Multiple sequence alignment - TraesCS7B01G365100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G365100 chr7B 100.000 5597 0 0 1 5597 628470622 628465026 0.000000e+00 10336.0
1 TraesCS7B01G365100 chr7B 96.313 217 6 2 1 215 628478132 628477916 6.900000e-94 355.0
2 TraesCS7B01G365100 chr7B 95.370 216 9 1 1 215 130316233 130316448 5.370000e-90 342.0
3 TraesCS7B01G365100 chr7B 100.000 33 0 0 4788 4820 588889146 588889178 1.680000e-05 62.1
4 TraesCS7B01G365100 chr7A 94.822 4867 195 17 751 5597 661169548 661164719 0.000000e+00 7539.0
5 TraesCS7B01G365100 chr7A 80.378 2278 396 34 2386 4650 732506015 732508254 0.000000e+00 1683.0
6 TraesCS7B01G365100 chr7A 78.125 832 157 19 997 1811 732505042 732505865 6.470000e-139 505.0
7 TraesCS7B01G365100 chr7A 87.143 70 8 1 4796 4864 134513104 134513035 1.670000e-10 78.7
8 TraesCS7B01G365100 chr7A 95.122 41 2 0 2052 2092 684005307 684005267 1.300000e-06 65.8
9 TraesCS7B01G365100 chr7A 93.182 44 1 2 2054 2097 618238913 618238872 4.680000e-06 63.9
10 TraesCS7B01G365100 chr7D 93.915 2498 142 3 2194 4683 571884472 571881977 0.000000e+00 3762.0
11 TraesCS7B01G365100 chr7D 89.420 1380 91 25 523 1875 571885902 571884551 0.000000e+00 1688.0
12 TraesCS7B01G365100 chr7D 88.275 742 78 3 4865 5597 571881904 571881163 0.000000e+00 880.0
13 TraesCS7B01G365100 chr7D 85.955 178 18 5 228 402 610798183 610798010 3.440000e-42 183.0
14 TraesCS7B01G365100 chr7D 90.789 76 7 0 4789 4864 401715644 401715569 9.920000e-18 102.0
15 TraesCS7B01G365100 chr7D 93.182 44 1 2 2054 2097 52378030 52377989 4.680000e-06 63.9
16 TraesCS7B01G365100 chr7D 96.970 33 1 0 4788 4820 631996612 631996644 7.830000e-04 56.5
17 TraesCS7B01G365100 chr6B 81.427 2046 359 15 2491 4530 8345081 8343051 0.000000e+00 1653.0
18 TraesCS7B01G365100 chr6B 81.378 2046 360 15 2491 4530 8354727 8352697 0.000000e+00 1648.0
19 TraesCS7B01G365100 chr6B 81.378 2046 360 15 2491 4530 8364373 8362343 0.000000e+00 1648.0
20 TraesCS7B01G365100 chr6B 79.799 2188 410 24 2502 4678 25815662 25813496 0.000000e+00 1563.0
21 TraesCS7B01G365100 chrUn 81.378 2046 360 15 2491 4530 343350500 343348470 0.000000e+00 1648.0
22 TraesCS7B01G365100 chrUn 97.222 216 5 1 1 215 472034009 472034224 1.150000e-96 364.0
23 TraesCS7B01G365100 chrUn 97.059 102 3 0 226 327 37160923 37160822 7.450000e-39 172.0
24 TraesCS7B01G365100 chrUn 90.123 81 8 0 329 409 38594655 38594575 7.670000e-19 106.0
25 TraesCS7B01G365100 chrUn 97.368 38 1 0 2058 2095 49409015 49408978 1.300000e-06 65.8
26 TraesCS7B01G365100 chrUn 97.368 38 1 0 2058 2095 292134849 292134812 1.300000e-06 65.8
27 TraesCS7B01G365100 chrUn 97.368 38 1 0 2058 2095 324145050 324145087 1.300000e-06 65.8
28 TraesCS7B01G365100 chrUn 97.368 38 1 0 2058 2095 404380190 404380227 1.300000e-06 65.8
29 TraesCS7B01G365100 chrUn 92.857 42 3 0 2058 2099 79350292 79350251 1.680000e-05 62.1
30 TraesCS7B01G365100 chrUn 95.000 40 1 1 2058 2097 79357011 79356973 1.680000e-05 62.1
31 TraesCS7B01G365100 chrUn 92.857 42 3 0 2058 2099 79360699 79360658 1.680000e-05 62.1
32 TraesCS7B01G365100 chrUn 95.000 40 1 1 2058 2097 79366994 79366956 1.680000e-05 62.1
33 TraesCS7B01G365100 chrUn 97.222 36 1 0 2058 2093 429494644 429494679 1.680000e-05 62.1
34 TraesCS7B01G365100 chr3A 79.527 2242 408 42 2443 4663 8573353 8575564 0.000000e+00 1550.0
35 TraesCS7B01G365100 chr3A 83.628 226 18 7 226 441 609957983 609958199 1.590000e-45 195.0
36 TraesCS7B01G365100 chr3B 97.222 216 5 1 1 215 159556991 159556776 1.150000e-96 364.0
37 TraesCS7B01G365100 chr3B 95.872 218 6 2 1 215 159544539 159544322 3.210000e-92 350.0
38 TraesCS7B01G365100 chr3B 97.087 206 5 1 1 205 159553779 159553574 4.150000e-91 346.0
39 TraesCS7B01G365100 chr3B 95.238 42 1 1 2054 2095 737461272 737461312 1.300000e-06 65.8
40 TraesCS7B01G365100 chr3B 95.238 42 1 1 2058 2099 821099297 821099337 1.300000e-06 65.8
41 TraesCS7B01G365100 chr3B 100.000 30 0 0 4789 4818 31100329 31100358 7.830000e-04 56.5
42 TraesCS7B01G365100 chr2B 95.370 216 9 1 1 215 526313730 526313945 5.370000e-90 342.0
43 TraesCS7B01G365100 chr2B 95.652 46 1 1 2055 2099 789867209 789867254 7.780000e-09 73.1
44 TraesCS7B01G365100 chr2B 95.238 42 0 2 2054 2095 34041370 34041331 1.300000e-06 65.8
45 TraesCS7B01G365100 chr1B 95.370 216 9 1 1 215 394378658 394378443 5.370000e-90 342.0
46 TraesCS7B01G365100 chr1B 95.370 216 8 2 1 215 516198055 516198269 5.370000e-90 342.0
47 TraesCS7B01G365100 chr1B 85.326 184 25 1 226 409 357220861 357220680 7.400000e-44 189.0
