GCGGTTGCCAAATCAGTCAAC 60.930 52.381 0.00 0.00 38.36 3.18
24 25 1.662876 CGGTTGCCAAATCAGTCAACG 60.663 52.381 0.00 0.00 39.56 4.10
25 26 1.408422 GTTGCCAAATCAGTCAACGC 58.592 50.000 0.00 0.00 31.07 4.84
26 27 0.040514 TTGCCAAATCAGTCAACGCG 60.041 50.000 3.53 3.53 0.00 6.01
27 28 0.882484 TGCCAAATCAGTCAACGCGA 60.882 50.000 15.93 0.00 0.00 5.87
28 29 0.447801 GCCAAATCAGTCAACGCGAT 59.552 50.000 15.93 0.00 0.00 4.58
29 30 1.135689 GCCAAATCAGTCAACGCGATT 60.136 47.619 15.93 0.00 0.00 3.34
30 31 2.095213 GCCAAATCAGTCAACGCGATTA 59.905 45.455 15.93 0.00 0.00 1.75
31 32 3.785505 GCCAAATCAGTCAACGCGATTAG 60.786 47.826 15.93 0.00 0.00 1.73
32 33 3.616821 CCAAATCAGTCAACGCGATTAGA 59.383 43.478 15.93 2.88 0.00 2.10
33 34 4.271049 CCAAATCAGTCAACGCGATTAGAT 59.729 41.667 15.93 5.39 0.00 1.98
34 35 5.193216 CAAATCAGTCAACGCGATTAGATG 58.807 41.667 15.93 4.26 0.00 2.90
35 36 3.775661 TCAGTCAACGCGATTAGATGA 57.224 42.857 15.93 6.85 0.00 2.92
36 37 3.435566 TCAGTCAACGCGATTAGATGAC 58.564 45.455 15.93 15.97 40.45 3.06
37 38 3.119637 TCAGTCAACGCGATTAGATGACA 60.120 43.478 15.93 0.13 42.12 3.58
38 39 3.241553 CAGTCAACGCGATTAGATGACAG 59.758 47.826 15.93 9.99 42.12 3.51
39 40 2.535984 GTCAACGCGATTAGATGACAGG 59.464 50.000 15.93 0.00 40.02 4.00
40 41 1.258982 CAACGCGATTAGATGACAGGC 59.741 52.381 15.93 0.00 0.00 4.85
41 42 0.747255 ACGCGATTAGATGACAGGCT 59.253 50.000 15.93 0.00 0.00 4.58
42 43 1.269309 ACGCGATTAGATGACAGGCTC 60.269 52.381 15.93 0.00 0.00 4.70
43 44 1.413382 GCGATTAGATGACAGGCTCG 58.587 55.000 0.00 0.00 0.00 5.03
44 45 1.269309 GCGATTAGATGACAGGCTCGT 60.269 52.381 0.00 0.00 0.00 4.18
45 46 2.031069 GCGATTAGATGACAGGCTCGTA 60.031 50.000 0.00 0.00 0.00 3.43
46 47 3.816091 CGATTAGATGACAGGCTCGTAG 58.184 50.000 0.00 0.00 0.00 3.51
47 48 3.498777 CGATTAGATGACAGGCTCGTAGA 59.501 47.826 0.00 0.00 0.00 2.59
48 49 4.023963 CGATTAGATGACAGGCTCGTAGAA 60.024 45.833 0.00 0.00 34.09 2.10
49 50 5.505819 CGATTAGATGACAGGCTCGTAGAAA 60.506 44.000 0.00 0.00 34.09 2.52
50 51 3.512033 AGATGACAGGCTCGTAGAAAC 57.488 47.619 0.00 0.00 34.09 2.78
51 52 2.826128 AGATGACAGGCTCGTAGAAACA 59.174 45.455 0.00 0.00 34.09 2.83
52 53 3.258372 AGATGACAGGCTCGTAGAAACAA 59.742 43.478 0.00 0.00 34.09 2.83
53 54 2.750948 TGACAGGCTCGTAGAAACAAC 58.249 47.619 0.00 0.00 34.09 3.32
54 55 2.101750 TGACAGGCTCGTAGAAACAACA 59.898 45.455 0.00 0.00 34.09 3.33
55 56 3.244078 TGACAGGCTCGTAGAAACAACAT 60.244 43.478 0.00 0.00 34.09 2.71
56 57 3.067106 ACAGGCTCGTAGAAACAACATG 58.933 45.455 0.00 0.00 34.09 3.21
57 58 2.416547 CAGGCTCGTAGAAACAACATGG 59.583 50.000 0.00 0.00 34.09 3.66
58 59 2.301870 AGGCTCGTAGAAACAACATGGA 59.698 45.455 0.00 0.00 34.09 3.41
59 60 3.071479 GGCTCGTAGAAACAACATGGAA 58.929 45.455 0.00 0.00 34.09 3.53
60 61 3.500680 GGCTCGTAGAAACAACATGGAAA 59.499 43.478 0.00 0.00 34.09 3.13
61 62 4.156008 GGCTCGTAGAAACAACATGGAAAT 59.844 41.667 0.00 0.00 34.09 2.17
62 63 5.353123 GGCTCGTAGAAACAACATGGAAATA 59.647 40.000 0.00 0.00 34.09 1.40
63 64 6.038271 GGCTCGTAGAAACAACATGGAAATAT 59.962 38.462 0.00 0.00 34.09 1.28
64 65 7.126398 GCTCGTAGAAACAACATGGAAATATC 58.874 38.462 0.00 0.00 34.09 1.63
65 66 7.201609 GCTCGTAGAAACAACATGGAAATATCA 60.202 37.037 0.00 0.00 34.09 2.15
66 67 8.196802 TCGTAGAAACAACATGGAAATATCAG 57.803 34.615 0.00 0.00 0.00 2.90
67 68 7.822334 TCGTAGAAACAACATGGAAATATCAGT 59.178 33.333 0.00 0.00 0.00 3.41
68 69 8.450964 CGTAGAAACAACATGGAAATATCAGTT 58.549 33.333 0.00 0.00 0.00 3.16
69 70 9.559958 GTAGAAACAACATGGAAATATCAGTTG 57.440 33.333 0.00 0.00 38.85 3.16
70 71 8.408043 AGAAACAACATGGAAATATCAGTTGA 57.592 30.769 9.73 0.00 37.58 3.18
71 72 9.028284 AGAAACAACATGGAAATATCAGTTGAT 57.972 29.630 9.73 0.00 37.58 2.57
72 73 9.294030 GAAACAACATGGAAATATCAGTTGATC 57.706 33.333 9.73 4.62 37.58 2.92
73 74 7.338800 ACAACATGGAAATATCAGTTGATCC 57.661 36.000 9.73 0.00 37.58 3.36
74 75 6.038603 ACAACATGGAAATATCAGTTGATCCG 59.961 38.462 9.73 0.00 37.58 4.18
75 76 5.684704 ACATGGAAATATCAGTTGATCCGT 58.315 37.500 0.00 0.00 36.05 4.69
76 77 5.528690 ACATGGAAATATCAGTTGATCCGTG 59.471 40.000 15.31 15.31 37.56 4.94
77 78 5.097742 TGGAAATATCAGTTGATCCGTGT 57.902 39.130 0.00 0.00 36.05 4.49
78 79 4.875536 TGGAAATATCAGTTGATCCGTGTG 59.124 41.667 0.00 0.00 36.05 3.82
79 80 4.273480 GGAAATATCAGTTGATCCGTGTGG 59.727 45.833 0.00 0.00 36.05 4.17
88 89 4.005902 TCCGTGTGGATCGCTGTA 57.994 55.556 0.00 0.00 40.17 2.74
89 90 1.509463 TCCGTGTGGATCGCTGTAC 59.491 57.895 0.00 0.00 40.17 2.90
90 91 1.518572 CCGTGTGGATCGCTGTACC 60.519 63.158 0.00 0.00 37.49 3.34
91 92 1.518572 CGTGTGGATCGCTGTACCC 60.519 63.158 0.00 0.00 0.00 3.69
92 93 1.594833 GTGTGGATCGCTGTACCCA 59.405 57.895 0.00 0.00 0.00 4.51
93 94 0.178068 GTGTGGATCGCTGTACCCAT 59.822 55.000 0.00 0.00 0.00 4.00
94 95 0.177836 TGTGGATCGCTGTACCCATG 59.822 55.000 0.00 0.00 0.00 3.66
95 96 0.178068 GTGGATCGCTGTACCCATGT 59.822 55.000 0.00 0.00 0.00 3.21
96 97 0.908910 TGGATCGCTGTACCCATGTT 59.091 50.000 0.00 0.00 0.00 2.71
97 98 1.134521 TGGATCGCTGTACCCATGTTC 60.135 52.381 0.00 0.00 0.00 3.18
98 99 1.134521 GGATCGCTGTACCCATGTTCA 60.135 52.381 0.00 0.00 0.00 3.18
99 100 2.485479 GGATCGCTGTACCCATGTTCAT 60.485 50.000 0.00 0.00 0.00 2.57
100 101 2.022764 TCGCTGTACCCATGTTCATG 57.977 50.000 5.88 5.88 0.00 3.07
101 102 1.552792 TCGCTGTACCCATGTTCATGA 59.447 47.619 13.51 0.00 0.00 3.07
102 103 2.170397 TCGCTGTACCCATGTTCATGAT 59.830 45.455 13.51 4.95 0.00 2.45
103 104 2.945008 CGCTGTACCCATGTTCATGATT 59.055 45.455 13.51 3.55 0.00 2.57
104 105 3.378112 CGCTGTACCCATGTTCATGATTT 59.622 43.478 13.51 1.41 0.00 2.17
105 106 4.142403 CGCTGTACCCATGTTCATGATTTT 60.142 41.667 13.51 0.00 0.00 1.82
106 107 5.104374 GCTGTACCCATGTTCATGATTTTG 58.896 41.667 13.51 0.00 0.00 2.44
107 108 5.336690 GCTGTACCCATGTTCATGATTTTGT 60.337 40.000 13.51 5.98 0.00 2.83
