Multiple sequence alignment - TraesCS7B01G365400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G365400 chr7B 100.000 3126 0 0 1 3126 628763879 628760754 0.000000e+00 5773.0
1 TraesCS7B01G365400 chr7B 92.689 1737 97 17 635 2361 85812880 85811164 0.000000e+00 2477.0
2 TraesCS7B01G365400 chr7B 81.390 892 65 52 2249 3126 85811165 85810361 4.400000e-178 634.0
3 TraesCS7B01G365400 chr7B 84.842 442 40 12 160 581 627607700 627608134 1.340000e-113 420.0
4 TraesCS7B01G365400 chr7B 88.727 275 17 5 2198 2461 85811275 85811004 1.080000e-84 324.0
5 TraesCS7B01G365400 chr1B 93.218 2536 98 42 629 3126 186183728 186186227 0.000000e+00 3663.0
6 TraesCS7B01G365400 chr1B 95.008 1843 78 9 629 2461 483121719 483123557 0.000000e+00 2881.0
7 TraesCS7B01G365400 chr1B 91.746 1781 94 25 626 2361 589975508 589973736 0.000000e+00 2425.0
8 TraesCS7B01G365400 chr1B 83.371 896 80 29 2249 3126 483123396 483124240 0.000000e+00 765.0
9 TraesCS7B01G365400 chr1B 92.739 303 20 2 2825 3126 589973263 589972962 1.330000e-118 436.0
10 TraesCS7B01G365400 chr1B 82.196 337 31 17 2249 2583 589973737 589973428 2.390000e-66 263.0
11 TraesCS7B01G365400 chr6B 95.785 1827 64 7 629 2446 125379514 125377692 0.000000e+00 2935.0
12 TraesCS7B01G365400 chr6B 96.333 300 11 0 2827 3126 125377053 125376754 7.790000e-136 494.0
13 TraesCS7B01G365400 chr6B 88.991 327 10 3 2396 2696 125377550 125377224 6.330000e-102 381.0
14 TraesCS7B01G365400 chr6B 88.506 87 9 1 2617 2703 125377209 125377124 1.530000e-18 104.0
15 TraesCS7B01G365400 chr3B 91.522 2135 91 32 623 2703 27214144 27212046 0.000000e+00 2857.0
16 TraesCS7B01G365400 chr3B 92.344 1476 81 19 629 2097 18396630 18395180 0.000000e+00 2071.0
17 TraesCS7B01G365400 chr3B 95.270 296 11 3 2834 3126 27211994 27211699 1.700000e-127 466.0
18 TraesCS7B01G365400 chr3B 90.000 220 21 1 629 847 27205591 27205810 1.840000e-72 283.0
19 TraesCS7B01G365400 chr5B 94.514 1841 69 10 629 2461 503108350 503110166 0.000000e+00 2811.0
20 TraesCS7B01G365400 chr5B 94.414 913 42 6 629 1535 477524610 477523701 0.000000e+00 1395.0
21 TraesCS7B01G365400 chr5B 81.573 890 69 47 2249 3126 335543642 335542836 0.000000e+00 647.0
22 TraesCS7B01G365400 chr5B 94.649 299 16 0 2828 3126 503110613 503110911 6.110000e-127 464.0
23 TraesCS7B01G365400 chr5B 82.151 465 33 20 2249 2693 503110005 503110439 1.380000e-93 353.0
24 TraesCS7B01G365400 chr5B 89.818 275 17 4 2198 2461 335543752 335543478 2.990000e-90 342.0
25 TraesCS7B01G365400 chr5B 88.506 87 9 1 2617 2703 503110457 503110542 1.530000e-18 104.0
26 TraesCS7B01G365400 chr4B 94.834 1742 49 9 629 2361 653538149 653536440 0.000000e+00 2680.0
27 TraesCS7B01G365400 chr4B 80.968 909 73 47 2249 3126 653536441 653535602 2.050000e-176 628.0
28 TraesCS7B01G365400 chr4B 97.814 183 4 0 2249 2431 653536499 653536317 1.810000e-82 316.0
29 TraesCS7B01G365400 chr2A 93.880 1013 20 14 1357 2348 623550920 623551911 0.000000e+00 1489.0
30 TraesCS7B01G365400 chr2A 89.504 686 51 5 1521 2206 701187665 701188329 0.000000e+00 848.0
31 TraesCS7B01G365400 chr2A 87.926 704 63 9 1498 2201 698145968 698146649 0.000000e+00 809.0
32 TraesCS7B01G365400 chr7A 93.386 1013 25 14 1357 2348 67658623 67659614 0.000000e+00 1461.0
33 TraesCS7B01G365400 chr7A 93.386 1013 25 14 1357 2348 353827446 353828437 0.000000e+00 1461.0
34 TraesCS7B01G365400 chr7A 86.737 475 33 7 166 628 661284300 661283844 4.650000e-138 501.0
35 TraesCS7B01G365400 chr7A 79.043 606 73 34 13 580 660490949 660491538 1.770000e-97 366.0
36 TraesCS7B01G365400 chr7A 91.603 131 10 1 11 140 661285633 661285503 2.480000e-41 180.0
37 TraesCS7B01G365400 chr7A 92.727 55 0 3 2354 2404 67659604 67659658 3.340000e-10 76.8
38 TraesCS7B01G365400 chr4A 93.386 1013 25 15 1357 2348 16496971 16495980 0.000000e+00 1461.0
39 TraesCS7B01G365400 chr1A 91.313 1013 21 23 1357 2348 376719215 376718249 0.000000e+00 1321.0
40 TraesCS7B01G365400 chr2B 83.297 916 50 33 2249 3126 578205507 578206357 0.000000e+00 749.0
41 TraesCS7B01G365400 chr7D 86.556 662 41 15 1 628 572002180 572001533 0.000000e+00 686.0
42 TraesCS7B01G365400 chr7D 83.596 445 35 11 160 582 571473931 571474359 1.760000e-102 383.0
43 TraesCS7B01G365400 chr7D 89.286 56 0 2 99 148 571473843 571473898 7.240000e-07 65.8
44 TraesCS7B01G365400 chr5D 89.492 295 25 3 2837 3126 77451220 77450927 4.930000e-98 368.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G365400 chr7B 628760754 628763879 3125 True 5773.000000 5773 100.000000 1 3126 1 chr7B.!!$R1 3125
1 TraesCS7B01G365400 chr7B 85810361 85812880 2519 True 1145.000000 2477 87.602000 635 3126 3 chr7B.!!$R2 2491
2 TraesCS7B01G365400 chr1B 186183728 186186227 2499 False 3663.000000 3663 93.218000 629 3126 1 chr1B.!!$F1 2497
3 TraesCS7B01G365400 chr1B 483121719 483124240 2521 False 1823.000000 2881 89.189500 629 3126 2 chr1B.!!$F2 2497
4 TraesCS7B01G365400 chr1B 589972962 589975508 2546 True 1041.333333 2425 88.893667 626 3126 3 chr1B.!!$R1 2500
5 TraesCS7B01G365400 chr6B 125376754 125379514 2760 True 978.500000 2935 92.403750 629 3126 4 chr6B.!!$R1 2497
6 TraesCS7B01G365400 chr3B 18395180 18396630 1450 True 2071.000000 2071 92.344000 629 2097 1 chr3B.!!$R1 1468
7 TraesCS7B01G365400 chr3B 27211699 27214144 2445 True 1661.500000 2857 93.396000 623 3126 2 chr3B.!!$R2 2503
8 TraesCS7B01G365400 chr5B 477523701 477524610 909 True 1395.000000 1395 94.414000 629 1535 1 chr5B.!!$R1 906
9 TraesCS7B01G365400 chr5B 503108350 503110911 2561 False 933.000000 2811 89.955000 629 3126 4 chr5B.!!$F1 2497
10 TraesCS7B01G365400 chr5B 335542836 335543752 916 True 494.500000 647 85.695500 2198 3126 2 chr5B.!!$R2 928
11 TraesCS7B01G365400 chr4B 653535602 653538149 2547 True 1208.000000 2680 91.205333 629 3126 3 chr4B.!!$R1 2497
12 TraesCS7B01G365400 chr2A 623550920 623551911 991 False 1489.000000 1489 93.880000 1357 2348 1 chr2A.!!$F1 991
13 TraesCS7B01G365400 chr2A 701187665 701188329 664 False 848.000000 848 89.504000 1521 2206 1 chr2A.!!$F3 685
14 TraesCS7B01G365400 chr2A 698145968 698146649 681 False 809.000000 809 87.926000 1498 2201 1 chr2A.!!$F2 703
15 TraesCS7B01G365400 chr7A 353827446 353828437 991 False 1461.000000 1461 93.386000 1357 2348 1 chr7A.!!$F1 991
16 TraesCS7B01G365400 chr7A 67658623 67659658 1035 False 768.900000 1461 93.056500 1357 2404 2 chr7A.!!$F3 1047
17 TraesCS7B01G365400 chr7A 660490949 660491538 589 False 366.000000 366 79.043000 13 580 1 chr7A.!!$F2 567
18 TraesCS7B01G365400 chr7A 661283844 661285633 1789 True 340.500000 501 89.170000 11 628 2 chr7A.!!$R1 617
19 TraesCS7B01G365400 chr4A 16495980 16496971 991 True 1461.000000 1461 93.386000 1357 2348 1 chr4A.!!$R1 991
20 TraesCS7B01G365400 chr1A 376718249 376719215 966 True 1321.000000 1321 91.313000 1357 2348 1 chr1A.!!$R1 991
21 TraesCS7B01G365400 chr2B 578205507 578206357 850 False 749.000000 749 83.297000 2249 3126 1 chr2B.!!$F1 877
22 TraesCS7B01G365400 chr7D 572001533 572002180 647 True 686.000000 686 86.556000 1 628 1 chr7D.!!$R1 627
23 TraesCS7B01G365400 chr7D 571473843 571474359 516 False 224.400000 383 86.441000 99 582 2 chr7D.!!$F1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 479 0.031449 GTATCTCCAGCTCACGCTCC 59.969 60.0 0.0 0.0 45.15 4.70 F
502 505 0.181350 GCCTCATCGGGACAAAGGAT 59.819 55.0 0.0 0.0 0.00 3.24 F
606 609 0.248621 CAAGGGGATCGAAATTGCGC 60.249 55.0 0.0 0.0 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1624 2.885554 GCCATTCAGGGTCAATCCACTT 60.886 50.000 0.00 0.00 38.09 3.16 R
1841 2008 5.349270 CAGACATCTTCTTCTTCTCAAGCTG 59.651 44.000 0.00 0.00 28.96 4.24 R
2413 3708 8.349983 ACATCTTCAGTTTAACACATGTTAACC 58.650 33.333 15.14 9.72 46.48 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 151 6.598457 GGAAGAGAGTTAATTAACTTGACCCC 59.402 42.308 27.27 21.18 45.84 4.95
149 152 6.697641 AGAGAGTTAATTAACTTGACCCCA 57.302 37.500 27.27 0.00 45.84 4.96
155 158 2.649531 TTAACTTGACCCCACACCAG 57.350 50.000 0.00 0.00 0.00 4.00