48 TraesCS7B01G365100 chr1B 87.654 81 8 2 329 409 677123648 677123570 5.970000e-15 93.5
49 TraesCS7B01G365100 chr4B 90.566 159 10 2 226 380 159546473 159546630 7.350000e-49 206.0
50 TraesCS7B01G365100 chr4B 87.640 89 10 1 322 409 603509678 603509590 9.920000e-18 102.0
51 TraesCS7B01G365100 chr5D 85.326 184 20 6 229 409 544282449 544282270 3.440000e-42 183.0
52 TraesCS7B01G365100 chr5D 86.250 80 10 1 4785 4864 481255628 481255550 9.990000e-13 86.1
53 TraesCS7B01G365100 chr5D 100.000 36 0 0 4829 4864 529450236 529450201 3.620000e-07 67.6
54 TraesCS7B01G365100 chr5D 95.122 41 2 0 2053 2093 9123163 9123203 1.300000e-06 65.8
55 TraesCS7B01G365100 chr5D 88.462 52 4 2 2053 2104 321587377 321587328 1.680000e-05 62.1
56 TraesCS7B01G365100 chr5D 93.023 43 1 2 2049 2091 552737557 552737597 1.680000e-05 62.1
57 TraesCS7B01G365100 chr5A 97.059 102 3 0 226 327 81453434 81453333 7.450000e-39 172.0
58 TraesCS7B01G365100 chr2A 96.190 105 4 0 223 327 434579980 434580084 7.450000e-39 172.0
59 TraesCS7B01G365100 chr2A 95.000 40 2 0 4825 4864 552492955 552492994 4.680000e-06 63.9
60 TraesCS7B01G365100 chr2A 93.182 44 2 1 2052 2095 651993823 651993781 4.680000e-06 63.9
61 TraesCS7B01G365100 chr4A 86.624 157 15 3 242 394 585555995 585556149 9.640000e-38 169.0
62 TraesCS7B01G365100 chr4A 94.737 38 2 0 4781 4818 674618619 674618656 6.060000e-05 60.2
63 TraesCS7B01G365100 chr1D 89.041 73 7 1 331 403 296484061 296484132 7.720000e-14 89.8
64 TraesCS7B01G365100 chr1D 93.182 44 1 2 2049 2091 410457724 410457682 4.680000e-06 63.9
65 TraesCS7B01G365100 chr1A 96.226 53 2 0 2139 2191 11741571 11741623 2.780000e-13 87.9
66 TraesCS7B01G365100 chr1A 83.333 90 5 9 2058 2139 439619029 439619116 2.160000e-09 75.0
67 TraesCS7B01G365100 chr6D 95.652 46 2 0 2140 2185 415404681 415404636 2.160000e-09 75.0
68 TraesCS7B01G365100 chr6D 91.111 45 2 2 2050 2092 67564289 67564333 6.060000e-05 60.2
69 TraesCS7B01G365100 chr6D 91.111 45 2 2 2050 2092 369425237 369425281 6.060000e-05 60.2
70 TraesCS7B01G365100 chr5B 97.500 40 1 0 4782 4821 351484934 351484895 1.010000e-07 69.4
71 TraesCS7B01G365100 chr5B 100.000 36 0 0 4829 4864 460676326 460676361 3.620000e-07 67.6
72 TraesCS7B01G365100 chr5B 93.182 44 1 2 2054 2097 678169326 678169285 4.680000e-06 63.9
73 TraesCS7B01G365100 chr4D 93.478 46 0 3 2052 2097 400168883 400168841 1.300000e-06 65.8
74 TraesCS7B01G365100 chr4D 91.111 45 2 2 2050 2092 64581121 64581165 6.060000e-05 60.2
75 TraesCS7B01G365100 chr3D 95.238 42 1 1 2058 2099 609938705 609938745 1.300000e-06 65.8
76 TraesCS7B01G365100 chr2D 91.667 48 3 1 4827 4873 638137160 638137207 1.300000e-06 65.8
77 TraesCS7B01G365100 chr2D 97.297 37 1 0 4828 4864 434358195 434358159 4.680000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G365100 chr7B 628465026 628470622 5596 True 10336 10336 100.000000 1 5597 1 chr7B.!!$R1 5596
1 TraesCS7B01G365100 chr7A 661164719 661169548 4829 True 7539 7539 94.822000 751 5597 1 chr7A.!!$R3 4846
2 TraesCS7B01G365100 chr7A 732505042 732508254 3212 False 1094 1683 79.251500 997 4650 2 chr7A.!!$F1 3653
3 TraesCS7B01G365100 chr7D 571881163 571885902 4739 True 2110 3762 90.536667 523 5597 3 chr7D.!!$R4 5074
4 TraesCS7B01G365100 chr6B 8343051 8345081 2030 True 1653 1653 81.427000 2491 4530 1 chr6B.!!$R1 2039
5 TraesCS7B01G365100 chr6B 8352697 8354727 2030 True 1648 1648 81.378000 2491 4530 1 chr6B.!!$R2 2039
6 TraesCS7B01G365100 chr6B 8362343 8364373 2030 True 1648 1648 81.378000 2491 4530 1 chr6B.!!$R3 2039
7 TraesCS7B01G365100 chr6B 25813496 25815662 2166 True 1563 1563 79.799000 2502 4678 1 chr6B.!!$R4 2176
8 TraesCS7B01G365100 chrUn 343348470 343350500 2030 True 1648 1648 81.378000 2491 4530 1 chrUn.!!$R7 2039
9 TraesCS7B01G365100 chr3A 8573353 8575564 2211 False 1550 1550 79.527000 2443 4663 1 chr3A.!!$F1 2220
10 TraesCS7B01G365100 chr3B 159553574 159556991 3417 True 355 364 97.154500 1 215 2 chr3B.!!$R2 214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 539 0.032130 GAGTTGCTGTCGGTGTCTCA 59.968 55.0 0.00 0.0 0.0 3.27 F
616 618 0.106149 GTATGCGTTAGTGGGAGGGG 59.894 60.0 0.00 0.0 0.0 4.79 F
727 735 0.319040 GTCAGCACGCTTCACTCTCA 60.319 55.0 0.00 0.0 0.0 3.27 F
733 745 0.603569 ACGCTTCACTCTCACCGAAT 59.396 50.0 0.00 0.0 0.0 3.34 F
1788 2554 0.753479 ACCTCATCCGCGATCTCAGT 60.753 55.0 8.23 0.0 0.0 3.41 F
2130 2897 0.826715 GAGCACACATCTGGCCTCTA 59.173 55.0 3.32 0.0 0.0 2.43 F
3860 4661 0.322975 GCTCTGGCCTCTTCACTTGA 59.677 55.0 3.32 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2677 0.109827 TAATTCCACGAACGTCGCGA 60.110 50.000 3.71 3.71 45.12 5.87 R