108 109 6.662865 TGTACCCATGTTCATGATTTTGTT 57.337 33.333 13.51 0.00 0.00 2.83
109 110 7.060383 TGTACCCATGTTCATGATTTTGTTT 57.940 32.000 13.51 0.00 0.00 2.83
110 111 8.183104 TGTACCCATGTTCATGATTTTGTTTA 57.817 30.769 13.51 0.00 0.00 2.01
111 112 8.085296 TGTACCCATGTTCATGATTTTGTTTAC 58.915 33.333 13.51 0.00 0.00 2.01
112 113 7.060383 ACCCATGTTCATGATTTTGTTTACA 57.940 32.000 13.51 0.00 0.00 2.41
113 114 7.678837 ACCCATGTTCATGATTTTGTTTACAT 58.321 30.769 13.51 0.00 0.00 2.29
114 115 7.603404 ACCCATGTTCATGATTTTGTTTACATG 59.397 33.333 19.22 19.22 40.58 3.21
115 116 7.413219 CCCATGTTCATGATTTTGTTTACATGC 60.413 37.037 20.16 0.00 39.93 4.06
116 117 7.332430 CCATGTTCATGATTTTGTTTACATGCT 59.668 33.333 20.16 0.00 39.93 3.79
117 118 7.640616 TGTTCATGATTTTGTTTACATGCTG 57.359 32.000 0.00 0.00 39.60 4.41
118 119 6.645827 TGTTCATGATTTTGTTTACATGCTGG 59.354 34.615 0.00 0.00 39.60 4.85
119 120 6.343716 TCATGATTTTGTTTACATGCTGGT 57.656 33.333 0.00 0.00 39.60 4.00
120 121 7.459795 TCATGATTTTGTTTACATGCTGGTA 57.540 32.000 0.00 0.00 39.60 3.25
121 122 7.537715 TCATGATTTTGTTTACATGCTGGTAG 58.462 34.615 0.00 0.00 39.60 3.18
122 123 7.392953 TCATGATTTTGTTTACATGCTGGTAGA 59.607 33.333 0.00 0.00 39.60 2.59
123 124 7.701539 TGATTTTGTTTACATGCTGGTAGAT 57.298 32.000 0.00 0.00 0.00 1.98
124 125 8.121305 TGATTTTGTTTACATGCTGGTAGATT 57.879 30.769 0.00 0.00 0.00 2.40
125 126 9.237187 TGATTTTGTTTACATGCTGGTAGATTA 57.763 29.630 0.00 0.00 0.00 1.75
128 129 9.906660 TTTTGTTTACATGCTGGTAGATTAAAG 57.093 29.630 0.00 0.00 0.00 1.85
129 130 8.856153 TTGTTTACATGCTGGTAGATTAAAGA 57.144 30.769 0.00 0.00 0.00 2.52
130 131 8.856153 TGTTTACATGCTGGTAGATTAAAGAA 57.144 30.769 0.00 0.00 0.00 2.52
131 132 9.290988 TGTTTACATGCTGGTAGATTAAAGAAA 57.709 29.630 0.00 0.00 0.00 2.52
249 289 9.586435 AGAATCTTGTTTTGGTTTTAAGTTGAG 57.414 29.630 0.00 0.00 0.00 3.02
260 300 8.833231 TGGTTTTAAGTTGAGTCTCATTAGAG 57.167 34.615 2.68 0.00 43.48 2.43
262 302 8.713271 GGTTTTAAGTTGAGTCTCATTAGAGTG 58.287 37.037 2.68 0.00 42.66 3.51
272 312 6.815089 AGTCTCATTAGAGTGTTCATCCATC 58.185 40.000 0.00 0.00 42.66 3.51
276 316 7.713942 TCTCATTAGAGTGTTCATCCATCATTG 59.286 37.037 0.00 0.00 42.66 2.82
291 331 5.927281 CATCATTGGAGGGAATCTTGTTT 57.073 39.130 0.00 0.00 0.00 2.83
292 332 6.290294 CATCATTGGAGGGAATCTTGTTTT 57.710 37.500 0.00 0.00 0.00 2.43
293 333 5.726980 TCATTGGAGGGAATCTTGTTTTG 57.273 39.130 0.00 0.00 0.00 2.44
299 339 5.056480 GGAGGGAATCTTGTTTTGGTTTTG 58.944 41.667 0.00 0.00 0.00 2.44
354 394 6.127054 ACTGCATCTCTATGTTAGCCTTACAA 60.127 38.462 0.00 0.00 35.38 2.41
373 413 9.416794 CCTTACAATAGATATGCTGTAGTCAAG 57.583 37.037 0.00 0.00 0.00 3.02
448 503 2.102588 CCGATCCCCTTCGATGTACTTT 59.897 50.000 0.00 0.00 41.62 2.66
526 589 9.809096 TGTAAGATTTAGATCATCTCACTTCAC 57.191 33.333 0.00 0.00 34.60 3.18
529 592 8.076910 AGATTTAGATCATCTCACTTCACTGT 57.923 34.615 0.00 0.00 34.60 3.55
535 598 6.817641 AGATCATCTCACTTCACTGTTTCATC 59.182 38.462 0.00 0.00 0.00 2.92
569 640 9.904198 TGATCTCTTCATATACTCCTCTATCAG 57.096 37.037 0.00 0.00 0.00 2.90
574 645 7.671819 TCTTCATATACTCCTCTATCAGGTTGG 59.328 40.741 0.00 0.00 43.95 3.77
588 664 2.165030 CAGGTTGGCTTATCTGCTTTGG 59.835 50.000 0.00 0.00 0.00 3.28
620 697 5.855045 GCTATAAGAGCCTGCTTAACCTAA 58.145 41.667 0.00 0.00 46.41 2.69
631 708 6.321435 GCCTGCTTAACCTAAACTGGAATTAT 59.679 38.462 0.00 0.00 0.00 1.28
634 711 8.644374 TGCTTAACCTAAACTGGAATTATGTT 57.356 30.769 0.00 0.00 0.00 2.71
639 716 7.625828 ACCTAAACTGGAATTATGTTAGTGC 57.374 36.000 0.00 0.00 0.00 4.40
640 717 7.402862 ACCTAAACTGGAATTATGTTAGTGCT 58.597 34.615 0.00 0.00 0.00 4.40
641 718 7.888546 ACCTAAACTGGAATTATGTTAGTGCTT 59.111 33.333 0.00 0.00 0.00 3.91
668 745 9.669887 AATATATATGTATAAAACGGGGCGAAA 57.330 29.630 0.00 0.00 0.00 3.46
669 746 5.934935 ATATGTATAAAACGGGGCGAAAG 57.065 39.130 0.00 0.00 0.00 2.62
686 763 5.149054 CGAAAGCCTATCTTAGCAAACTG 57.851 43.478 0.00 0.00 33.88 3.16
688 765 4.844349 AAGCCTATCTTAGCAAACTGGA 57.156 40.909 0.00 0.00 32.10 3.86
689 766 4.844349 AGCCTATCTTAGCAAACTGGAA 57.156 40.909 0.00 0.00 0.00 3.53
690 767 5.379706 AGCCTATCTTAGCAAACTGGAAT 57.620 39.130 0.00 0.00 0.00 3.01
691 768 5.760131 AGCCTATCTTAGCAAACTGGAATT 58.240 37.500 0.00 0.00 0.00 2.17
693 770 6.995091 AGCCTATCTTAGCAAACTGGAATTAG 59.005 38.462 0.00 0.00 0.00 1.73
695 772 7.283329 CCTATCTTAGCAAACTGGAATTAGGT 58.717 38.462 0.00 0.00 0.00 3.08
696 773 7.442666 CCTATCTTAGCAAACTGGAATTAGGTC 59.557 40.741 0.00 0.00 0.00 3.85
697 774 6.121776 TCTTAGCAAACTGGAATTAGGTCA 57.878 37.500 0.00 0.00 0.00 4.02
698 775 6.721318 TCTTAGCAAACTGGAATTAGGTCAT 58.279 36.000 0.00 0.00 0.00 3.06
699 776 7.857456 TCTTAGCAAACTGGAATTAGGTCATA 58.143 34.615 0.00 0.00 0.00 2.15
700 777 8.494433 TCTTAGCAAACTGGAATTAGGTCATAT 58.506 33.333 0.00 0.00 0.00 1.78
701 778 9.125026 CTTAGCAAACTGGAATTAGGTCATATT 57.875 33.333 0.00 0.00 0.00 1.28
704 781 9.646522 AGCAAACTGGAATTAGGTCATATTATT 57.353 29.630 0.00 0.00 0.00 1.40
705 782 9.683069 GCAAACTGGAATTAGGTCATATTATTG 57.317 33.333 0.00 0.00 0.00 1.90
706 783 9.683069 CAAACTGGAATTAGGTCATATTATTGC 57.317 33.333 0.00 0.00 0.00 3.56
707 784 8.409358 AACTGGAATTAGGTCATATTATTGCC 57.591 34.615 0.00 0.00 0.00 4.52
708 785 6.948309 ACTGGAATTAGGTCATATTATTGCCC 59.052 38.462 0.00 0.00 0.00 5.36
709 786 6.252995 TGGAATTAGGTCATATTATTGCCCC 58.747 40.000 0.00 0.00 0.00 5.80
710 787 5.357032 GGAATTAGGTCATATTATTGCCCCG 59.643 44.000 0.00 0.00 0.00 5.73
711 788 2.200373 AGGTCATATTATTGCCCCGC 57.800 50.000 0.00 0.00 0.00 6.13
712 789 1.705186 AGGTCATATTATTGCCCCGCT 59.295 47.619 0.00 0.00 0.00 5.52
725 802 1.247567 CCCCGCTGTTTGTCAGATTT 58.752 50.000 0.00 0.00 46.27 2.17
732 809 5.062308 CCGCTGTTTGTCAGATTTACTACTC 59.938 44.000 0.00 0.00 46.27 2.59
741 818 6.098409 TGTCAGATTTACTACTCCCTCCAATC 59.902 42.308 0.00 0.00 0.00 2.67
