Multiple sequence alignment - TraesCS7B01G365700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7B01G365700
chr7B
100.000
2839
0
0
2220
5058
629581589
629578751
0.000000e+00
5243.0
1
TraesCS7B01G365700
chr7B
100.000
1774
0
0
1
1774
629583808
629582035
0.000000e+00
3277.0
2
TraesCS7B01G365700
chr7B
78.528
163
26
8
4581
4740
699363190
699363034
1.160000e-16
99.0
3
TraesCS7B01G365700
chr7A
95.466
1213
42
7
2915
4123
661594032
661595235
0.000000e+00
1923.0
4
TraesCS7B01G365700
chr7A
93.139
787
26
11
991
1761
661589226
661590000
0.000000e+00
1129.0
5
TraesCS7B01G365700
chr7A
92.751
676
38
10
18
686
661588144
661588815
0.000000e+00
966.0
6
TraesCS7B01G365700
chr7A
77.899
828
118
33
4134
4923
661596358
661597158
5.970000e-124
455.0
7
TraesCS7B01G365700
chr7A
92.910
268
14
3
2220
2482
661590350
661590617
7.940000e-103
385.0
8
TraesCS7B01G365700
chr7A
91.707
205
14
3
684
886
661588910
661589113
1.070000e-71
281.0
9
TraesCS7B01G365700
chr7A
91.960
199
14
2
2708
2906
661591501
661591697
1.390000e-70
278.0
10
TraesCS7B01G365700
chr7A
88.261
230
20
6
2494
2717
661590902
661591130
8.350000e-68
268.0
11
TraesCS7B01G365700
chr7A
95.902
122
4
1
841
961
661589109
661589230
3.990000e-46
196.0
12
TraesCS7B01G365700
chr7D
95.317
1153
38
5
2972
4123
572553692
572554829
0.000000e+00
1816.0
13
TraesCS7B01G365700
chr7D
95.690
928
21
6
841
1767
572548792
572549701
0.000000e+00
1474.0
14
TraesCS7B01G365700
chr7D
94.712
832
33
9
34
860
572547940
572548765
0.000000e+00
1282.0
15
TraesCS7B01G365700
chr7D
97.660
470
10
1
2509
2977
572550548
572551017
0.000000e+00
806.0
16
TraesCS7B01G365700
chr7D
81.091
825
103
29
4135
4923
572562496
572563303
1.200000e-170
610.0
17
TraesCS7B01G365700
chr7D
98.859
263
3
0
2220
2482
572549805
572550067
2.130000e-128
470.0
18
TraesCS7B01G365700
chr7D
74.805
385
65
23
4388
4754
5318754
5318384
1.470000e-30
145.0
19
TraesCS7B01G365700
chr7D
73.976
415
79
18
4360
4754
145910527
145910122
1.900000e-29
141.0
20
TraesCS7B01G365700
chr7D
73.243
441
95
15
4327
4750
47425851
47425417
6.830000e-29
139.0
21
TraesCS7B01G365700
chr7D
78.075
187
34
6
4571
4754
610795416
610795598
1.490000e-20
111.0
22
TraesCS7B01G365700
chr4A
86.915
1559
156
30
2535
4064
140978140
140979679
0.000000e+00
1705.0
23
TraesCS7B01G365700
chr4A
79.837
734
110
21
934
1634
140975952
140976680
7.560000e-138
501.0
24
TraesCS7B01G365700
chr4A
90.055
362
36
0
2977
3338
253273855
253274216
2.130000e-128
470.0
25
TraesCS7B01G365700
chr4A
87.981
208
21
3
2220
2424
140977198
140977404
5.060000e-60
243.0
26
TraesCS7B01G365700
chr4A
88.235
85
6
3
1664
1748
140976975
140977055
1.160000e-16
99.0
27
TraesCS7B01G365700
chr4D
86.120
1585
170
29
2514
4067
329138818
329137253
0.000000e+00
1663.0
28
TraesCS7B01G365700
chr4D
84.054
671
74
20
1092
1748
329140312
329139661
2.590000e-172
616.0
29
TraesCS7B01G365700
chr4D
92.913
127
9
0
2226
2352
329139513
329139387
8.650000e-43
185.0
30
TraesCS7B01G365700
chr4D
73.394
436
90
20
4324
4741
344128374
344128801
6.830000e-29
139.0
31
TraesCS7B01G365700
chr4D
81.379
145
17
6
4
141
6475652
6475793
5.350000e-20
110.0
32
TraesCS7B01G365700
chr1B
86.176
1577
169
29
2514
4059
135815951
135817509
0.000000e+00
1659.0
33
TraesCS7B01G365700
chr1B
83.432
676
82
19
1083
1748
135814422
135815077
7.250000e-168
601.0
34
TraesCS7B01G365700
chr1B
85.818
275
25
7
2220
2482
135815198
135815470
3.860000e-71
279.0
35
TraesCS7B01G365700
chr4B
87.050
1112
117
18
2963
4062
408980681
408979585
0.000000e+00
1230.0
36
TraesCS7B01G365700
chr4B
83.735
664
81
18
1092
1748
408984260
408983617
2.010000e-168
603.0
37
TraesCS7B01G365700
chr4B
87.409
413
44
5
2514
2922
408982804
408982396
7.670000e-128
468.0
38
TraesCS7B01G365700
chr4B
93.333
120
8
0
2233
2352
408983462
408983343
1.450000e-40
178.0
39
TraesCS7B01G365700
chr2B
81.609
174
32
0
4576
4749
393475399
393475226
1.470000e-30
145.0
40
TraesCS7B01G365700
chr2B
78.977
176
28
8
4571
4741
653584452
653584623
1.490000e-20
111.0
41
TraesCS7B01G365700
chr5A
82.069
145
22
4
4918
5058
545051658
545051802
2.470000e-23
121.0
42
TraesCS7B01G365700
chr2D
73.048
397
75
21
4331
4709
546780088
546780470
1.490000e-20
111.0
43
TraesCS7B01G365700
chr3B
80.690
145
16
11
3
141
586432407
586432545
8.960000e-18
102.0
44
TraesCS7B01G365700
chr6B
80.137
146
17
8
5
141
712129552
712129694
1.160000e-16
99.0
45
TraesCS7B01G365700
chr5D
77.966
118
21
3
4920
5034
356322751
356322636
9.090000e-08
69.4
46
TraesCS7B01G365700
chr2A
95.238
42
2
0
4918
4959
371345370
371345329
3.270000e-07
67.6
47
TraesCS7B01G365700
chr1A
100.000
33
0
0
5
37
52835817
52835785
1.520000e-05
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7B01G365700
chr7B
629578751
629583808
5057
True
4260.000000
5243
100.000000
1
5058
2
chr7B.!!$R2
5057
1
TraesCS7B01G365700
chr7A
661588144
661597158
9014
False
653.444444
1923
91.110556
18
4923
9
chr7A.!!$F1
4905
2
TraesCS7B01G365700
chr7D
572547940
572554829
6889
False
1169.600000
1816
96.447600
34
4123
5
chr7D.!!$F3
4089
3
TraesCS7B01G365700
chr7D
572562496
572563303
807
False
610.000000
610
81.091000
4135
4923
1
chr7D.!!$F1
788
4
TraesCS7B01G365700
chr4A
140975952
140979679
3727