2106 2873 0.321034 GCCAGATGTGTGCTCACTGA 60.321 55.000 18.85 1.07 44.14 3.41 R
2109 2876 1.002868 AGGCCAGATGTGTGCTCAC 60.003 57.895 11.94 11.94 44.08 3.51 R
2622 3408 1.144936 GCATGCCCGAGCTACTTCT 59.855 57.895 6.36 0.00 40.80 2.85 R
3612 4413 0.672401 GAAGGCGAACAATGTCCGGA 60.672 55.000 0.00 0.00 0.00 5.14 R
3949 4753 1.830477 CCTCTCAAGGAAGACTGGAGG 59.170 57.143 0.00 0.00 45.80 4.30 R
5524 7208 0.394080 GAGCCCAGAAGCATGCTCTT 60.394 55.000 22.93 6.03 45.21 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 2.032681 GCAGAAGGGTTCGCACCT 59.967 61.111 3.73 0.00 43.65 4.00
107 109 2.185387 GTAGGGCTGTTACTTCCTCCA 58.815 52.381 0.00 0.00 0.00 3.86
160 162 6.318144 GTGTGTACAACTACTCCATAGCTAGA 59.682 42.308 0.00 0.00 33.73 2.43
168 170 5.835819 ACTACTCCATAGCTAGAATCTTGCA 59.164 40.000 17.96 5.56 34.89 4.08
177 179 6.100404 AGCTAGAATCTTGCATCTCCTTAG 57.900 41.667 17.96 0.00 34.89 2.18
215 217 3.243301 TGTCAGACTTAGAACCACGACAC 60.243 47.826 1.31 0.00 0.00 3.67
216 218 2.295349 TCAGACTTAGAACCACGACACC 59.705 50.000 0.00 0.00 0.00 4.16
219 221 1.270147 ACTTAGAACCACGACACCTGC 60.270 52.381 0.00 0.00 0.00 4.85
222 224 3.509137 GAACCACGACACCTGCCGA 62.509 63.158 0.00 0.00 0.00 5.54
223 225 2.781595 GAACCACGACACCTGCCGAT 62.782 60.000 0.00 0.00 0.00 4.18
225 227 2.509336 CACGACACCTGCCGATCC 60.509 66.667 0.00 0.00 0.00 3.36
226 228 2.994995 ACGACACCTGCCGATCCA 60.995 61.111 0.00 0.00 0.00 3.41
228 230 2.662596 GACACCTGCCGATCCACA 59.337 61.111 0.00 0.00 0.00 4.17
229 231 1.003839 GACACCTGCCGATCCACAA 60.004 57.895 0.00 0.00 0.00 3.33
231 233 2.045926 ACCTGCCGATCCACAAGC 60.046 61.111 0.00 0.00 0.00 4.01
233 235 3.869272 CTGCCGATCCACAAGCGC 61.869 66.667 0.00 0.00 34.82 5.92
234 236 4.393155 TGCCGATCCACAAGCGCT 62.393 61.111 2.64 2.64 34.82 5.92
235 237 3.567797 GCCGATCCACAAGCGCTC 61.568 66.667 12.06 0.00 34.82 5.03
236 238 2.125552 CCGATCCACAAGCGCTCA 60.126 61.111 12.06 0.00 34.82 4.26
237 239 1.522355 CCGATCCACAAGCGCTCAT 60.522 57.895 12.06 0.00 34.82 2.90
238 240 0.249447 CCGATCCACAAGCGCTCATA 60.249 55.000 12.06 0.00 34.82 2.15
239 241 1.606480 CCGATCCACAAGCGCTCATAT 60.606 52.381 12.06 0.00 34.82 1.78
240 242 2.352715 CCGATCCACAAGCGCTCATATA 60.353 50.000 12.06 0.00 34.82 0.86
242 244 3.653344 GATCCACAAGCGCTCATATACA 58.347 45.455 12.06 0.00 0.00 2.29
243 245 2.821546 TCCACAAGCGCTCATATACAC 58.178 47.619 12.06 0.00 0.00 2.90
244 246 1.522676 CCACAAGCGCTCATATACACG 59.477 52.381 12.06 0.00 0.00 4.49
249 251 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
250 252 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
251 253 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
253 255 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
255 257 4.719040 CTCATATACACGCGCATACACTA 58.281 43.478 5.73 0.00 0.00 2.74
256 258 5.110940 TCATATACACGCGCATACACTAA 57.889 39.130 5.73 0.00 0.00 2.24
257 259 5.705902 TCATATACACGCGCATACACTAAT 58.294 37.500 5.73 0.00 0.00 1.73
258 260 5.798434 TCATATACACGCGCATACACTAATC 59.202 40.000 5.73 0.00 0.00 1.75
259 261 1.567504 ACACGCGCATACACTAATCC 58.432 50.000 5.73 0.00 0.00 3.01
260 262 0.859232 CACGCGCATACACTAATCCC 59.141 55.000 5.73 0.00 0.00 3.85
261 263 0.750850 ACGCGCATACACTAATCCCT 59.249 50.000 5.73 0.00 0.00 4.20
262 264 1.958579 ACGCGCATACACTAATCCCTA 59.041 47.619 5.73 0.00 0.00 3.53
265 267 3.366985 CGCGCATACACTAATCCCTATGA 60.367 47.826 8.75 0.00 0.00 2.15
267 269 4.389077 GCGCATACACTAATCCCTATGAAC 59.611 45.833 0.30 0.00 0.00 3.18
268 270 4.621460 CGCATACACTAATCCCTATGAACG 59.379 45.833 0.00 0.00 0.00 3.95
269 271 4.389077 GCATACACTAATCCCTATGAACGC 59.611 45.833 0.00 0.00 0.00 4.84
270 272 5.538118 CATACACTAATCCCTATGAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
271 273 3.793559 ACACTAATCCCTATGAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
272 274 3.196901 ACACTAATCCCTATGAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
273 275 3.555956 CACTAATCCCTATGAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
274 276 2.779755 AATCCCTATGAACGCACACA 57.220 45.000 0.00 0.00 0.00 3.72
275 277 2.024176 ATCCCTATGAACGCACACAC 57.976 50.000 0.00 0.00 0.00 3.82
276 278 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
277 279 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
278 280 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
280 282 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
282 284 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