754 831 6.183361 ACTCCCTCCAATCCATAATAAGTGTC 60.183 42.308 0.00 0.00 0.00 3.67
758 835 5.056480 TCCAATCCATAATAAGTGTCGCAG 58.944 41.667 0.00 0.00 0.00 5.18
759 836 4.319766 CCAATCCATAATAAGTGTCGCAGC 60.320 45.833 0.00 0.00 0.00 5.25
760 837 3.819564 TCCATAATAAGTGTCGCAGCT 57.180 42.857 0.00 0.00 0.00 4.24
761 838 4.137116 TCCATAATAAGTGTCGCAGCTT 57.863 40.909 0.00 0.00 0.00 3.74
762 839 4.513442 TCCATAATAAGTGTCGCAGCTTT 58.487 39.130 0.00 0.00 0.00 3.51
763 840 4.332543 TCCATAATAAGTGTCGCAGCTTTG 59.667 41.667 0.00 0.00 0.00 2.77
764 841 4.332543 CCATAATAAGTGTCGCAGCTTTGA 59.667 41.667 0.00 0.00 0.00 2.69
765 842 5.163764 CCATAATAAGTGTCGCAGCTTTGAA 60.164 40.000 0.00 0.00 0.00 2.69
766 843 3.813529 ATAAGTGTCGCAGCTTTGAAC 57.186 42.857 0.00 0.00 0.00 3.18
767 844 1.668419 AAGTGTCGCAGCTTTGAACT 58.332 45.000 0.00 0.00 0.00 3.01
768 845 2.526304 AGTGTCGCAGCTTTGAACTA 57.474 45.000 0.00 0.00 0.00 2.24
769 846 2.833794 AGTGTCGCAGCTTTGAACTAA 58.166 42.857 0.00 0.00 0.00 2.24
770 847 2.802816 AGTGTCGCAGCTTTGAACTAAG 59.197 45.455 0.00 0.00 0.00 2.18
771 848 2.096218 GTGTCGCAGCTTTGAACTAAGG 60.096 50.000 0.00 0.00 0.00 2.69
772 849 2.143925 GTCGCAGCTTTGAACTAAGGT 58.856 47.619 0.00 0.00 36.35 3.50
773 850 2.548480 GTCGCAGCTTTGAACTAAGGTT 59.452 45.455 0.00 0.00 38.52 3.50
774 851 2.548057 TCGCAGCTTTGAACTAAGGTTG 59.452 45.455 0.00 0.00 35.58 3.77
775 852 2.548057 CGCAGCTTTGAACTAAGGTTGA 59.452 45.455 0.00 0.00 35.58 3.18
776 853 3.003275 CGCAGCTTTGAACTAAGGTTGAA 59.997 43.478 0.00 0.00 35.58 2.69
777 854 4.290969 GCAGCTTTGAACTAAGGTTGAAC 58.709 43.478 0.00 0.00 35.58 3.18
778 855 4.036852 GCAGCTTTGAACTAAGGTTGAACT 59.963 41.667 0.00 0.00 35.58 3.01
799 876 5.362263 ACTAACCTTAGTTCAAAACTGCGA 58.638 37.500 2.65 0.00 40.96 5.10
803 880 3.303791 CCTTAGTTCAAAACTGCGACACC 60.304 47.826 2.65 0.00 42.84 4.16
809 886 5.761234 AGTTCAAAACTGCGACACCTATTTA 59.239 36.000 0.00 0.00 41.01 1.40
813 890 4.755266 AACTGCGACACCTATTTAGGAT 57.245 40.909 10.61 0.00 46.63 3.24
856 933 6.908870 TCAGAAATTTAGATGATCACGGTG 57.091 37.500 0.00 0.56 0.00 4.94
882 959 7.009540 GTGTGTTTCTTTCTTTTGTTGATCTGG 59.990 37.037 0.00 0.00 0.00 3.86
885 962 5.673337 TCTTTCTTTTGTTGATCTGGTCG 57.327 39.130 0.00 0.00 0.00 4.79
887 964 4.811555 TTCTTTTGTTGATCTGGTCGTG 57.188 40.909 0.00 0.00 0.00 4.35
897 974 1.227527 CTGGTCGTGTGTGCCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
902 982 2.611971 GGTCGTGTGTGCCTTCATCTTA 60.612 50.000 0.00 0.00 0.00 2.10
909 989 5.412594 GTGTGTGCCTTCATCTTATCTGAAA 59.587 40.000 0.00 0.00 32.53 2.69
913 993 8.677300 GTGTGCCTTCATCTTATCTGAAATTTA 58.323 33.333 0.00 0.00 32.53 1.40
940 1022 6.537301 TGTCTCGTCACTTTGTTTATCTTGTT 59.463 34.615 0.00 0.00 0.00 2.83
941 1023 7.064064 GTCTCGTCACTTTGTTTATCTTGTTC 58.936 38.462 0.00 0.00 0.00 3.18
1014 1096 2.430465 ACGCAGATGCAGATCTTTGTT 58.570 42.857 5.55 0.00 36.75 2.83
1502 7300 6.348540 GGAAGTTTGATTCGCAAGTCTGTTAT 60.349 38.462 0.00 0.00 37.87 1.89
1690 7571 6.146216 TGTTATAACACATTTTTGCTCACCG 58.854 36.000 14.35 0.00 33.17 4.94
1698 7579 3.791973 TTTTTGCTCACCGTGAATGTT 57.208 38.095 2.19 0.00 0.00 2.71
1766 7648 3.211045 GGTTGTTTGCTGGTCTTAGTCA 58.789 45.455 0.00 0.00 0.00 3.41
1767 7649 3.630312 GGTTGTTTGCTGGTCTTAGTCAA 59.370 43.478 0.00 0.00 0.00 3.18
1770 7652 5.243426 TGTTTGCTGGTCTTAGTCAAAAC 57.757 39.130 0.00 0.00 30.98 2.43
1771 7653 4.702612 TGTTTGCTGGTCTTAGTCAAAACA 59.297 37.500 0.00 0.00 30.98 2.83
1809 7693 8.225603 ACACTTGTGATTTCTTGTACTTTCAT 57.774 30.769 7.83 0.00 0.00 2.57
1812 7696 9.003658 ACTTGTGATTTCTTGTACTTTCATAGG 57.996 33.333 0.00 0.00 0.00 2.57
1826 7722 5.416952 ACTTTCATAGGTGCAGATTTTCCTG 59.583 40.000 1.67 0.00 37.23 3.86
1833 7729 3.119352 GGTGCAGATTTTCCTGTTCCATC 60.119 47.826 0.00 0.00 36.57 3.51
1835 7731 4.022068 GTGCAGATTTTCCTGTTCCATCAA 60.022 41.667 0.00 0.00 36.57 2.57
1840 7736 6.018469 AGATTTTCCTGTTCCATCAATTCCA 58.982 36.000 0.00 0.00 0.00 3.53
1843 7739 2.309755 TCCTGTTCCATCAATTCCAGCT 59.690 45.455 0.00 0.00 0.00 4.24
1845 7741 4.166725 TCCTGTTCCATCAATTCCAGCTAT 59.833 41.667 0.00 0.00 0.00 2.97
1846 7742 4.277672 CCTGTTCCATCAATTCCAGCTATG 59.722 45.833 0.00 0.00 0.00 2.23
1847 7743 4.858850 TGTTCCATCAATTCCAGCTATGT 58.141 39.130 0.00 0.00 0.00 2.29
1848 7744 4.883585 TGTTCCATCAATTCCAGCTATGTC 59.116 41.667 0.00 0.00 0.00 3.06
1849 7745 4.776435 TCCATCAATTCCAGCTATGTCA 57.224 40.909 0.00 0.00 0.00 3.58
1850 7746 5.114764 TCCATCAATTCCAGCTATGTCAA 57.885 39.130 0.00 0.00 0.00 3.18
1851 7747 5.508567 TCCATCAATTCCAGCTATGTCAAA 58.491 37.500 0.00 0.00 0.00 2.69
1852 7748 5.951148 TCCATCAATTCCAGCTATGTCAAAA 59.049 36.000 0.00 0.00 0.00 2.44
1853 7749 6.608405 TCCATCAATTCCAGCTATGTCAAAAT 59.392 34.615 0.00 0.00 0.00 1.82
1854 7750 6.921857 CCATCAATTCCAGCTATGTCAAAATC 59.078 38.462 0.00 0.00 0.00 2.17
1855 7751 7.201884 CCATCAATTCCAGCTATGTCAAAATCT 60.202 37.037 0.00 0.00 0.00 2.40
1856 7752 7.092137 TCAATTCCAGCTATGTCAAAATCTG 57.908 36.000 0.00 0.00 0.00 2.90
1857 7753 6.660521 TCAATTCCAGCTATGTCAAAATCTGT 59.339 34.615 0.00 0.00 0.00 3.41
1858 7754 6.690194 ATTCCAGCTATGTCAAAATCTGTC 57.310 37.500 0.00 0.00 0.00 3.51
1859 7755 5.164620 TCCAGCTATGTCAAAATCTGTCA 57.835 39.130 0.00 0.00 0.00 3.58
1860 7756 5.748402 TCCAGCTATGTCAAAATCTGTCAT 58.252 37.500 0.00 0.00 37.52 3.06
1861 7757 6.182627 TCCAGCTATGTCAAAATCTGTCATT 58.817 36.000 0.00 0.00 35.69 2.57
1862 7758 6.317140 TCCAGCTATGTCAAAATCTGTCATTC 59.683 38.462 0.00 0.00 35.69 2.67
1863 7759 6.318144 CCAGCTATGTCAAAATCTGTCATTCT 59.682 38.462 0.00 0.00 35.69 2.40
1864 7760 7.187480 CAGCTATGTCAAAATCTGTCATTCTG 58.813 38.462 0.00 0.00 35.69 3.02
1867 7763 7.148356 GCTATGTCAAAATCTGTCATTCTGTGA 60.148 37.037 0.00 0.00 35.69 3.58
1869 7765 6.905578 TGTCAAAATCTGTCATTCTGTGATG 58.094 36.000 0.00 0.00 39.48 3.07