False
637.000000
1705
85.742000
934
4064
4
chr4A.!!$F2
3130
5
TraesCS7B01G365700
chr4D
329137253
329140312
3059
True
821.333333
1663
87.695667
1092
4067
3
chr4D.!!$R1
2975
6
TraesCS7B01G365700
chr1B
135814422
135817509
3087
False
846.333333
1659
85.142000
1083
4059
3
chr1B.!!$F1
2976
7
TraesCS7B01G365700
chr4B
408979585
408984260
4675
True
619.750000
1230
87.881750
1092
4062
4
chr4B.!!$R1
2970
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
966
1124
0.756070
CTCTCCTAACTCCCCCGTCC
60.756
65.000
0.00
0.0
0.00
4.79
F
1188
1390
0.179018
AAGTCGAGCAACCTTTGGCT
60.179
50.000
0.00
0.0
44.48
4.75
F
1767
2240
1.652124
GCGCACATGCTCATTCTTTTG
59.348
47.619
0.30
0.0
39.32
2.44
F
1769
2242
2.659757
CGCACATGCTCATTCTTTTGTG
59.340
45.455
1.82
0.0
39.32
3.33
F
3691
11928
0.553819
TCTCCAGAGGGTCTAGAGGC
59.446
60.000
0.00
0.0
33.84
4.70
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2683
3861
2.238395
GGGAGAAGAGGCATTCTGAACT
59.762
50.000
9.4
0.0
39.63
3.01
R
3164
11398
2.555199
CAGCAGTACCAGTAGGATTGC
58.445
52.381
0.0
0.0
38.42
3.56
R
3691
11928
0.667993
TTCAAAGCACGGAAAGCCTG
59.332
50.000
0.0
0.0
0.00
4.85
R
3695
11932
6.205784
TGTAAAGATTTCAAAGCACGGAAAG
58.794
36.000
0.0
0.0
36.55
2.62
R
4617
14018
0.036388
CCAGAAGGGCAGCGTTTAGA
60.036
55.000
0.0
0.0
0.00
2.10
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
413
425
1.716826
CCGTCCTACCTCTGACTCGC
61.717
65.000
0.00
0.00
0.00
5.03
583
595
3.192422
GCTTCAGTTCTGTCTCTGCTCTA
59.808
47.826
0.00
0.00
0.00
2.43
651
663
5.456822
GCTTGTGAATTTATTTCGGAGATGC
59.543
40.000
0.00
0.00
37.13
3.91
716
825
6.245408
AGATAAGTGCACAATGGAGGTTAAA
58.755
36.000
21.04
0.00
0.00
1.52
717
826
4.584327
AAGTGCACAATGGAGGTTAAAC
57.416
40.909
21.04
0.00
0.00
2.01
737
846
9.739786
GTTAAACATTTGCATAGCATTTGTAAC
57.260
29.630
7.46
6.36
38.76
2.50
799
908
9.205719
TCATACGCTGTGTAGTTTGTTTATTTA
57.794
29.630
7.21
0.00
36.25
1.40
929
1087
1.030457
GACTATCCGACCCGACACAT
58.970
55.000
0.00
0.00
0.00
3.21
954
1112
1.759445
GCCAATCTGAGTGCTCTCCTA
59.241
52.381
13.00
1.84
39.75
2.94
961
1119
1.116308
GAGTGCTCTCCTAACTCCCC
58.884
60.000
4.37
0.00
35.36
4.81
965
1123
1.393487
GCTCTCCTAACTCCCCCGTC
61.393
65.000
0.00
0.00
0.00
4.79
966
1124
0.756070
CTCTCCTAACTCCCCCGTCC
60.756
65.000
0.00
0.00
0.00
4.79
1002
1160
3.323403
GGTACTGATTCTCCCTCCTCATG
59.677
52.174
0.00
0.00
0.00
3.07
1036
1208
1.407618
CGATGATGACGGGAACTACCA
59.592
52.381
0.00
0.00
41.20
3.25
1144
1346
9.593134
GTAGTTCAATGAGTTATTCTGATGACT
57.407
33.333
0.00
0.00
35.06
3.41
1145
1347
8.489990
AGTTCAATGAGTTATTCTGATGACTG
57.510
34.615
0.00
0.00
32.76
3.51
1147
1349
6.950842
TCAATGAGTTATTCTGATGACTGGT
58.049
36.000
0.00
0.00
32.76
4.00
1148
1350
6.820152
TCAATGAGTTATTCTGATGACTGGTG
59.180
38.462
0.00
0.00
32.76
4.17
1149
1351
6.550938
ATGAGTTATTCTGATGACTGGTGA
57.449
37.500
0.00
0.00
32.76
4.02
1150
1352
5.724328
TGAGTTATTCTGATGACTGGTGAC
58.276
41.667
0.00
0.00
32.76
3.67
1151
1353
5.245977
TGAGTTATTCTGATGACTGGTGACA
59.754
40.000
0.00
0.00
32.76
3.58
1152
1354
6.070596
TGAGTTATTCTGATGACTGGTGACAT
60.071
38.462
0.00
0.00
41.51
3.06
1153
1355
6.111382
AGTTATTCTGATGACTGGTGACATG
58.889
40.000
0.00
0.00
41.51
3.21
1154
1356
2.391616
TCTGATGACTGGTGACATGC
57.608
50.000
0.00
0.00
41.51
4.06
1188
1390
0.179018
AAGTCGAGCAACCTTTGGCT
60.179
50.000
0.00
0.00
44.48
4.75
1283
1489
3.012518
CTCCAACACCCTGCTTCTAATG
58.987
50.000
0.00
0.00
0.00
1.90
1302
1508
9.691362
TTCTAATGCTTTCAAATTTCAACCTAC
57.309
29.630
0.00
0.00
0.00
3.18
1303
1509
9.077885
TCTAATGCTTTCAAATTTCAACCTACT
57.922
29.630
0.00
0.00
0.00
2.57
1403
1610
2.559440
CTCCAAGCAGGCTATCTGTTC
58.441
52.381
0.00
0.00
45.08
3.18
1642
1850
6.817641
GGCAGAGGTATCTCATCATTCATAAG
59.182
42.308
5.64
0.00
42.34
1.73
1645
1853
9.993454
CAGAGGTATCTCATCATTCATAAGAAA
57.007
33.333
5.64
0.00
42.34
2.52
1649
1857
8.386606
GGTATCTCATCATTCATAAGAAATCGC
58.613
37.037
0.00
0.00
37.29
4.58
1650
1858
9.149225
GTATCTCATCATTCATAAGAAATCGCT
57.851
33.333
0.00
0.00
37.29
4.93
1655
1863
9.276590
TCATCATTCATAAGAAATCGCTATTGT
57.723
29.630
0.00
0.00
37.29
2.71
1656
1864
9.326339
CATCATTCATAAGAAATCGCTATTGTG
57.674
33.333
0.00
0.00
37.29
3.33
1657
1865
8.437360
TCATTCATAAGAAATCGCTATTGTGT
57.563
30.769
0.00
0.00
37.29
3.72
1661
1869
8.942338
TCATAAGAAATCGCTATTGTGTTACT
57.058
30.769
0.00
0.00
0.00
2.24
1767
2240
1.652124
GCGCACATGCTCATTCTTTTG
59.348
47.619
0.30
0.00
39.32
2.44
1769
2242
2.659757
CGCACATGCTCATTCTTTTGTG
59.340
45.455
1.82
0.00
39.32
3.33
1771
2244
3.427528
GCACATGCTCATTCTTTTGTGTG
59.572
43.478
0.00
0.00
37.40
3.82
2588
3766
9.179909
TGAATTGTTTTGTACAGAAACTAAGGA
57.820
29.630
22.55
9.17
38.19
3.36
2683
3861
6.073276
CCAAATGTGACATTTCTCGTCTACAA
60.073
38.462
19.77
0.00
34.37
2.41
3164
11398
7.161773
ACATCATATTCTTTTGTTCACCCAG
57.838
36.000
0.00
0.00
0.00
4.45
3246
11480
6.037830
CGAAGGACAACGGTTCCATAATATTT
59.962
38.462
0.00
0.00
0.00
1.40
3388
11622
8.850454
TTTGAAATTTCTAAAGAGTTTCCACG
57.150
30.769
18.64
0.00
33.44
4.94
3427
11664
8.246180
CCAGTGTTCTGAGCATTAACAAATTAT
58.754
33.333
0.00
0.00
43.76
1.28
3465
11702
8.668510
ATGACAAACTAGACCTGCATAATTAG
57.331
34.615
0.00
0.00
0.00
1.73
3691
11928
0.553819
TCTCCAGAGGGTCTAGAGGC
59.446
60.000