156 159 0.109723 TAACTTGACCCCACACCAGC 59.890 55.000 0.00 0.00 0.00 4.85
157 160 2.282462 CTTGACCCCACACCAGCC 60.282 66.667 0.00 0.00 0.00 4.85
158 161 3.099841 TTGACCCCACACCAGCCA 61.100 61.111 0.00 0.00 0.00 4.75
159 162 2.430704 CTTGACCCCACACCAGCCAT 62.431 60.000 0.00 0.00 0.00 4.40
160 163 2.017668 TTGACCCCACACCAGCCATT 62.018 55.000 0.00 0.00 0.00 3.16
161 164 1.978617 GACCCCACACCAGCCATTG 60.979 63.158 0.00 0.00 0.00 2.82
162 165 2.118076 CCCCACACCAGCCATTGT 59.882 61.111 0.00 0.00 0.00 2.71
163 166 1.533753 CCCCACACCAGCCATTGTT 60.534 57.895 0.00 0.00 0.00 2.83
164 167 1.120795 CCCCACACCAGCCATTGTTT 61.121 55.000 0.00 0.00 0.00 2.83
165 168 0.033781 CCCACACCAGCCATTGTTTG 59.966 55.000 0.00 0.00 0.00 2.93
176 179 3.038788 CCATTGTTTGGCCAAGTAACC 57.961 47.619 19.48 6.28 39.09 2.85
177 180 2.366916 CCATTGTTTGGCCAAGTAACCA 59.633 45.455 19.48 6.65 39.09 3.67
178 181 3.007831 CCATTGTTTGGCCAAGTAACCAT 59.992 43.478 19.48 8.82 39.09 3.55
179 182 4.244862 CATTGTTTGGCCAAGTAACCATC 58.755 43.478 19.48 4.07 35.42 3.51
180 183 2.950781 TGTTTGGCCAAGTAACCATCA 58.049 42.857 19.48 6.46 35.42 3.07
181 184 3.505386 TGTTTGGCCAAGTAACCATCAT 58.495 40.909 19.48 0.00 35.42 2.45
182 185 3.509575 TGTTTGGCCAAGTAACCATCATC 59.490 43.478 19.48 0.00 35.42 2.92
183 186 2.435372 TGGCCAAGTAACCATCATCC 57.565 50.000 0.61 0.00 0.00 3.51
184 187 1.308998 GGCCAAGTAACCATCATCCG 58.691 55.000 0.00 0.00 0.00 4.18
185 188 0.663153 GCCAAGTAACCATCATCCGC 59.337 55.000 0.00 0.00 0.00 5.54
186 189 1.747206 GCCAAGTAACCATCATCCGCT 60.747 52.381 0.00 0.00 0.00 5.52
187 190 2.484770 GCCAAGTAACCATCATCCGCTA 60.485 50.000 0.00 0.00 0.00 4.26
188 191 3.804036 CCAAGTAACCATCATCCGCTAA 58.196 45.455 0.00 0.00 0.00 3.09
189 192 4.389374 CCAAGTAACCATCATCCGCTAAT 58.611 43.478 0.00 0.00 0.00 1.73
190 193 4.821805 CCAAGTAACCATCATCCGCTAATT 59.178 41.667 0.00 0.00 0.00 1.40
191 194 5.299279 CCAAGTAACCATCATCCGCTAATTT 59.701 40.000 0.00 0.00 0.00 1.82
192 195 6.485313 CCAAGTAACCATCATCCGCTAATTTA 59.515 38.462 0.00 0.00 0.00 1.40
193 196 7.352739 CAAGTAACCATCATCCGCTAATTTAC 58.647 38.462 0.00 0.00 0.00 2.01
194 197 6.827727 AGTAACCATCATCCGCTAATTTACT 58.172 36.000 0.00 0.00 0.00 2.24
195 198 6.929606 AGTAACCATCATCCGCTAATTTACTC 59.070 38.462 0.00 0.00 0.00 2.59
196 199 5.552870 ACCATCATCCGCTAATTTACTCT 57.447 39.130 0.00 0.00 0.00 3.24
197 200 5.930135 ACCATCATCCGCTAATTTACTCTT 58.070 37.500 0.00 0.00 0.00 2.85
198 201 6.357367 ACCATCATCCGCTAATTTACTCTTT 58.643 36.000 0.00 0.00 0.00 2.52
199 202 6.260936 ACCATCATCCGCTAATTTACTCTTTG 59.739 38.462 0.00 0.00 0.00 2.77
200 203 6.293626 CCATCATCCGCTAATTTACTCTTTGG 60.294 42.308 0.00 0.00 0.00 3.28
201 204 4.574828 TCATCCGCTAATTTACTCTTTGGC 59.425 41.667 0.00 0.00 0.00 4.52
202 205 3.275999 TCCGCTAATTTACTCTTTGGCC 58.724 45.455 0.00 0.00 0.00 5.36
203 206 3.013921 CCGCTAATTTACTCTTTGGCCA 58.986 45.455 0.00 0.00 0.00 5.36
204 207 3.181500 CCGCTAATTTACTCTTTGGCCAC 60.181 47.826 3.88 0.00 0.00 5.01
205 208 3.485216 CGCTAATTTACTCTTTGGCCACG 60.485 47.826 3.88 0.00 0.00 4.94
206 209 3.730963 GCTAATTTACTCTTTGGCCACGC 60.731 47.826 3.88 0.00 0.00 5.34
207 210 1.904287 ATTTACTCTTTGGCCACGCA 58.096 45.000 3.88 0.00 0.00 5.24
208 211 1.681538 TTTACTCTTTGGCCACGCAA 58.318 45.000 3.88 0.00 0.00 4.85
209 212 1.681538 TTACTCTTTGGCCACGCAAA 58.318 45.000 3.88 0.00 0.00 3.68
210 213 0.948678 TACTCTTTGGCCACGCAAAC 59.051 50.000 3.88 0.00 0.00 2.93
211 214 1.034838 ACTCTTTGGCCACGCAAACA 61.035 50.000 3.88 0.00 0.00 2.83
212 215 0.314935 CTCTTTGGCCACGCAAACAT 59.685 50.000 3.88 0.00 0.00 2.71
213 216 1.539388 CTCTTTGGCCACGCAAACATA 59.461 47.619 3.88 0.00 0.00 2.29
214 217 1.539388 TCTTTGGCCACGCAAACATAG 59.461 47.619 3.88 0.00 0.00 2.23
215 218 1.539388 CTTTGGCCACGCAAACATAGA 59.461 47.619 3.88 0.00 0.00 1.98
216 219 1.832883 TTGGCCACGCAAACATAGAT 58.167 45.000 3.88 0.00 0.00 1.98
217 220 1.378531 TGGCCACGCAAACATAGATC 58.621 50.000 0.00 0.00 0.00 2.75
218 221 0.304705 GGCCACGCAAACATAGATCG 59.695 55.000 0.00 0.00 0.00 3.69
219 222 1.006832 GCCACGCAAACATAGATCGT 58.993 50.000 0.00 0.00 0.00 3.73
220 223 1.004927 GCCACGCAAACATAGATCGTC 60.005 52.381 0.00 0.00 0.00 4.20
221 224 2.540515 CCACGCAAACATAGATCGTCT 58.459 47.619 0.00 0.00 0.00 4.18
222 225 2.282555 CCACGCAAACATAGATCGTCTG 59.717 50.000 0.00 0.00 0.00 3.51
223 226 1.927174 ACGCAAACATAGATCGTCTGC 59.073 47.619 0.00 0.00 0.00 4.26
224 227 2.196749 CGCAAACATAGATCGTCTGCT 58.803 47.619 0.00 0.00 0.00 4.24
225 228 2.604914 CGCAAACATAGATCGTCTGCTT 59.395 45.455 0.00 0.00 0.00 3.91
226 229 3.062639 CGCAAACATAGATCGTCTGCTTT 59.937 43.478 0.00 0.00 0.00 3.51
227 230 4.267690 CGCAAACATAGATCGTCTGCTTTA 59.732 41.667 0.00 0.00 0.00 1.85
228 231 5.050769 CGCAAACATAGATCGTCTGCTTTAT 60.051 40.000 0.00 0.00 0.00 1.40
229 232 6.132056 GCAAACATAGATCGTCTGCTTTATG 58.868 40.000 0.00 0.00 0.00 1.90
230 233 6.018751 GCAAACATAGATCGTCTGCTTTATGA 60.019 38.462 2.41 0.00 0.00 2.15
231 234 7.307632 GCAAACATAGATCGTCTGCTTTATGAT 60.308 37.037 2.41 0.00 0.00 2.45
232 235 8.554528 CAAACATAGATCGTCTGCTTTATGATT 58.445 33.333 2.41 0.00 0.00 2.57
233 236 7.881643 ACATAGATCGTCTGCTTTATGATTC 57.118 36.000 2.41 0.00 0.00 2.52
234 237 6.584184 ACATAGATCGTCTGCTTTATGATTCG 59.416 38.462 2.41 0.00 0.00 3.34
235 238 3.738282 AGATCGTCTGCTTTATGATTCGC 59.262 43.478 0.00 0.00 0.00 4.70
236 239 1.852280 TCGTCTGCTTTATGATTCGCG 59.148 47.619 0.00 0.00 0.00 5.87
237 240 1.852280 CGTCTGCTTTATGATTCGCGA 59.148 47.619 3.71 3.71 0.00 5.87
238 241 2.281498 CGTCTGCTTTATGATTCGCGAA 59.719 45.455 25.66 25.66 0.00 4.70
239 242 3.600235 CGTCTGCTTTATGATTCGCGAAG 60.600 47.826 27.20 12.44 0.00 3.79
240 243 3.551890 GTCTGCTTTATGATTCGCGAAGA 59.448 43.478 27.20 16.22 0.00 2.87
241 244 3.798878 TCTGCTTTATGATTCGCGAAGAG 59.201 43.478 27.20 16.55 0.00 2.85
242 245 3.780902 TGCTTTATGATTCGCGAAGAGA 58.219 40.909 27.20 13.25 0.00 3.10
243 246 3.551890 TGCTTTATGATTCGCGAAGAGAC 59.448 43.478 27.20 17.17 34.99 3.36
244 247 3.799420 GCTTTATGATTCGCGAAGAGACT 59.201 43.478 27.20 9.87 34.99 3.24
245 248 4.976731 GCTTTATGATTCGCGAAGAGACTA 59.023 41.667 27.20 10.83 34.99 2.59
246 249 5.116377 GCTTTATGATTCGCGAAGAGACTAG 59.884 44.000 27.20 18.93 34.99 2.57
247 250 6.373186 TTTATGATTCGCGAAGAGACTAGA 57.627 37.500 27.20 0.00 34.99 2.43
248 251 6.561737 TTATGATTCGCGAAGAGACTAGAT 57.438 37.500 27.20 6.60 34.99 1.98
249 252 4.475763 TGATTCGCGAAGAGACTAGATC 57.524 45.455 27.20 15.90 34.99 2.75
250 253 3.251245 TGATTCGCGAAGAGACTAGATCC 59.749 47.826 27.20 0.00 34.99 3.36
251 254 1.218763 TCGCGAAGAGACTAGATCCG 58.781 55.000 6.20 0.00 0.00 4.18
252 255 1.202498 TCGCGAAGAGACTAGATCCGA 60.202 52.381 6.20 0.00 0.00 4.55
253 256 1.193650 CGCGAAGAGACTAGATCCGAG 59.806 57.143 0.00 0.00 0.00 4.63
254 257 2.485903 GCGAAGAGACTAGATCCGAGA 58.514 52.381 0.00 0.00 0.00 4.04
255 258 2.222445 GCGAAGAGACTAGATCCGAGAC 59.778 54.545 0.00 0.00 0.00 3.36
256 259 2.473609 CGAAGAGACTAGATCCGAGACG 59.526 54.545 0.00 0.00 0.00 4.18
257 260 1.873698 AGAGACTAGATCCGAGACGC 58.126 55.000 0.00 0.00 0.00 5.19
258 261 0.509499 GAGACTAGATCCGAGACGCG 59.491 60.000 3.53 3.53 40.47 6.01
259 262 0.104487 AGACTAGATCCGAGACGCGA 59.896 55.000 15.93 0.00 44.57 5.87
260 263 0.232816 GACTAGATCCGAGACGCGAC 59.767 60.000 15.93 6.86 44.57 5.19
261 264 1.159098 ACTAGATCCGAGACGCGACC 61.159 60.000 15.93 3.72 44.57 4.79
262 265 2.160487 CTAGATCCGAGACGCGACCG 62.160 65.000 15.93 12.75 44.57 4.79
263 266 2.633681 TAGATCCGAGACGCGACCGA 62.634 60.000 15.93 2.71 44.57 4.69
264 267 3.509296 GATCCGAGACGCGACCGAG 62.509 68.421 15.93 7.26 44.57 4.63
265 268 4.747529 TCCGAGACGCGACCGAGA 62.748 66.667 15.93 9.37 44.57 4.04
266 269 3.574445 CCGAGACGCGACCGAGAT 61.574 66.667 15.93 0.00 44.57 2.75
267 270 2.351322 CGAGACGCGACCGAGATG 60.351 66.667 15.93 0.00 44.57 2.90
268 271 2.024871 GAGACGCGACCGAGATGG 59.975 66.667 15.93 0.00 46.41 3.51
269 272 2.437895 AGACGCGACCGAGATGGA 60.438 61.111 15.93 0.00 42.00 3.41