1881 7777 5.578336 TCATTCTGTGATGTCGAAATCTGTC 59.422 40.000 16.47 7.82 0.00 3.51
1901 7797 8.091952 TCTGTCTAGATAACAGACTCTTCCTA 57.908 38.462 8.33 0.00 46.15 2.94
1971 7882 6.691388 CACTTTTGCTGTCTAACTAACCAAAC 59.309 38.462 0.00 0.00 0.00 2.93
1991 7902 2.120232 CTGATCACATCGAAGGCGTAC 58.880 52.381 0.00 0.00 38.98 3.67
1992 7903 1.749063 TGATCACATCGAAGGCGTACT 59.251 47.619 0.00 0.00 38.98 2.73
1999 7910 1.153823 CGAAGGCGTACTCACCAGG 60.154 63.158 0.00 0.00 0.00 4.45
2013 7924 4.347000 ACTCACCAGGTGTTTGTATACACT 59.653 41.667 19.65 0.00 45.98 3.55
2015 7926 3.188460 CACCAGGTGTTTGTATACACTGC 59.812 47.826 11.99 0.00 45.98 4.40
2051 7974 2.289444 CCAGTGTTCCACGGTAGTCAAT 60.289 50.000 0.00 0.00 39.64 2.57
2059 7982 1.743958 CACGGTAGTCAATCCTCTCGT 59.256 52.381 0.00 0.00 0.00 4.18
2061 7984 3.376234 CACGGTAGTCAATCCTCTCGTTA 59.624 47.826 0.00 0.00 0.00 3.18
2062 7985 4.036498 CACGGTAGTCAATCCTCTCGTTAT 59.964 45.833 0.00 0.00 0.00 1.89
2063 7986 5.237996 CACGGTAGTCAATCCTCTCGTTATA 59.762 44.000 0.00 0.00 0.00 0.98
2064 7987 5.238214 ACGGTAGTCAATCCTCTCGTTATAC 59.762 44.000 0.00 0.00 0.00 1.47
2065 7988 5.469421 CGGTAGTCAATCCTCTCGTTATACT 59.531 44.000 0.00 0.00 0.00 2.12
2066 7989 6.566187 CGGTAGTCAATCCTCTCGTTATACTG 60.566 46.154 0.00 0.00 0.00 2.74
2067 7990 5.776173 AGTCAATCCTCTCGTTATACTGG 57.224 43.478 0.00 0.00 0.00 4.00
2068 7991 5.202004 AGTCAATCCTCTCGTTATACTGGT 58.798 41.667 0.00 0.00 0.00 4.00
2069 7992 5.299782 AGTCAATCCTCTCGTTATACTGGTC 59.700 44.000 0.00 0.00 0.00 4.02
2139 8078 9.829507 TTTTTGTTCACCATGATTGTTTTATCT 57.170 25.926 0.00 0.00 0.00 1.98
2149 8110 8.689061 CCATGATTGTTTTATCTCCTTCAATGA 58.311 33.333 0.00 0.00 0.00 2.57
2182 8143 7.657354 TGCAGCAGTTTATAACCATGAGTATAG 59.343 37.037 0.00 0.00 0.00 1.31
2204 8165 6.588719 AGAACACATTAAAAGCTATGGCAA 57.411 33.333 3.10 0.00 41.70 4.52
2245 8206 6.369615 GCAATGCAATTATTCAAAGTTCCAGT 59.630 34.615 0.00 0.00 32.46 4.00
2251 8212 7.651808 CAATTATTCAAAGTTCCAGTGTCACT 58.348 34.615 0.00 0.00 0.00 3.41
2287 8291 5.010922 TGGTCAAGAAGCAGCAAAACATTAT 59.989 36.000 0.00 0.00 0.00 1.28
2288 8292 5.346822 GGTCAAGAAGCAGCAAAACATTATG 59.653 40.000 0.00 0.00 0.00 1.90
2289 8293 5.346822 GTCAAGAAGCAGCAAAACATTATGG 59.653 40.000 0.00 0.00 0.00 2.74
2290 8294 5.010922 TCAAGAAGCAGCAAAACATTATGGT 59.989 36.000 0.00 0.00 0.00 3.55
2291 8295 5.064441 AGAAGCAGCAAAACATTATGGTC 57.936 39.130 0.00 0.00 0.00 4.02
2292 8296 4.523943 AGAAGCAGCAAAACATTATGGTCA 59.476 37.500 0.00 0.00 0.00 4.02
2293 8297 4.870123 AGCAGCAAAACATTATGGTCAA 57.130 36.364 0.00 0.00 0.00 3.18
2295 8299 4.523943 AGCAGCAAAACATTATGGTCAAGA 59.476 37.500 0.00 0.00 0.00 3.02
2297 8301 5.346822 GCAGCAAAACATTATGGTCAAGAAG 59.653 40.000 0.00 0.00 0.00 2.85
2299 8303 5.010922 AGCAAAACATTATGGTCAAGAAGCA 59.989 36.000 0.00 0.00 40.26 3.91
2300 8304 5.346822 GCAAAACATTATGGTCAAGAAGCAG 59.653 40.000 0.00 0.00 39.11 4.24
2301 8305 4.708726 AACATTATGGTCAAGAAGCAGC 57.291 40.909 0.00 0.00 39.11 5.25
2302 8306 3.689347 ACATTATGGTCAAGAAGCAGCA 58.311 40.909 0.00 0.00 39.11 4.41
2303 8307 4.081406 ACATTATGGTCAAGAAGCAGCAA 58.919 39.130 0.00 0.00 39.11 3.91
2304 8308 4.523943 ACATTATGGTCAAGAAGCAGCAAA 59.476 37.500 0.00 0.00 39.11 3.68
2305 8309 5.010922 ACATTATGGTCAAGAAGCAGCAAAA 59.989 36.000 0.00 0.00 39.11 2.44
2306 8310 2.869233 TGGTCAAGAAGCAGCAAAAC 57.131 45.000 0.00 0.00 0.00 2.43
2307 8311 2.098614 TGGTCAAGAAGCAGCAAAACA 58.901 42.857 0.00 0.00 0.00 2.83
2308 8312 2.694628 TGGTCAAGAAGCAGCAAAACAT 59.305 40.909 0.00 0.00 0.00 2.71
2309 8313 3.132646 TGGTCAAGAAGCAGCAAAACATT 59.867 39.130 0.00 0.00 0.00 2.71
2310 8314 4.340666 TGGTCAAGAAGCAGCAAAACATTA 59.659 37.500 0.00 0.00 0.00 1.90
2311 8315 5.010922 TGGTCAAGAAGCAGCAAAACATTAT 59.989 36.000 0.00 0.00 0.00 1.28
2312 8316 6.208402 TGGTCAAGAAGCAGCAAAACATTATA 59.792 34.615 0.00 0.00 0.00 0.98
2313 8317 7.093814 TGGTCAAGAAGCAGCAAAACATTATAT 60.094 33.333 0.00 0.00 0.00 0.86
2314 8318 7.221452 GGTCAAGAAGCAGCAAAACATTATATG 59.779 37.037 0.00 0.00 0.00 1.78
2315 8319 6.753279 TCAAGAAGCAGCAAAACATTATATGC 59.247 34.615 0.00 0.00 39.06 3.14
2321 8325 5.341872 AGCAAAACATTATATGCTGGCAA 57.658 34.783 0.00 0.00 46.66 4.52
2322 8326 5.111293 AGCAAAACATTATATGCTGGCAAC 58.889 37.500 0.00 0.00 46.66 4.17
2323 8327 5.337410 AGCAAAACATTATATGCTGGCAACA 60.337 36.000 0.00 0.00 46.66 3.33
2345 8349 7.227049 ACAAAAACACAATACTGATTAGGGG 57.773 36.000 0.00 0.00 0.00 4.79
2349 8353 7.462571 AAACACAATACTGATTAGGGGAAAC 57.537 36.000 0.00 0.00 0.00 2.78
2350 8354 6.134535 ACACAATACTGATTAGGGGAAACA 57.865 37.500 0.00 0.00 0.00 2.83
2367 8372 5.088739 GGAAACATTGACAGCTTGATAACG 58.911 41.667 0.00 0.00 0.00 3.18
2376 8381 5.531287 TGACAGCTTGATAACGATAGCTAGA 59.469 40.000 0.00 0.00 41.76 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.823356 ACTGATTTGGCAACCGCACT 60.823 50.000 0.00 0.00 41.24 4.40
1 2 0.387239 GACTGATTTGGCAACCGCAC 60.387 55.000 0.00 0.00 41.24 5.34
2 3 0.821301 TGACTGATTTGGCAACCGCA 60.821 50.000 0.00 0.00 41.24 5.69
3 4 0.313672 TTGACTGATTTGGCAACCGC 59.686 50.000 0.00 0.00 37.44 5.68
4 5 1.662876 CGTTGACTGATTTGGCAACCG 60.663 52.381 0.00 0.52 37.83 4.44
5 6 1.930371 GCGTTGACTGATTTGGCAACC 60.930 52.381 0.00 0.00 37.83 3.77
6 7 1.408422 GCGTTGACTGATTTGGCAAC 58.592 50.000 0.00 3.38 37.76 4.17
7 8 0.040514 CGCGTTGACTGATTTGGCAA 60.041 50.000 0.00 0.00 0.00 4.52
8 9 0.882484 TCGCGTTGACTGATTTGGCA 60.882 50.000 5.77 0.00 0.00 4.92
9 10 0.447801 ATCGCGTTGACTGATTTGGC 59.552 50.000 5.77 0.00 0.00 4.52
10 11 2.900122 AATCGCGTTGACTGATTTGG 57.100 45.000 5.77 0.00 0.00 3.28
11 12 4.840401 TCTAATCGCGTTGACTGATTTG 57.160 40.909 5.77 0.00 34.40 2.32
12 13 5.005779 GTCATCTAATCGCGTTGACTGATTT 59.994 40.000 5.77 0.00 35.09 2.17