286 288 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
288 290 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
289 291 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
290 292 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
291 293 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
293 295 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
294 296 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
295 297 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
296 298 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
298 300 1.837499 ACCCTACCCCTATGAGCGC 60.837 63.158 0.00 0.00 0.00 5.92
299 301 2.584391 CCCTACCCCTATGAGCGCC 61.584 68.421 2.29 0.00 0.00 6.53
300 302 1.534235 CCTACCCCTATGAGCGCCT 60.534 63.158 2.29 0.00 0.00 5.52
301 303 1.536943 CCTACCCCTATGAGCGCCTC 61.537 65.000 2.29 1.22 0.00 4.70
302 304 1.533273 TACCCCTATGAGCGCCTCC 60.533 63.158 2.29 0.00 0.00 4.30
304 306 2.912542 CCCTATGAGCGCCTCCGA 60.913 66.667 2.29 0.00 36.29 4.55
305 307 2.498941 CCCTATGAGCGCCTCCGAA 61.499 63.158 2.29 0.00 36.29 4.30
306 308 1.441729 CCTATGAGCGCCTCCGAAA 59.558 57.895 2.29 0.00 36.29 3.46
307 309 0.598680 CCTATGAGCGCCTCCGAAAG 60.599 60.000 2.29 0.00 36.29 2.62
308 310 0.385751 CTATGAGCGCCTCCGAAAGA 59.614 55.000 2.29 0.00 36.29 2.52
309 311 0.102481 TATGAGCGCCTCCGAAAGAC 59.898 55.000 2.29 0.00 36.29 3.01
311 313 1.807573 GAGCGCCTCCGAAAGACTG 60.808 63.158 2.29 0.00 36.29 3.51
312 314 2.214181 GAGCGCCTCCGAAAGACTGA 62.214 60.000 2.29 0.00 36.29 3.41
313 315 1.807573 GCGCCTCCGAAAGACTGAG 60.808 63.158 0.00 0.00 36.29 3.35
314 316 1.807573 CGCCTCCGAAAGACTGAGC 60.808 63.158 0.00 0.00 36.29 4.26
315 317 1.448717 GCCTCCGAAAGACTGAGCC 60.449 63.158 0.00 0.00 0.00 4.70
316 318 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
317 319 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
318 320 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
319 321 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
320 322 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
321 323 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
322 324 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
323 325 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
324 326 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
325 327 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
326 328 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
327 329 3.225940 AGACTGAGCCGACATATCATCA 58.774 45.455 0.00 0.00 0.00 3.07
328 330 3.638627 AGACTGAGCCGACATATCATCAA 59.361 43.478 0.00 0.00 0.00 2.57
329 331 4.100035 AGACTGAGCCGACATATCATCAAA 59.900 41.667 0.00 0.00 0.00 2.69
330 332 4.769688 ACTGAGCCGACATATCATCAAAA 58.230 39.130 0.00 0.00 0.00 2.44
331 333 5.371526 ACTGAGCCGACATATCATCAAAAT 58.628 37.500 0.00 0.00 0.00 1.82
332 334 5.468072 ACTGAGCCGACATATCATCAAAATC 59.532 40.000 0.00 0.00 0.00 2.17
333 335 4.756642 TGAGCCGACATATCATCAAAATCC 59.243 41.667 0.00 0.00 0.00 3.01
334 336 4.978099 AGCCGACATATCATCAAAATCCT 58.022 39.130 0.00 0.00 0.00 3.24
335 337 4.758674 AGCCGACATATCATCAAAATCCTG 59.241 41.667 0.00 0.00 0.00 3.86
336 338 4.756642 GCCGACATATCATCAAAATCCTGA 59.243 41.667 0.00 0.00 0.00 3.86
337 339 5.239306 GCCGACATATCATCAAAATCCTGAA 59.761 40.000 0.00 0.00 0.00 3.02
338 340 6.567321 GCCGACATATCATCAAAATCCTGAAG 60.567 42.308 0.00 0.00 0.00 3.02
339 341 6.484643 CCGACATATCATCAAAATCCTGAAGT 59.515 38.462 0.00 0.00 0.00 3.01
340 342 7.657354 CCGACATATCATCAAAATCCTGAAGTA 59.343 37.037 0.00 0.00 0.00 2.24
341 343 9.045223 CGACATATCATCAAAATCCTGAAGTAA 57.955 33.333 0.00 0.00 0.00 2.24
346 348 8.827832 ATCATCAAAATCCTGAAGTAAATCCA 57.172 30.769 0.00 0.00 0.00 3.41
347 349 8.284945 TCATCAAAATCCTGAAGTAAATCCAG 57.715 34.615 0.00 0.00 0.00 3.86
348 350 8.108999 TCATCAAAATCCTGAAGTAAATCCAGA 58.891 33.333 0.00 0.00 0.00 3.86
349 351 8.742777 CATCAAAATCCTGAAGTAAATCCAGAA 58.257 33.333 0.00 0.00 0.00 3.02
350 352 8.704849 TCAAAATCCTGAAGTAAATCCAGAAA 57.295 30.769 0.00 0.00 0.00 2.52
351 353 9.312904 TCAAAATCCTGAAGTAAATCCAGAAAT 57.687 29.630 0.00 0.00 0.00 2.17
357 359 8.686334 TCCTGAAGTAAATCCAGAAATAAATGC 58.314 33.333 0.00 0.00 0.00 3.56
358 360 8.469200 CCTGAAGTAAATCCAGAAATAAATGCA 58.531 33.333 0.00 0.00 0.00 3.96
359 361 9.859427 CTGAAGTAAATCCAGAAATAAATGCAA 57.141 29.630 0.00 0.00 0.00 4.08
360 362 9.859427 TGAAGTAAATCCAGAAATAAATGCAAG 57.141 29.630 0.00 0.00 0.00 4.01
361 363 8.707938 AAGTAAATCCAGAAATAAATGCAAGC 57.292 30.769 0.00 0.00 0.00 4.01
362 364 7.839907 AGTAAATCCAGAAATAAATGCAAGCA 58.160 30.769 0.00 0.00 0.00 3.91