270 273 1.787057 GAGACGCGACCGAGATGGAT 61.787 60.000 15.93 0.00 42.00 3.41
271 274 1.065928 GACGCGACCGAGATGGATT 59.934 57.895 15.93 0.00 42.00 3.01
272 275 1.209275 GACGCGACCGAGATGGATTG 61.209 60.000 15.93 0.00 42.00 2.67
273 276 2.589492 CGCGACCGAGATGGATTGC 61.589 63.158 0.00 0.00 42.00 3.56
274 277 1.227380 GCGACCGAGATGGATTGCT 60.227 57.895 0.00 0.00 42.00 3.91
275 278 1.493950 GCGACCGAGATGGATTGCTG 61.494 60.000 0.00 0.00 42.00 4.41
276 279 0.179100 CGACCGAGATGGATTGCTGT 60.179 55.000 0.00 0.00 42.00 4.40
277 280 1.293924 GACCGAGATGGATTGCTGTG 58.706 55.000 0.00 0.00 42.00 3.66
278 281 0.107508 ACCGAGATGGATTGCTGTGG 60.108 55.000 0.00 0.00 42.00 4.17
279 282 0.178767 CCGAGATGGATTGCTGTGGA 59.821 55.000 0.00 0.00 42.00 4.02
280 283 1.407299 CCGAGATGGATTGCTGTGGAA 60.407 52.381 0.00 0.00 42.00 3.53
281 284 1.667724 CGAGATGGATTGCTGTGGAAC 59.332 52.381 0.00 0.00 37.35 3.62
282 285 1.667724 GAGATGGATTGCTGTGGAACG 59.332 52.381 0.00 0.00 42.39 3.95
283 286 0.099436 GATGGATTGCTGTGGAACGC 59.901 55.000 0.00 0.00 42.39 4.84
284 287 1.647545 ATGGATTGCTGTGGAACGCG 61.648 55.000 3.53 3.53 45.01 6.01
292 295 3.315765 TGTGGAACGCGGAATCTTT 57.684 47.368 12.47 0.00 45.01 2.52
293 296 1.600023 TGTGGAACGCGGAATCTTTT 58.400 45.000 12.47 0.00 45.01 2.27
294 297 1.950909 TGTGGAACGCGGAATCTTTTT 59.049 42.857 12.47 0.00 45.01 1.94
295 298 2.287308 TGTGGAACGCGGAATCTTTTTG 60.287 45.455 12.47 0.00 45.01 2.44
296 299 1.950909 TGGAACGCGGAATCTTTTTGT 59.049 42.857 12.47 0.00 0.00 2.83
297 300 3.058777 GTGGAACGCGGAATCTTTTTGTA 60.059 43.478 12.47 0.00 0.00 2.41
298 301 3.564644 TGGAACGCGGAATCTTTTTGTAA 59.435 39.130 12.47 0.00 0.00 2.41
299 302 4.036498 TGGAACGCGGAATCTTTTTGTAAA 59.964 37.500 12.47 0.00 0.00 2.01
300 303 4.615541 GGAACGCGGAATCTTTTTGTAAAG 59.384 41.667 12.47 0.00 41.74 1.85
301 304 4.823790 ACGCGGAATCTTTTTGTAAAGT 57.176 36.364 12.47 0.00 41.25 2.66
302 305 5.177725 ACGCGGAATCTTTTTGTAAAGTT 57.822 34.783 12.47 0.00 41.25 2.66
303 306 4.973663 ACGCGGAATCTTTTTGTAAAGTTG 59.026 37.500 12.47 0.00 41.25 3.16
304 307 4.973663 CGCGGAATCTTTTTGTAAAGTTGT 59.026 37.500 0.00 0.00 41.25 3.32
305 308 5.457473 CGCGGAATCTTTTTGTAAAGTTGTT 59.543 36.000 0.00 0.00 41.25 2.83
306 309 6.020201 CGCGGAATCTTTTTGTAAAGTTGTTT 60.020 34.615 0.00 0.00 41.25 2.83
307 310 7.463515 CGCGGAATCTTTTTGTAAAGTTGTTTT 60.464 33.333 0.00 0.00 41.25 2.43
308 311 8.172484 GCGGAATCTTTTTGTAAAGTTGTTTTT 58.828 29.630 0.00 0.00 41.25 1.94
309 312 9.683651 CGGAATCTTTTTGTAAAGTTGTTTTTC 57.316 29.630 0.00 0.00 41.25 2.29
310 313 9.683651 GGAATCTTTTTGTAAAGTTGTTTTTCG 57.316 29.630 0.00 0.00 41.25 3.46
313 316 7.930462 TCTTTTTGTAAAGTTGTTTTTCGTCG 58.070 30.769 0.00 0.00 41.25 5.12
314 317 7.802251 TCTTTTTGTAAAGTTGTTTTTCGTCGA 59.198 29.630 0.00 0.00 41.25 4.20
315 318 7.848716 TTTTGTAAAGTTGTTTTTCGTCGAA 57.151 28.000 2.90 2.90 0.00 3.71
316 319 6.835719 TTGTAAAGTTGTTTTTCGTCGAAC 57.164 33.333 7.29 0.00 0.00 3.95
317 320 6.168164 TGTAAAGTTGTTTTTCGTCGAACT 57.832 33.333 7.29 0.00 0.00 3.01
318 321 6.016718 TGTAAAGTTGTTTTTCGTCGAACTG 58.983 36.000 7.29 0.00 0.00 3.16
319 322 4.932268 AAGTTGTTTTTCGTCGAACTGA 57.068 36.364 7.29 0.00 0.00 3.41
320 323 4.932268 AGTTGTTTTTCGTCGAACTGAA 57.068 36.364 7.29 0.00 0.00 3.02
321 324 5.285798 AGTTGTTTTTCGTCGAACTGAAA 57.714 34.783 7.29 3.21 32.57 2.69
322 325 5.084055 AGTTGTTTTTCGTCGAACTGAAAC 58.916 37.500 19.66 19.66 34.07 2.78
323 326 4.932268 TGTTTTTCGTCGAACTGAAACT 57.068 36.364 23.74 0.00 34.07 2.66
324 327 6.091169 AGTTGTTTTTCGTCGAACTGAAACTA 59.909 34.615 23.74 17.83 34.07 2.24
325 328 6.406093 TGTTTTTCGTCGAACTGAAACTAA 57.594 33.333 23.74 10.44 34.07 2.24
326 329 6.829703 TGTTTTTCGTCGAACTGAAACTAAA 58.170 32.000 23.74 11.90 34.07 1.85
327 330 7.296660 TGTTTTTCGTCGAACTGAAACTAAAA 58.703 30.769 23.74 11.36 34.07 1.52
328 331 7.802251 TGTTTTTCGTCGAACTGAAACTAAAAA 59.198 29.630 23.74 10.82 34.07 1.94
361 364 2.176546 CGTGCAATGCAACGGGAG 59.823 61.111 10.44 0.00 41.47 4.30
362 365 2.126346 GTGCAATGCAACGGGAGC 60.126 61.111 10.44 0.00 41.47 4.70
363 366 2.282391 TGCAATGCAACGGGAGCT 60.282 55.556 5.01 0.00 34.76 4.09
364 367 1.002746 TGCAATGCAACGGGAGCTA 60.003 52.632 5.01 0.00 34.76 3.32
365 368 1.026182 TGCAATGCAACGGGAGCTAG 61.026 55.000 5.01 0.00 34.76 3.42
366 369 1.723870 CAATGCAACGGGAGCTAGC 59.276 57.895 6.62 6.62 0.00 3.42
367 370 0.745845 CAATGCAACGGGAGCTAGCT 60.746 55.000 19.45 19.45 0.00 3.32
368 371 0.035056 AATGCAACGGGAGCTAGCTT 60.035 50.000 20.42 0.00 0.00 3.74
369 372 0.745845 ATGCAACGGGAGCTAGCTTG 60.746 55.000 20.42 13.77 0.00 4.01
370 373 1.079127 GCAACGGGAGCTAGCTTGA 60.079 57.895 20.42 0.00 0.00 3.02
371 374 0.673644 GCAACGGGAGCTAGCTTGAA 60.674 55.000 20.42 0.00 0.00 2.69
372 375 1.808411 CAACGGGAGCTAGCTTGAAA 58.192 50.000 20.42 0.00 0.00 2.69
373 376 2.151202 CAACGGGAGCTAGCTTGAAAA 58.849 47.619 20.42 0.00 0.00 2.29
374 377 2.749621 CAACGGGAGCTAGCTTGAAAAT 59.250 45.455 20.42 1.28 0.00 1.82
375 378 3.073274 ACGGGAGCTAGCTTGAAAATT 57.927 42.857 20.42 0.00 0.00 1.82
376 379 2.749621 ACGGGAGCTAGCTTGAAAATTG 59.250 45.455 20.42 5.96 0.00 2.32
377 380 3.009723 CGGGAGCTAGCTTGAAAATTGA 58.990 45.455 20.42 0.00 0.00 2.57
378 381 3.440173 CGGGAGCTAGCTTGAAAATTGAA 59.560 43.478 20.42 0.00 0.00 2.69
379 382 4.096984 CGGGAGCTAGCTTGAAAATTGAAT 59.903 41.667 20.42 0.00 0.00 2.57
380 383 5.393461 CGGGAGCTAGCTTGAAAATTGAATT 60.393 40.000 20.42 0.00 0.00 2.17
381 384 5.809051 GGGAGCTAGCTTGAAAATTGAATTG 59.191 40.000 20.42 0.00 0.00 2.32
382 385 6.393171 GGAGCTAGCTTGAAAATTGAATTGT 58.607 36.000 20.42 0.00 0.00 2.71
383 386 6.870439 GGAGCTAGCTTGAAAATTGAATTGTT 59.130 34.615 20.42 0.00 0.00 2.83
384 387 7.386025 GGAGCTAGCTTGAAAATTGAATTGTTT 59.614 33.333 20.42 0.00 0.00 2.83
385 388 9.410556 GAGCTAGCTTGAAAATTGAATTGTTTA 57.589 29.630 20.42 0.00 0.00 2.01
386 389 9.415544 AGCTAGCTTGAAAATTGAATTGTTTAG 57.584 29.630 12.68 0.00 0.00 1.85
387 390 8.650714 GCTAGCTTGAAAATTGAATTGTTTAGG 58.349 33.333 7.70 0.00 0.00 2.69
388 391 7.425577 AGCTTGAAAATTGAATTGTTTAGGC 57.574 32.000 0.00 0.00 0.00 3.93
389 392 6.991531 AGCTTGAAAATTGAATTGTTTAGGCA 59.008 30.769 0.00 0.00 0.00 4.75
390 393 7.172019 AGCTTGAAAATTGAATTGTTTAGGCAG 59.828 33.333 0.00 0.00 0.00 4.85
391 394 7.171337 GCTTGAAAATTGAATTGTTTAGGCAGA 59.829 33.333 0.00 0.00 0.00 4.26
392 395 8.954950 TTGAAAATTGAATTGTTTAGGCAGAA 57.045 26.923 0.00 0.00 0.00 3.02
393 396 8.954950 TGAAAATTGAATTGTTTAGGCAGAAA 57.045 26.923 0.00 0.00 0.00 2.52
394 397 9.558396 TGAAAATTGAATTGTTTAGGCAGAAAT 57.442 25.926 0.00 0.00 0.00 2.17
413 416 7.259088 AGAAATATCTGACCACTTTACCAGT 57.741 36.000 0.00 0.00 33.59 4.00
414 417 7.690256 AGAAATATCTGACCACTTTACCAGTT 58.310 34.615 0.00 0.00 33.59 3.16
415 418 7.824779 AGAAATATCTGACCACTTTACCAGTTC 59.175 37.037 0.00 0.00 33.59 3.01
416 419 3.380479 TCTGACCACTTTACCAGTTCG 57.620 47.619 0.00 0.00 30.92 3.95
417 420 2.036733 TCTGACCACTTTACCAGTTCGG 59.963 50.000 0.00 0.00 42.50 4.30
428 431 2.981859 CCAGTTCGGTAATAGCCACT 57.018 50.000 0.00 0.00 0.00 4.00
429 432 2.822764 CCAGTTCGGTAATAGCCACTC 58.177 52.381 0.00 0.00 0.00 3.51
430 433 2.483188 CCAGTTCGGTAATAGCCACTCC 60.483 54.545 0.00 0.00 0.00 3.85
431 434 2.167693 CAGTTCGGTAATAGCCACTCCA 59.832 50.000 0.00 0.00 0.00 3.86
432 435 2.167900 AGTTCGGTAATAGCCACTCCAC 59.832 50.000 0.00 0.00 0.00 4.02
433 436 2.154567 TCGGTAATAGCCACTCCACT 57.845 50.000 0.00 0.00 0.00 4.00
434 437 2.463752 TCGGTAATAGCCACTCCACTT 58.536 47.619 0.00 0.00 0.00 3.16
435 438 2.835764 TCGGTAATAGCCACTCCACTTT 59.164 45.455 0.00 0.00 0.00 2.66
436 439 2.936498 CGGTAATAGCCACTCCACTTTG 59.064 50.000 0.00 0.00 0.00 2.77
437 440 3.618997 CGGTAATAGCCACTCCACTTTGT 60.619 47.826 0.00 0.00 0.00 2.83
438 441 4.332828 GGTAATAGCCACTCCACTTTGTT 58.667 43.478 0.00 0.00 0.00 2.83
439 442 4.395231 GGTAATAGCCACTCCACTTTGTTC 59.605 45.833 0.00 0.00 0.00 3.18
440 443 2.163818 TAGCCACTCCACTTTGTTCG 57.836 50.000 0.00 0.00 0.00 3.95
441 444 1.166531 AGCCACTCCACTTTGTTCGC 61.167 55.000 0.00 0.00 0.00 4.70