13 14 4.504461 GTCATCTAATCGCGTTGACTGATT 59.496 41.667 5.77 0.00 35.09 2.57
14 15 4.045104 GTCATCTAATCGCGTTGACTGAT 58.955 43.478 5.77 1.23 35.09 2.90
15 16 3.119637 TGTCATCTAATCGCGTTGACTGA 60.120 43.478 5.77 0.85 38.00 3.41
16 17 3.179048 TGTCATCTAATCGCGTTGACTG 58.821 45.455 5.77 0.00 38.00 3.51
17 18 3.439293 CTGTCATCTAATCGCGTTGACT 58.561 45.455 5.77 0.00 38.00 3.41
18 19 2.535984 CCTGTCATCTAATCGCGTTGAC 59.464 50.000 5.77 11.24 37.73 3.18
19 20 2.809446 CCTGTCATCTAATCGCGTTGA 58.191 47.619 5.77 0.50 0.00 3.18
20 21 1.258982 GCCTGTCATCTAATCGCGTTG 59.741 52.381 5.77 0.00 0.00 4.10
21 22 1.137086 AGCCTGTCATCTAATCGCGTT 59.863 47.619 5.77 2.26 0.00 4.84
22 23 0.747255 AGCCTGTCATCTAATCGCGT 59.253 50.000 5.77 0.00 0.00 6.01
23 24 1.413382 GAGCCTGTCATCTAATCGCG 58.587 55.000 0.00 0.00 0.00 5.87
24 25 1.269309 ACGAGCCTGTCATCTAATCGC 60.269 52.381 0.00 0.00 32.22 4.58
25 26 2.783828 ACGAGCCTGTCATCTAATCG 57.216 50.000 0.00 0.00 35.00 3.34
26 27 5.440234 TTCTACGAGCCTGTCATCTAATC 57.560 43.478 0.00 0.00 0.00 1.75
27 28 5.127194 TGTTTCTACGAGCCTGTCATCTAAT 59.873 40.000 0.00 0.00 0.00 1.73
28 29 4.461431 TGTTTCTACGAGCCTGTCATCTAA 59.539 41.667 0.00 0.00 0.00 2.10
29 30 4.014406 TGTTTCTACGAGCCTGTCATCTA 58.986 43.478 0.00 0.00 0.00 1.98
30 31 2.826128 TGTTTCTACGAGCCTGTCATCT 59.174 45.455 0.00 0.00 0.00 2.90
31 32 3.232213 TGTTTCTACGAGCCTGTCATC 57.768 47.619 0.00 0.00 0.00 2.92
32 33 3.244078 TGTTGTTTCTACGAGCCTGTCAT 60.244 43.478 0.00 0.00 0.00 3.06
33 34 2.101750 TGTTGTTTCTACGAGCCTGTCA 59.898 45.455 0.00 0.00 0.00 3.58
34 35 2.750948 TGTTGTTTCTACGAGCCTGTC 58.249 47.619 0.00 0.00 0.00 3.51
35 36 2.902705 TGTTGTTTCTACGAGCCTGT 57.097 45.000 0.00 0.00 0.00 4.00
36 37 2.416547 CCATGTTGTTTCTACGAGCCTG 59.583 50.000 0.00 0.00 0.00 4.85
37 38 2.301870 TCCATGTTGTTTCTACGAGCCT 59.698 45.455 0.00 0.00 0.00 4.58
38 39 2.695359 TCCATGTTGTTTCTACGAGCC 58.305 47.619 0.00 0.00 0.00 4.70
39 40 4.742438 TTTCCATGTTGTTTCTACGAGC 57.258 40.909 0.00 0.00 0.00 5.03
40 41 8.196802 TGATATTTCCATGTTGTTTCTACGAG 57.803 34.615 0.00 0.00 0.00 4.18
41 42 7.822334 ACTGATATTTCCATGTTGTTTCTACGA 59.178 33.333 0.00 0.00 0.00 3.43
42 43 7.974675 ACTGATATTTCCATGTTGTTTCTACG 58.025 34.615 0.00 0.00 0.00 3.51
43 44 9.559958 CAACTGATATTTCCATGTTGTTTCTAC 57.440 33.333 0.00 0.00 32.70 2.59
44 45 9.513906 TCAACTGATATTTCCATGTTGTTTCTA 57.486 29.630 0.00 0.00 36.93 2.10
45 46 8.408043 TCAACTGATATTTCCATGTTGTTTCT 57.592 30.769 0.00 0.00 36.93 2.52
46 47 9.294030 GATCAACTGATATTTCCATGTTGTTTC 57.706 33.333 0.00 0.00 36.93 2.78
47 48 8.253113 GGATCAACTGATATTTCCATGTTGTTT 58.747 33.333 0.00 0.00 36.93 2.83
48 49 7.415541 CGGATCAACTGATATTTCCATGTTGTT 60.416 37.037 0.00 0.00 36.93 2.83
49 50 6.038603 CGGATCAACTGATATTTCCATGTTGT 59.961 38.462 0.00 0.00 36.93 3.32
50 51 6.038603 ACGGATCAACTGATATTTCCATGTTG 59.961 38.462 0.00 0.00 34.37 3.33
51 52 6.038603 CACGGATCAACTGATATTTCCATGTT 59.961 38.462 0.00 0.00 34.37 2.71
52 53 5.528690 CACGGATCAACTGATATTTCCATGT 59.471 40.000 0.00 0.00 34.37 3.21
53 54 5.528690 ACACGGATCAACTGATATTTCCATG 59.471 40.000 0.00 0.00 34.37 3.66
54 55 5.528690 CACACGGATCAACTGATATTTCCAT 59.471 40.000 0.00 0.00 34.37 3.41
55 56 4.875536 CACACGGATCAACTGATATTTCCA 59.124 41.667 0.00 0.00 34.37 3.53
56 57 4.273480 CCACACGGATCAACTGATATTTCC 59.727 45.833 0.00 0.00 34.37 3.13
57 58 5.116180 TCCACACGGATCAACTGATATTTC 58.884 41.667 0.00 0.00 35.91 2.17
58 59 5.097742 TCCACACGGATCAACTGATATTT 57.902 39.130 0.00 0.00 35.91 1.40
59 60 4.753516 TCCACACGGATCAACTGATATT 57.246 40.909 0.00 0.00 35.91 1.28
72 73 1.518572 GGTACAGCGATCCACACGG 60.519 63.158 0.00 0.00 0.00 4.94
73 74 1.518572 GGGTACAGCGATCCACACG 60.519 63.158 0.00 0.00 0.00 4.49
74 75 0.178068 ATGGGTACAGCGATCCACAC 59.822 55.000 0.00 0.00 31.48 3.82
75 76 0.177836 CATGGGTACAGCGATCCACA 59.822 55.000 0.00 0.00 31.48 4.17
76 77 0.178068 ACATGGGTACAGCGATCCAC 59.822 55.000 0.00 0.00 31.48 4.02
77 78 0.908910 AACATGGGTACAGCGATCCA 59.091 50.000 0.00 0.00 0.00 3.41
78 79 1.134521 TGAACATGGGTACAGCGATCC 60.135 52.381 0.00 0.00 0.00 3.36
79 80 2.309528 TGAACATGGGTACAGCGATC 57.690 50.000 0.00 0.00 0.00 3.69
80 81 2.170397 TCATGAACATGGGTACAGCGAT 59.830 45.455 13.67 0.00 39.24 4.58
81 82 1.552792 TCATGAACATGGGTACAGCGA 59.447 47.619 13.67 0.00 39.24 4.93
82 83 2.022764 TCATGAACATGGGTACAGCG 57.977 50.000 13.67 0.00 39.24 5.18
83 84 4.989279 AAATCATGAACATGGGTACAGC 57.011 40.909 13.67 0.00 39.24 4.40
84 85 6.271488 ACAAAATCATGAACATGGGTACAG 57.729 37.500 13.67 4.48 39.24 2.74
85 86 6.662865 AACAAAATCATGAACATGGGTACA 57.337 33.333 13.67 0.00 39.24 2.90
86 87 8.085296 TGTAAACAAAATCATGAACATGGGTAC 58.915 33.333 13.67 6.48 39.24 3.34
87 88 8.183104 TGTAAACAAAATCATGAACATGGGTA 57.817 30.769 13.67 0.00 39.24 3.69
88 89 7.060383 TGTAAACAAAATCATGAACATGGGT 57.940 32.000 13.67 2.30 39.24 4.51
89 90 7.413219 GCATGTAAACAAAATCATGAACATGGG 60.413 37.037 23.96 9.15 39.68 4.00
90 91 7.332430 AGCATGTAAACAAAATCATGAACATGG 59.668 33.333 23.96 12.62 39.68 3.66
91 92 8.166066 CAGCATGTAAACAAAATCATGAACATG 58.834 33.333 20.82 20.82 39.68 3.21
92 93 7.332430 CCAGCATGTAAACAAAATCATGAACAT 59.668 33.333 0.00 0.00 39.68 2.71
93 94 6.645827 CCAGCATGTAAACAAAATCATGAACA 59.354 34.615 0.00 0.00 39.68 3.18
94 95 6.646240 ACCAGCATGTAAACAAAATCATGAAC 59.354 34.615 0.00 0.00 39.68 3.18
95 96 6.757237 ACCAGCATGTAAACAAAATCATGAA 58.243 32.000 0.00 0.00 39.68 2.57
96 97 6.343716 ACCAGCATGTAAACAAAATCATGA 57.656 33.333 0.00 0.00 39.68 3.07
97 98 7.537715 TCTACCAGCATGTAAACAAAATCATG 58.462 34.615 0.00 0.00 40.09 3.07
98 99 7.701539 TCTACCAGCATGTAAACAAAATCAT 57.298 32.000 0.00 0.00 0.00 2.45
99 100 7.701539 ATCTACCAGCATGTAAACAAAATCA 57.298 32.000 0.00 0.00 0.00 2.57
102 103 9.906660 CTTTAATCTACCAGCATGTAAACAAAA 57.093 29.630 0.00 0.00 0.00 2.44
