Multiple sequence alignment - TraesCS7B01G366300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G366300 chr7B 100.000 3311 0 0 1 3311 630136568 630133258 0.000000e+00 6115
1 TraesCS7B01G366300 chr5B 99.112 2366 17 4 1 2364 411793718 411796081 0.000000e+00 4250
2 TraesCS7B01G366300 chr5B 97.801 864 17 2 2335 3196 411796249 411797112 0.000000e+00 1489
3 TraesCS7B01G366300 chr2A 99.112 2366 17 4 1 2364 305827931 305825568 0.000000e+00 4250
4 TraesCS7B01G366300 chr2A 97.034 2326 64 5 1 2322 628570012 628572336 0.000000e+00 3908
5 TraesCS7B01G366300 chr2A 97.032 2325 63 5 1 2322 374483883 374486204 0.000000e+00 3906
6 TraesCS7B01G366300 chr2A 96.946 2325 67 4 1 2322 628648006 628645683 0.000000e+00 3897
7 TraesCS7B01G366300 chr2A 97.454 864 20 2 2335 3196 305825400 305824537 0.000000e+00 1472
8 TraesCS7B01G366300 chr1B 97.161 2325 61 5 1 2322 95492249 95494571 0.000000e+00 3923
9 TraesCS7B01G366300 chr1B 97.075 2325 63 4 1 2322 530763916 530761594 0.000000e+00 3912
10 TraesCS7B01G366300 chr1A 96.905 2326 68 4 1 2322 409609440 409611765 0.000000e+00 3893
11 TraesCS7B01G366300 chr2B 96.817 2325 69 5 1 2322 424684809 424682487 0.000000e+00 3879
12 TraesCS7B01G366300 chr6B 94.645 859 43 3 2332 3188 519185749 519186606 0.000000e+00 1328
13 TraesCS7B01G366300 chr7A 92.784 873 52 7 2332 3202 2871094 2871957 0.000000e+00 1253
14 TraesCS7B01G366300 chr7A 92.765 857 52 4 2350 3202 85877960 85877110 0.000000e+00 1230
15 TraesCS7B01G366300 chr3A 93.176 850 50 4 2350 3198 26421018 26420176 0.000000e+00 1242
16 TraesCS7B01G366300 chr3A 92.857 854 52 5 2350 3202 716469241 716468396 0.000000e+00 1230
17 TraesCS7B01G366300 chr6A 92.529 870 55 6 2332 3198 604392623 604393485 0.000000e+00 1238
18 TraesCS7B01G366300 chr4A 92.317 872 55 6 2332 3198 684409259 684410123 0.000000e+00 1229
19 TraesCS7B01G366300 chr7D 88.889 126 1 1 3198 3310 572723259 572723134 3.440000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G366300 chr7B 630133258 630136568 3310 True 6115.0 6115 100.0000 1 3311 1 chr7B.!!$R1 3310
1 TraesCS7B01G366300 chr5B 411793718 411797112 3394 False 2869.5 4250 98.4565 1 3196 2 chr5B.!!$F1 3195
2 TraesCS7B01G366300 chr2A 628570012 628572336 2324 False 3908.0 3908 97.0340 1 2322 1 chr2A.!!$F2 2321