442 445 1.444119 GCCACTCCACTTTGTTCGCA 61.444 55.000 0.00 0.00 0.00 5.10
443 446 1.238439 CCACTCCACTTTGTTCGCAT 58.762 50.000 0.00 0.00 0.00 4.73
444 447 1.069022 CCACTCCACTTTGTTCGCATG 60.069 52.381 0.00 0.00 0.00 4.06
445 448 0.593128 ACTCCACTTTGTTCGCATGC 59.407 50.000 7.91 7.91 0.00 4.06
446 449 0.592637 CTCCACTTTGTTCGCATGCA 59.407 50.000 19.57 1.73 0.00 3.96
447 450 1.200716 CTCCACTTTGTTCGCATGCAT 59.799 47.619 19.57 0.00 0.00 3.96
448 451 1.068402 TCCACTTTGTTCGCATGCATG 60.068 47.619 22.70 22.70 0.00 4.06
464 467 6.099579 CATGCATGCTTTATACGTATCTCC 57.900 41.667 20.33 0.22 0.00 3.71
465 468 5.208463 TGCATGCTTTATACGTATCTCCA 57.792 39.130 20.33 6.02 0.00 3.86
466 469 5.230182 TGCATGCTTTATACGTATCTCCAG 58.770 41.667 20.33 5.24 0.00 3.86
467 470 4.092091 GCATGCTTTATACGTATCTCCAGC 59.908 45.833 12.24 14.64 0.00 4.85
468 471 5.473931 CATGCTTTATACGTATCTCCAGCT 58.526 41.667 12.24 3.63 0.00 4.24
469 472 5.122512 TGCTTTATACGTATCTCCAGCTC 57.877 43.478 12.24 0.00 0.00 4.09
470 473 4.583073 TGCTTTATACGTATCTCCAGCTCA 59.417 41.667 12.24 0.00 0.00 4.26
471 474 4.918583 GCTTTATACGTATCTCCAGCTCAC 59.081 45.833 12.24 0.00 0.00 3.51
472 475 4.744136 TTATACGTATCTCCAGCTCACG 57.256 45.455 12.24 0.00 38.52 4.35
473 476 0.661552 TACGTATCTCCAGCTCACGC 59.338 55.000 0.00 0.00 36.11 5.34
475 478 0.317436 CGTATCTCCAGCTCACGCTC 60.317 60.000 0.00 0.00 45.15 5.03
476 479 0.031449 GTATCTCCAGCTCACGCTCC 59.969 60.000 0.00 0.00 45.15 4.70
477 480 1.109920 TATCTCCAGCTCACGCTCCC 61.110 60.000 0.00 0.00 45.15 4.30
478 481 2.870035 ATCTCCAGCTCACGCTCCCT 62.870 60.000 0.00 0.00 45.15 4.20
479 482 2.604686 TCCAGCTCACGCTCCCTT 60.605 61.111 0.00 0.00 45.15 3.95
480 483 2.125350 CCAGCTCACGCTCCCTTC 60.125 66.667 0.00 0.00 45.15 3.46
481 484 2.125350 CAGCTCACGCTCCCTTCC 60.125 66.667 0.00 0.00 45.15 3.46
482 485 2.284258 AGCTCACGCTCCCTTCCT 60.284 61.111 0.00 0.00 45.15 3.36
483 486 2.125350 GCTCACGCTCCCTTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
484 487 2.125350 CTCACGCTCCCTTCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
485 488 3.672295 CTCACGCTCCCTTCCTGCC 62.672 68.421 0.00 0.00 0.00 4.85
486 489 3.710722 CACGCTCCCTTCCTGCCT 61.711 66.667 0.00 0.00 0.00 4.75
487 490 3.394836 ACGCTCCCTTCCTGCCTC 61.395 66.667 0.00 0.00 0.00 4.70
488 491 3.393970 CGCTCCCTTCCTGCCTCA 61.394 66.667 0.00 0.00 0.00 3.86
489 492 2.739996 CGCTCCCTTCCTGCCTCAT 61.740 63.158 0.00 0.00 0.00 2.90
490 493 1.148048 GCTCCCTTCCTGCCTCATC 59.852 63.158 0.00 0.00 0.00 2.92
491 494 1.445095 CTCCCTTCCTGCCTCATCG 59.555 63.158 0.00 0.00 0.00 3.84
492 495 2.037620 CTCCCTTCCTGCCTCATCGG 62.038 65.000 0.00 0.00 0.00 4.18
493 496 2.507944 CCTTCCTGCCTCATCGGG 59.492 66.667 0.00 0.00 0.00 5.14
494 497 2.066393 CCTTCCTGCCTCATCGGGA 61.066 63.158 0.00 0.00 39.65 5.14
495 498 1.144936 CTTCCTGCCTCATCGGGAC 59.855 63.158 0.00 0.00 41.02 4.46
496 499 1.612146 TTCCTGCCTCATCGGGACA 60.612 57.895 0.00 0.00 41.02 4.02
497 500 1.198094 TTCCTGCCTCATCGGGACAA 61.198 55.000 0.00 0.00 41.02 3.18
498 501 1.198094 TCCTGCCTCATCGGGACAAA 61.198 55.000 0.00 0.00 36.62 2.83
499 502 0.745845 CCTGCCTCATCGGGACAAAG 60.746 60.000 0.00 0.00 34.34 2.77
500 503 0.745845 CTGCCTCATCGGGACAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
501 504 1.198094 TGCCTCATCGGGACAAAGGA 61.198 55.000 0.00 0.00 0.00 3.36
502 505 0.181350 GCCTCATCGGGACAAAGGAT 59.819 55.000 0.00 0.00 0.00 3.24
503 506 1.416401 GCCTCATCGGGACAAAGGATA 59.584 52.381 0.00 0.00 0.00 2.59
504 507 2.039084 GCCTCATCGGGACAAAGGATAT 59.961 50.000 0.00 0.00 0.00 1.63
505 508 3.496870 GCCTCATCGGGACAAAGGATATT 60.497 47.826 0.00 0.00 0.00 1.28
506 509 4.067896 CCTCATCGGGACAAAGGATATTG 58.932 47.826 0.00 0.00 36.37 1.90
507 510 3.476552 TCATCGGGACAAAGGATATTGC 58.523 45.455 0.00 0.00 33.52 3.56
508 511 3.136443 TCATCGGGACAAAGGATATTGCT 59.864 43.478 0.00 0.00 33.52 3.91
509 512 4.346709 TCATCGGGACAAAGGATATTGCTA 59.653 41.667 0.00 0.00 33.52 3.49
510 513 4.974645 TCGGGACAAAGGATATTGCTAT 57.025 40.909 0.00 0.00 33.52 2.97
511 514 6.212589 TCATCGGGACAAAGGATATTGCTATA 59.787 38.462 0.00 0.00 33.52 1.31
512 515 6.620877 TCGGGACAAAGGATATTGCTATAT 57.379 37.500 0.00 0.00 33.52 0.86
513 516 7.016153 TCGGGACAAAGGATATTGCTATATT 57.984 36.000 2.13 0.00 33.52 1.28
514 517 7.103641 TCGGGACAAAGGATATTGCTATATTC 58.896 38.462 2.13 0.32 33.52 1.75
515 518 6.316390 CGGGACAAAGGATATTGCTATATTCC 59.684 42.308 2.13 4.40 33.52 3.01
516 519 7.175104 GGGACAAAGGATATTGCTATATTCCA 58.825 38.462 13.02 0.00 33.52 3.53
517 520 7.669722 GGGACAAAGGATATTGCTATATTCCAA 59.330 37.037 13.02 0.00 33.52 3.53
518 521 8.734386 GGACAAAGGATATTGCTATATTCCAAG 58.266 37.037 14.22 4.72 33.52 3.61
519 522 9.289782 GACAAAGGATATTGCTATATTCCAAGT 57.710 33.333 14.22 6.99 33.52 3.16
537 540 9.826574 ATTCCAAGTATAGTTTTATGTAGCGAA 57.173 29.630 0.00 0.00 0.00 4.70
538 541 9.656040 TTCCAAGTATAGTTTTATGTAGCGAAA 57.344 29.630 0.00 0.00 0.00 3.46
539 542 9.656040 TCCAAGTATAGTTTTATGTAGCGAAAA 57.344 29.630 0.00 0.00 0.00 2.29
543 546 8.557029 AGTATAGTTTTATGTAGCGAAAATGGC 58.443 33.333 0.00 0.00 0.00 4.40
544 547 5.897377 AGTTTTATGTAGCGAAAATGGCT 57.103 34.783 0.00 0.00 44.35 4.75
545 548 5.640732 AGTTTTATGTAGCGAAAATGGCTG 58.359 37.500 0.00 0.00 41.69 4.85
546 549 5.183140 AGTTTTATGTAGCGAAAATGGCTGT 59.817 36.000 0.00 0.00 41.69 4.40
547 550 4.614555 TTATGTAGCGAAAATGGCTGTG 57.385 40.909 0.00 0.00 41.69 3.66
548 551 1.164411 TGTAGCGAAAATGGCTGTGG 58.836 50.000 0.00 0.00 41.69 4.17
549 552 0.451783 GTAGCGAAAATGGCTGTGGG 59.548 55.000 0.00 0.00 41.69 4.61
550 553 1.312371 TAGCGAAAATGGCTGTGGGC 61.312 55.000 0.00 0.00 41.69 5.36
557 560 4.673298 TGGCTGTGGGCACGTACG 62.673 66.667 15.01 15.01 43.20 3.67
558 561 4.675029 GGCTGTGGGCACGTACGT 62.675 66.667 16.72 16.72 44.01 3.57
559 562 2.259204 GCTGTGGGCACGTACGTA 59.741 61.111 22.34 1.84 41.35 3.57
560 563 2.090524 GCTGTGGGCACGTACGTAC 61.091 63.158 22.34 16.05 41.35 3.67
571 574 1.895051 CGTACGTACGTAGGTTTGGG 58.105 55.000 33.95 7.63 44.13 4.12
572 575 1.199097 CGTACGTACGTAGGTTTGGGT 59.801 52.381 33.95 6.47 44.13 4.51
573 576 2.595386 GTACGTACGTAGGTTTGGGTG 58.405 52.381 27.48 0.00 0.00 4.61
574 577 0.318120 ACGTACGTAGGTTTGGGTGG 59.682 55.000 21.41 0.00 0.00 4.61
575 578 1.015607 CGTACGTAGGTTTGGGTGGC 61.016 60.000 7.22 0.00 0.00 5.01
576 579 1.015607 GTACGTAGGTTTGGGTGGCG 61.016 60.000 0.00 0.00 0.00 5.69
577 580 2.784889 TACGTAGGTTTGGGTGGCGC 62.785 60.000 0.00 0.00 0.00 6.53
578 581 2.281900 GTAGGTTTGGGTGGCGCA 60.282 61.111 10.83 0.00 0.00 6.09
579 582 2.281900 TAGGTTTGGGTGGCGCAC 60.282 61.111 10.83 5.50 0.00 5.34
580 583 3.121406 TAGGTTTGGGTGGCGCACA 62.121 57.895 10.83 0.00 35.86 4.57
581 584 2.626255 TAGGTTTGGGTGGCGCACAA 62.626 55.000 12.49 12.49 39.01 3.33
582 585 2.279186 GTTTGGGTGGCGCACAAC 60.279 61.111 16.53 7.65 40.75 3.32
583 586 2.755876 TTTGGGTGGCGCACAACA 60.756 55.556 16.53 4.55 40.75 3.33
584 587 2.780094 TTTGGGTGGCGCACAACAG 61.780 57.895 16.53 0.00 40.75 3.16
587 590 4.629115 GGTGGCGCACAACAGCAC 62.629 66.667 10.83 5.89 36.56 4.40
588 591 3.886694 GTGGCGCACAACAGCACA 61.887 61.111 10.83 0.00 34.08 4.57
589 592 3.136791 TGGCGCACAACAGCACAA 61.137 55.556 10.83 0.00 34.54 3.33
590 593 2.353839 GGCGCACAACAGCACAAG 60.354 61.111 10.83 0.00 34.54 3.16
591 594 2.353839 GCGCACAACAGCACAAGG 60.354 61.111 0.30 0.00 0.00 3.61
592 595 2.332514 CGCACAACAGCACAAGGG 59.667 61.111 0.00 0.00 0.00 3.95
593 596 2.730094 GCACAACAGCACAAGGGG 59.270 61.111 0.00 0.00 0.00 4.79
594 597 1.827789 GCACAACAGCACAAGGGGA 60.828 57.895 0.00 0.00 0.00 4.81
595 598 1.181098 GCACAACAGCACAAGGGGAT 61.181 55.000 0.00 0.00 0.00 3.85
596 599 0.883833 CACAACAGCACAAGGGGATC 59.116 55.000 0.00 0.00 0.00 3.36
597 600 0.606401 ACAACAGCACAAGGGGATCG 60.606 55.000 0.00 0.00 0.00 3.69
598 601 0.321564 CAACAGCACAAGGGGATCGA 60.322 55.000 0.00 0.00 0.00 3.59
599 602 0.400213 AACAGCACAAGGGGATCGAA 59.600 50.000 0.00 0.00 0.00 3.71