103 104 9.290988 TCTTTAATCTACCAGCATGTAAACAAA 57.709 29.630 0.00 0.00 0.00 2.83
104 105 8.856153 TCTTTAATCTACCAGCATGTAAACAA 57.144 30.769 0.00 0.00 0.00 2.83
105 106 8.856153 TTCTTTAATCTACCAGCATGTAAACA 57.144 30.769 0.00 0.00 0.00 2.83
132 133 3.555547 GCAATCCAGCAAAACTCGTTTTT 59.444 39.130 5.11 0.00 40.45 1.94
133 134 3.123050 GCAATCCAGCAAAACTCGTTTT 58.877 40.909 2.12 2.12 42.91 2.43
134 135 2.362077 AGCAATCCAGCAAAACTCGTTT 59.638 40.909 0.00 0.00 36.85 3.60
135 136 1.956477 AGCAATCCAGCAAAACTCGTT 59.044 42.857 0.00 0.00 36.85 3.85
136 137 1.267806 CAGCAATCCAGCAAAACTCGT 59.732 47.619 0.00 0.00 36.85 4.18
137 138 1.267806 ACAGCAATCCAGCAAAACTCG 59.732 47.619 0.00 0.00 36.85 4.18
138 139 2.352127 GGACAGCAATCCAGCAAAACTC 60.352 50.000 1.48 0.00 38.77 3.01
139 140 1.615392 GGACAGCAATCCAGCAAAACT 59.385 47.619 1.48 0.00 38.77 2.66
140 141 1.337167 GGGACAGCAATCCAGCAAAAC 60.337 52.381 8.40 0.00 40.96 2.43
141 142 0.968405 GGGACAGCAATCCAGCAAAA 59.032 50.000 8.40 0.00 40.96 2.44
142 143 1.243342 CGGGACAGCAATCCAGCAAA 61.243 55.000 8.40 0.00 40.96 3.68
143 144 1.675310 CGGGACAGCAATCCAGCAA 60.675 57.895 8.40 0.00 40.96 3.91
144 145 2.046023 CGGGACAGCAATCCAGCA 60.046 61.111 8.40 0.00 40.96 4.41
145 146 2.045926 ACGGGACAGCAATCCAGC 60.046 61.111 8.40 0.00 40.96 4.85
146 147 0.107508 ATCACGGGACAGCAATCCAG 60.108 55.000 8.40 6.71 40.96 3.86
147 148 0.392863 CATCACGGGACAGCAATCCA 60.393 55.000 8.40 0.00 40.96 3.41
148 149 1.097547 CCATCACGGGACAGCAATCC 61.098 60.000 0.00 0.00 38.13 3.01
149 150 0.392998 ACCATCACGGGACAGCAATC 60.393 55.000 0.00 0.00 40.22 2.67
226 227 8.749354 AGACTCAACTTAAAACCAAAACAAGAT 58.251 29.630 0.00 0.00 0.00 2.40
249 289 6.577103 TGATGGATGAACACTCTAATGAGAC 58.423 40.000 0.00 0.00 42.73 3.36
272 312 4.284234 ACCAAAACAAGATTCCCTCCAATG 59.716 41.667 0.00 0.00 0.00 2.82
276 316 4.955811 AAACCAAAACAAGATTCCCTCC 57.044 40.909 0.00 0.00 0.00 4.30
278 318 4.164030 AGCAAAACCAAAACAAGATTCCCT 59.836 37.500 0.00 0.00 0.00 4.20
279 319 4.450976 AGCAAAACCAAAACAAGATTCCC 58.549 39.130 0.00 0.00 0.00 3.97
280 320 5.359756 AGAGCAAAACCAAAACAAGATTCC 58.640 37.500 0.00 0.00 0.00 3.01
281 321 6.908870 AAGAGCAAAACCAAAACAAGATTC 57.091 33.333 0.00 0.00 0.00 2.52
282 322 7.064966 CAGAAAGAGCAAAACCAAAACAAGATT 59.935 33.333 0.00 0.00 0.00 2.40
283 323 6.536224 CAGAAAGAGCAAAACCAAAACAAGAT 59.464 34.615 0.00 0.00 0.00 2.40
285 325 5.446340 GCAGAAAGAGCAAAACCAAAACAAG 60.446 40.000 0.00 0.00 0.00 3.16
286 326 4.391523 GCAGAAAGAGCAAAACCAAAACAA 59.608 37.500 0.00 0.00 0.00 2.83
287 327 3.932089 GCAGAAAGAGCAAAACCAAAACA 59.068 39.130 0.00 0.00 0.00 2.83
288 328 4.183865 AGCAGAAAGAGCAAAACCAAAAC 58.816 39.130 0.00 0.00 0.00 2.43
289 329 4.470334 AGCAGAAAGAGCAAAACCAAAA 57.530 36.364 0.00 0.00 0.00 2.44
290 330 5.590530 TTAGCAGAAAGAGCAAAACCAAA 57.409 34.783 0.00 0.00 0.00 3.28
291 331 5.789643 ATTAGCAGAAAGAGCAAAACCAA 57.210 34.783 0.00 0.00 0.00 3.67
292 332 5.789643 AATTAGCAGAAAGAGCAAAACCA 57.210 34.783 0.00 0.00 0.00 3.67
293 333 5.406477 CCAAATTAGCAGAAAGAGCAAAACC 59.594 40.000 0.00 0.00 0.00 3.27
299 339 6.032717 GTCAATCCAAATTAGCAGAAAGAGC 58.967 40.000 0.00 0.00 0.00 4.09
354 394 5.568423 GCCAGCTTGACTACAGCATATCTAT 60.568 44.000 0.00 0.00 0.00 1.98
360 400 0.617413 AGCCAGCTTGACTACAGCAT 59.383 50.000 0.00 0.00 0.00 3.79
373 413 3.989817 CCAGTTCAAATAAACAAGCCAGC 59.010 43.478 0.00 0.00 0.00 4.85
431 486 3.437213 TGAGAAAGTACATCGAAGGGGA 58.563 45.455 0.00 0.00 0.00 4.81
515 577 8.890718 CATAATGATGAAACAGTGAAGTGAGAT 58.109 33.333 0.00 0.00 34.73 2.75
518 580 7.984422 ACATAATGATGAAACAGTGAAGTGA 57.016 32.000 0.00 0.00 36.48 3.41
519 581 8.291740 TCAACATAATGATGAAACAGTGAAGTG 58.708 33.333 0.00 0.00 36.48 3.16
520 582 8.394971 TCAACATAATGATGAAACAGTGAAGT 57.605 30.769 0.00 0.00 36.48 3.01
521 583 9.499585 GATCAACATAATGATGAAACAGTGAAG 57.500 33.333 0.00 0.00 40.08 3.02
523 585 8.797350 AGATCAACATAATGATGAAACAGTGA 57.203 30.769 0.00 0.00 40.08 3.41
526 589 9.932699 GAAGAGATCAACATAATGATGAAACAG 57.067 33.333 0.00 0.00 40.08 3.16
559 630 4.590647 CAGATAAGCCAACCTGATAGAGGA 59.409 45.833 0.00 0.00 46.33 3.71
569 640 2.446435 TCCAAAGCAGATAAGCCAACC 58.554 47.619 0.00 0.00 34.23 3.77
574 645 5.329035 TGGAAATTCCAAAGCAGATAAGC 57.671 39.130 13.04 0.00 45.00 3.09
643 720 9.321562 CTTTCGCCCCGTTTTATACATATATAT 57.678 33.333 0.00 0.00 0.00 0.86
644 721 7.278424 GCTTTCGCCCCGTTTTATACATATATA 59.722 37.037 0.00 0.00 0.00 0.86
645 722 6.093082 GCTTTCGCCCCGTTTTATACATATAT 59.907 38.462 0.00 0.00 0.00 0.86
647 724 4.214758 GCTTTCGCCCCGTTTTATACATAT 59.785 41.667 0.00 0.00 0.00 1.78
648 725 3.560896 GCTTTCGCCCCGTTTTATACATA 59.439 43.478 0.00 0.00 0.00 2.29
649 726 2.356695 GCTTTCGCCCCGTTTTATACAT 59.643 45.455 0.00 0.00 0.00 2.29
650 727 1.738908 GCTTTCGCCCCGTTTTATACA 59.261 47.619 0.00 0.00 0.00 2.29
663 740 3.623510 AGTTTGCTAAGATAGGCTTTCGC 59.376 43.478 0.00 0.00 38.05 4.70
664 741 4.034510 CCAGTTTGCTAAGATAGGCTTTCG 59.965 45.833 0.00 0.00 38.05 3.46
665 742 5.186198 TCCAGTTTGCTAAGATAGGCTTTC 58.814 41.667 0.00 0.00 38.05 2.62
667 744 4.844349 TCCAGTTTGCTAAGATAGGCTT 57.156 40.909 0.00 0.00 40.68 4.35
668 745 4.844349 TTCCAGTTTGCTAAGATAGGCT 57.156 40.909 0.00 0.00 0.00 4.58
669 746 6.205658 CCTAATTCCAGTTTGCTAAGATAGGC 59.794 42.308 0.00 0.00 0.00 3.93
670 747 7.283329 ACCTAATTCCAGTTTGCTAAGATAGG 58.717 38.462 0.00 0.00 0.00 2.57
671 748 7.987458 TGACCTAATTCCAGTTTGCTAAGATAG 59.013 37.037 0.00 0.00 0.00 2.08
672 749 7.857456 TGACCTAATTCCAGTTTGCTAAGATA 58.143 34.615 0.00 0.00 0.00 1.98
673 750 6.721318 TGACCTAATTCCAGTTTGCTAAGAT 58.279 36.000 0.00 0.00 0.00 2.40
674 751 6.121776 TGACCTAATTCCAGTTTGCTAAGA 57.878 37.500 0.00 0.00 0.00 2.10
675 752 8.682936 ATATGACCTAATTCCAGTTTGCTAAG 57.317 34.615 0.00 0.00 0.00 2.18
679 756 9.683069 CAATAATATGACCTAATTCCAGTTTGC 57.317 33.333 0.00 0.00 0.00 3.68