0.00
0.00
33.84
4.70
3695
11932
1.075600
AGAGGGTCTAGAGGCAGGC
60.076
63.158
0.00
0.00
0.00
4.85
3841
12085
2.676342
GTTTACATCGCTCGGGTTCAAT
59.324
45.455
0.00
0.00
0.00
2.57
3855
12099
2.423538
GGTTCAATGTCTATGGTGCCAC
59.576
50.000
0.00
0.00
0.00
5.01
3910
12154
3.312697
GCCGTAATTCTTGGGATGTCTTC
59.687
47.826
0.00
0.00
0.00
2.87
3969
12213
1.273495
TGGCATTGGATTTGGGCCTAA
60.273
47.619
4.53
3.27
44.85
2.69
4036
12280
1.730501
TCATTGAAGCTGCGAGAAGG
58.269
50.000
0.00
0.00
0.00
3.46
4069
12313
8.297426
CAGCTATACAAATGAGCATTGATTCAT
58.703
33.333
0.00
0.00
38.73
2.57
4070
12314
8.512956
AGCTATACAAATGAGCATTGATTCATC
58.487
33.333
0.00
0.00
38.73
2.92
4071
12315
8.294577
GCTATACAAATGAGCATTGATTCATCA
58.705
33.333
0.00
0.00
36.20
3.07
4091
12335
1.187087
ACCCGTGTCATTCTCTCCTC
58.813
55.000
0.00
0.00
0.00
3.71
4123
12367
2.203669
TGCCCAGCAGCATTTGGT
60.204
55.556
0.00
0.00
38.00
3.67
4129
12373
2.344535
AGCAGCATTTGGTGTCACC
58.655
52.632
15.64
15.64
44.70
4.02
4140
13496
0.173708
GGTGTCACCATCGAGAGGAC
59.826
60.000
17.59
7.81
38.42
3.85
4174
13530
1.804151
TCAATGCTAGCAACGACCAAC
59.196
47.619
23.54
0.00
0.00
3.77
4176
13532
1.442769
ATGCTAGCAACGACCAACTG
58.557
50.000
23.54
0.00
0.00
3.16
4184
13540
2.226437
GCAACGACCAACTGAATCATGT
59.774
45.455
0.00
0.00
0.00
3.21
4199
13555
3.829886
TCATGTCGTGGCATTCTTTTC
57.170
42.857
0.00
0.00
0.00
2.29
4204
13560
4.606961
TGTCGTGGCATTCTTTTCTTTTC
58.393
39.130
0.00
0.00
0.00
2.29
4208
13564
6.255670
GTCGTGGCATTCTTTTCTTTTCTTTT
59.744
34.615
0.00
0.00
0.00
2.27
4209
13565
6.816140
TCGTGGCATTCTTTTCTTTTCTTTTT
59.184
30.769
0.00
0.00
0.00
1.94
4306
13664
4.647564
ACATTGAGATTTCTGGACCACT
57.352
40.909
0.00
0.00
0.00
4.00
4320
13678
1.612463
GACCACTGAACGACCACTACT
59.388
52.381
0.00
0.00
0.00
2.57
4321
13679
2.035576
GACCACTGAACGACCACTACTT
59.964
50.000
0.00
0.00
0.00
2.24
4325
13694
2.102588
ACTGAACGACCACTACTTTGCT
59.897
45.455
0.00
0.00
0.00
3.91
4327
13707
1.194772
GAACGACCACTACTTTGCTGC
59.805
52.381
0.00
0.00
0.00
5.25
4329
13709
1.616865
ACGACCACTACTTTGCTGCTA
59.383
47.619
0.00
0.00
0.00
3.49
4333
13713
1.594862
CCACTACTTTGCTGCTATCGC
59.405
52.381
0.00
0.00
0.00
4.58
4338
13718
0.875908
CTTTGCTGCTATCGCCGCTA
60.876
55.000
7.14
0.00
45.29
4.26
4340
13720
2.027605
GCTGCTATCGCCGCTACA
59.972
61.111
0.00
0.00
42.29
2.74
4344
13724
1.200252
CTGCTATCGCCGCTACACTAT
59.800
52.381
0.00
0.00
34.43
2.12
4345
13725
1.199327
TGCTATCGCCGCTACACTATC
59.801
52.381
0.00
0.00
34.43
2.08
4350
13730
1.504647
CGCCGCTACACTATCGGAGA
61.505
60.000
3.91
0.00
45.53
3.71
4352
13732
1.306148
CCGCTACACTATCGGAGACA
58.694
55.000
0.00
0.00
45.53
3.41
4356
13736
1.609555
CTACACTATCGGAGACAGCCC
59.390
57.143
0.00
0.00
42.51
5.19
4383
13763
5.596268
TTGTCGATGACAATTGAGAAGTG
57.404
39.130
13.59
0.00
45.88
3.16
4384
13764
3.433274
TGTCGATGACAATTGAGAAGTGC
59.567
43.478
13.59
0.00
39.78
4.40
4389
13770
4.077300
TGACAATTGAGAAGTGCTCTGT
57.923
40.909
13.59
0.00
44.27
3.41
4397
13778
1.344942
GAAGTGCTCTGTACGTGCCG
61.345
60.000
0.00
0.00
0.00
5.69
4408
13789
1.940883
TACGTGCCGCTAAGGACCAG
61.941
60.000
0.00
0.00
45.00
4.00
4415
13796
2.432300
GCTAAGGACCAGCGCCCTA
61.432
63.158
2.29
0.00
31.36
3.53
4418
13799
0.105658
TAAGGACCAGCGCCCTAGAT
60.106
55.000
2.29
0.00
31.36
1.98
4435
13817
1.390123
AGATCGCAATTGTCGTCGTTG
59.610
47.619
17.57
0.00
0.00
4.10
4448
13830
2.407026
TCGTCGTTGAACACATGAATCG
59.593
45.455
0.00
0.00
0.00
3.34
4475
13857
4.897670
TGAAGTGCCTGATATCAGATCTCA
59.102
41.667
30.40
20.74
46.59
3.27
4478
13860
2.560105
TGCCTGATATCAGATCTCACCG
59.440
50.000
30.40
14.08
46.59
4.94
4513
13895
2.169769
ACGAGAAACTCAAACCTCACCA
59.830
45.455
0.00
0.00
0.00
4.17
4520
13902
2.176798
ACTCAAACCTCACCATCCCAAA
59.823
45.455
0.00
0.00
0.00
3.28
4527
13909
2.356535
CCTCACCATCCCAAAGAGAAGG
60.357
54.545
0.00
0.00
0.00
3.46
4529
13912
1.075601
ACCATCCCAAAGAGAAGGCA
58.924
50.000
0.00
0.00
0.00
4.75
4530
13913
1.642762
ACCATCCCAAAGAGAAGGCAT
59.357
47.619
0.00
0.00
0.00
4.40
4539
13922
5.188434
CCAAAGAGAAGGCATGAATCTACA
58.812
41.667
0.00
0.00
0.00
2.74
4540
13923
5.649395
CCAAAGAGAAGGCATGAATCTACAA
59.351
40.000
0.00
0.00
0.00
2.41
4550
13933
3.784701
TGAATCTACAACGGAGCTCTC
57.215
47.619
14.64
2.76
0.00
3.20
4557
13940
4.544001
ACGGAGCTCTCTCGGTAG
57.456
61.111
14.64
0.00
46.73
3.18
4560
13958
0.871722
CGGAGCTCTCTCGGTAGATG
59.128
60.000
14.64
0.00
40.26
2.90
4578
13976
3.194542
AGATGAACAAACTCGAGGAGGAG
59.805
47.826
18.41
4.31
39.97
3.69
4580
13978
2.296471
TGAACAAACTCGAGGAGGAGTC
59.704
50.000
18.41
7.29
46.21
3.36
4581
13979
1.258676
ACAAACTCGAGGAGGAGTCC
58.741
55.000
18.41
0.00
46.21
3.85
4600
14001
2.363038
TCCGAAAGACCAACTCGAAGAA
59.637
45.455
0.00
0.00
34.09
2.52
4653
14054
5.281558
CCTTCTGGGGACTAAAAACCCTAAT
60.282
44.000
0.00
0.00
44.97
1.73
4659
14060
7.177184
TGGGGACTAAAAACCCTAATCTAAAC
58.823
38.462
0.00
0.00
44.97
2.01
4660
14061
6.604795
GGGGACTAAAAACCCTAATCTAAACC
59.395
42.308
0.00
0.00
44.97
3.27
4674
14075
1.555075
CTAAACCACTAGCTGGAGCCA
59.445
52.381
15.59
0.00
43.95
4.75
4695
14096
2.273619
AGGCACCAGAATTCTCCTCTT
58.726
47.619
4.57
0.00
0.00
2.85
4696
14097
2.646798
AGGCACCAGAATTCTCCTCTTT
59.353
45.455
4.57
0.00
0.00
2.52
4746
14147