600 603 0.400213 ACAGCACAAGGGGATCGAAA 59.600 50.000 0.00 0.00 0.00 3.46
601 604 1.004745 ACAGCACAAGGGGATCGAAAT 59.995 47.619 0.00 0.00 0.00 2.17
602 605 2.094675 CAGCACAAGGGGATCGAAATT 58.905 47.619 0.00 0.00 0.00 1.82
603 606 2.094675 AGCACAAGGGGATCGAAATTG 58.905 47.619 0.00 0.00 0.00 2.32
604 607 1.469767 GCACAAGGGGATCGAAATTGC 60.470 52.381 0.00 0.00 0.00 3.56
605 608 1.094785 ACAAGGGGATCGAAATTGCG 58.905 50.000 0.00 0.00 0.00 4.85
606 609 0.248621 CAAGGGGATCGAAATTGCGC 60.249 55.000 0.00 0.00 0.00 6.09
607 610 1.384222 AAGGGGATCGAAATTGCGCC 61.384 55.000 4.18 0.00 0.00 6.53
608 611 1.823899 GGGGATCGAAATTGCGCCT 60.824 57.895 4.18 0.00 0.00 5.52
609 612 1.356624 GGGATCGAAATTGCGCCTG 59.643 57.895 4.18 0.00 0.00 4.85
610 613 1.298638 GGATCGAAATTGCGCCTGC 60.299 57.895 4.18 0.00 43.20 4.85
656 659 0.615331 GCATCAGGAGTCCCAGAACA 59.385 55.000 5.25 0.00 31.40 3.18
661 664 1.905215 CAGGAGTCCCAGAACATGTCT 59.095 52.381 5.25 0.00 36.88 3.41
796 800 2.125512 CACAGCCGGTCAGCCTAC 60.126 66.667 1.90 0.00 0.00 3.18
797 801 3.760035 ACAGCCGGTCAGCCTACG 61.760 66.667 1.90 0.00 0.00 3.51
864 874 6.631016 CACTACATCACCTTAGTTTAGCTGA 58.369 40.000 0.00 0.00 0.00 4.26
899 909 3.242867 TGGGATATTCTACTCAGCCCAG 58.757 50.000 0.00 0.00 39.07 4.45
1160 1181 3.806667 GGCTCCTGCTCCTGCCAT 61.807 66.667 0.00 0.00 44.34 4.40
1242 1263 4.979197 CAGTGTGTCTGTGAGAAGTTAGTC 59.021 45.833 0.00 0.00 39.17 2.59
1580 1624 7.375053 GGAAATACCTAAATGCAACTTTGTGA 58.625 34.615 0.00 0.00 35.41 3.58
2413 3708 9.878599 AAGATTCAGTTAACTGTATTTGTTTCG 57.121 29.630 29.83 5.33 44.12 3.46
2706 4320 9.910511 CTGAATATTTAGTGAATTGCAAAATGC 57.089 29.630 1.71 0.00 45.29 3.56
2707 4321 8.881743 TGAATATTTAGTGAATTGCAAAATGCC 58.118 29.630 1.71 0.00 44.23 4.40
2708 4322 8.789825 AATATTTAGTGAATTGCAAAATGCCA 57.210 26.923 1.71 0.00 44.23 4.92
2711 4325 7.593875 TTTAGTGAATTGCAAAATGCCATAC 57.406 32.000 1.71 0.00 44.23 2.39
2712 4326 5.149973 AGTGAATTGCAAAATGCCATACA 57.850 34.783 1.71 0.00 44.23 2.29
2713 4327 4.931002 AGTGAATTGCAAAATGCCATACAC 59.069 37.500 1.71 4.08 44.23 2.90
2714 4328 4.689812 GTGAATTGCAAAATGCCATACACA 59.310 37.500 1.71 0.00 44.23 3.72
2715 4329 4.930405 TGAATTGCAAAATGCCATACACAG 59.070 37.500 1.71 0.00 44.23 3.66
2716 4330 2.367030 TGCAAAATGCCATACACAGC 57.633 45.000 0.00 0.00 44.23 4.40
2717 4331 1.617357 TGCAAAATGCCATACACAGCA 59.383 42.857 0.00 0.00 44.23 4.41
2719 4333 2.264813 CAAAATGCCATACACAGCAGC 58.735 47.619 0.00 0.00 43.38 5.25
2720 4334 1.548081 AAATGCCATACACAGCAGCA 58.452 45.000 0.00 0.00 43.38 4.41
2721 4335 1.548081 AATGCCATACACAGCAGCAA 58.452 45.000 0.00 0.00 43.38 3.91
2724 4338 2.934887 TGCCATACACAGCAGCAATAT 58.065 42.857 0.00 0.00 33.08 1.28
2725 4339 3.289836 TGCCATACACAGCAGCAATATT 58.710 40.909 0.00 0.00 33.08 1.28
2726 4340 3.700539 TGCCATACACAGCAGCAATATTT 59.299 39.130 0.00 0.00 33.08 1.40
2727 4341 4.886489 TGCCATACACAGCAGCAATATTTA 59.114 37.500 0.00 0.00 33.08 1.40
2728 4342 5.008911 TGCCATACACAGCAGCAATATTTAG 59.991 40.000 0.00 0.00 33.08 1.85
2729 4343 5.009010 GCCATACACAGCAGCAATATTTAGT 59.991 40.000 0.00 0.00 0.00 2.24
2731 4345 6.260714 CCATACACAGCAGCAATATTTAGTGA 59.739 38.462 0.00 0.00 0.00 3.41
2733 4347 6.764308 ACACAGCAGCAATATTTAGTGAAT 57.236 33.333 0.00 0.00 0.00 2.57
2735 4349 8.455903 ACACAGCAGCAATATTTAGTGAATAT 57.544 30.769 0.00 0.00 41.60 1.28
2736 4350 8.562892 ACACAGCAGCAATATTTAGTGAATATC 58.437 33.333 0.00 0.00 39.47 1.63
2737 4351 8.019669 CACAGCAGCAATATTTAGTGAATATCC 58.980 37.037 0.00 0.00 39.47 2.59
2739 4353 8.235226 CAGCAGCAATATTTAGTGAATATCCAG 58.765 37.037 0.00 0.00 39.47 3.86
2740 4354 7.941238 AGCAGCAATATTTAGTGAATATCCAGT 59.059 33.333 0.00 0.00 39.47 4.00
2907 4521 7.148755 GCAGCATTGTAACCAAAATTAACAGAG 60.149 37.037 0.00 0.00 33.44 3.35
2947 4561 3.190535 CAGCATTGCAGCATAGCATCATA 59.809 43.478 18.60 0.00 45.19 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.339212 CAGGGGTGATTGTGATTTCAAGTAATA 59.661 37.037 0.00 0.00 0.00 0.98
7 8 5.009631 CAGGGGTGATTGTGATTTCAAGTA 58.990 41.667 0.00 0.00 0.00 2.24
8 9 3.828451 CAGGGGTGATTGTGATTTCAAGT 59.172 43.478 0.00 0.00 0.00 3.16
9 10 3.367703 GCAGGGGTGATTGTGATTTCAAG 60.368 47.826 0.00 0.00 0.00 3.02
148 151 3.591979 CCAAACAATGGCTGGTGTG 57.408 52.632 0.00 0.00 43.80 3.82
157 160 3.742433 TGGTTACTTGGCCAAACAATG 57.258 42.857 20.91 9.97 0.00 2.82
158 161 3.900601 TGATGGTTACTTGGCCAAACAAT 59.099 39.130 20.91 13.91 38.38 2.71
159 162 3.300388 TGATGGTTACTTGGCCAAACAA 58.700 40.909 20.91 13.20 38.38 2.83
160 163 2.950781 TGATGGTTACTTGGCCAAACA 58.049 42.857 20.91 7.62 38.38 2.83
161 164 3.119137 GGATGATGGTTACTTGGCCAAAC 60.119 47.826 20.91 14.85 38.38 2.93
162 165 3.096092 GGATGATGGTTACTTGGCCAAA 58.904 45.455 20.91 1.92 38.38 3.28
163 166 2.733956 GGATGATGGTTACTTGGCCAA 58.266 47.619 19.25 19.25 38.38 4.52
164 167 1.408127 CGGATGATGGTTACTTGGCCA 60.408 52.381 0.00 0.00 39.33 5.36
165 168 1.308998 CGGATGATGGTTACTTGGCC 58.691 55.000 0.00 0.00 0.00 5.36
166 169 0.663153 GCGGATGATGGTTACTTGGC 59.337 55.000 0.00 0.00 0.00 4.52
167 170 2.332063 AGCGGATGATGGTTACTTGG 57.668 50.000 0.00 0.00 0.00 3.61
168 171 6.377327 AAATTAGCGGATGATGGTTACTTG 57.623 37.500 0.00 0.00 0.00 3.16
169 172 7.280356 AGTAAATTAGCGGATGATGGTTACTT 58.720 34.615 0.00 0.00 0.00 2.24
170 173 6.827727 AGTAAATTAGCGGATGATGGTTACT 58.172 36.000 0.00 0.00 0.00 2.24
171 174 6.929606 AGAGTAAATTAGCGGATGATGGTTAC 59.070 38.462 0.00 0.00 0.00 2.50
172 175 7.062749 AGAGTAAATTAGCGGATGATGGTTA 57.937 36.000 0.00 0.00 0.00 2.85
173 176 5.930135 AGAGTAAATTAGCGGATGATGGTT 58.070 37.500 0.00 0.00 0.00 3.67
174 177 5.552870 AGAGTAAATTAGCGGATGATGGT 57.447 39.130 0.00 0.00 0.00 3.55
175 178 6.293626 CCAAAGAGTAAATTAGCGGATGATGG 60.294 42.308 0.00 0.00 0.00 3.51
176 179 6.662616 CCAAAGAGTAAATTAGCGGATGATG 58.337 40.000 0.00 0.00 0.00 3.07
177 180 5.239525 GCCAAAGAGTAAATTAGCGGATGAT 59.760 40.000 0.00 0.00 0.00 2.45
178 181 4.574828 GCCAAAGAGTAAATTAGCGGATGA 59.425 41.667 0.00 0.00 0.00 2.92
179 182 4.261197 GGCCAAAGAGTAAATTAGCGGATG 60.261 45.833 0.00 0.00 0.00 3.51
180 183 3.883489 GGCCAAAGAGTAAATTAGCGGAT 59.117 43.478 0.00 0.00 0.00 4.18
181 184 3.275999 GGCCAAAGAGTAAATTAGCGGA 58.724 45.455 0.00 0.00 0.00 5.54
182 185 3.013921 TGGCCAAAGAGTAAATTAGCGG 58.986 45.455 0.61 0.00 0.00 5.52
183 186 3.485216 CGTGGCCAAAGAGTAAATTAGCG 60.485 47.826 7.24 0.00 0.00 4.26
184 187 3.730963 GCGTGGCCAAAGAGTAAATTAGC 60.731 47.826 7.24 0.00 0.00 3.09
185 188 3.438781 TGCGTGGCCAAAGAGTAAATTAG 59.561 43.478 7.24 0.00 0.00 1.73
186 189 3.413327 TGCGTGGCCAAAGAGTAAATTA 58.587 40.909 7.24 0.00 0.00 1.40
187 190 2.235016 TGCGTGGCCAAAGAGTAAATT 58.765 42.857 7.24 0.00 0.00 1.82
188 191 1.904287 TGCGTGGCCAAAGAGTAAAT 58.096 45.000 7.24 0.00 0.00 1.40
189 192 1.681538 TTGCGTGGCCAAAGAGTAAA 58.318 45.000 7.24 0.00 0.00 2.01
190 193 1.335496 GTTTGCGTGGCCAAAGAGTAA 59.665 47.619 7.24 2.30 35.55 2.24
191 194 0.948678 GTTTGCGTGGCCAAAGAGTA 59.051 50.000 7.24 0.00 35.55 2.59
192 195 1.034838 TGTTTGCGTGGCCAAAGAGT 61.035 50.000 7.24 0.00 35.55 3.24
193 196 0.314935 ATGTTTGCGTGGCCAAAGAG 59.685 50.000 7.24 0.00 35.55 2.85
194 197 1.539388 CTATGTTTGCGTGGCCAAAGA 59.461 47.619 7.24 0.00 35.55 2.52
195 198 1.539388 TCTATGTTTGCGTGGCCAAAG 59.461 47.619 7.24 5.95 35.55 2.77
196 199 1.610363 TCTATGTTTGCGTGGCCAAA 58.390 45.000 7.24 0.00 32.66 3.28
197 200 1.742831 GATCTATGTTTGCGTGGCCAA 59.257 47.619 7.24 0.00 0.00 4.52
198 201 1.378531 GATCTATGTTTGCGTGGCCA 58.621 50.000 0.00 0.00 0.00 5.36
199 202 0.304705 CGATCTATGTTTGCGTGGCC 59.695 55.000 0.00 0.00 0.00 5.36
200 203 1.004927 GACGATCTATGTTTGCGTGGC 60.005 52.381 0.00 0.00 35.09 5.01
201 204 2.282555 CAGACGATCTATGTTTGCGTGG 59.717 50.000 0.00 0.00 35.09 4.94
202 205 2.285256 GCAGACGATCTATGTTTGCGTG 60.285 50.000 0.00 0.00 37.64 5.34
203 206 1.927174 GCAGACGATCTATGTTTGCGT 59.073 47.619 0.00 0.00 37.64 5.24
204 207 2.635141 GCAGACGATCTATGTTTGCG 57.365 50.000 0.00 0.00 37.64 4.85