680 757 9.683069 GCAATAATATGACCTAATTCCAGTTTG 57.317 33.333 0.00 0.00 0.00 2.93
682 759 7.451566 GGGCAATAATATGACCTAATTCCAGTT 59.548 37.037 0.00 0.00 45.73 3.16
683 760 6.948309 GGGCAATAATATGACCTAATTCCAGT 59.052 38.462 0.00 0.00 45.73 4.00
684 761 7.396540 GGGCAATAATATGACCTAATTCCAG 57.603 40.000 0.00 0.00 45.73 3.86
695 772 2.949177 ACAGCGGGGCAATAATATGA 57.051 45.000 0.00 0.00 0.00 2.15
696 773 3.068024 ACAAACAGCGGGGCAATAATATG 59.932 43.478 0.00 0.00 0.00 1.78
697 774 3.295973 ACAAACAGCGGGGCAATAATAT 58.704 40.909 0.00 0.00 0.00 1.28
698 775 2.685897 GACAAACAGCGGGGCAATAATA 59.314 45.455 0.00 0.00 0.00 0.98
699 776 1.476488 GACAAACAGCGGGGCAATAAT 59.524 47.619 0.00 0.00 0.00 1.28
700 777 0.885196 GACAAACAGCGGGGCAATAA 59.115 50.000 0.00 0.00 0.00 1.40
701 778 0.250945 TGACAAACAGCGGGGCAATA 60.251 50.000 0.00 0.00 0.00 1.90
702 779 1.526575 CTGACAAACAGCGGGGCAAT 61.527 55.000 0.00 0.00 39.86 3.56
703 780 2.124109 TGACAAACAGCGGGGCAA 60.124 55.556 0.00 0.00 0.00 4.52
704 781 2.410322 ATCTGACAAACAGCGGGGCA 62.410 55.000 0.00 0.00 45.38 5.36
705 782 1.244019 AATCTGACAAACAGCGGGGC 61.244 55.000 0.00 0.00 45.38 5.80
706 783 1.247567 AAATCTGACAAACAGCGGGG 58.752 50.000 0.00 0.00 45.38 5.73
707 784 3.074412 AGTAAATCTGACAAACAGCGGG 58.926 45.455 0.00 0.00 45.38 6.13
708 785 4.929808 AGTAGTAAATCTGACAAACAGCGG 59.070 41.667 0.00 0.00 45.38 5.52
709 786 5.062308 GGAGTAGTAAATCTGACAAACAGCG 59.938 44.000 0.00 0.00 45.38 5.18
710 787 5.351740 GGGAGTAGTAAATCTGACAAACAGC 59.648 44.000 0.00 0.00 45.38 4.40
711 788 6.702329 AGGGAGTAGTAAATCTGACAAACAG 58.298 40.000 0.00 0.00 46.97 3.16
712 789 6.295688 GGAGGGAGTAGTAAATCTGACAAACA 60.296 42.308 0.00 0.00 0.00 2.83
725 802 8.239478 ACTTATTATGGATTGGAGGGAGTAGTA 58.761 37.037 0.00 0.00 0.00 1.82
732 809 4.997395 CGACACTTATTATGGATTGGAGGG 59.003 45.833 0.00 0.00 0.00 4.30
741 818 4.332543 TCAAAGCTGCGACACTTATTATGG 59.667 41.667 0.00 0.00 0.00 2.74
754 831 2.548057 TCAACCTTAGTTCAAAGCTGCG 59.452 45.455 0.00 0.00 32.45 5.18
776 853 5.235831 GTCGCAGTTTTGAACTAAGGTTAGT 59.764 40.000 0.00 0.00 45.43 2.24
777 854 5.235616 TGTCGCAGTTTTGAACTAAGGTTAG 59.764 40.000 0.00 0.00 40.46 2.34
778 855 5.006941 GTGTCGCAGTTTTGAACTAAGGTTA 59.993 40.000 0.00 0.00 40.46 2.85
782 859 3.560068 AGGTGTCGCAGTTTTGAACTAAG 59.440 43.478 0.00 0.00 40.46 2.18
787 864 5.180492 CCTAAATAGGTGTCGCAGTTTTGAA 59.820 40.000 0.00 0.00 38.69 2.69
797 874 3.057456 CCTCCGATCCTAAATAGGTGTCG 60.057 52.174 20.11 20.11 44.34 4.35
799 876 3.116862 TCCCTCCGATCCTAAATAGGTGT 60.117 47.826 6.39 0.00 44.02 4.16
803 880 5.572252 ACTACTCCCTCCGATCCTAAATAG 58.428 45.833 0.00 0.00 0.00 1.73
809 886 3.658705 AGATTACTACTCCCTCCGATCCT 59.341 47.826 0.00 0.00 0.00 3.24
813 890 5.546887 TCTGATAGATTACTACTCCCTCCGA 59.453 44.000 0.00 0.00 0.00 4.55
851 928 4.022676 ACAAAAGAAAGAAACACACACCGT 60.023 37.500 0.00 0.00 0.00 4.83
853 930 5.923684 TCAACAAAAGAAAGAAACACACACC 59.076 36.000 0.00 0.00 0.00 4.16
856 933 7.009540 CCAGATCAACAAAAGAAAGAAACACAC 59.990 37.037 0.00 0.00 0.00 3.82
882 959 1.512926 AAGATGAAGGCACACACGAC 58.487 50.000 0.00 0.00 0.00 4.34
885 962 4.507710 TCAGATAAGATGAAGGCACACAC 58.492 43.478 0.00 0.00 0.00 3.82
887 964 6.690194 ATTTCAGATAAGATGAAGGCACAC 57.310 37.500 0.00 0.00 37.91 3.82
897 974 9.522804 GACGAGACAGTAAATTTCAGATAAGAT 57.477 33.333 0.00 0.00 0.00 2.40
902 982 6.692486 AGTGACGAGACAGTAAATTTCAGAT 58.308 36.000 0.00 0.00 0.00 2.90
909 989 6.920569 AAACAAAGTGACGAGACAGTAAAT 57.079 33.333 0.00 0.00 0.00 1.40
913 993 5.844004 AGATAAACAAAGTGACGAGACAGT 58.156 37.500 0.00 0.00 0.00 3.55
978 1060 4.286910 TCTGCGTAGTTCAAAATTGCAAC 58.713 39.130 0.00 0.00 0.00 4.17
1014 1096 0.543410 TCTTGCCGGTGAGGGTCTTA 60.543 55.000 1.90 0.00 41.48 2.10
1662 7540 8.028938 GTGAGCAAAAATGTGTTATAACAGGAT 58.971 33.333 18.56 10.76 40.05 3.24
1690 7571 6.483640 ACAGGTTCTAAGTTCTGAACATTCAC 59.516 38.462 21.50 11.09 42.91 3.18
1698 7579 2.288825 CGCCACAGGTTCTAAGTTCTGA 60.289 50.000 0.00 0.00 0.00 3.27
1789 7673 7.094805 GCACCTATGAAAGTACAAGAAATCACA 60.095 37.037 0.00 0.00 0.00 3.58
1799 7683 6.374333 GGAAAATCTGCACCTATGAAAGTACA 59.626 38.462 0.00 0.00 0.00 2.90
1803 7687 5.416952 ACAGGAAAATCTGCACCTATGAAAG 59.583 40.000 0.00 0.00 38.26 2.62
1804 7688 5.324409 ACAGGAAAATCTGCACCTATGAAA 58.676 37.500 0.00 0.00 38.26 2.69
1809 7693 3.073798 TGGAACAGGAAAATCTGCACCTA 59.926 43.478 0.00 0.00 38.26 3.08
1826 7722 4.883585 TGACATAGCTGGAATTGATGGAAC 59.116 41.667 0.00 0.00 0.00 3.62
1833 7729 6.860080 ACAGATTTTGACATAGCTGGAATTG 58.140 36.000 0.00 0.00 0.00 2.32
1835 7731 6.182627 TGACAGATTTTGACATAGCTGGAAT 58.817 36.000 0.00 0.00 0.00 3.01
1840 7736 6.883217 ACAGAATGACAGATTTTGACATAGCT 59.117 34.615 0.00 0.00 40.49 3.32
1843 7739 8.671028 CATCACAGAATGACAGATTTTGACATA 58.329 33.333 0.00 0.00 40.49 2.29
1845 7741 6.487668 ACATCACAGAATGACAGATTTTGACA 59.512 34.615 0.00 0.00 41.24 3.58
1846 7742 6.906659 ACATCACAGAATGACAGATTTTGAC 58.093 36.000 0.00 0.00 41.24 3.18
1847 7743 6.128472 CGACATCACAGAATGACAGATTTTGA 60.128 38.462 0.00 0.00 41.24 2.69
1848 7744 6.019762 CGACATCACAGAATGACAGATTTTG 58.980 40.000 0.00 0.00 41.24 2.44
1849 7745 5.934043 TCGACATCACAGAATGACAGATTTT 59.066 36.000 0.00 0.00 41.24 1.82
1850 7746 5.482006 TCGACATCACAGAATGACAGATTT 58.518 37.500 0.00 0.00 41.24 2.17
1851 7747 5.077134 TCGACATCACAGAATGACAGATT 57.923 39.130 0.00 0.00 41.24 2.40
1852 7748 4.725790 TCGACATCACAGAATGACAGAT 57.274 40.909 0.00 0.00 41.24 2.90
1853 7749 4.519540 TTCGACATCACAGAATGACAGA 57.480 40.909 0.00 0.00 41.24 3.41
1854 7750 5.579904 AGATTTCGACATCACAGAATGACAG 59.420 40.000 13.73 0.00 41.24 3.51
1855 7751 5.349543 CAGATTTCGACATCACAGAATGACA 59.650 40.000 13.73 0.00 41.24 3.58
1856 7752 5.349817 ACAGATTTCGACATCACAGAATGAC 59.650 40.000 13.73 0.00 41.24 3.06