3 TraesCS7B01G366300 chr2A 374483883 374486204 2321 False 3906.0 3906 97.0320 1 2322 1 chr2A.!!$F1 2321
4 TraesCS7B01G366300 chr2A 628645683 628648006 2323 True 3897.0 3897 96.9460 1 2322 1 chr2A.!!$R1 2321
5 TraesCS7B01G366300 chr2A 305824537 305827931 3394 True 2861.0 4250 98.2830 1 3196 2 chr2A.!!$R2 3195
6 TraesCS7B01G366300 chr1B 95492249 95494571 2322 False 3923.0 3923 97.1610 1 2322 1 chr1B.!!$F1 2321
7 TraesCS7B01G366300 chr1B 530761594 530763916 2322 True 3912.0 3912 97.0750 1 2322 1 chr1B.!!$R1 2321
8 TraesCS7B01G366300 chr1A 409609440 409611765 2325 False 3893.0 3893 96.9050 1 2322 1 chr1A.!!$F1 2321
9 TraesCS7B01G366300 chr2B 424682487 424684809 2322 True 3879.0 3879 96.8170 1 2322 1 chr2B.!!$R1 2321
10 TraesCS7B01G366300 chr6B 519185749 519186606 857 False 1328.0 1328 94.6450 2332 3188 1 chr6B.!!$F1 856
11 TraesCS7B01G366300 chr7A 2871094 2871957 863 False 1253.0 1253 92.7840 2332 3202 1 chr7A.!!$F1 870
12 TraesCS7B01G366300 chr7A 85877110 85877960 850 True 1230.0 1230 92.7650 2350 3202 1 chr7A.!!$R1 852
13 TraesCS7B01G366300 chr3A 26420176 26421018 842 True 1242.0 1242 93.1760 2350 3198 1 chr3A.!!$R1 848
14 TraesCS7B01G366300 chr3A 716468396 716469241 845 True 1230.0 1230 92.8570 2350 3202 1 chr3A.!!$R2 852
15 TraesCS7B01G366300 chr6A 604392623 604393485 862 False 1238.0 1238 92.5290 2332 3198 1 chr6A.!!$F1 866
16 TraesCS7B01G366300 chr4A 684409259 684410123 864 False 1229.0 1229 92.3170 2332 3198 1 chr4A.!!$F1 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 446 3.350219 ACAGCGGATTTCATGTACCTT 57.650 42.857 0.0 0.0 0.0 3.50 F
1064 1069 2.741145 AGCTGTCGAAAGGGATAGAGT 58.259 47.619 4.4 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1818 3.317603 TGAGCAATGTGATGACTCGAA 57.682 42.857 0.0 0.0 0.00 3.71 R
2509 2717 7.844009 AGAAATATCAAATGGACAGCAACATT 58.156 30.769 0.0 0.0 38.85 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 446 3.350219 ACAGCGGATTTCATGTACCTT 57.650 42.857 0.00 0.00 0.00 3.50
1064 1069 2.741145 AGCTGTCGAAAGGGATAGAGT 58.259 47.619 4.40 0.00 0.00 3.24
1810 1818 6.674419 AGAAGGGACATATAACTTCACCTCTT 59.326 38.462 0.00 0.00 41.25 2.85
2698 2910 3.549412 TGCCAATGCAGTGTATCGT 57.451 47.368 13.82 0.00 44.23 3.73
2737 2949 7.009265 CGACATCGGCGAGATAAATTATGTAAT 59.991 37.037 17.22 0.00 37.52 1.89