205 208 4.606457 AAAGCAGACGATCTATGTTTGC 57.394 40.909 6.63 6.63 45.01 3.68
206 209 7.468922 TCATAAAGCAGACGATCTATGTTTG 57.531 36.000 0.00 0.00 0.00 2.93
207 210 8.668510 AATCATAAAGCAGACGATCTATGTTT 57.331 30.769 0.00 0.00 0.00 2.83
208 211 7.115520 CGAATCATAAAGCAGACGATCTATGTT 59.884 37.037 0.00 0.00 0.00 2.71
209 212 6.584184 CGAATCATAAAGCAGACGATCTATGT 59.416 38.462 0.00 0.00 0.00 2.29
210 213 6.453527 GCGAATCATAAAGCAGACGATCTATG 60.454 42.308 0.00 0.00 0.00 2.23
211 214 5.574830 GCGAATCATAAAGCAGACGATCTAT 59.425 40.000 0.00 0.00 0.00 1.98
212 215 4.917998 GCGAATCATAAAGCAGACGATCTA 59.082 41.667 0.00 0.00 0.00 1.98
213 216 3.738282 GCGAATCATAAAGCAGACGATCT 59.262 43.478 0.00 0.00 0.00 2.75
214 217 3.421055 CGCGAATCATAAAGCAGACGATC 60.421 47.826 0.00 0.00 0.00 3.69
215 218 2.472861 CGCGAATCATAAAGCAGACGAT 59.527 45.455 0.00 0.00 0.00 3.73
216 219 1.852280 CGCGAATCATAAAGCAGACGA 59.148 47.619 0.00 0.00 0.00 4.20
217 220 1.852280 TCGCGAATCATAAAGCAGACG 59.148 47.619 6.20 0.00 0.00 4.18
218 221 3.551890 TCTTCGCGAATCATAAAGCAGAC 59.448 43.478 23.67 0.00 0.00 3.51
219 222 3.780902 TCTTCGCGAATCATAAAGCAGA 58.219 40.909 23.67 8.93 0.00 4.26
220 223 3.798878 TCTCTTCGCGAATCATAAAGCAG 59.201 43.478 23.67 6.38 0.00 4.24
221 224 3.551890 GTCTCTTCGCGAATCATAAAGCA 59.448 43.478 23.67 0.00 0.00 3.91
222 225 3.799420 AGTCTCTTCGCGAATCATAAAGC 59.201 43.478 23.67 7.52 0.00 3.51
223 226 6.431278 TCTAGTCTCTTCGCGAATCATAAAG 58.569 40.000 23.67 15.50 0.00 1.85
224 227 6.373186 TCTAGTCTCTTCGCGAATCATAAA 57.627 37.500 23.67 6.44 0.00 1.40
225 228 6.348622 GGATCTAGTCTCTTCGCGAATCATAA 60.349 42.308 23.67 5.92 0.00 1.90
226 229 5.122554 GGATCTAGTCTCTTCGCGAATCATA 59.877 44.000 23.67 10.09 0.00 2.15
227 230 4.083003 GGATCTAGTCTCTTCGCGAATCAT 60.083 45.833 23.67 9.46 0.00 2.45
228 231 3.251245 GGATCTAGTCTCTTCGCGAATCA 59.749 47.826 23.67 11.17 0.00 2.57
229 232 3.665848 CGGATCTAGTCTCTTCGCGAATC 60.666 52.174 23.67 13.07 0.00 2.52
230 233 2.224549 CGGATCTAGTCTCTTCGCGAAT 59.775 50.000 23.67 9.72 0.00 3.34
231 234 1.598132 CGGATCTAGTCTCTTCGCGAA 59.402 52.381 22.01 22.01 0.00 4.70
232 235 1.202498 TCGGATCTAGTCTCTTCGCGA 60.202 52.381 3.71 3.71 0.00 5.87
233 236 1.193650 CTCGGATCTAGTCTCTTCGCG 59.806 57.143 0.00 0.00 0.00 5.87
234 237 2.222445 GTCTCGGATCTAGTCTCTTCGC 59.778 54.545 0.00 0.00 0.00 4.70
235 238 2.473609 CGTCTCGGATCTAGTCTCTTCG 59.526 54.545 0.00 0.00 0.00 3.79
236 239 2.222445 GCGTCTCGGATCTAGTCTCTTC 59.778 54.545 0.00 0.00 0.00 2.87
237 240 2.215196 GCGTCTCGGATCTAGTCTCTT 58.785 52.381 0.00 0.00 0.00 2.85
238 241 1.870580 CGCGTCTCGGATCTAGTCTCT 60.871 57.143 0.00 0.00 33.78 3.10
239 242 0.509499 CGCGTCTCGGATCTAGTCTC 59.491 60.000 0.00 0.00 33.78 3.36
240 243 0.104487 TCGCGTCTCGGATCTAGTCT 59.896 55.000 5.77 0.00 39.05 3.24
241 244 0.232816 GTCGCGTCTCGGATCTAGTC 59.767 60.000 5.77 0.00 39.05 2.59
242 245 1.159098 GGTCGCGTCTCGGATCTAGT 61.159 60.000 5.77 0.00 39.05 2.57
243 246 1.570475 GGTCGCGTCTCGGATCTAG 59.430 63.158 5.77 0.00 39.05 2.43
244 247 2.242572 CGGTCGCGTCTCGGATCTA 61.243 63.158 5.77 0.00 39.05 1.98
245 248 3.574445 CGGTCGCGTCTCGGATCT 61.574 66.667 5.77 0.00 39.05 2.75
246 249 3.509296 CTCGGTCGCGTCTCGGATC 62.509 68.421 5.77 0.00 39.05 3.36
247 250 3.574445 CTCGGTCGCGTCTCGGAT 61.574 66.667 5.77 0.00 39.05 4.18
248 251 4.747529 TCTCGGTCGCGTCTCGGA 62.748 66.667 5.77 7.32 39.05 4.55
249 252 3.574445 ATCTCGGTCGCGTCTCGG 61.574 66.667 5.77 3.11 39.05 4.63
250 253 2.351322 CATCTCGGTCGCGTCTCG 60.351 66.667 5.77 9.07 40.15 4.04
251 254 1.787057 ATCCATCTCGGTCGCGTCTC 61.787 60.000 5.77 0.00 35.57 3.36
252 255 1.384989 AATCCATCTCGGTCGCGTCT 61.385 55.000 5.77 0.00 35.57 4.18
253 256 1.065928 AATCCATCTCGGTCGCGTC 59.934 57.895 5.77 0.00 35.57 5.19
254 257 1.226974 CAATCCATCTCGGTCGCGT 60.227 57.895 5.77 0.00 35.57 6.01
255 258 2.589492 GCAATCCATCTCGGTCGCG 61.589 63.158 0.00 0.00 35.57 5.87
256 259 1.227380 AGCAATCCATCTCGGTCGC 60.227 57.895 0.00 0.00 35.57 5.19
257 260 0.179100 ACAGCAATCCATCTCGGTCG 60.179 55.000 0.00 0.00 35.57 4.79
258 261 1.293924 CACAGCAATCCATCTCGGTC 58.706 55.000 0.00 0.00 35.57 4.79
259 262 0.107508 CCACAGCAATCCATCTCGGT 60.108 55.000 0.00 0.00 35.57 4.69
260 263 0.178767 TCCACAGCAATCCATCTCGG 59.821 55.000 0.00 0.00 0.00 4.63
261 264 1.667724 GTTCCACAGCAATCCATCTCG 59.332 52.381 0.00 0.00 0.00 4.04
262 265 1.667724 CGTTCCACAGCAATCCATCTC 59.332 52.381 0.00 0.00 0.00 2.75
263 266 1.742761 CGTTCCACAGCAATCCATCT 58.257 50.000 0.00 0.00 0.00 2.90
264 267 0.099436 GCGTTCCACAGCAATCCATC 59.901 55.000 0.00 0.00 0.00 3.51
265 268 1.647545 CGCGTTCCACAGCAATCCAT 61.648 55.000 0.00 0.00 0.00 3.41
266 269 2.324330 CGCGTTCCACAGCAATCCA 61.324 57.895 0.00 0.00 0.00 3.41
267 270 2.480555 CGCGTTCCACAGCAATCC 59.519 61.111 0.00 0.00 0.00 3.01
268 271 1.573829 TTCCGCGTTCCACAGCAATC 61.574 55.000 4.92 0.00 0.00 2.67
269 272 0.960364 ATTCCGCGTTCCACAGCAAT 60.960 50.000 4.92 0.00 0.00 3.56
270 273 1.573829 GATTCCGCGTTCCACAGCAA 61.574 55.000 4.92 0.00 0.00 3.91
271 274 2.031919 ATTCCGCGTTCCACAGCA 59.968 55.556 4.92 0.00 0.00 4.41
272 275 1.298859 AAGATTCCGCGTTCCACAGC 61.299 55.000 4.92 0.00 0.00 4.40
273 276 1.156736 AAAGATTCCGCGTTCCACAG 58.843 50.000 4.92 0.00 0.00 3.66
274 277 1.600023 AAAAGATTCCGCGTTCCACA 58.400 45.000 4.92 0.00 0.00 4.17
275 278 2.287368 ACAAAAAGATTCCGCGTTCCAC 60.287 45.455 4.92 0.00 0.00 4.02
276 279 1.950909 ACAAAAAGATTCCGCGTTCCA 59.049 42.857 4.92 0.00 0.00 3.53
277 280 2.699251 ACAAAAAGATTCCGCGTTCC 57.301 45.000 4.92 0.00 0.00 3.62
278 281 5.209977 ACTTTACAAAAAGATTCCGCGTTC 58.790 37.500 4.92 0.00 44.14 3.95
279 282 5.177725 ACTTTACAAAAAGATTCCGCGTT 57.822 34.783 4.92 0.00 44.14 4.84
280 283 4.823790 ACTTTACAAAAAGATTCCGCGT 57.176 36.364 4.92 0.00 44.14 6.01
281 284 4.973663 ACAACTTTACAAAAAGATTCCGCG 59.026 37.500 0.00 0.00 44.14 6.46
282 285 6.822073 AACAACTTTACAAAAAGATTCCGC 57.178 33.333 4.95 0.00 44.14 5.54
283 286 9.683651 GAAAAACAACTTTACAAAAAGATTCCG 57.316 29.630 4.95 0.00 44.14 4.30
284 287 9.683651 CGAAAAACAACTTTACAAAAAGATTCC 57.316 29.630 4.95 0.00 44.14 3.01
287 290 8.580431 CGACGAAAAACAACTTTACAAAAAGAT 58.420 29.630 4.95 0.00 44.14 2.40
288 291 7.802251 TCGACGAAAAACAACTTTACAAAAAGA 59.198 29.630 0.00 0.00 44.14 2.52
289 292 7.930462 TCGACGAAAAACAACTTTACAAAAAG 58.070 30.769 0.00 0.00 46.34 2.27
290 293 7.848716 TCGACGAAAAACAACTTTACAAAAA 57.151 28.000 0.00 0.00 0.00 1.94
291 294 7.590689 AGTTCGACGAAAAACAACTTTACAAAA 59.409 29.630 12.67 0.00 0.00 2.44
292 295 7.059716 CAGTTCGACGAAAAACAACTTTACAAA 59.940 33.333 12.67 0.00 0.00 2.83
293 296 6.520447 CAGTTCGACGAAAAACAACTTTACAA 59.480 34.615 12.67 0.00 0.00 2.41
294 297 6.016718 CAGTTCGACGAAAAACAACTTTACA 58.983 36.000 12.67 0.00 0.00 2.41
295 298 6.242829 TCAGTTCGACGAAAAACAACTTTAC 58.757 36.000 12.67 0.00 0.00 2.01
296 299 6.406093 TCAGTTCGACGAAAAACAACTTTA 57.594 33.333 12.67 0.00 0.00 1.85
297 300 5.285798 TCAGTTCGACGAAAAACAACTTT 57.714 34.783 12.67 0.00 0.00 2.66
298 301 4.932268 TCAGTTCGACGAAAAACAACTT 57.068 36.364 12.67 0.00 0.00 2.66
299 302 4.932268 TTCAGTTCGACGAAAAACAACT 57.068 36.364 12.67 1.48 0.00 3.16
300 303 5.084055 AGTTTCAGTTCGACGAAAAACAAC 58.916 37.500 26.12 19.62 33.17 3.32
301 304 5.285798 AGTTTCAGTTCGACGAAAAACAA 57.714 34.783 26.12 11.95 33.17 2.83
302 305 4.932268 AGTTTCAGTTCGACGAAAAACA 57.068 36.364 26.12 7.59 33.17 2.83
303 306 7.709385 TTTTAGTTTCAGTTCGACGAAAAAC 57.291 32.000 20.78 20.78 33.17 2.43
338 341 3.590857 TTGCATTGCACGCCGTGT 61.591 55.556 19.57 0.00 38.71 4.49
339 342 3.098958 GTTGCATTGCACGCCGTG 61.099 61.111 13.95 13.95 38.71 4.94
340 343 4.681643 CGTTGCATTGCACGCCGT 62.682 61.111 11.66 0.00 38.71 5.68
343 346 3.951655 CTCCCGTTGCATTGCACGC 62.952 63.158 11.66 6.58 38.71 5.34
344 347 2.176546 CTCCCGTTGCATTGCACG 59.823 61.111 11.66 16.87 38.71 5.34
345 348 1.305219 TAGCTCCCGTTGCATTGCAC 61.305 55.000 11.66 6.03 38.71 4.57
346 349 1.002746 TAGCTCCCGTTGCATTGCA 60.003 52.632 7.38 7.38 36.47 4.08