1.272147
GGGAGGTGAATCCACAAGCTT
60.272
52.381
0.00
0.00
44.93
3.74
4750
14151
0.961019
GTGAATCCACAAGCTTGCCA
59.039
50.000
26.27
10.58
42.72
4.92
4754
14155
0.178981
ATCCACAAGCTTGCCAGTGT
60.179
50.000
26.27
3.15
0.00
3.55
4757
14158
1.134729
CCACAAGCTTGCCAGTGTTTT
60.135
47.619
26.27
0.04
0.00
2.43
4789
14190
2.649816
AGGAAAGATGCAACCCTAACCT
59.350
45.455
0.00
0.00
0.00
3.50
4792
14193
1.668826
AGATGCAACCCTAACCTCCA
58.331
50.000
0.00
0.00
0.00
3.86
4793
14194
1.282157
AGATGCAACCCTAACCTCCAC
59.718
52.381
0.00
0.00
0.00
4.02
4794
14195
0.331616
ATGCAACCCTAACCTCCACC
59.668
55.000
0.00
0.00
0.00
4.61
4829
14230
4.647654
GTGAACTTCACGCCGAGA
57.352
55.556
6.16
0.00
37.67
4.04
4835
14236
0.317160
ACTTCACGCCGAGACATTCA
59.683
50.000
0.00
0.00
0.00
2.57
4839
14240
0.163788
CACGCCGAGACATTCAACAC
59.836
55.000
0.00
0.00
0.00
3.32
4844
14245
1.670087
CCGAGACATTCAACACGCTCT
60.670
52.381
0.00
0.00
0.00
4.09
4859
14260
1.000385
CGCTCTTTGGTTTGGATGCAA
60.000
47.619
0.00
0.00
0.00
4.08
4865
14266
6.372381
GCTCTTTGGTTTGGATGCAATAAATT
59.628
34.615
0.00
0.00
0.00
1.82
4867
14268
6.654161
TCTTTGGTTTGGATGCAATAAATTGG
59.346
34.615
0.00
0.00
38.21
3.16
4923
14324
4.894784
TGAAGGATGTTCTACAAGACCAC
58.105
43.478
0.00
0.00
0.00
4.16
4924
14325
4.346709
TGAAGGATGTTCTACAAGACCACA
59.653
41.667
0.00
0.00
0.00
4.17
4925
14326
4.543590
AGGATGTTCTACAAGACCACAG
57.456
45.455
0.00
0.00
0.00
3.66
4926
14327
3.904339
AGGATGTTCTACAAGACCACAGT
59.096
43.478
0.00
0.00
0.00
3.55
4927
14328
4.021016
AGGATGTTCTACAAGACCACAGTC
60.021
45.833
0.00
0.00
43.89
3.51
4935
14336
4.192000
GACCACAGTCTGCATCCG
57.808
61.111
0.00
0.00
40.10
4.18
4936
14337
1.293498
GACCACAGTCTGCATCCGT
59.707
57.895
0.00
0.00
40.10
4.69
4937
14338
0.320771
GACCACAGTCTGCATCCGTT
60.321
55.000
0.00
0.00
40.10
4.44
4938
14339
0.320771
ACCACAGTCTGCATCCGTTC
60.321
55.000
0.00
0.00
0.00
3.95
4939
14340
1.021390
CCACAGTCTGCATCCGTTCC
61.021
60.000
0.00
0.00
0.00
3.62
4940
14341
0.036952
CACAGTCTGCATCCGTTCCT
60.037
55.000
0.00
0.00
0.00
3.36
4941
14342
1.204704
CACAGTCTGCATCCGTTCCTA
59.795
52.381
0.00
0.00
0.00
2.94
4942
14343
1.478510
ACAGTCTGCATCCGTTCCTAG
59.521
52.381
0.00
0.00
0.00
3.02
4943
14344
1.751351
CAGTCTGCATCCGTTCCTAGA
59.249
52.381
0.00
0.00
0.00
2.43
4944
14345
1.751924
AGTCTGCATCCGTTCCTAGAC
59.248
52.381
0.00
0.00
35.88
2.59
4945
14346
1.751924
GTCTGCATCCGTTCCTAGACT
59.248
52.381
0.00
0.00
33.58
3.24
4946
14347
2.950309
GTCTGCATCCGTTCCTAGACTA
59.050
50.000
0.00
0.00
33.58
2.59
4947
14348
2.950309
TCTGCATCCGTTCCTAGACTAC
59.050
50.000
0.00
0.00
0.00
2.73
4948
14349
2.029623
TGCATCCGTTCCTAGACTACC
58.970
52.381
0.00
0.00
0.00
3.18
4949
14350
2.308690
GCATCCGTTCCTAGACTACCT
58.691
52.381
0.00
0.00
0.00
3.08
4950
14351
2.293955
GCATCCGTTCCTAGACTACCTC
59.706
54.545
0.00
0.00
0.00
3.85
4951
14352
2.725221
TCCGTTCCTAGACTACCTCC
57.275
55.000
0.00
0.00
0.00
4.30
4952
14353
1.213926
TCCGTTCCTAGACTACCTCCC
59.786
57.143
0.00
0.00
0.00
4.30
4953
14354
1.064166
CCGTTCCTAGACTACCTCCCA
60.064
57.143
0.00
0.00
0.00
4.37
4954
14355
2.622452
CCGTTCCTAGACTACCTCCCAA
60.622
54.545
0.00
0.00
0.00
4.12
4955
14356
2.688958
CGTTCCTAGACTACCTCCCAAG
59.311
54.545
0.00
0.00
0.00
3.61
4956
14357
2.431419
GTTCCTAGACTACCTCCCAAGC
59.569
54.545
0.00
0.00
0.00
4.01
4957
14358
1.930914
TCCTAGACTACCTCCCAAGCT
59.069
52.381
0.00
0.00
0.00
3.74
4958
14359
2.315155
TCCTAGACTACCTCCCAAGCTT
59.685
50.000
0.00
0.00
0.00
3.74
4959
14360
3.108376
CCTAGACTACCTCCCAAGCTTT
58.892
50.000
0.00
0.00
0.00
3.51
4960
14361
3.118592
CCTAGACTACCTCCCAAGCTTTG
60.119
52.174
0.00
0.00
0.00
2.77
4961
14362
2.339769
AGACTACCTCCCAAGCTTTGT
58.660
47.619
0.00
0.00
0.00
2.83
4962
14363
2.039084
AGACTACCTCCCAAGCTTTGTG
59.961
50.000
0.00
0.00
0.00
3.33
4963
14364
1.774856
ACTACCTCCCAAGCTTTGTGT
59.225
47.619
0.00
0.00
0.00
3.72
4964
14365
2.224548
ACTACCTCCCAAGCTTTGTGTC
60.225
50.000
0.00
0.00
0.00
3.67
4965
14366
0.535102
ACCTCCCAAGCTTTGTGTCG
60.535
55.000
0.00
0.00
0.00
4.35
4966
14367
0.250295
CCTCCCAAGCTTTGTGTCGA
60.250
55.000
0.00
0.00
0.00
4.20
4967
14368
0.868406
CTCCCAAGCTTTGTGTCGAC
59.132
55.000
9.11
9.11
0.00
4.20
4968
14369
0.878523
TCCCAAGCTTTGTGTCGACG
60.879
55.000
11.62
0.00
0.00
5.12
4969
14370
1.082756
CCAAGCTTTGTGTCGACGC
60.083
57.895
22.00
22.00
0.00
5.19
4970
14371
1.498865
CCAAGCTTTGTGTCGACGCT
61.499
55.000
27.76
18.37
0.00
5.07
4971
14372
0.383491
CAAGCTTTGTGTCGACGCTG
60.383
55.000
27.76
18.51
0.00
5.18
4972
14373
0.529773
AAGCTTTGTGTCGACGCTGA
60.530
50.000
27.76
14.92
0.00
4.26
4973
14374
0.529773
AGCTTTGTGTCGACGCTGAA
60.530
50.000
27.76
20.35
0.00
3.02
4974
14375
0.111089
GCTTTGTGTCGACGCTGAAG
60.111
55.000
27.76
27.24
0.00
3.02
4975
14376
1.487482
CTTTGTGTCGACGCTGAAGA
58.513
50.000
27.76
6.33
0.00
2.87
4976
14377
1.858458
CTTTGTGTCGACGCTGAAGAA
59.142
47.619
27.76
12.13
0.00
2.52
4977
14378
1.487482
TTGTGTCGACGCTGAAGAAG
58.513
50.000
27.76
0.00
0.00
2.85
4990
14391
2.414481
CTGAAGAAGCCTCATCACAACG
59.586
50.000
0.00
0.00
0.00
4.10
4991
14392
2.037121
TGAAGAAGCCTCATCACAACGA
59.963
45.455
0.00
0.00
0.00
3.85
4992
14393
3.265791
GAAGAAGCCTCATCACAACGAT
58.734
45.455
0.00
0.00
33.27
3.73
4999
14400
3.465990
CATCACAACGATGGAGCCT