3198 3411 1.544246 GGCAACCGAACAAAGCCTAAT 59.456 47.619 0.00 0.00 42.01 1.73
3202 3415 3.366052 ACCGAACAAAGCCTAATGGAT 57.634 42.857 0.00 0.00 34.57 3.41
3203 3416 3.279434 ACCGAACAAAGCCTAATGGATC 58.721 45.455 0.00 0.00 34.57 3.36
3204 3417 3.278574 CCGAACAAAGCCTAATGGATCA 58.721 45.455 0.00 0.00 34.57 2.92
3205 3418 3.313526 CCGAACAAAGCCTAATGGATCAG 59.686 47.826 0.00 0.00 34.57 2.90
3206 3419 4.191544 CGAACAAAGCCTAATGGATCAGA 58.808 43.478 0.00 0.00 34.57 3.27
3207 3420 4.034510 CGAACAAAGCCTAATGGATCAGAC 59.965 45.833 0.00 0.00 34.57 3.51
3208 3421 3.891049 ACAAAGCCTAATGGATCAGACC 58.109 45.455 0.00 0.00 34.57 3.85
3209 3422 3.266772 ACAAAGCCTAATGGATCAGACCA 59.733 43.478 0.00 0.00 44.41 4.02
3210 3423 3.853355 AAGCCTAATGGATCAGACCAG 57.147 47.619 0.00 0.00 43.49 4.00
3211 3424 3.051940 AGCCTAATGGATCAGACCAGA 57.948 47.619 0.00 0.00 43.49 3.86
3212 3425 2.971330 AGCCTAATGGATCAGACCAGAG 59.029 50.000 0.00 0.00 43.49 3.35
3213 3426 2.968574 GCCTAATGGATCAGACCAGAGA 59.031 50.000 0.00 0.00 43.49 3.10
3214 3427 3.389329 GCCTAATGGATCAGACCAGAGAA 59.611 47.826 0.00 0.00 43.49 2.87
3215 3428 4.742138 GCCTAATGGATCAGACCAGAGAAC 60.742 50.000 0.00 0.00 43.49 3.01
3216 3429 4.406972 CCTAATGGATCAGACCAGAGAACA 59.593 45.833 0.00 0.00 43.49 3.18
3217 3430 4.916041 AATGGATCAGACCAGAGAACAA 57.084 40.909 0.00 0.00 43.49 2.83
3218 3431 3.969287 TGGATCAGACCAGAGAACAAG 57.031 47.619 0.00 0.00 34.77 3.16
3219 3432 3.510459 TGGATCAGACCAGAGAACAAGA 58.490 45.455 0.00 0.00 34.77 3.02
3220 3433 4.099633 TGGATCAGACCAGAGAACAAGAT 58.900 43.478 0.00 0.00 34.77 2.40
3221 3434 5.272402 TGGATCAGACCAGAGAACAAGATA 58.728 41.667 0.00 0.00 34.77 1.98
3222 3435 5.721480 TGGATCAGACCAGAGAACAAGATAA 59.279 40.000 0.00 0.00 34.77 1.75
3223 3436 6.045955 GGATCAGACCAGAGAACAAGATAAC 58.954 44.000 0.00 0.00 0.00 1.89
3224 3437 6.127196 GGATCAGACCAGAGAACAAGATAACT 60.127 42.308 0.00 0.00 0.00 2.24
3225 3438 6.030548 TCAGACCAGAGAACAAGATAACTG 57.969 41.667 0.00 0.00 0.00 3.16
3226 3439 5.775195 TCAGACCAGAGAACAAGATAACTGA 59.225 40.000 0.00 0.00 0.00 3.41
3227 3440 6.438741 TCAGACCAGAGAACAAGATAACTGAT 59.561 38.462 0.00 0.00 0.00 2.90
3228 3441 6.756074 CAGACCAGAGAACAAGATAACTGATC 59.244 42.308 0.00 0.00 34.40 2.92
3229 3442 5.655488 ACCAGAGAACAAGATAACTGATCG 58.345 41.667 0.00 0.00 39.80 3.69