347 350 1.723870 CTAGCTCCCGTTGCATTGC 59.276 57.895 0.46 0.46 0.00 3.56
348 351 0.745845 AGCTAGCTCCCGTTGCATTG 60.746 55.000 12.68 0.00 0.00 2.82
349 352 0.035056 AAGCTAGCTCCCGTTGCATT 60.035 50.000 19.65 0.00 0.00 3.56
350 353 0.745845 CAAGCTAGCTCCCGTTGCAT 60.746 55.000 19.65 0.00 0.00 3.96
351 354 1.375908 CAAGCTAGCTCCCGTTGCA 60.376 57.895 19.65 0.00 0.00 4.08
352 355 0.673644 TTCAAGCTAGCTCCCGTTGC 60.674 55.000 19.65 0.00 0.00 4.17
353 356 1.808411 TTTCAAGCTAGCTCCCGTTG 58.192 50.000 19.65 12.45 0.00 4.10
354 357 2.561478 TTTTCAAGCTAGCTCCCGTT 57.439 45.000 19.65 0.00 0.00 4.44
355 358 2.749621 CAATTTTCAAGCTAGCTCCCGT 59.250 45.455 19.65 0.00 0.00 5.28
356 359 3.009723 TCAATTTTCAAGCTAGCTCCCG 58.990 45.455 19.65 10.02 0.00 5.14
357 360 5.588958 ATTCAATTTTCAAGCTAGCTCCC 57.411 39.130 19.65 0.00 0.00 4.30
358 361 6.393171 ACAATTCAATTTTCAAGCTAGCTCC 58.607 36.000 19.65 0.00 0.00 4.70
359 362 7.880059 AACAATTCAATTTTCAAGCTAGCTC 57.120 32.000 19.65 0.00 0.00 4.09
360 363 9.415544 CTAAACAATTCAATTTTCAAGCTAGCT 57.584 29.630 12.68 12.68 0.00 3.32
361 364 8.650714 CCTAAACAATTCAATTTTCAAGCTAGC 58.349 33.333 6.62 6.62 0.00 3.42
362 365 8.650714 GCCTAAACAATTCAATTTTCAAGCTAG 58.349 33.333 0.00 0.00 0.00 3.42
363 366 8.147058 TGCCTAAACAATTCAATTTTCAAGCTA 58.853 29.630 0.00 0.00 0.00 3.32
364 367 6.991531 TGCCTAAACAATTCAATTTTCAAGCT 59.008 30.769 0.00 0.00 0.00 3.74
365 368 7.171337 TCTGCCTAAACAATTCAATTTTCAAGC 59.829 33.333 0.00 0.00 0.00 4.01
366 369 8.592105 TCTGCCTAAACAATTCAATTTTCAAG 57.408 30.769 0.00 0.00 0.00 3.02
367 370 8.954950 TTCTGCCTAAACAATTCAATTTTCAA 57.045 26.923 0.00 0.00 0.00 2.69
368 371 8.954950 TTTCTGCCTAAACAATTCAATTTTCA 57.045 26.923 0.00 0.00 0.00 2.69
387 390 8.277858 ACTGGTAAAGTGGTCAGATATTTCTGC 61.278 40.741 8.19 4.19 42.61 4.26
388 391 7.106239 ACTGGTAAAGTGGTCAGATATTTCTG 58.894 38.462 6.82 6.82 43.46 3.02
389 392 7.259088 ACTGGTAAAGTGGTCAGATATTTCT 57.741 36.000 0.00 0.00 37.88 2.52
390 393 7.201530 CGAACTGGTAAAGTGGTCAGATATTTC 60.202 40.741 0.00 0.00 39.81 2.17
391 394 6.594159 CGAACTGGTAAAGTGGTCAGATATTT 59.406 38.462 0.00 0.00 39.81 1.40
392 395 6.106673 CGAACTGGTAAAGTGGTCAGATATT 58.893 40.000 0.00 0.00 39.81 1.28
393 396 5.395324 CCGAACTGGTAAAGTGGTCAGATAT 60.395 44.000 0.00 0.00 39.81 1.63
394 397 4.081862 CCGAACTGGTAAAGTGGTCAGATA 60.082 45.833 0.00 0.00 39.81 1.98
395 398 3.306780 CCGAACTGGTAAAGTGGTCAGAT 60.307 47.826 0.00 0.00 39.81 2.90
396 399 2.036733 CCGAACTGGTAAAGTGGTCAGA 59.963 50.000 0.00 0.00 39.81 3.27
397 400 2.413837 CCGAACTGGTAAAGTGGTCAG 58.586 52.381 0.00 0.00 39.81 3.51
398 401 2.536761 CCGAACTGGTAAAGTGGTCA 57.463 50.000 0.00 0.00 39.81 4.02
409 412 2.483188 GGAGTGGCTATTACCGAACTGG 60.483 54.545 0.00 0.00 46.41 4.00
410 413 2.167693 TGGAGTGGCTATTACCGAACTG 59.832 50.000 0.00 0.00 0.00 3.16
411 414 2.167900 GTGGAGTGGCTATTACCGAACT 59.832 50.000 0.00 0.00 0.00 3.01
412 415 2.167900 AGTGGAGTGGCTATTACCGAAC 59.832 50.000 0.00 0.00 0.00 3.95
413 416 2.463752 AGTGGAGTGGCTATTACCGAA 58.536 47.619 0.00 0.00 0.00 4.30
414 417 2.154567 AGTGGAGTGGCTATTACCGA 57.845 50.000 0.00 0.00 0.00 4.69
415 418 2.936498 CAAAGTGGAGTGGCTATTACCG 59.064 50.000 0.00 0.00 0.00 4.02
416 419 3.951663 ACAAAGTGGAGTGGCTATTACC 58.048 45.455 0.00 0.00 0.00 2.85
417 420 4.092968 CGAACAAAGTGGAGTGGCTATTAC 59.907 45.833 0.00 0.00 0.00 1.89
418 421 4.250464 CGAACAAAGTGGAGTGGCTATTA 58.750 43.478 0.00 0.00 0.00 0.98
419 422 3.074412 CGAACAAAGTGGAGTGGCTATT 58.926 45.455 0.00 0.00 0.00 1.73
420 423 2.699954 CGAACAAAGTGGAGTGGCTAT 58.300 47.619 0.00 0.00 0.00 2.97
421 424 1.876416 GCGAACAAAGTGGAGTGGCTA 60.876 52.381 0.00 0.00 0.00 3.93
422 425 1.166531 GCGAACAAAGTGGAGTGGCT 61.167 55.000 0.00 0.00 0.00 4.75
423 426 1.282875 GCGAACAAAGTGGAGTGGC 59.717 57.895 0.00 0.00 0.00 5.01
424 427 1.069022 CATGCGAACAAAGTGGAGTGG 60.069 52.381 0.00 0.00 0.00 4.00
425 428 1.664016 GCATGCGAACAAAGTGGAGTG 60.664 52.381 0.00 0.00 0.00 3.51
426 429 0.593128 GCATGCGAACAAAGTGGAGT 59.407 50.000 0.00 0.00 0.00 3.85
427 430 0.592637 TGCATGCGAACAAAGTGGAG 59.407 50.000 14.09 0.00 0.00 3.86
428 431 1.068402 CATGCATGCGAACAAAGTGGA 60.068 47.619 14.93 0.00 0.00 4.02
429 432 1.342555 CATGCATGCGAACAAAGTGG 58.657 50.000 14.93 0.00 0.00 4.00
430 433 0.711670 GCATGCATGCGAACAAAGTG 59.288 50.000 33.99 3.34 44.67 3.16
431 434 3.111536 GCATGCATGCGAACAAAGT 57.888 47.368 33.99 0.00 44.67 2.66
441 444 5.639082 TGGAGATACGTATAAAGCATGCATG 59.361 40.000 22.70 22.70 0.00 4.06
442 445 5.793817 TGGAGATACGTATAAAGCATGCAT 58.206 37.500 21.98 4.57 0.00 3.96
443 446 5.208463 TGGAGATACGTATAAAGCATGCA 57.792 39.130 21.98 0.00 0.00 3.96
444 447 4.092091 GCTGGAGATACGTATAAAGCATGC 59.908 45.833 10.51 10.51 0.00 4.06
445 448 5.473931 AGCTGGAGATACGTATAAAGCATG 58.526 41.667 22.67 8.89 31.85 4.06
446 449 5.243954 TGAGCTGGAGATACGTATAAAGCAT 59.756 40.000 22.67 13.51 31.85 3.79
447 450 4.583073 TGAGCTGGAGATACGTATAAAGCA 59.417 41.667 22.67 9.14 31.85 3.91
448 451 4.918583 GTGAGCTGGAGATACGTATAAAGC 59.081 45.833 8.34 14.09 0.00 3.51
449 452 5.147865 CGTGAGCTGGAGATACGTATAAAG 58.852 45.833 8.34 5.15 0.00 1.85
450 453 5.104562 CGTGAGCTGGAGATACGTATAAA 57.895 43.478 8.34 0.00 0.00 1.40
451 454 4.744136 CGTGAGCTGGAGATACGTATAA 57.256 45.455 8.34 0.00 0.00 0.98
467 470 2.125350 GCAGGAAGGGAGCGTGAG 60.125 66.667 0.00 0.00 0.00 3.51
468 471 3.706373 GGCAGGAAGGGAGCGTGA 61.706 66.667 0.00 0.00 0.00 4.35
469 472 3.672295 GAGGCAGGAAGGGAGCGTG 62.672 68.421 0.00 0.00 0.00 5.34
470 473 3.394836 GAGGCAGGAAGGGAGCGT 61.395 66.667 0.00 0.00 0.00 5.07
471 474 2.657102 GATGAGGCAGGAAGGGAGCG 62.657 65.000 0.00 0.00 0.00 5.03
472 475 1.148048 GATGAGGCAGGAAGGGAGC 59.852 63.158 0.00 0.00 0.00 4.70
473 476 1.445095 CGATGAGGCAGGAAGGGAG 59.555 63.158 0.00 0.00 0.00 4.30
474 477 2.066393 CCGATGAGGCAGGAAGGGA 61.066 63.158 0.00 0.00 0.00 4.20
475 478 2.507944 CCGATGAGGCAGGAAGGG 59.492 66.667 0.00 0.00 0.00 3.95
476 479 2.066393 TCCCGATGAGGCAGGAAGG 61.066 63.158 0.00 0.00 39.21 3.46
477 480 1.144936 GTCCCGATGAGGCAGGAAG 59.855 63.158 0.00 0.00 39.21 3.46
478 481 1.198094 TTGTCCCGATGAGGCAGGAA 61.198 55.000 0.00 0.00 39.21 3.36
479 482 1.198094 TTTGTCCCGATGAGGCAGGA 61.198 55.000 0.00 0.00 39.21 3.86
480 483 0.745845 CTTTGTCCCGATGAGGCAGG 60.746 60.000 0.00 0.00 39.21 4.85
481 484 0.745845 CCTTTGTCCCGATGAGGCAG 60.746 60.000 0.00 0.00 39.21 4.85
482 485 1.198094 TCCTTTGTCCCGATGAGGCA 61.198 55.000 0.00 0.00 39.21 4.75
483 486 0.181350 ATCCTTTGTCCCGATGAGGC 59.819 55.000 0.00 0.00 39.21 4.70
484 487 4.067896 CAATATCCTTTGTCCCGATGAGG 58.932 47.826 0.00 0.00 40.63 3.86
485 488 3.499918 GCAATATCCTTTGTCCCGATGAG 59.500 47.826 0.00 0.00 0.00 2.90
486 489 3.136443 AGCAATATCCTTTGTCCCGATGA 59.864 43.478 0.00 0.00 0.00 2.92
487 490 3.480470 AGCAATATCCTTTGTCCCGATG 58.520 45.455 0.00 0.00 0.00 3.84
488 491 3.864789 AGCAATATCCTTTGTCCCGAT 57.135 42.857 0.00 0.00 0.00 4.18
489 492 4.974645 ATAGCAATATCCTTTGTCCCGA 57.025 40.909 0.00 0.00 0.00 5.14
490 493 6.316390 GGAATATAGCAATATCCTTTGTCCCG 59.684 42.308 0.00 0.00 0.00 5.14
491 494 7.175104 TGGAATATAGCAATATCCTTTGTCCC 58.825 38.462 0.00 0.00 0.00 4.46
492 495 8.635765 TTGGAATATAGCAATATCCTTTGTCC 57.364 34.615 0.00 0.00 0.00 4.02
493 496 9.289782 ACTTGGAATATAGCAATATCCTTTGTC 57.710 33.333 0.00 0.00 0.00 3.18
511 514 9.826574 TTCGCTACATAAAACTATACTTGGAAT 57.173 29.630 0.00 0.00 0.00 3.01
512 515 9.656040 TTTCGCTACATAAAACTATACTTGGAA 57.344 29.630 0.00 0.00 0.00 3.53
513 516 9.656040 TTTTCGCTACATAAAACTATACTTGGA 57.344 29.630 0.00 0.00 0.00 3.53
517 520 8.557029 GCCATTTTCGCTACATAAAACTATACT 58.443 33.333 0.00 0.00 0.00 2.12
518 521 8.557029 AGCCATTTTCGCTACATAAAACTATAC 58.443 33.333 0.00 0.00 33.91 1.47
519 522 8.556194 CAGCCATTTTCGCTACATAAAACTATA 58.444 33.333 0.00 0.00 33.91 1.31
520 523 7.067008 ACAGCCATTTTCGCTACATAAAACTAT 59.933 33.333 0.00 0.00 33.91 2.12
521 524 6.373216 ACAGCCATTTTCGCTACATAAAACTA 59.627 34.615 0.00 0.00 33.91 2.24