57.534
52.632
0.00
0.00
46.73
4.58
5000
14401
2.602257
CATCACAACGATGGAGCCTA
57.398
50.000
0.00
0.00
46.73
3.93
5001
14402
2.905075
CATCACAACGATGGAGCCTAA
58.095
47.619
0.00
0.00
46.73
2.69
5002
14403
3.470709
CATCACAACGATGGAGCCTAAT
58.529
45.455
0.00
0.00
46.73
1.73
5003
14404
2.905075
TCACAACGATGGAGCCTAATG
58.095
47.619
0.00
0.00
0.00
1.90
5004
14405
2.499693
TCACAACGATGGAGCCTAATGA
59.500
45.455
0.00
0.00
0.00
2.57
5005
14406
2.609459
CACAACGATGGAGCCTAATGAC
59.391
50.000
0.00
0.00
0.00
3.06
5006
14407
2.236146
ACAACGATGGAGCCTAATGACA
59.764
45.455
0.00
0.00
0.00
3.58
5007
14408
3.118261
ACAACGATGGAGCCTAATGACAT
60.118
43.478
0.00
0.00
0.00
3.06
5008
14409
4.100963
ACAACGATGGAGCCTAATGACATA
59.899
41.667
0.00
0.00
0.00
2.29
5009
14410
4.955811
ACGATGGAGCCTAATGACATAA
57.044
40.909
0.00
0.00
0.00
1.90
5010
14411
4.887748
ACGATGGAGCCTAATGACATAAG
58.112
43.478
0.00
0.00
0.00
1.73
5011
14412
4.345257
ACGATGGAGCCTAATGACATAAGT
59.655
41.667
0.00
0.00
0.00
2.24
5012
14413
4.926238
CGATGGAGCCTAATGACATAAGTC
59.074
45.833
0.00
0.00
45.19
3.01
5013
14414
4.689612
TGGAGCCTAATGACATAAGTCC
57.310
45.455
0.00
0.00
44.33
3.85
5014
14415
4.037222
TGGAGCCTAATGACATAAGTCCA
58.963
43.478
0.00
0.00
44.33
4.02
5015
14416
4.141711
TGGAGCCTAATGACATAAGTCCAC
60.142
45.833
0.00
0.00
44.33
4.02
5016
14417
4.381411
GAGCCTAATGACATAAGTCCACC
58.619
47.826
0.00
0.00
44.33
4.61
5017
14418
3.780294
AGCCTAATGACATAAGTCCACCA
59.220
43.478
0.00
0.00
44.33
4.17
5018
14419
4.413520
AGCCTAATGACATAAGTCCACCAT
59.586
41.667
0.00
0.00
44.33
3.55
5019
14420
5.606749
AGCCTAATGACATAAGTCCACCATA
59.393
40.000
0.00
0.00
44.33
2.74
5020
14421
6.273260
AGCCTAATGACATAAGTCCACCATAT
59.727
38.462
0.00
0.00
44.33
1.78
5021
14422
6.372659
GCCTAATGACATAAGTCCACCATATG
59.627
42.308
0.00
0.00
44.33
1.78
5030
14431
3.672293
CACCATATGGATGCCGCC
58.328
61.111
28.77
0.00
38.94
6.13
5031
14432
2.032528
ACCATATGGATGCCGCCG
59.967
61.111
28.77
0.00
38.94
6.46
5032
14433
3.434319
CCATATGGATGCCGCCGC
61.434
66.667
17.49
0.00
37.39
6.53
5033
14434
3.434319
CATATGGATGCCGCCGCC
61.434
66.667
0.00
0.00
0.00
6.13
5034
14435
3.952508
ATATGGATGCCGCCGCCA
61.953
61.111
4.01
4.01
35.91
5.69
5035
14436
4.927782
TATGGATGCCGCCGCCAC
62.928
66.667
3.64
0.00
33.93
5.01
5043
14444
3.679738
CCGCCGCCACACCATTTT
61.680
61.111
0.00
0.00
0.00
1.82
5044
14445
2.126502
CGCCGCCACACCATTTTC
60.127
61.111
0.00
0.00
0.00
2.29
5045
14446
2.126502
GCCGCCACACCATTTTCG
60.127
61.111
0.00
0.00
0.00
3.46
5046
14447
2.126502
CCGCCACACCATTTTCGC
60.127
61.111
0.00
0.00
0.00
4.70
5047
14448
2.625823
CCGCCACACCATTTTCGCT
61.626
57.895
0.00
0.00
0.00
4.93
5048
14449
1.285641
CGCCACACCATTTTCGCTT
59.714
52.632
0.00
0.00
0.00
4.68
5049
14450
1.003262
CGCCACACCATTTTCGCTTG
61.003
55.000
0.00
0.00
0.00
4.01
5050
14451
0.313672
GCCACACCATTTTCGCTTGA
59.686
50.000
0.00
0.00
0.00
3.02
5051
14452
1.269517
GCCACACCATTTTCGCTTGAA
60.270
47.619
0.00
0.00
0.00
2.69
5052
14453
2.393764
CCACACCATTTTCGCTTGAAC
58.606
47.619
0.00
0.00
0.00
3.18
5053
14454
2.223688
CCACACCATTTTCGCTTGAACA
60.224
45.455
0.00
0.00
0.00
3.18
5054
14455
3.044986
CACACCATTTTCGCTTGAACAG
58.955
45.455
0.00
0.00
0.00
3.16
5055
14456
2.948979
ACACCATTTTCGCTTGAACAGA
59.051
40.909
0.00
0.00
0.00
3.41
5056
14457
3.243068
ACACCATTTTCGCTTGAACAGAC
60.243
43.478
0.00
0.00
0.00
3.51
5057
14458
3.003689
CACCATTTTCGCTTGAACAGACT
59.996
43.478
0.00
0.00
0.00
3.24
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
372
383
2.034048
GCGGAGAAGATGGGGAGGAC
62.034
65.000
0.00
0.00
0.00
3.85
583
595
2.715046
TGAAAAGCATCGAATCTGGCT
58.285
42.857
0.00
0.00
38.45
4.75
665
677
6.183360
CCTCAAATTTATCCATTGCAAGCAAC
60.183
38.462
9.97
0.00
38.88
4.17
716
825
9.874205
AATAAGTTACAAATGCTATGCAAATGT
57.126
25.926
14.56
14.56
43.62
2.71
799
908
2.106683
GGCTCGCCAACGCACTAAT
61.107
57.895
2.41
0.00
39.84
1.73
904
1061
1.821258
GGGTCGGATAGTCCACCAC
59.179
63.158
14.96
2.21
38.58
4.16
929
1087
1.219124
GCACTCAGATTGGCCGAGA
59.781
57.895
11.11
0.00
0.00
4.04
961
1119
4.222847
GCTTAGCCCTCCGGACGG
62.223
72.222
14.64
14.64
0.00
4.79
965
1123
1.760875
TACCAGCTTAGCCCTCCGG
60.761
63.158
0.00
0.00
0.00
5.14
966
1124
1.043673
AGTACCAGCTTAGCCCTCCG
61.044
60.000
0.00
0.00
0.00
4.63
1002
1160
4.148825
ATCGGCGGCAGTGAGTCC
62.149
66.667
10.53
0.00
0.00
3.85
1036
1208
3.491598
CTTTGGTGGCGGGTGAGGT
62.492
63.158
0.00
0.00
0.00
3.85
1144
1346
1.180456
CCCTGCAAAGCATGTCACCA
61.180
55.000
0.00
0.00
38.13
4.17
1145
1347
1.588082
CCCTGCAAAGCATGTCACC
59.412
57.895
0.00
0.00
38.13
4.02
1147
1349
1.531128
TGCCCTGCAAAGCATGTCA
60.531
52.632
6.22
0.00
38.13
3.58
1148
1350
3.368822
TGCCCTGCAAAGCATGTC
58.631
55.556
6.22
0.00
38.13
3.06
1152
1354
1.588824
CTTCGATGCCCTGCAAAGCA
61.589
55.000
12.28
12.28
43.62
3.91
1153
1355
1.138247
CTTCGATGCCCTGCAAAGC
59.862
57.895
0.67
0.67
43.62
3.51
1154
1356
0.449388
GACTTCGATGCCCTGCAAAG
59.551
55.000
0.00
0.00
43.62
2.77
1188
1390
4.069232
CGGGCTGCCTTCTCGTCA
62.069
66.667
19.68
0.00
0.00
4.35
1200
1402
0.248289
ACAGCGTACATTAACGGGCT
59.752
50.000
0.00
0.00
43.06
5.19
1283
1489
9.000486
ACTACTAGTAGGTTGAAATTTGAAAGC
58.000
33.333
29.05
0.00
37.49
3.51
1403
1610
2.158813
ACGGCACAATTATACCTCAGGG