3230 3443 5.419155 ACCAGAGAACAAGATAACTGATCGA 59.581 40.000 0.00 0.00 39.80 3.59
3231 3444 5.746245 CCAGAGAACAAGATAACTGATCGAC 59.254 44.000 0.00 0.00 39.80 4.20
3232 3445 6.325596 CAGAGAACAAGATAACTGATCGACA 58.674 40.000 0.00 0.00 39.80 4.35
3246 3459 6.099579 CTGATCGACAGTTAAATCACAAGG 57.900 41.667 0.00 0.00 41.30 3.61
3247 3460 5.547465 TGATCGACAGTTAAATCACAAGGT 58.453 37.500 0.00 0.00 0.00 3.50
3248 3461 5.995282 TGATCGACAGTTAAATCACAAGGTT 59.005 36.000 0.00 0.00 0.00 3.50
3249 3462 7.156000 TGATCGACAGTTAAATCACAAGGTTA 58.844 34.615 0.00 0.00 0.00 2.85
3250 3463 7.330946 TGATCGACAGTTAAATCACAAGGTTAG 59.669 37.037 0.00 0.00 0.00 2.34
3251 3464 5.929992 TCGACAGTTAAATCACAAGGTTAGG 59.070 40.000 0.00 0.00 0.00 2.69
3252 3465 5.929992 CGACAGTTAAATCACAAGGTTAGGA 59.070 40.000 0.00 0.00 0.00 2.94
3253 3466 6.594159 CGACAGTTAAATCACAAGGTTAGGAT 59.406 38.462 0.00 0.00 0.00 3.24
3254 3467 7.413000 CGACAGTTAAATCACAAGGTTAGGATG 60.413 40.741 0.00 0.00 0.00 3.51
3255 3468 6.151144 ACAGTTAAATCACAAGGTTAGGATGC 59.849 38.462 0.00 0.00 0.00 3.91
3256 3469 6.375455 CAGTTAAATCACAAGGTTAGGATGCT 59.625 38.462 0.00 0.00 0.00 3.79
3257 3470 7.552687 CAGTTAAATCACAAGGTTAGGATGCTA 59.447 37.037 0.00 0.00 0.00 3.49
3258 3471 8.107095 AGTTAAATCACAAGGTTAGGATGCTAA 58.893 33.333 2.04 2.04 0.00 3.09
3259 3472 8.736244 GTTAAATCACAAGGTTAGGATGCTAAA 58.264 33.333 8.41 0.00 0.00 1.85
3260 3473 7.961326 AAATCACAAGGTTAGGATGCTAAAT 57.039 32.000 8.41 0.00 0.00 1.40
3261 3474 7.961326 AATCACAAGGTTAGGATGCTAAATT 57.039 32.000 8.41 4.28 0.00 1.82
3262 3475 7.961326 ATCACAAGGTTAGGATGCTAAATTT 57.039 32.000 8.41 3.64 0.00 1.82
3263 3476 9.474313 AATCACAAGGTTAGGATGCTAAATTTA 57.526 29.630 8.41 0.00 0.00 1.40
3264 3477 8.871629 TCACAAGGTTAGGATGCTAAATTTAA 57.128 30.769 8.41 0.00 0.00 1.52
3265 3478 8.736244 TCACAAGGTTAGGATGCTAAATTTAAC 58.264 33.333 8.41 0.00 0.00 2.01
3266 3479 8.519526 CACAAGGTTAGGATGCTAAATTTAACA 58.480 33.333 8.41 3.88 0.00 2.41
3267 3480 9.255029 ACAAGGTTAGGATGCTAAATTTAACAT 57.745 29.630 12.75 12.75 0.00 2.71
3268 3481 9.520204 CAAGGTTAGGATGCTAAATTTAACATG 57.480 33.333 16.78 0.00 0.00 3.21
3269 3482 9.474313 AAGGTTAGGATGCTAAATTTAACATGA 57.526 29.630 16.78 2.26 0.00 3.07
3270 3483 9.474313 AGGTTAGGATGCTAAATTTAACATGAA 57.526 29.630 16.78 7.23 0.00 2.57