1857 7753 5.482006 ACAGATTTCGACATCACAGAATGA 58.518 37.500 13.73 0.00 43.13 2.57
1858 7754 5.579904 AGACAGATTTCGACATCACAGAATG 59.420 40.000 13.73 4.81 46.00 2.67
1859 7755 5.728471 AGACAGATTTCGACATCACAGAAT 58.272 37.500 13.73 0.00 0.00 2.40
1860 7756 5.139435 AGACAGATTTCGACATCACAGAA 57.861 39.130 13.73 0.00 0.00 3.02
1861 7757 4.790765 AGACAGATTTCGACATCACAGA 57.209 40.909 13.73 0.00 0.00 3.41
1862 7758 5.884771 TCTAGACAGATTTCGACATCACAG 58.115 41.667 13.73 5.88 0.00 3.66
1863 7759 5.897377 TCTAGACAGATTTCGACATCACA 57.103 39.130 13.73 0.00 0.00 3.58
1864 7760 7.915923 TGTTATCTAGACAGATTTCGACATCAC 59.084 37.037 13.73 5.14 41.84 3.06
1867 7763 8.226819 TCTGTTATCTAGACAGATTTCGACAT 57.773 34.615 8.33 0.00 46.21 3.06
1895 7791 7.649705 GCAGGTTTTTCTTCTTCTTTTAGGAAG 59.350 37.037 0.00 0.00 42.72 3.46
1901 7797 4.682787 CGGCAGGTTTTTCTTCTTCTTTT 58.317 39.130 0.00 0.00 0.00 2.27
1962 7873 5.063944 CCTTCGATGTGATCAGTTTGGTTAG 59.936 44.000 0.00 0.00 0.00 2.34
1971 7882 2.120232 GTACGCCTTCGATGTGATCAG 58.880 52.381 0.00 0.00 39.41 2.90
2013 7924 1.377202 GGATCCCAAGCACTTCGCA 60.377 57.895 0.00 0.00 46.13 5.10
2015 7926 0.036010 ACTGGATCCCAAGCACTTCG 60.036 55.000 9.90 0.00 30.80 3.79
2051 7974 2.512896 AGGGACCAGTATAACGAGAGGA 59.487 50.000 0.00 0.00 0.00 3.71
2059 7982 7.743116 TCAACTATTGAAGGGACCAGTATAA 57.257 36.000 0.00 0.00 36.59 0.98
2061 7984 6.386927 TCATCAACTATTGAAGGGACCAGTAT 59.613 38.462 0.00 0.00 43.95 2.12
2062 7985 5.724370 TCATCAACTATTGAAGGGACCAGTA 59.276 40.000 0.00 0.00 43.95 2.74
2063 7986 4.536090 TCATCAACTATTGAAGGGACCAGT 59.464 41.667 0.00 0.00 43.95 4.00
2064 7987 5.102953 TCATCAACTATTGAAGGGACCAG 57.897 43.478 0.00 0.00 43.95 4.00
2065 7988 4.782691 TCTCATCAACTATTGAAGGGACCA 59.217 41.667 0.00 0.00 43.95 4.02
2066 7989 5.359194 TCTCATCAACTATTGAAGGGACC 57.641 43.478 0.00 0.00 43.95 4.46
2067 7990 6.586344 TCATCTCATCAACTATTGAAGGGAC 58.414 40.000 0.00 0.00 40.28 4.46
2068 7991 6.612863 TCTCATCTCATCAACTATTGAAGGGA 59.387 38.462 0.00 0.00 41.52 4.20
2069 7992 6.824553 TCTCATCTCATCAACTATTGAAGGG 58.175 40.000 0.00 0.00 43.95 3.95
2117 8056 6.947733 AGGAGATAAAACAATCATGGTGAACA 59.052 34.615 4.55 0.00 0.00 3.18
2139 8078 4.202233 TGCTGCAAAACAATCATTGAAGGA 60.202 37.500 3.79 0.00 33.53 3.36
2149 8110 6.520272 TGGTTATAAACTGCTGCAAAACAAT 58.480 32.000 3.02 0.00 0.00 2.71
2152 8113 6.155827 TCATGGTTATAAACTGCTGCAAAAC 58.844 36.000 3.02 0.00 0.00 2.43
2182 8143 6.089417 GTGTTGCCATAGCTTTTAATGTGTTC 59.911 38.462 0.00 0.00 40.80 3.18
2204 8165 4.119136 GCATTGCTAAAAACAACTGGTGT 58.881 39.130 0.16 0.00 44.64 4.16
2217 8178 8.093307 TGGAACTTTGAATAATTGCATTGCTAA 58.907 29.630 10.49 3.28 0.00 3.09
2219 8180 6.465948 TGGAACTTTGAATAATTGCATTGCT 58.534 32.000 10.49 0.00 0.00 3.91
2245 8206 5.372373 TGACCATCATGTTTTGTAGTGACA 58.628 37.500 0.00 0.00 0.00 3.58
2251 8212 5.534278 TGCTTCTTGACCATCATGTTTTGTA 59.466 36.000 0.00 0.00 0.00 2.41
2287 8291 2.098614 TGTTTTGCTGCTTCTTGACCA 58.901 42.857 0.00 0.00 0.00 4.02
2288 8292 2.869233 TGTTTTGCTGCTTCTTGACC 57.131 45.000 0.00 0.00 0.00 4.02
2289 8293 7.253883 GCATATAATGTTTTGCTGCTTCTTGAC 60.254 37.037 0.00 0.00 32.41 3.18
2290 8294 6.753279 GCATATAATGTTTTGCTGCTTCTTGA 59.247 34.615 0.00 0.00 32.41 3.02
2291 8295 6.755141 AGCATATAATGTTTTGCTGCTTCTTG 59.245 34.615 0.00 0.00 43.44 3.02
2292 8296 6.870769 AGCATATAATGTTTTGCTGCTTCTT 58.129 32.000 0.00 0.00 43.44 2.52
2293 8297 6.461110 AGCATATAATGTTTTGCTGCTTCT 57.539 33.333 0.00 0.00 43.44 2.85
2299 8303 5.111293 GTTGCCAGCATATAATGTTTTGCT 58.889 37.500 0.00 0.00 45.86 3.91
2300 8304 4.869297 TGTTGCCAGCATATAATGTTTTGC 59.131 37.500 0.00 0.00 35.34 3.68
2301 8305 6.964741 TTGTTGCCAGCATATAATGTTTTG 57.035 33.333 0.00 0.00 0.00 2.44
2302 8306 7.976135 TTTTGTTGCCAGCATATAATGTTTT 57.024 28.000 0.00 0.00 0.00 2.43
2303 8307 7.443575 TGTTTTTGTTGCCAGCATATAATGTTT 59.556 29.630 0.00 0.00 0.00 2.83
2304 8308 6.933521 TGTTTTTGTTGCCAGCATATAATGTT 59.066 30.769 0.00 0.00 0.00 2.71
2305 8309 6.368516 GTGTTTTTGTTGCCAGCATATAATGT 59.631 34.615 0.00 0.00 0.00 2.71
2306 8310 6.368243 TGTGTTTTTGTTGCCAGCATATAATG 59.632 34.615 0.00 0.00 0.00 1.90
2307 8311 6.462500 TGTGTTTTTGTTGCCAGCATATAAT 58.538 32.000 0.00 0.00 0.00 1.28
2308 8312 5.847304 TGTGTTTTTGTTGCCAGCATATAA 58.153 33.333 0.00 0.00 0.00 0.98
2309 8313 5.459536 TGTGTTTTTGTTGCCAGCATATA 57.540 34.783 0.00 0.00 0.00 0.86
2310 8314 4.333913 TGTGTTTTTGTTGCCAGCATAT 57.666 36.364 0.00 0.00 0.00 1.78
2311 8315 3.808466 TGTGTTTTTGTTGCCAGCATA 57.192 38.095 0.00 0.00 0.00 3.14
2312 8316 2.687700 TGTGTTTTTGTTGCCAGCAT 57.312 40.000 0.00 0.00 0.00 3.79
2313 8317 2.462456 TTGTGTTTTTGTTGCCAGCA 57.538 40.000 0.00 0.00 0.00 4.41
2314 8318 4.025813 CAGTATTGTGTTTTTGTTGCCAGC 60.026 41.667 0.00 0.00 0.00 4.85
2315 8319 5.347342 TCAGTATTGTGTTTTTGTTGCCAG 58.653 37.500 0.00 0.00 0.00 4.85
2316 8320 5.330455 TCAGTATTGTGTTTTTGTTGCCA 57.670 34.783 0.00 0.00 0.00 4.92
2317 8321 6.843069 AATCAGTATTGTGTTTTTGTTGCC 57.157 33.333 0.00 0.00 0.00 4.52
2318 8322 7.116233 CCCTAATCAGTATTGTGTTTTTGTTGC 59.884 37.037 0.00 0.00 0.00 4.17
2319 8323 7.598493 CCCCTAATCAGTATTGTGTTTTTGTTG 59.402 37.037 0.00 0.00 0.00 3.33
2320 8324 7.507616 TCCCCTAATCAGTATTGTGTTTTTGTT 59.492 33.333 0.00 0.00 0.00 2.83
2321 8325 7.007723 TCCCCTAATCAGTATTGTGTTTTTGT 58.992 34.615 0.00 0.00 0.00 2.83
2322 8326 7.461182 TCCCCTAATCAGTATTGTGTTTTTG 57.539 36.000 0.00 0.00 0.00 2.44
2323 8327 8.364894 GTTTCCCCTAATCAGTATTGTGTTTTT 58.635 33.333 0.00 0.00 0.00 1.94
2345 8349 5.927030 TCGTTATCAAGCTGTCAATGTTTC 58.073 37.500 0.00 0.00 0.00 2.78
2349 8353 5.464722 AGCTATCGTTATCAAGCTGTCAATG 59.535 40.000 0.00 0.00 43.46 2.82
2350 8354 5.605534 AGCTATCGTTATCAAGCTGTCAAT 58.394 37.500 0.00 0.00 43.46 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.