60.159
50.000
0.00
0.00
38.88
4.45
1642
1850
9.474249
GTCTAAAAGTAACACAATAGCGATTTC
57.526
33.333
0.00
0.00
0.00
2.17
1645
1853
7.328737
AGGTCTAAAAGTAACACAATAGCGAT
58.671
34.615
0.00
0.00
0.00
4.58
1646
1854
6.694447
AGGTCTAAAAGTAACACAATAGCGA
58.306
36.000
0.00
0.00
0.00
4.93
1647
1855
6.963049
AGGTCTAAAAGTAACACAATAGCG
57.037
37.500
0.00
0.00
0.00
4.26
1649
1857
7.390718
AGCCAAGGTCTAAAAGTAACACAATAG
59.609
37.037
0.00
0.00
0.00
1.73
1650
1858
7.174253
CAGCCAAGGTCTAAAAGTAACACAATA
59.826
37.037
0.00
0.00
0.00
1.90
1655
1863
5.298989
TCAGCCAAGGTCTAAAAGTAACA
57.701
39.130
0.00
0.00
0.00
2.41
1656
1864
6.174049
AGATCAGCCAAGGTCTAAAAGTAAC
58.826
40.000
0.00
0.00
0.00
2.50
1657
1865
6.013725
TGAGATCAGCCAAGGTCTAAAAGTAA
60.014
38.462
0.00
0.00
0.00
2.24
1659
1867
4.287067
TGAGATCAGCCAAGGTCTAAAAGT
59.713
41.667
0.00
0.00
0.00
2.66
1660
1868
4.836825
TGAGATCAGCCAAGGTCTAAAAG
58.163
43.478
0.00
0.00
0.00
2.27
1661
1869
4.323792
CCTGAGATCAGCCAAGGTCTAAAA
60.324
45.833
4.23
0.00
42.47
1.52
2482
3044
9.807649
GAGCCAATCAAATATTTTTAGTGATGT
57.192
29.630
0.00
0.00
0.00
3.06
2683
3861
2.238395
GGGAGAAGAGGCATTCTGAACT
59.762
50.000
9.40
0.00
39.63
3.01
3164
11398
2.555199
CAGCAGTACCAGTAGGATTGC
58.445
52.381
0.00
0.00
38.42
3.56
3246
11480
6.545298
TGTACATGGCATAAGCACAATCATAA
59.455
34.615
0.00
0.00
44.61
1.90
3388
11622
4.682860
CAGAACACTGGCATCAAATGTTTC
59.317
41.667
0.00
0.00
34.40
2.78
3393
11627
2.490903
GCTCAGAACACTGGCATCAAAT
59.509
45.455
0.00
0.00
32.38
2.32
3398
11632
2.211250
AATGCTCAGAACACTGGCAT
57.789
45.000
15.04
15.04
43.32
4.40
3465
11702
3.057104
GCAACCTACACATTACCAAACCC
60.057
47.826
0.00
0.00
0.00
4.11
3691
11928
0.667993
TTCAAAGCACGGAAAGCCTG
59.332
50.000
0.00
0.00
0.00
4.85
3695
11932
6.205784
TGTAAAGATTTCAAAGCACGGAAAG
58.794
36.000
0.00
0.00
36.55
2.62
3776
12020
5.677319
TTCTCCTTGTAGAATCCGACAAT
57.323
39.130
0.00
0.00
37.30
2.71
3841
12085
2.011548
GCATTCGTGGCACCATAGACA
61.012
52.381
12.86
0.00
0.00
3.41
3855
12099
1.586422
CCACACATAGGGAGCATTCG
58.414
55.000
0.00
0.00
0.00
3.34
3910
12154
3.264666
CTTCTCAAGGATCTCGGCG
57.735
57.895
0.00
0.00
0.00
6.46
3969
12213
3.883744
CTCACAAAGCCCTCGCCGT
62.884
63.158
0.00
0.00
34.57
5.68
4069
12313
1.275291
GGAGAGAATGACACGGGTTGA
59.725
52.381
0.00
0.00
0.00
3.18
4070
12314
1.276421
AGGAGAGAATGACACGGGTTG
59.724
52.381
0.00
0.00
0.00
3.77
4071
12315
1.550976
GAGGAGAGAATGACACGGGTT
59.449
52.381
0.00
0.00
0.00
4.11
4091
12335
1.365999
GGCACTTTTTGGTTCCCCG
59.634
57.895
0.00
0.00
0.00
5.73
4102
12346
0.034337
CAAATGCTGCTGGGCACTTT
59.966
50.000
0.00
3.06
45.36
2.66
4106
12350
2.203669
ACCAAATGCTGCTGGGCA
60.204
55.556
10.67
2.54
46.63
5.36
4124
12368
0.099082
GTCGTCCTCTCGATGGTGAC
59.901
60.000
12.69
12.69
41.78
3.67
4125
12369
1.366854
CGTCGTCCTCTCGATGGTGA
61.367
60.000
4.79
2.59
41.37
4.02
4126
12370
1.062685
CGTCGTCCTCTCGATGGTG
59.937
63.158
4.79
0.61
41.37
4.17
4127
12371
3.499050
CGTCGTCCTCTCGATGGT
58.501
61.111
4.79
0.00
41.37
3.55
4129
12373
0.170561
AAACCGTCGTCCTCTCGATG
59.829
55.000
0.00
0.00
43.66
3.84
4130
12374
1.742761
TAAACCGTCGTCCTCTCGAT
58.257
50.000
0.00
0.00
41.78
3.59
4131
12375
1.742761
ATAAACCGTCGTCCTCTCGA
58.257
50.000
0.00
0.00
37.51
4.04
4132
12376
2.159476
TGAATAAACCGTCGTCCTCTCG
60.159
50.000
0.00
0.00
0.00
4.04
4140
13496
4.536364
AGCATTGATGAATAAACCGTCG
57.464
40.909
0.00
0.00
0.00
5.12
4174
13530
2.941064
AGAATGCCACGACATGATTCAG
59.059
45.455
0.00
0.00
28.32
3.02
4176
13532
4.361451
AAAGAATGCCACGACATGATTC
57.639
40.909
0.00
0.00
0.00
2.52
4184
13540
5.514274
AAGAAAAGAAAAGAATGCCACGA
57.486
34.783
0.00
0.00
0.00
4.35
4215
13571
8.181904
TCAATAGTTCTGGATGCTTTCTTTTT
57.818
30.769
0.00
0.00
0.00
1.94
4216
13572
7.765695
TCAATAGTTCTGGATGCTTTCTTTT
57.234
32.000
0.00
0.00
0.00
2.27
4217
13573
7.765695
TTCAATAGTTCTGGATGCTTTCTTT
57.234
32.000
0.00
0.00
0.00
2.52
4220
13576
8.084684
ACTTTTTCAATAGTTCTGGATGCTTTC
58.915
33.333
0.00
0.00
0.00
2.62
4289
13647
3.554960
CGTTCAGTGGTCCAGAAATCTCA
60.555
47.826
0.00
0.00
0.00
3.27
4293
13651
2.550208
GGTCGTTCAGTGGTCCAGAAAT
60.550
50.000
0.00
0.00
0.00
2.17
4295
13653
0.391597
GGTCGTTCAGTGGTCCAGAA
59.608
55.000
0.00
0.00
0.00
3.02
4306
13664
2.479837
CAGCAAAGTAGTGGTCGTTCA
58.520
47.619
0.00
0.00
0.00
3.18
4327
13707
2.160918
CGATAGTGTAGCGGCGATAG
57.839
55.000
12.98
0.00
33.31
2.08
4338
13718
2.506065
GGGCTGTCTCCGATAGTGT
58.494
57.895
0.00
0.00
0.00
3.55
4352
13732
4.473520
CATCGACAAGGCCGGGCT
62.474
66.667
27.45
27.45
0.00
5.19
4356
13736
4.277239
TTGTCATCGACAAGGCCG
57.723
55.556
5.47
0.00
45.88
6.13
4373
13753
3.579709
CACGTACAGAGCACTTCTCAAT
58.420
45.455
0.00
0.00
44.35
2.57
4375
13755
1.335964
GCACGTACAGAGCACTTCTCA
60.336
52.381
0.00
0.00
44.35
3.27
4377
13757
0.038159
GGCACGTACAGAGCACTTCT
60.038
55.000
0.00
0.00
38.23
2.85
4415
13796
1.390123
CAACGACGACAATTGCGATCT
59.610
47.619
22.87
6.47
0.00
2.75
4418
13799
1.071107
GTTCAACGACGACAATTGCGA
60.071
47.619
22.87
3.16
0.00
5.10
4423
13805
3.127589
TCATGTGTTCAACGACGACAAT
58.872
40.909
0.00
0.00
0.00
2.71
4425
13807
2.211353
TCATGTGTTCAACGACGACA
57.789
45.000
0.00
0.00
0.00
4.35
4435
13817
5.726138
GCACTTCAGATCGATTCATGTGTTC
60.726
44.000
0.00
0.00
0.00
3.18