363 365 8.313292 AGTAAATCCAGAAATAAATGCAAGCAA 58.687 29.630 0.00 0.00 0.00 3.91
364 366 6.973229 AATCCAGAAATAAATGCAAGCAAC 57.027 33.333 0.00 0.00 0.00 4.17
365 367 5.465532 TCCAGAAATAAATGCAAGCAACA 57.534 34.783 0.00 0.00 0.00 3.33
366 368 5.472148 TCCAGAAATAAATGCAAGCAACAG 58.528 37.500 0.00 0.00 0.00 3.16
367 369 4.628333 CCAGAAATAAATGCAAGCAACAGG 59.372 41.667 0.00 0.00 0.00 4.00
368 370 5.472148 CAGAAATAAATGCAAGCAACAGGA 58.528 37.500 0.00 0.00 0.00 3.86
369 371 6.103997 CAGAAATAAATGCAAGCAACAGGAT 58.896 36.000 0.00 0.00 0.00 3.24
370 372 6.592607 CAGAAATAAATGCAAGCAACAGGATT 59.407 34.615 0.00 0.00 0.00 3.01
371 373 7.118680 CAGAAATAAATGCAAGCAACAGGATTT 59.881 33.333 0.00 1.77 38.88 2.17
372 374 6.730960 AATAAATGCAAGCAACAGGATTTG 57.269 33.333 0.00 0.00 36.62 2.32
373 375 4.339872 AAATGCAAGCAACAGGATTTGA 57.660 36.364 0.00 0.00 35.01 2.69
374 376 4.339872 AATGCAAGCAACAGGATTTGAA 57.660 36.364 0.00 0.00 0.00 2.69
375 377 3.096489 TGCAAGCAACAGGATTTGAAC 57.904 42.857 0.00 0.00 0.00 3.18
376 378 2.224018 TGCAAGCAACAGGATTTGAACC 60.224 45.455 0.00 0.00 0.00 3.62
377 379 2.867647 GCAAGCAACAGGATTTGAACCC 60.868 50.000 0.00 0.00 0.00 4.11
378 380 2.629617 CAAGCAACAGGATTTGAACCCT 59.370 45.455 0.00 0.00 0.00 4.34
388 390 5.264395 AGGATTTGAACCCTGATAAGTTGG 58.736 41.667 0.00 0.00 0.00 3.77
389 391 4.402474 GGATTTGAACCCTGATAAGTTGGG 59.598 45.833 0.00 0.00 46.07 4.12
390 392 3.449746 TTGAACCCTGATAAGTTGGGG 57.550 47.619 0.00 0.00 44.97 4.96
391 393 2.638325 TGAACCCTGATAAGTTGGGGA 58.362 47.619 3.72 0.00 44.97 4.81
392 394 3.197983 TGAACCCTGATAAGTTGGGGAT 58.802 45.455 3.72 0.00 44.97 3.85
393 395 4.376223 TGAACCCTGATAAGTTGGGGATA 58.624 43.478 3.72 0.00 44.97 2.59
394 396 4.165372 TGAACCCTGATAAGTTGGGGATAC 59.835 45.833 3.72 0.00 44.97 2.24
411 413 3.770388 GGATACCATAGTCCCTCTAAGGC 59.230 52.174 0.00 0.00 40.11 4.35
412 414 4.511294 GGATACCATAGTCCCTCTAAGGCT 60.511 50.000 0.00 0.00 40.11 4.58
413 415 2.965562 ACCATAGTCCCTCTAAGGCTC 58.034 52.381 0.00 0.00 40.11 4.70
414 416 2.520549 ACCATAGTCCCTCTAAGGCTCT 59.479 50.000 0.00 0.00 40.11 4.09
415 417 3.727923 ACCATAGTCCCTCTAAGGCTCTA 59.272 47.826 0.00 0.00 40.11 2.43
416 418 4.170251 ACCATAGTCCCTCTAAGGCTCTAA 59.830 45.833 0.00 0.00 40.11 2.10
417 419 4.525100 CCATAGTCCCTCTAAGGCTCTAAC 59.475 50.000 0.00 0.00 31.98 2.34
418 420 3.035055 AGTCCCTCTAAGGCTCTAACC 57.965 52.381 0.00 0.00 32.73 2.85
419 421 2.315155 AGTCCCTCTAAGGCTCTAACCA 59.685 50.000 0.00 0.00 32.73 3.67
420 422 3.051727 AGTCCCTCTAAGGCTCTAACCAT 60.052 47.826 0.00 0.00 32.73 3.55
421 423 3.322541 GTCCCTCTAAGGCTCTAACCATC 59.677 52.174 0.00 0.00 32.73 3.51
422 424 3.207777 TCCCTCTAAGGCTCTAACCATCT 59.792 47.826 0.00 0.00 32.73 2.90
423 425 4.419200 TCCCTCTAAGGCTCTAACCATCTA 59.581 45.833 0.00 0.00 32.73 1.98
424 426 5.103215 TCCCTCTAAGGCTCTAACCATCTAA 60.103 44.000 0.00 0.00 32.73 2.10
425 427 5.011227 CCCTCTAAGGCTCTAACCATCTAAC 59.989 48.000 0.00 0.00 32.73 2.34
426 428 5.011227 CCTCTAAGGCTCTAACCATCTAACC 59.989 48.000 0.00 0.00 0.00 2.85
427 429 5.525484 TCTAAGGCTCTAACCATCTAACCA 58.475 41.667 0.00 0.00 0.00 3.67
428 430 5.962031 TCTAAGGCTCTAACCATCTAACCAA 59.038 40.000 0.00 0.00 0.00 3.67
429 431 5.514500 AAGGCTCTAACCATCTAACCAAA 57.486 39.130 0.00 0.00 0.00 3.28
430 432 5.104259 AGGCTCTAACCATCTAACCAAAG 57.896 43.478 0.00 0.00 0.00 2.77
431 433 4.080299 AGGCTCTAACCATCTAACCAAAGG 60.080 45.833 0.00 0.00 0.00 3.11
432 434 4.324331 GGCTCTAACCATCTAACCAAAGGT 60.324 45.833 0.00 0.00 37.65 3.50
434 436 5.123979 GCTCTAACCATCTAACCAAAGGTTG 59.876 44.000 11.51 2.53 46.35 3.77
435 437 6.195600 TCTAACCATCTAACCAAAGGTTGT 57.804 37.500 11.51 0.00 46.35 3.32
436 438 6.607019 TCTAACCATCTAACCAAAGGTTGTT 58.393 36.000 11.51 8.75 46.35 2.83
437 439 7.064229 TCTAACCATCTAACCAAAGGTTGTTT 58.936 34.615 11.51 0.00 46.35 2.83
438 440 5.784578 ACCATCTAACCAAAGGTTGTTTC 57.215 39.130 11.51 0.00 46.35 2.78
439 441 4.277423 ACCATCTAACCAAAGGTTGTTTCG 59.723 41.667 11.51 0.00 46.35 3.46
440 442 3.974871 TCTAACCAAAGGTTGTTTCGC 57.025 42.857 11.51 0.00 46.35 4.70
441 443 3.547746 TCTAACCAAAGGTTGTTTCGCT 58.452 40.909 11.51 0.00 46.35 4.93
442 444 2.863401 AACCAAAGGTTGTTTCGCTC 57.137 45.000 0.00 0.00 45.07 5.03
443 445 0.661020 ACCAAAGGTTGTTTCGCTCG 59.339 50.000 0.00 0.00 27.29 5.03
444 446 0.660300 CCAAAGGTTGTTTCGCTCGC 60.660 55.000 0.00 0.00 0.00 5.03
445 447 0.307760 CAAAGGTTGTTTCGCTCGCT 59.692 50.000 0.00 0.00 0.00 4.93
446 448 1.021968 AAAGGTTGTTTCGCTCGCTT 58.978 45.000 0.00 0.00 0.00 4.68