3271 3484 9.736023 GGTTAGGATGCTAAATTTAACATGAAG 57.264 33.333 16.78 0.00 0.00 3.02
3272 3485 9.237846 GTTAGGATGCTAAATTTAACATGAAGC 57.762 33.333 16.78 8.95 0.00 3.86
3273 3486 7.651027 AGGATGCTAAATTTAACATGAAGCT 57.349 32.000 16.78 0.00 0.00 3.74
3274 3487 8.752005 AGGATGCTAAATTTAACATGAAGCTA 57.248 30.769 16.78 1.54 0.00 3.32
3275 3488 9.189156 AGGATGCTAAATTTAACATGAAGCTAA 57.811 29.630 16.78 0.00 0.00 3.09
3276 3489 9.237846 GGATGCTAAATTTAACATGAAGCTAAC 57.762 33.333 16.78 2.60 0.00 2.34
3277 3490 9.237846 GATGCTAAATTTAACATGAAGCTAACC 57.762 33.333 16.78 0.00 0.00 2.85
3278 3491 7.247728 TGCTAAATTTAACATGAAGCTAACCG 58.752 34.615 0.00 0.00 0.00 4.44
3279 3492 7.119992 TGCTAAATTTAACATGAAGCTAACCGA 59.880 33.333 0.00 0.00 0.00 4.69
3280 3493 7.640240 GCTAAATTTAACATGAAGCTAACCGAG 59.360 37.037 0.00 0.00 0.00 4.63
3281 3494 7.681939 AAATTTAACATGAAGCTAACCGAGA 57.318 32.000 0.00 0.00 0.00 4.04
3282 3495 7.681939 AATTTAACATGAAGCTAACCGAGAA 57.318 32.000 0.00 0.00 0.00 2.87
3283 3496 7.865706 ATTTAACATGAAGCTAACCGAGAAT 57.134 32.000 0.00 0.00 0.00 2.40
3284 3497 6.903883 TTAACATGAAGCTAACCGAGAATC 57.096 37.500 0.00 0.00 0.00 2.52
3297 3510 2.821307 GAGAATCGAAAAGGCAGCAG 57.179 50.000 0.00 0.00 0.00 4.24
3298 3511 2.350522 GAGAATCGAAAAGGCAGCAGA 58.649 47.619 0.00 0.00 0.00 4.26
3299 3512 2.351111 GAGAATCGAAAAGGCAGCAGAG 59.649 50.000 0.00 0.00 0.00 3.35
3300 3513 1.399791 GAATCGAAAAGGCAGCAGAGG 59.600 52.381 0.00 0.00 0.00 3.69
3301 3514 0.393537 ATCGAAAAGGCAGCAGAGGG 60.394 55.000 0.00 0.00 0.00 4.30
3302 3515 2.042831 CGAAAAGGCAGCAGAGGGG 61.043 63.158 0.00 0.00 0.00 4.79
3303 3516 1.380302 GAAAAGGCAGCAGAGGGGA 59.620 57.895 0.00 0.00 0.00 4.81
3304 3517 0.251341 GAAAAGGCAGCAGAGGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
3305 3518 0.411058 AAAAGGCAGCAGAGGGGAAT 59.589 50.000 0.00 0.00 0.00 3.01
3306 3519 0.033699 AAAGGCAGCAGAGGGGAATC 60.034 55.000 0.00 0.00 0.00 2.52
3307 3520 2.203126 GGCAGCAGAGGGGAATCG 60.203 66.667 0.00 0.00 0.00 3.34
3308 3521 2.899339 GCAGCAGAGGGGAATCGC 60.899 66.667 0.00 0.00 0.00 4.58
3309 3522 2.587194 CAGCAGAGGGGAATCGCG 60.587 66.667 0.00 0.00 0.00 5.87
3310 3523 3.854669 AGCAGAGGGGAATCGCGG 61.855 66.667 6.13 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 446 2.817258 CAACCAGATAAAACTTGCCCGA 59.183 45.455 0.00 0.00 0.00 5.14