4448
13830
5.465532
TCTGATATCAGGCACTTCAGATC
57.534
43.478
28.30
0.00
41.81
2.75
4490
13872
3.002348
GGTGAGGTTTGAGTTTCTCGTTG
59.998
47.826
0.00
0.00
32.35
4.10
4491
13873
3.203716
GGTGAGGTTTGAGTTTCTCGTT
58.796
45.455
0.00
0.00
32.35
3.85
4492
13874
2.169769
TGGTGAGGTTTGAGTTTCTCGT
59.830
45.455
0.00
0.00
32.35
4.18
4503
13885
2.716424
TCTCTTTGGGATGGTGAGGTTT
59.284
45.455
0.00
0.00
0.00
3.27
4513
13895
3.744940
TTCATGCCTTCTCTTTGGGAT
57.255
42.857
0.00
0.00
34.68
3.85
4520
13902
4.437239
CGTTGTAGATTCATGCCTTCTCT
58.563
43.478
0.00
0.00
0.00
3.10
4527
13909
2.541762
GAGCTCCGTTGTAGATTCATGC
59.458
50.000
0.87
0.00
0.00
4.06
4529
13912
3.957497
AGAGAGCTCCGTTGTAGATTCAT
59.043
43.478
10.93
0.00
0.00
2.57
4530
13913
3.357203
AGAGAGCTCCGTTGTAGATTCA
58.643
45.455
10.93
0.00
0.00
2.57
4539
13922
0.252479
TCTACCGAGAGAGCTCCGTT
59.748
55.000
10.93
0.00
37.91
4.44
4540
13923
0.470766
ATCTACCGAGAGAGCTCCGT
59.529
55.000
10.93
0.00
37.91
4.69
4550
13933
4.092771
TCGAGTTTGTTCATCTACCGAG
57.907
45.455
0.00
0.00
0.00
4.63
4556
13939
3.165875
TCCTCCTCGAGTTTGTTCATCT
58.834
45.455
12.31
0.00
0.00
2.90
4557
13940
3.056465
ACTCCTCCTCGAGTTTGTTCATC
60.056
47.826
12.31
0.00
40.23
2.92
4560
13958
2.352912
GGACTCCTCCTCGAGTTTGTTC
60.353
54.545
12.31
0.41
43.22
3.18
4578
13976
2.059541
CTTCGAGTTGGTCTTTCGGAC
58.940
52.381
0.00
0.00
43.79
4.79
4579
13977
1.958579
TCTTCGAGTTGGTCTTTCGGA
59.041
47.619
0.00
0.00
35.21
4.55
4580
13978
2.433868
TCTTCGAGTTGGTCTTTCGG
57.566
50.000
0.00
0.00
35.21
4.30
4581
13979
3.639538
TCTTCTTCGAGTTGGTCTTTCG
58.360
45.455
0.00
0.00
35.76
3.46
4582
13980
4.084276
GCTTCTTCTTCGAGTTGGTCTTTC
60.084
45.833
0.00
0.00
0.00
2.62
4584
13982
3.394719
GCTTCTTCTTCGAGTTGGTCTT
58.605
45.455
0.00
0.00
0.00
3.01
4585
13983
2.608261
CGCTTCTTCTTCGAGTTGGTCT
60.608
50.000
0.00
0.00
0.00
3.85
4586
13984
1.721926
CGCTTCTTCTTCGAGTTGGTC
59.278
52.381
0.00
0.00
0.00
4.02
4588
13986
0.440371
GCGCTTCTTCTTCGAGTTGG
59.560
55.000
0.00
0.00
0.00
3.77
4589
13987
0.440371
GGCGCTTCTTCTTCGAGTTG
59.560
55.000
7.64
0.00
0.00
3.16
4591
13989
1.444553
CGGCGCTTCTTCTTCGAGT
60.445
57.895
7.64
0.00
0.00
4.18
4592
13990
2.793322
GCGGCGCTTCTTCTTCGAG
61.793
63.158
26.86
0.00
0.00
4.04
4593
13991
2.809601
GCGGCGCTTCTTCTTCGA
60.810
61.111
26.86
0.00
0.00
3.71
4617
14018
0.036388
CCAGAAGGGCAGCGTTTAGA
60.036
55.000
0.00
0.00
0.00
2.10
4631
14032
5.554350
AGATTAGGGTTTTTAGTCCCCAGAA
59.446
40.000
0.00
0.00
44.40
3.02
4660
14061
1.451028
GCCTTGGCTCCAGCTAGTG
60.451
63.158
4.11
0.00
41.70
2.74
4674
14075
2.273619
AGAGGAGAATTCTGGTGCCTT
58.726
47.619
14.00
1.94
0.00
4.35
4682
14083
2.616510
CGGTGGCAAAGAGGAGAATTCT
60.617
50.000
7.95
7.95
0.00
2.40
4711
14112
3.655211
CCCCTCTGCCAGCCACTT
61.655
66.667
0.00
0.00
0.00
3.16
4732
14133
1.250328
CTGGCAAGCTTGTGGATTCA
58.750
50.000
26.55
14.06
0.00
2.57
4762
14163
3.966665
AGGGTTGCATCTTTCCTCAAAAA
59.033
39.130
0.00
0.00
0.00
1.94
4763
14164
3.575805
AGGGTTGCATCTTTCCTCAAAA
58.424
40.909
0.00
0.00
0.00
2.44
4764
14165
3.243359
AGGGTTGCATCTTTCCTCAAA
57.757
42.857
0.00
0.00
0.00
2.69
4765
14166
2.978156
AGGGTTGCATCTTTCCTCAA
57.022
45.000
0.00
0.00
0.00
3.02
4766
14167
3.561313
GGTTAGGGTTGCATCTTTCCTCA
60.561
47.826
0.00
0.00
0.00
3.86
4789
14190
1.850345
AGTGTTTCTTTCCCTGGTGGA
59.150
47.619
0.00
0.00
43.18
4.02
4792
14193
3.447229
CACAAAGTGTTTCTTTCCCTGGT
59.553
43.478
0.00
0.00
43.57
4.00
4793
14194
3.699038
TCACAAAGTGTTTCTTTCCCTGG
59.301
43.478
0.00
0.00
43.57
4.45
4794
14195
4.981806
TCACAAAGTGTTTCTTTCCCTG
57.018
40.909
0.00
0.00
43.57
4.45
4816
14217
0.317160
TGAATGTCTCGGCGTGAAGT
59.683
50.000
13.70
2.48
0.00
3.01
4822
14223
1.416049
CGTGTTGAATGTCTCGGCG
59.584
57.895
0.00
0.00
0.00
6.46
4829
14230
2.297701
ACCAAAGAGCGTGTTGAATGT
58.702
42.857
0.00
0.00
0.00
2.71
4835
14236
1.757682
TCCAAACCAAAGAGCGTGTT
58.242
45.000
0.00
0.00
0.00
3.32
4839
14240
0.597568
TGCATCCAAACCAAAGAGCG
59.402
50.000
0.00
0.00
0.00
5.03
4844
14245
6.302269
ACCAATTTATTGCATCCAAACCAAA
58.698
32.000
0.00
0.00
36.48
3.28
4859
14260
9.941325
TGAAATCACAATTTGCTACCAATTTAT
57.059
25.926
0.00
0.00
35.21
1.40
4865
14266
5.337410
CCCATGAAATCACAATTTGCTACCA
60.337
40.000
0.00
0.00
35.21
3.25
4867
14268
5.964758
TCCCATGAAATCACAATTTGCTAC
58.035
37.500
0.00
0.00
35.21
3.58
4923
14324
1.751351
TCTAGGAACGGATGCAGACTG
59.249
52.381
0.00
0.00
0.00
3.51
4924
14325
1.751924
GTCTAGGAACGGATGCAGACT
59.248
52.381
0.00
0.00
31.77
3.24
4925
14326
1.751924
AGTCTAGGAACGGATGCAGAC
59.248
52.381
0.00
0.00
34.07
3.51
4926
14327
2.145397
AGTCTAGGAACGGATGCAGA
57.855
50.000
0.00
0.00
0.00
4.26
4927
14328
2.034812
GGTAGTCTAGGAACGGATGCAG
59.965
54.545
0.00
0.00
0.00
4.41
4928
14329
2.029623
GGTAGTCTAGGAACGGATGCA
58.970
52.381
0.00
0.00
0.00
3.96
4929
14330
2.293955
GAGGTAGTCTAGGAACGGATGC
59.706
54.545
0.00
0.00
0.00
3.91
4930
14331
2.885894
GGAGGTAGTCTAGGAACGGATG
59.114
54.545
0.00
0.00
0.00
3.51
4931
14332
2.158490
GGGAGGTAGTCTAGGAACGGAT
60.158
54.545
0.00
0.00
0.00
4.18
4932
14333
1.213926
GGGAGGTAGTCTAGGAACGGA
59.786
57.143
0.00
0.00
0.00
4.69
4933
14334
1.064166
TGGGAGGTAGTCTAGGAACGG
60.064
57.143
0.00
0.00
0.00
4.44
4934
14335
2.431954
TGGGAGGTAGTCTAGGAACG
57.568
55.000
0.00
0.00