447 449 0.307760 AAGGTTGTTTCGCTCGCTTG 59.692 50.000 0.00 0.00 0.00 4.01
448 450 0.531974 AGGTTGTTTCGCTCGCTTGA 60.532 50.000 0.00 0.00 0.00 3.02
449 451 0.384353 GGTTGTTTCGCTCGCTTGAC 60.384 55.000 0.00 0.00 0.00 3.18
450 452 0.384353 GTTGTTTCGCTCGCTTGACC 60.384 55.000 0.00 0.00 0.00 4.02
451 453 0.531974 TTGTTTCGCTCGCTTGACCT 60.532 50.000 0.00 0.00 0.00 3.85
452 454 0.315886 TGTTTCGCTCGCTTGACCTA 59.684 50.000 0.00 0.00 0.00 3.08
453 455 1.067142 TGTTTCGCTCGCTTGACCTAT 60.067 47.619 0.00 0.00 0.00 2.57
454 456 2.000447 GTTTCGCTCGCTTGACCTATT 59.000 47.619 0.00 0.00 0.00 1.73
455 457 1.922570 TTCGCTCGCTTGACCTATTC 58.077 50.000 0.00 0.00 0.00 1.75
456 458 0.815095 TCGCTCGCTTGACCTATTCA 59.185 50.000 0.00 0.00 0.00 2.57
457 459 1.203758 TCGCTCGCTTGACCTATTCAA 59.796 47.619 0.00 0.00 42.26 2.69
458 460 1.999735 CGCTCGCTTGACCTATTCAAA 59.000 47.619 0.00 0.00 43.90 2.69
459 461 2.029728 CGCTCGCTTGACCTATTCAAAG 59.970 50.000 0.00 0.00 43.90 2.77
460 462 2.352960 GCTCGCTTGACCTATTCAAAGG 59.647 50.000 0.00 0.00 43.90 3.11
461 463 2.939103 CTCGCTTGACCTATTCAAAGGG 59.061 50.000 0.00 0.00 43.90 3.95
462 464 2.569853 TCGCTTGACCTATTCAAAGGGA 59.430 45.455 0.00 0.00 43.90 4.20
463 465 2.678336 CGCTTGACCTATTCAAAGGGAC 59.322 50.000 0.00 0.00 43.90 4.46
464 466 3.686016 GCTTGACCTATTCAAAGGGACA 58.314 45.455 0.00 0.00 43.90 4.02
465 467 4.079253 GCTTGACCTATTCAAAGGGACAA 58.921 43.478 0.00 0.00 43.90 3.18
466 468 4.522789 GCTTGACCTATTCAAAGGGACAAA 59.477 41.667 0.00 0.00 43.90 2.83
467 469 5.185828 GCTTGACCTATTCAAAGGGACAAAT 59.814 40.000 0.00 0.00 43.90 2.32
468 470 6.377146 GCTTGACCTATTCAAAGGGACAAATA 59.623 38.462 0.00 0.00 43.90 1.40
469 471 7.415653 GCTTGACCTATTCAAAGGGACAAATAG 60.416 40.741 0.00 0.00 43.90 1.73
470 472 5.885912 TGACCTATTCAAAGGGACAAATAGC 59.114 40.000 0.00 0.00 41.32 2.97
471 473 4.881850 ACCTATTCAAAGGGACAAATAGCG 59.118 41.667 0.00 0.00 41.32 4.26
472 474 4.275936 CCTATTCAAAGGGACAAATAGCGG 59.724 45.833 0.00 0.00 32.70 5.52
473 475 3.426787 TTCAAAGGGACAAATAGCGGA 57.573 42.857 0.00 0.00 0.00 5.54
474 476 2.706890 TCAAAGGGACAAATAGCGGAC 58.293 47.619 0.00 0.00 0.00 4.79
475 477 2.039216 TCAAAGGGACAAATAGCGGACA 59.961 45.455 0.00 0.00 0.00 4.02
476 478 2.817258 CAAAGGGACAAATAGCGGACAA 59.183 45.455 0.00 0.00 0.00 3.18
477 479 2.871096 AGGGACAAATAGCGGACAAA 57.129 45.000 0.00 0.00 0.00 2.83
478 480 3.149005 AGGGACAAATAGCGGACAAAA 57.851 42.857 0.00 0.00 0.00 2.44
479 481 2.817844 AGGGACAAATAGCGGACAAAAC 59.182 45.455 0.00 0.00 0.00 2.43
480 482 2.554893 GGGACAAATAGCGGACAAAACA 59.445 45.455 0.00 0.00 0.00 2.83
481 483 3.004944 GGGACAAATAGCGGACAAAACAA 59.995 43.478 0.00 0.00 0.00 2.83
482 484 4.500035 GGGACAAATAGCGGACAAAACAAA 60.500 41.667 0.00 0.00 0.00 2.83
483 485 4.443063 GGACAAATAGCGGACAAAACAAAC 59.557 41.667 0.00 0.00 0.00 2.93
484 486 5.000012 ACAAATAGCGGACAAAACAAACA 58.000 34.783 0.00 0.00 0.00 2.83
485 487 4.801516 ACAAATAGCGGACAAAACAAACAC 59.198 37.500 0.00 0.00 0.00 3.32
486 488 2.741122 TAGCGGACAAAACAAACACG 57.259 45.000 0.00 0.00 0.00 4.49
487 489 0.099791 AGCGGACAAAACAAACACGG 59.900 50.000 0.00 0.00 0.00 4.94
488 490 0.868177 GCGGACAAAACAAACACGGG 60.868 55.000 0.00 0.00 0.00 5.28
489 491 0.452585 CGGACAAAACAAACACGGGT 59.547 50.000 0.00 0.00 0.00 5.28
490 492 1.532298 CGGACAAAACAAACACGGGTC 60.532 52.381 0.00 0.00 0.00 4.46
491 493 1.202325 GGACAAAACAAACACGGGTCC 60.202 52.381 0.00 0.00 36.86 4.46
492 494 1.473278 GACAAAACAAACACGGGTCCA 59.527 47.619 0.00 0.00 0.00 4.02
493 495 2.100087 GACAAAACAAACACGGGTCCAT 59.900 45.455 0.00 0.00 0.00 3.41
494 496 2.498078 ACAAAACAAACACGGGTCCATT 59.502 40.909 0.00 0.00 0.00 3.16
495 497 3.055747 ACAAAACAAACACGGGTCCATTT 60.056 39.130 0.00 0.00 0.00 2.32
496 498 2.880963 AACAAACACGGGTCCATTTG 57.119 45.000 0.00 0.00 37.91 2.32
497 499 1.036707 ACAAACACGGGTCCATTTGG 58.963 50.000 5.05 0.00 36.55 3.28
498 500 1.323412 CAAACACGGGTCCATTTGGA 58.677 50.000 0.00 0.00 43.08 3.53
501 503 0.392461 ACACGGGTCCATTTGGATCG 60.392 55.000 17.70 17.70 46.33 3.69
502 504 0.392461 CACGGGTCCATTTGGATCGT 60.392 55.000 18.64 18.64 46.33 3.73
503 505 0.326927 ACGGGTCCATTTGGATCGTT 59.673 50.000 18.64 1.82 46.33 3.85
504 506 0.732571 CGGGTCCATTTGGATCGTTG 59.267 55.000 1.98 0.00 46.33 4.10
505 507 1.102978 GGGTCCATTTGGATCGTTGG 58.897 55.000 1.98 0.00 46.33 3.77
506 508 1.340600 GGGTCCATTTGGATCGTTGGA 60.341 52.381 1.98 1.67 46.33 3.53
507 509 3.264672 GGGTCCATTTGGATCGTTGGAG 61.265 54.545 1.98 0.00 46.33 3.86
508 510 5.766398 GGGTCCATTTGGATCGTTGGAGT 62.766 52.174 1.98 0.00 46.33 3.85