522 525 5.183140 ACAGCCATTTTCGCTACATAAAACT 59.817 36.000 0.00 0.00 33.91 2.66
523 526 5.286082 CACAGCCATTTTCGCTACATAAAAC 59.714 40.000 0.00 0.00 33.91 2.43
524 527 5.398169 CACAGCCATTTTCGCTACATAAAA 58.602 37.500 0.00 0.00 33.91 1.52
525 528 4.142491 CCACAGCCATTTTCGCTACATAAA 60.142 41.667 0.00 0.00 33.91 1.40
526 529 3.376859 CCACAGCCATTTTCGCTACATAA 59.623 43.478 0.00 0.00 33.91 1.90
527 530 2.942376 CCACAGCCATTTTCGCTACATA 59.058 45.455 0.00 0.00 33.91 2.29
528 531 1.745087 CCACAGCCATTTTCGCTACAT 59.255 47.619 0.00 0.00 33.91 2.29
529 532 1.164411 CCACAGCCATTTTCGCTACA 58.836 50.000 0.00 0.00 33.91 2.74
530 533 0.451783 CCCACAGCCATTTTCGCTAC 59.548 55.000 0.00 0.00 33.91 3.58
531 534 1.312371 GCCCACAGCCATTTTCGCTA 61.312 55.000 0.00 0.00 33.91 4.26
532 535 2.639327 GCCCACAGCCATTTTCGCT 61.639 57.895 0.00 0.00 36.91 4.93
533 536 2.125952 GCCCACAGCCATTTTCGC 60.126 61.111 0.00 0.00 34.35 4.70
534 537 1.080569 GTGCCCACAGCCATTTTCG 60.081 57.895 0.00 0.00 42.71 3.46
535 538 1.080569 CGTGCCCACAGCCATTTTC 60.081 57.895 0.00 0.00 42.71 2.29
536 539 0.538516 TACGTGCCCACAGCCATTTT 60.539 50.000 0.00 0.00 42.71 1.82
537 540 1.074072 TACGTGCCCACAGCCATTT 59.926 52.632 0.00 0.00 42.71 2.32
538 541 1.674322 GTACGTGCCCACAGCCATT 60.674 57.895 0.00 0.00 42.71 3.16
539 542 2.046314 GTACGTGCCCACAGCCAT 60.046 61.111 0.00 0.00 42.71 4.40
540 543 4.673298 CGTACGTGCCCACAGCCA 62.673 66.667 7.22 0.00 42.71 4.75
541 544 3.285523 TACGTACGTGCCCACAGCC 62.286 63.158 30.25 0.00 42.71 4.85
542 545 2.090524 GTACGTACGTGCCCACAGC 61.091 63.158 30.25 6.72 44.14 4.40
543 546 1.798725 CGTACGTACGTGCCCACAG 60.799 63.158 33.95 12.12 44.13 3.66
544 547 2.254951 CGTACGTACGTGCCCACA 59.745 61.111 33.95 6.69 44.13 4.17
553 556 2.595386 CACCCAAACCTACGTACGTAC 58.405 52.381 23.60 15.90 0.00 3.67
554 557 1.543802 CCACCCAAACCTACGTACGTA 59.456 52.381 25.41 25.41 0.00 3.57
555 558 0.318120 CCACCCAAACCTACGTACGT 59.682 55.000 25.98 25.98 0.00 3.57
556 559 1.015607 GCCACCCAAACCTACGTACG 61.016 60.000 15.01 15.01 0.00 3.67
557 560 1.015607 CGCCACCCAAACCTACGTAC 61.016 60.000 0.00 0.00 0.00 3.67
558 561 1.292860 CGCCACCCAAACCTACGTA 59.707 57.895 0.00 0.00 0.00 3.57
559 562 2.031465 CGCCACCCAAACCTACGT 59.969 61.111 0.00 0.00 0.00 3.57
560 563 3.428282 GCGCCACCCAAACCTACG 61.428 66.667 0.00 0.00 0.00 3.51
561 564 2.281900 TGCGCCACCCAAACCTAC 60.282 61.111 4.18 0.00 0.00 3.18
562 565 2.281900 GTGCGCCACCCAAACCTA 60.282 61.111 4.18 0.00 0.00 3.08
563 566 4.514585 TGTGCGCCACCCAAACCT 62.515 61.111 4.18 0.00 32.73 3.50
564 567 3.532155 TTGTGCGCCACCCAAACC 61.532 61.111 4.18 0.00 32.73 3.27
565 568 2.279186 GTTGTGCGCCACCCAAAC 60.279 61.111 4.18 0.00 32.73 2.93
566 569 2.755876 TGTTGTGCGCCACCCAAA 60.756 55.556 4.18 0.00 32.73 3.28
567 570 3.215568 CTGTTGTGCGCCACCCAA 61.216 61.111 4.18 0.00 32.73 4.12
570 573 4.629115 GTGCTGTTGTGCGCCACC 62.629 66.667 4.18 0.00 37.48 4.61
571 574 3.408501 TTGTGCTGTTGTGCGCCAC 62.409 57.895 4.18 4.11 42.20 5.01
572 575 3.123523 CTTGTGCTGTTGTGCGCCA 62.124 57.895 4.18 0.00 42.20 5.69
573 576 2.353839 CTTGTGCTGTTGTGCGCC 60.354 61.111 4.18 0.00 42.20 6.53
574 577 2.353839 CCTTGTGCTGTTGTGCGC 60.354 61.111 0.00 0.00 43.07 6.09
575 578 2.332514 CCCTTGTGCTGTTGTGCG 59.667 61.111 0.00 0.00 35.36 5.34
576 579 1.181098 ATCCCCTTGTGCTGTTGTGC 61.181 55.000 0.00 0.00 0.00 4.57
577 580 0.883833 GATCCCCTTGTGCTGTTGTG 59.116 55.000 0.00 0.00 0.00 3.33
578 581 0.606401 CGATCCCCTTGTGCTGTTGT 60.606 55.000 0.00 0.00 0.00 3.32
579 582 0.321564 TCGATCCCCTTGTGCTGTTG 60.322 55.000 0.00 0.00 0.00 3.33
580 583 0.400213 TTCGATCCCCTTGTGCTGTT 59.600 50.000 0.00 0.00 0.00 3.16
581 584 0.400213 TTTCGATCCCCTTGTGCTGT 59.600 50.000 0.00 0.00 0.00 4.40
582 585 1.755179 ATTTCGATCCCCTTGTGCTG 58.245 50.000 0.00 0.00 0.00 4.41
583 586 2.094675 CAATTTCGATCCCCTTGTGCT 58.905 47.619 0.00 0.00 0.00 4.40
584 587 1.469767 GCAATTTCGATCCCCTTGTGC 60.470 52.381 0.00 0.00 0.00 4.57
585 588 1.202177 CGCAATTTCGATCCCCTTGTG 60.202 52.381 0.00 0.00 0.00 3.33
586 589 1.094785 CGCAATTTCGATCCCCTTGT 58.905 50.000 0.00 0.00 0.00 3.16
587 590 0.248621 GCGCAATTTCGATCCCCTTG 60.249 55.000 0.30 0.00 0.00 3.61
588 591 1.384222 GGCGCAATTTCGATCCCCTT 61.384 55.000 10.83 0.00 0.00 3.95
589 592 1.823899 GGCGCAATTTCGATCCCCT 60.824 57.895 10.83 0.00 0.00 4.79
590 593 1.823899 AGGCGCAATTTCGATCCCC 60.824 57.895 10.83 0.00 0.00 4.81
591 594 1.356624 CAGGCGCAATTTCGATCCC 59.643 57.895 10.83 0.00 0.00 3.85
592 595 1.298638 GCAGGCGCAATTTCGATCC 60.299 57.895 10.83 0.00 38.36 3.36
593 596 4.292008 GCAGGCGCAATTTCGATC 57.708 55.556 10.83 0.00 38.36 3.69
610 613 3.133362 ACCTCAAATTATTGGCATGCCTG 59.867 43.478 35.53 23.51 37.15 4.85
611 614 3.377573 ACCTCAAATTATTGGCATGCCT 58.622 40.909 35.53 20.42 37.15 4.75
612 615 3.825143 ACCTCAAATTATTGGCATGCC 57.175 42.857 30.54 30.54 37.15 4.40
613 616 6.587608 GCTATTACCTCAAATTATTGGCATGC 59.412 38.462 9.90 9.90 37.15 4.06
614 617 7.660112 TGCTATTACCTCAAATTATTGGCATG 58.340 34.615 0.00 0.00 37.15 4.06
615 618 7.838079 TGCTATTACCTCAAATTATTGGCAT 57.162 32.000 0.00 0.00 37.15 4.40
616 619 7.505248 TGATGCTATTACCTCAAATTATTGGCA 59.495 33.333 0.00 0.00 37.15 4.92
617 620 7.885297 TGATGCTATTACCTCAAATTATTGGC 58.115 34.615 0.00 0.00 37.15 4.52
618 621 8.517878 CCTGATGCTATTACCTCAAATTATTGG 58.482 37.037 0.00 0.00 37.15 3.16
619 622 9.288576 TCCTGATGCTATTACCTCAAATTATTG 57.711 33.333 0.00 0.00 37.92 1.90
620 623 9.512588 CTCCTGATGCTATTACCTCAAATTATT 57.487 33.333 0.00 0.00 0.00 1.40
621 624 8.664079 ACTCCTGATGCTATTACCTCAAATTAT 58.336 33.333 0.00 0.00 0.00 1.28
656 659 3.691118 CCAAATCGTCACATCCAAGACAT 59.309 43.478 0.00 0.00 34.48 3.06
661 664 2.432444 GGACCAAATCGTCACATCCAA 58.568 47.619 0.00 0.00 34.24 3.53
797 801 3.853104 GGGGGTAAATGCAAAAGGC 57.147 52.632 0.00 0.00 45.13 4.35
864 874 6.584950 AGAATATCCCAGGAATATACCCAGT 58.415 40.000 0.00 0.00 0.00 4.00
899 909 2.175202 AGATGAGTGAGTGGAGTGGAC 58.825 52.381 0.00 0.00 0.00 4.02
1160 1181 3.580022 TCTCCACTCAGAGCAGAAAATGA 59.420 43.478 0.00 0.00 33.66 2.57
1242 1263 4.214971 CCACTGTCAACTGATTCAAAGGAG 59.785 45.833 0.00 0.00 0.00 3.69
1508 1552 7.887996 TTTTAGATAAATGGCAAAGCTTGTG 57.112 32.000 0.00 1.84 0.00 3.33
1580 1624 2.885554 GCCATTCAGGGTCAATCCACTT 60.886 50.000 0.00 0.00 38.09 3.16
1841 2008 5.349270 CAGACATCTTCTTCTTCTCAAGCTG 59.651 44.000 0.00 0.00 28.96 4.24
2413 3708 8.349983 ACATCTTCAGTTTAACACATGTTAACC 58.650 33.333 15.14 9.72 46.48 2.85
2703 4317 1.771565 ATTGCTGCTGTGTATGGCAT 58.228 45.000 4.88 4.88 37.83 4.40
2705 4319 3.996150 AATATTGCTGCTGTGTATGGC 57.004 42.857 0.00 0.00 0.00 4.40
2706 4320 6.260714 TCACTAAATATTGCTGCTGTGTATGG 59.739 38.462 0.00 0.00 0.00 2.74
2707 4321 7.250445 TCACTAAATATTGCTGCTGTGTATG 57.750 36.000 0.00 0.00 0.00 2.39
2708 4322 7.864108 TTCACTAAATATTGCTGCTGTGTAT 57.136 32.000 0.00 0.00 0.00 2.29
2711 4325 8.019669 GGATATTCACTAAATATTGCTGCTGTG 58.980 37.037 0.00 0.00 40.03 3.66
2712 4326 7.720957 TGGATATTCACTAAATATTGCTGCTGT 59.279 33.333 0.00 0.00 40.03 4.40
2713 4327 8.102800 TGGATATTCACTAAATATTGCTGCTG 57.897 34.615 0.00 0.00 40.03 4.41
2714 4328 7.941238 ACTGGATATTCACTAAATATTGCTGCT 59.059 33.333 0.00 0.00 40.03 4.24
2715 4329 8.103948 ACTGGATATTCACTAAATATTGCTGC 57.896 34.615 0.00 0.00 40.03 5.25
2717 4331 9.851686 TGAACTGGATATTCACTAAATATTGCT 57.148 29.630 0.00 0.00 40.03 3.91
2733 4347 9.513906 TGAAACAAATATTCAGTGAACTGGATA 57.486 29.630 12.75 12.75 45.65 2.59
2735 4349 7.815840 TGAAACAAATATTCAGTGAACTGGA 57.184 32.000 7.96 1.95 43.91 3.86
2765 4379 9.238368 TGCTGCTGTAGGTTTAACTATTTTTAT 57.762 29.630 0.00 0.00 0.00 1.40
2772 4386 6.234920 TGAATTGCTGCTGTAGGTTTAACTA 58.765 36.000 0.00 0.00 0.00 2.24
2907 4521 2.793232 GCTGCTATGCTTGCTATTTTGC 59.207 45.455 0.00 0.00 0.00 3.68
2947 4561 9.346005 TGTTGAAACTTATGCTATGATGATCAT 57.654 29.630 13.10 13.10 40.72 2.45
2976 4611 4.036498 AGTTATGCTTGATCTGCTGCAATC 59.964 41.667 3.02 10.27 38.96 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.