0.00
3.95
4935
14336
2.431419
GCTTGGGAGGTAGTCTAGGAAC
59.569
54.545
0.00
0.00
0.00
3.62
4936
14337
2.315155
AGCTTGGGAGGTAGTCTAGGAA
59.685
50.000
0.00
0.00
0.00
3.36
4937
14338
1.930914
AGCTTGGGAGGTAGTCTAGGA
59.069
52.381
0.00
0.00
0.00
2.94
4938
14339
2.463047
AGCTTGGGAGGTAGTCTAGG
57.537
55.000
0.00
0.00
0.00
3.02
4939
14340
3.515901
ACAAAGCTTGGGAGGTAGTCTAG
59.484
47.826
5.66
0.00
32.23
2.43
4940
14341
3.260884
CACAAAGCTTGGGAGGTAGTCTA
59.739
47.826
5.66
0.00
35.62
2.59
4941
14342
2.039084
CACAAAGCTTGGGAGGTAGTCT
59.961
50.000
5.66
0.00
35.62
3.24
4942
14343
2.224548
ACACAAAGCTTGGGAGGTAGTC
60.225
50.000
5.66
0.00
37.55
2.59
4943
14344
1.774856
ACACAAAGCTTGGGAGGTAGT
59.225
47.619
5.66
0.00
37.55
2.73
4944
14345
2.427506
GACACAAAGCTTGGGAGGTAG
58.572
52.381
5.66
0.00
37.55
3.18
4945
14346
1.270625
CGACACAAAGCTTGGGAGGTA
60.271
52.381
5.66
0.00
37.55
3.08
4946
14347
0.535102
CGACACAAAGCTTGGGAGGT
60.535
55.000
5.66
0.07
37.55
3.85
4947
14348
0.250295
TCGACACAAAGCTTGGGAGG
60.250
55.000
5.66
0.00
37.55
4.30
4948
14349
0.868406
GTCGACACAAAGCTTGGGAG
59.132
55.000
11.55
0.00
37.55
4.30
4949
14350
0.878523
CGTCGACACAAAGCTTGGGA
60.879
55.000
17.16
0.00
37.55
4.37
4950
14351
1.569493
CGTCGACACAAAGCTTGGG
59.431
57.895
17.16
1.04
40.79
4.12
4951
14352
1.082756
GCGTCGACACAAAGCTTGG
60.083
57.895
17.16
0.00
34.12
3.61
4952
14353
0.383491
CAGCGTCGACACAAAGCTTG
60.383
55.000
17.16
6.85
35.82
4.01
4953
14354
0.529773
TCAGCGTCGACACAAAGCTT
60.530
50.000
17.16
0.00
35.82
3.74
4954
14355
0.529773
TTCAGCGTCGACACAAAGCT
60.530
50.000
17.16
12.59
38.90
3.74
4955
14356
0.111089
CTTCAGCGTCGACACAAAGC
60.111
55.000
17.16
10.31
0.00
3.51
4956
14357
1.487482
TCTTCAGCGTCGACACAAAG
58.513
50.000
17.16
13.26
0.00
2.77
4957
14358
1.858458
CTTCTTCAGCGTCGACACAAA
59.142
47.619
17.16
3.95
0.00
2.83
4958
14359
1.487482
CTTCTTCAGCGTCGACACAA
58.513
50.000
17.16
1.00
0.00
3.33
4959
14360
0.939577
GCTTCTTCAGCGTCGACACA
60.940
55.000
17.16
0.00
39.29
3.72
4960
14361
1.775962
GCTTCTTCAGCGTCGACAC
59.224
57.895
17.16
5.80
39.29
3.67
4961
14362
4.245054
GCTTCTTCAGCGTCGACA
57.755
55.556
17.16
0.00
39.29
4.35
4969
14370
2.414481
CGTTGTGATGAGGCTTCTTCAG
59.586
50.000
13.76
0.48
37.94
3.02
4970
14371
2.037121
TCGTTGTGATGAGGCTTCTTCA
59.963
45.455
9.96
9.96
35.74
3.02
4971
14372
2.688507
TCGTTGTGATGAGGCTTCTTC
58.311
47.619
4.92
4.92
0.00
2.87
4972
14373
2.839486
TCGTTGTGATGAGGCTTCTT
57.161
45.000
0.00
0.00
0.00
2.52
4982
14383
3.134623
TCATTAGGCTCCATCGTTGTGAT
59.865
43.478
0.00
0.00
38.01
3.06
4983
14384
2.499693
TCATTAGGCTCCATCGTTGTGA
59.500
45.455
0.00
0.00
0.00
3.58
4984
14385
2.609459
GTCATTAGGCTCCATCGTTGTG
59.391
50.000
0.00
0.00
0.00
3.33
4985
14386
2.236146
TGTCATTAGGCTCCATCGTTGT
59.764
45.455
0.00
0.00
0.00
3.32
4986
14387
2.905075
TGTCATTAGGCTCCATCGTTG
58.095
47.619
0.00
0.00
0.00
4.10
4987
14388
3.845781
ATGTCATTAGGCTCCATCGTT
57.154
42.857
0.00
0.00
0.00
3.85
4988
14389
4.345257
ACTTATGTCATTAGGCTCCATCGT
59.655
41.667
4.00
0.00
0.00
3.73
4989
14390
4.887748
ACTTATGTCATTAGGCTCCATCG
58.112
43.478
4.00
0.00
0.00
3.84
4990
14391
5.221722
TGGACTTATGTCATTAGGCTCCATC
60.222
44.000
10.60
0.00
44.61
3.51
4991
14392
4.660303
TGGACTTATGTCATTAGGCTCCAT
59.340
41.667
10.60
0.00
44.61
3.41
4992
14393
4.037222
TGGACTTATGTCATTAGGCTCCA
58.963
43.478
10.60
5.99
44.61
3.86
4993
14394
4.381411
GTGGACTTATGTCATTAGGCTCC
58.619
47.826
10.60
3.68
44.61
4.70
4994
14395
4.141711
TGGTGGACTTATGTCATTAGGCTC
60.142
45.833
10.60
0.00
44.61
4.70
4995
14396
3.780294
TGGTGGACTTATGTCATTAGGCT
59.220
43.478
10.60
0.00
44.61
4.58
4996
14397
4.150897
TGGTGGACTTATGTCATTAGGC
57.849
45.455
10.60
0.00
44.61
3.93
4997
14398
7.912056
CATATGGTGGACTTATGTCATTAGG
57.088
40.000
10.60
0.00
44.61
2.69
5013
14414
2.327343
CGGCGGCATCCATATGGTG
61.327
63.158
21.28
18.12
36.34
4.17
5014
14415
2.032528
CGGCGGCATCCATATGGT
59.967
61.111
21.28
6.34
36.34
3.55
5015
14416
3.434319
GCGGCGGCATCCATATGG
61.434
66.667
16.25
16.25
39.62
2.74
5016
14417
3.434319
GGCGGCGGCATCCATATG
61.434
66.667
29.41
0.00
42.47
1.78
5017
14418
3.952508
TGGCGGCGGCATCCATAT
61.953
61.111
33.02
0.00
42.47
1.78
5018
14419
4.927782
GTGGCGGCGGCATCCATA
62.928
66.667
38.08
12.56
40.92
2.74
5026
14427
3.625082
GAAAATGGTGTGGCGGCGG
62.625
63.158
9.78
0.00
0.00
6.13
5027
14428
2.126502
GAAAATGGTGTGGCGGCG
60.127
61.111
0.51
0.51
0.00
6.46
5028
14429
2.126502
CGAAAATGGTGTGGCGGC
60.127
61.111
0.00
0.00
0.00
6.53
5029
14430
2.126502
GCGAAAATGGTGTGGCGG
60.127
61.111
0.00
0.00
0.00
6.13
5030
14431
1.003262
CAAGCGAAAATGGTGTGGCG
61.003
55.000
0.00
0.00
0.00
5.69
5031
14432
0.313672
TCAAGCGAAAATGGTGTGGC
59.686
50.000
0.00
0.00
0.00
5.01
5032
14433
2.223688
TGTTCAAGCGAAAATGGTGTGG
60.224
45.455
0.00
0.00
31.43
4.17
5033
14434
3.044986
CTGTTCAAGCGAAAATGGTGTG
58.955
45.455
0.00
0.00
31.43
3.82
5034
14435
2.948979
TCTGTTCAAGCGAAAATGGTGT
59.051
40.909
0.00
0.00
31.43
4.16
5035
14436
3.003689
AGTCTGTTCAAGCGAAAATGGTG
59.996
43.478
0.00
0.00
31.43
4.17
5036
14437
3.214328
AGTCTGTTCAAGCGAAAATGGT
58.786
40.909
0.00
0.00
31.43
3.55
5037
14438
3.904136
AGTCTGTTCAAGCGAAAATGG
57.096
42.857
0.00
0.00
31.43
3.16
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.