509 511 2.710377 TCCATTTGGATCGTTGGAGTG 58.290 47.619 0.00 0.00 39.78 3.51
510 512 1.745087 CCATTTGGATCGTTGGAGTGG 59.255 52.381 0.00 0.00 37.39 4.00
511 513 2.617788 CCATTTGGATCGTTGGAGTGGA 60.618 50.000 0.00 0.00 37.39 4.02
512 514 3.282021 CATTTGGATCGTTGGAGTGGAT 58.718 45.455 0.00 0.00 0.00 3.41
513 515 2.691409 TTGGATCGTTGGAGTGGATC 57.309 50.000 0.00 0.00 36.65 3.36
514 516 0.459899 TGGATCGTTGGAGTGGATCG 59.540 55.000 0.00 0.00 37.93 3.69
515 517 0.460311 GGATCGTTGGAGTGGATCGT 59.540 55.000 0.00 0.00 37.93 3.73
516 518 1.134788 GGATCGTTGGAGTGGATCGTT 60.135 52.381 0.00 0.00 37.93 3.85
517 519 1.927174 GATCGTTGGAGTGGATCGTTG 59.073 52.381 0.00 0.00 0.00 4.10
518 520 0.037697 TCGTTGGAGTGGATCGTTGG 60.038 55.000 0.00 0.00 0.00 3.77
519 521 0.037697 CGTTGGAGTGGATCGTTGGA 60.038 55.000 0.00 0.00 0.00 3.53
520 522 1.726853 GTTGGAGTGGATCGTTGGAG 58.273 55.000 0.00 0.00 0.00 3.86
521 523 1.002087 GTTGGAGTGGATCGTTGGAGT 59.998 52.381 0.00 0.00 0.00 3.85
522 524 1.348064 TGGAGTGGATCGTTGGAGTT 58.652 50.000 0.00 0.00 0.00 3.01
523 525 1.001974 TGGAGTGGATCGTTGGAGTTG 59.998 52.381 0.00 0.00 0.00 3.16
524 526 1.079503 GAGTGGATCGTTGGAGTTGC 58.920 55.000 0.00 0.00 0.00 4.17
525 527 0.687354 AGTGGATCGTTGGAGTTGCT 59.313 50.000 0.00 0.00 0.00 3.91
526 528 0.798776 GTGGATCGTTGGAGTTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
527 529 0.396435 TGGATCGTTGGAGTTGCTGT 59.604 50.000 0.00 0.00 0.00 4.40
528 530 1.079503 GGATCGTTGGAGTTGCTGTC 58.920 55.000 0.00 0.00 0.00 3.51
529 531 0.716108 GATCGTTGGAGTTGCTGTCG 59.284 55.000 0.00 0.00 0.00 4.35
530 532 0.670546 ATCGTTGGAGTTGCTGTCGG 60.671 55.000 0.00 0.00 0.00 4.79
531 533 1.594293 CGTTGGAGTTGCTGTCGGT 60.594 57.895 0.00 0.00 0.00 4.69
532 534 1.831389 CGTTGGAGTTGCTGTCGGTG 61.831 60.000 0.00 0.00 0.00 4.94
533 535 0.814010 GTTGGAGTTGCTGTCGGTGT 60.814 55.000 0.00 0.00 0.00 4.16
534 536 0.531974 TTGGAGTTGCTGTCGGTGTC 60.532 55.000 0.00 0.00 0.00 3.67
535 537 1.367840 GGAGTTGCTGTCGGTGTCT 59.632 57.895 0.00 0.00 0.00 3.41
536 538 0.667792 GGAGTTGCTGTCGGTGTCTC 60.668 60.000 0.00 0.00 0.00 3.36
537 539 0.032130 GAGTTGCTGTCGGTGTCTCA 59.968 55.000 0.00 0.00 0.00 3.27
593 595 2.677902 GCGACCTCCATTGAAGATGACA 60.678 50.000 0.00 0.00 0.00 3.58
602 604 1.939974 TGAAGATGACAGCCGTATGC 58.060 50.000 0.00 0.00 41.71 3.14
614 616 0.249322 CCGTATGCGTTAGTGGGAGG 60.249 60.000 1.69 0.00 36.15 4.30
616 618 0.106149 GTATGCGTTAGTGGGAGGGG 59.894 60.000 0.00 0.00 0.00 4.79
619 621 0.974010 TGCGTTAGTGGGAGGGGTAG 60.974 60.000 0.00 0.00 0.00 3.18
620 622 1.683418 GCGTTAGTGGGAGGGGTAGG 61.683 65.000 0.00 0.00 0.00 3.18
621 623 1.047034 CGTTAGTGGGAGGGGTAGGG 61.047 65.000 0.00 0.00 0.00 3.53
622 624 1.003835 TTAGTGGGAGGGGTAGGGC 59.996 63.158 0.00 0.00 0.00 5.19
623 625 1.533808 TTAGTGGGAGGGGTAGGGCT 61.534 60.000 0.00 0.00 0.00 5.19
626 628 2.258225 TGGGAGGGGTAGGGCTACA 61.258 63.158 0.00 0.00 37.78 2.74
627 629 1.239235 GGGAGGGGTAGGGCTACAT 59.761 63.158 0.00 0.00 37.78 2.29
633 641 4.263374 GGAGGGGTAGGGCTACATTAATTC 60.263 50.000 0.00 0.00 37.78 2.17
659 667 5.522824 GGTCGGTCTTAGTTAATCAATCCAC 59.477 44.000 0.00 0.00 0.00 4.02
662 670 5.523916 CGGTCTTAGTTAATCAATCCACAGG 59.476 44.000 0.00 0.00 0.00 4.00
664 672 7.283329 GGTCTTAGTTAATCAATCCACAGGAT 58.717 38.462 0.00 0.00 45.46 3.24
665 673 7.227512 GGTCTTAGTTAATCAATCCACAGGATG 59.772 40.741 0.00 0.00 42.27 3.51
666 674 7.987458 GTCTTAGTTAATCAATCCACAGGATGA 59.013 37.037 0.00 0.72 42.27 2.92
667 675 8.548025 TCTTAGTTAATCAATCCACAGGATGAA 58.452 33.333 0.00 0.00 42.27 2.57
668 676 9.177608 CTTAGTTAATCAATCCACAGGATGAAA 57.822 33.333 0.00 0.00 42.27 2.69
669 677 9.527157 TTAGTTAATCAATCCACAGGATGAAAA 57.473 29.630 0.00 0.00 42.27 2.29
670 678 7.830739 AGTTAATCAATCCACAGGATGAAAAC 58.169 34.615 0.00 8.33 42.27 2.43
671 679 7.671398 AGTTAATCAATCCACAGGATGAAAACT 59.329 33.333 0.00 9.91 42.27 2.66
672 680 8.956426 GTTAATCAATCCACAGGATGAAAACTA 58.044 33.333 0.00 0.00 42.27 2.24
674 682 6.126863 TCAATCCACAGGATGAAAACTACT 57.873 37.500 0.00 0.00 42.27 2.57
675 683 6.542821 TCAATCCACAGGATGAAAACTACTT 58.457 36.000 0.00 0.00 42.27 2.24
676 684 7.004086 TCAATCCACAGGATGAAAACTACTTT 58.996 34.615 0.00 0.00 42.27 2.66
677 685 8.160765 TCAATCCACAGGATGAAAACTACTTTA 58.839 33.333 0.00 0.00 42.27 1.85
679 687 8.738645 ATCCACAGGATGAAAACTACTTTATC 57.261 34.615 0.00 0.00 41.43 1.75
681 689 8.383175 TCCACAGGATGAAAACTACTTTATCTT 58.617 33.333 0.00 0.00 39.69 2.40
682 690 9.014297 CCACAGGATGAAAACTACTTTATCTTT 57.986 33.333 0.00 0.00 39.69 2.52