1064 1069 2.292257 ACACTGCCTGTAGGAGGTGATA 60.292 50.000 21.63 0.00 44.97 2.15
1810 1818 3.317603 TGAGCAATGTGATGACTCGAA 57.682 42.857 0.00 0.00 0.00 3.71
2347 2555 8.745464 GTTAAAAGGAACAACTGTTAACAACA 57.255 30.769 10.03 0.00 44.76 3.33
2509 2717 7.844009 AGAAATATCAAATGGACAGCAACATT 58.156 30.769 0.00 0.00 38.85 2.71
3198 3411 3.510459 TCTTGTTCTCTGGTCTGATCCA 58.490 45.455 0.00 0.00 36.00 3.41
3202 3415 5.775195 TCAGTTATCTTGTTCTCTGGTCTGA 59.225 40.000 0.00 0.00 0.00 3.27
3203 3416 6.030548 TCAGTTATCTTGTTCTCTGGTCTG 57.969 41.667 0.00 0.00 0.00 3.51
3204 3417 6.405286 CGATCAGTTATCTTGTTCTCTGGTCT 60.405 42.308 0.00 0.00 32.84 3.85
3205 3418 5.746245 CGATCAGTTATCTTGTTCTCTGGTC 59.254 44.000 0.00 0.00 31.87 4.02
3206 3419 5.419155 TCGATCAGTTATCTTGTTCTCTGGT 59.581 40.000 0.00 0.00 31.87 4.00
3207 3420 5.746245 GTCGATCAGTTATCTTGTTCTCTGG 59.254 44.000 0.00 0.00 31.87 3.86
3208 3421 6.325596 TGTCGATCAGTTATCTTGTTCTCTG 58.674 40.000 0.00 0.00 31.87 3.35
3209 3422 6.516739 TGTCGATCAGTTATCTTGTTCTCT 57.483 37.500 0.00 0.00 31.87 3.10
3210 3423 6.804534 CTGTCGATCAGTTATCTTGTTCTC 57.195 41.667 6.79 0.00 39.17 2.87
3224 3437 5.547465 ACCTTGTGATTTAACTGTCGATCA 58.453 37.500 0.00 0.00 0.00 2.92
3225 3438 6.481954 AACCTTGTGATTTAACTGTCGATC 57.518 37.500 0.00 0.00 0.00 3.69
3226 3439 6.594159 CCTAACCTTGTGATTTAACTGTCGAT 59.406 38.462 0.00 0.00 0.00 3.59
3227 3440 5.929992 CCTAACCTTGTGATTTAACTGTCGA 59.070 40.000 0.00 0.00 0.00 4.20
3228 3441 5.929992 TCCTAACCTTGTGATTTAACTGTCG 59.070 40.000 0.00 0.00 0.00 4.35
3229 3442 7.626452 GCATCCTAACCTTGTGATTTAACTGTC 60.626 40.741 0.00 0.00 0.00 3.51
3230 3443 6.151144 GCATCCTAACCTTGTGATTTAACTGT 59.849 38.462 0.00 0.00 0.00 3.55
3231 3444 6.375455 AGCATCCTAACCTTGTGATTTAACTG 59.625 38.462 0.00 0.00 0.00 3.16
3232 3445 6.485171 AGCATCCTAACCTTGTGATTTAACT 58.515 36.000 0.00 0.00 0.00 2.24
3233 3446 6.759497 AGCATCCTAACCTTGTGATTTAAC 57.241 37.500 0.00 0.00 0.00 2.01
3234 3447 8.871629 TTTAGCATCCTAACCTTGTGATTTAA 57.128 30.769 0.00 0.00 33.43 1.52
3235 3448 9.474313 AATTTAGCATCCTAACCTTGTGATTTA 57.526 29.630 0.00 0.00 33.43 1.40
3236 3449 7.961326 ATTTAGCATCCTAACCTTGTGATTT 57.039 32.000 0.00 0.00 33.43 2.17
3237 3450 7.961326 AATTTAGCATCCTAACCTTGTGATT 57.039 32.000 0.00 0.00 33.43 2.57
3238 3451 7.961326 AAATTTAGCATCCTAACCTTGTGAT 57.039 32.000 0.00 0.00 33.43 3.06
3239 3452 8.736244 GTTAAATTTAGCATCCTAACCTTGTGA 58.264 33.333 7.14 0.00 33.43 3.58
3240 3453 8.519526 TGTTAAATTTAGCATCCTAACCTTGTG 58.480 33.333 10.34 0.00 33.43 3.33
3241 3454 8.644374 TGTTAAATTTAGCATCCTAACCTTGT 57.356 30.769 10.34 0.00 33.43 3.16
3242 3455 9.520204 CATGTTAAATTTAGCATCCTAACCTTG 57.480 33.333 20.74 7.94 33.16 3.61
3243 3456 9.474313 TCATGTTAAATTTAGCATCCTAACCTT 57.526 29.630 20.74 0.04 33.16 3.50
3244 3457 9.474313 TTCATGTTAAATTTAGCATCCTAACCT 57.526 29.630 20.74 0.67 33.16 3.50
3245 3458 9.736023 CTTCATGTTAAATTTAGCATCCTAACC 57.264 33.333 20.74 0.00 33.16 2.85
3246 3459 9.237846 GCTTCATGTTAAATTTAGCATCCTAAC 57.762 33.333 20.74 6.86 33.16 2.34
3247 3460 9.189156 AGCTTCATGTTAAATTTAGCATCCTAA 57.811 29.630 20.74 14.94 33.16 2.69
3248 3461 8.752005 AGCTTCATGTTAAATTTAGCATCCTA 57.248 30.769 20.74 9.74 33.16 2.94
3249 3462 7.651027 AGCTTCATGTTAAATTTAGCATCCT 57.349 32.000 20.74 13.23 33.16 3.24
3250 3463 9.237846 GTTAGCTTCATGTTAAATTTAGCATCC 57.762 33.333 20.74 11.67 33.16 3.51
3251 3464 9.237846 GGTTAGCTTCATGTTAAATTTAGCATC 57.762 33.333 20.74 12.04 33.16 3.91
3252 3465 7.915397 CGGTTAGCTTCATGTTAAATTTAGCAT 59.085 33.333 18.60 18.60 35.37 3.79
3253 3466 7.119992 TCGGTTAGCTTCATGTTAAATTTAGCA 59.880 33.333 15.85 15.85 0.00 3.49
3254 3467 7.469260 TCGGTTAGCTTCATGTTAAATTTAGC 58.531 34.615 5.19 5.19 0.00 3.09
3255 3468 8.879759 TCTCGGTTAGCTTCATGTTAAATTTAG 58.120 33.333 0.00 0.00 0.00 1.85
3256 3469 8.780846 TCTCGGTTAGCTTCATGTTAAATTTA 57.219 30.769 0.00 0.00 0.00 1.40
3257 3470 7.681939 TCTCGGTTAGCTTCATGTTAAATTT 57.318 32.000 0.00 0.00 0.00 1.82
3258 3471 7.681939 TTCTCGGTTAGCTTCATGTTAAATT 57.318 32.000 0.00 0.00 0.00 1.82
3259 3472 7.254455 CGATTCTCGGTTAGCTTCATGTTAAAT 60.254 37.037 0.00 0.00 36.00 1.40
3260 3473 6.035650 CGATTCTCGGTTAGCTTCATGTTAAA 59.964 38.462 0.00 0.00 36.00 1.52
3261 3474 5.518847 CGATTCTCGGTTAGCTTCATGTTAA 59.481 40.000 0.00 0.00 36.00 2.01
3262 3475 5.041287 CGATTCTCGGTTAGCTTCATGTTA 58.959 41.667 0.00 0.00 36.00 2.41
3263 3476 3.865745 CGATTCTCGGTTAGCTTCATGTT 59.134 43.478 0.00 0.00 36.00 2.71
3264 3477 3.130516 TCGATTCTCGGTTAGCTTCATGT 59.869 43.478 0.00 0.00 40.88 3.21
3265 3478 3.706698 TCGATTCTCGGTTAGCTTCATG 58.293 45.455 0.00 0.00 40.88 3.07
3266 3479 4.386867 TTCGATTCTCGGTTAGCTTCAT 57.613 40.909 0.00 0.00 40.88 2.57
3267 3480 3.861276 TTCGATTCTCGGTTAGCTTCA 57.139 42.857 0.00 0.00 40.88 3.02
3268 3481 4.033014 CCTTTTCGATTCTCGGTTAGCTTC 59.967 45.833 0.00 0.00 40.88 3.86
3269 3482 3.933332 CCTTTTCGATTCTCGGTTAGCTT 59.067 43.478 0.00 0.00 40.88 3.74
3270 3483 3.522553 CCTTTTCGATTCTCGGTTAGCT 58.477 45.455 0.00 0.00 40.88 3.32
3271 3484 2.030579 GCCTTTTCGATTCTCGGTTAGC 59.969 50.000 0.00 0.00 40.88 3.09
3272 3485 3.259064 TGCCTTTTCGATTCTCGGTTAG 58.741 45.455 0.00 0.00 40.88 2.34
3273 3486 3.259064 CTGCCTTTTCGATTCTCGGTTA 58.741 45.455 0.00 0.00 40.88 2.85
3274 3487 2.076863 CTGCCTTTTCGATTCTCGGTT 58.923 47.619 0.00 0.00 40.88 4.44
3275 3488 1.726853 CTGCCTTTTCGATTCTCGGT 58.273 50.000 0.00 0.00 40.88 4.69
3276 3489 0.375106 GCTGCCTTTTCGATTCTCGG 59.625 55.000 0.00 0.00 40.88 4.63
3277 3490 1.061711 CTGCTGCCTTTTCGATTCTCG 59.938 52.381 0.00 0.00 42.10 4.04
3278 3491 2.350522 TCTGCTGCCTTTTCGATTCTC 58.649 47.619 0.00 0.00 0.00 2.87
3279 3492 2.354259 CTCTGCTGCCTTTTCGATTCT 58.646 47.619 0.00 0.00 0.00 2.40
3280 3493 1.399791 CCTCTGCTGCCTTTTCGATTC 59.600 52.381 0.00 0.00 0.00 2.52
3281 3494 1.457346 CCTCTGCTGCCTTTTCGATT 58.543 50.000 0.00 0.00 0.00 3.34
3282 3495 0.393537 CCCTCTGCTGCCTTTTCGAT 60.394 55.000 0.00 0.00 0.00 3.59
3283 3496 1.003355 CCCTCTGCTGCCTTTTCGA 60.003 57.895 0.00 0.00 0.00 3.71
3284 3497 2.042831 CCCCTCTGCTGCCTTTTCG 61.043 63.158 0.00 0.00 0.00 3.46
3285 3498 0.251341 TTCCCCTCTGCTGCCTTTTC 60.251 55.000 0.00 0.00 0.00 2.29
3286 3499 0.411058 ATTCCCCTCTGCTGCCTTTT 59.589 50.000 0.00 0.00 0.00 2.27
3287 3500 0.033699 GATTCCCCTCTGCTGCCTTT 60.034 55.000 0.00 0.00 0.00 3.11
3288 3501 1.611965 GATTCCCCTCTGCTGCCTT 59.388 57.895 0.00 0.00 0.00 4.35
3289 3502 2.739996 CGATTCCCCTCTGCTGCCT 61.740 63.158 0.00 0.00 0.00 4.75
3290 3503 2.203126 CGATTCCCCTCTGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
3291 3504 2.899339 GCGATTCCCCTCTGCTGC 60.899 66.667 0.00 0.00 0.00 5.25
3292 3505 2.587194 CGCGATTCCCCTCTGCTG 60.587 66.667 0.00 0.00 0.00 4.41
3293 3506 3.854669 CCGCGATTCCCCTCTGCT 61.855 66.667 8.23 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.