718 726 2.919856 AGGTCAGGTCAGCACGCT 60.920 61.111 0.00 0.00 0.00 5.07
727 735 0.319040 GTCAGCACGCTTCACTCTCA 60.319 55.000 0.00 0.00 0.00 3.27
733 745 0.603569 ACGCTTCACTCTCACCGAAT 59.396 50.000 0.00 0.00 0.00 3.34
763 775 1.298859 GCTCGGTCGCTCCATTTTGT 61.299 55.000 0.00 0.00 35.57 2.83
777 789 2.748461 TTTTGTTCGTTTGCTCTCCG 57.252 45.000 0.00 0.00 0.00 4.63
778 790 1.658994 TTTGTTCGTTTGCTCTCCGT 58.341 45.000 0.00 0.00 0.00 4.69
927 942 3.169908 GGGTGGATAGATTCCCTCTCTC 58.830 54.545 0.00 0.00 44.77 3.20
1033 1056 3.611674 TCAGTTCGTCGCTGGGCA 61.612 61.111 0.84 0.00 34.89 5.36
1246 1552 1.584380 GCTGTCCTACGACGTGGAGT 61.584 60.000 13.45 0.00 42.37 3.85
1254 1560 2.567049 GACGTGGAGTACTGCGCT 59.433 61.111 23.14 11.90 0.00 5.92
1317 1629 2.809601 CGTAAAGCCAGCGTCGCT 60.810 61.111 15.47 15.47 40.77 4.93
1329 1641 1.517257 CGTCGCTCGGCTGAAGATT 60.517 57.895 0.00 0.00 35.71 2.40
1602 2368 2.325082 AATCGTCGGTGTTGCAGGC 61.325 57.895 0.00 0.00 0.00 4.85
1605 2371 2.616330 CGTCGGTGTTGCAGGCATT 61.616 57.895 0.00 0.00 0.00 3.56
1664 2430 3.112709 GGGACAGTTCGAGTGCGC 61.113 66.667 0.00 0.00 37.46 6.09
1788 2554 0.753479 ACCTCATCCGCGATCTCAGT 60.753 55.000 8.23 0.00 0.00 3.41
1872 2638 8.160765 TCACTTCACCTATTCAGGAATTTACAA 58.839 33.333 0.00 0.00 45.91 2.41
2063 2830 7.361799 GGGCTTAGAATAAGCTTTTCTTTTCGA 60.362 37.037 21.12 7.50 42.62 3.71
2086 2853 6.186420 ACAAAGGGTGAATTTTATTGGCTT 57.814 33.333 0.00 0.00 0.00 4.35
2106 2873 6.380846 TGGCTTAAAATGGAAGATGCATAACT 59.619 34.615 0.00 0.00 0.00 2.24
2109 2876 7.646922 GCTTAAAATGGAAGATGCATAACTCAG 59.353 37.037 0.00 0.00 0.00 3.35
2126 2893 3.583383 GTGAGCACACATCTGGCC 58.417 61.111 9.58 0.00 45.32 5.36
2130 2897 0.826715 GAGCACACATCTGGCCTCTA 59.173 55.000 3.32 0.00 0.00 2.43
2158 2925 3.728385 AAGCTCTGCTTCCCTTGTTAT 57.272 42.857 0.00 0.00 46.77 1.89
2173 2940 5.222631 CCTTGTTATGTCAGAAGCAAAACC 58.777 41.667 0.00 0.00 0.00 3.27
2176 2943 4.887071 TGTTATGTCAGAAGCAAAACCAGT 59.113 37.500 0.00 0.00 0.00 4.00
2363 3138 9.146984 CAAGTTTGCTGTCATCATATTGAAATT 57.853 29.630 0.00 0.00 0.00 1.82
2376 3151 1.107114 TGAAATTGCGGTGGTTGTGT 58.893 45.000 0.00 0.00 0.00 3.72
2392 3167 7.149973 GTGGTTGTGTATTCTCTACTGTAACA 58.850 38.462 0.00 0.00 0.00 2.41
2430 3205 8.519799 TTGTATCCCAAAGAAACTAATGATCC 57.480 34.615 0.00 0.00 0.00 3.36
2613 3399 8.967918 TCATGCAGTAGAATAGTAACTACAACT 58.032 33.333 15.42 0.00 40.68 3.16
2633 3419 8.635877 ACAACTGAAATTATAGAAGTAGCTCG 57.364 34.615 0.00 0.00 0.00 5.03
2717 3503 6.273071 ACTCACAAAAACTATTGCTCCAAAC 58.727 36.000 0.00 0.00 33.52 2.93
2790 3579 6.934056 TCATATTTTGAGAAAATGTGGTGGG 58.066 36.000 14.67 0.00 44.88 4.61
2893 3694 3.950397 TCTCTTGGTTCAAATATGCGGT 58.050 40.909 0.00 0.00 0.00 5.68
2997 3798 6.155393 AGACTTGCCTGCTTTATCTTAGTACT 59.845 38.462 0.00 0.00 0.00 2.73
3215 4016 9.687210 CCATATGGTTCTTGATTTTATCACATG 57.313 33.333 14.09 0.00 39.39 3.21
3306 4107 3.257561 CGCCGATTGTCGCTCCAG 61.258 66.667 0.00 0.00 38.82 3.86
3405 4206 5.476599 ACTGTTTAACTGCATGCCTTCATTA 59.523 36.000 16.68 3.83 0.00 1.90
3445 4246 4.543692 TCGAGTTCTAAACCTTCGTCTTG 58.456 43.478 0.00 0.00 32.77 3.02
3612 4413 1.486310 TCAAGAGTATGCGCCATTCCT 59.514 47.619 4.18 0.00 0.00 3.36
3860 4661 0.322975 GCTCTGGCCTCTTCACTTGA 59.677 55.000 3.32 0.00 0.00 3.02
3949 4753 2.279120 CGAGCGGCATGTCCTCTC 60.279 66.667 13.15 13.15 42.06 3.20
4208 5012 6.751157 TCAAGTATTTCGAGTTTAGGTGTGA 58.249 36.000 0.00 0.00 0.00 3.58
4642 6000 4.501071 CTGGCCCTTTTCATTCATTTCTG 58.499 43.478 0.00 0.00 0.00 3.02
4742 6100 3.429410 GGCCATTTTCCTGCACTGTAATC 60.429 47.826 0.00 0.00 0.00 1.75
4743 6101 3.193267 GCCATTTTCCTGCACTGTAATCA 59.807 43.478 0.00 0.00 0.00 2.57
5053 6411 3.308401 AGAAGAAAGGCCACCAAAATGT 58.692 40.909 5.01 0.00 0.00 2.71
5254 6612 6.836953 TCATCATCAAATTTGCAAAGCATTG 58.163 32.000 18.19 19.66 38.76 2.82
5255 6613 6.651225 TCATCATCAAATTTGCAAAGCATTGA 59.349 30.769 26.46 26.46 38.71 2.57
5258 6616 6.483974 TCATCAAATTTGCAAAGCATTGAAGT 59.516 30.769 27.31 16.93 38.16 3.01
5275 6636 7.492524 CATTGAAGTTAGTCATCAGGTAGCTA 58.507 38.462 0.00 0.00 0.00 3.32
5373 7034 1.226686 CTGCTGAGACTGGTGTGCAC 61.227 60.000 10.75 10.75 0.00 4.57
5398 7059 1.286553 AGGTCTCTTCTCCCTCATCGT 59.713 52.381 0.00 0.00 0.00 3.73
5524 7208 0.250295 CCTTTCAGGCACCACGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
5560 7244 2.303311 GGCTCAACTTACCTGGAGAAGT 59.697 50.000 0.00 6.82 37.50 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 0.765510 AACGAGTTCAGGCCCTTCTT 59.234 50.000 0.00 0.00 0.00 2.52
160 162 4.103311 GGGGTACTAAGGAGATGCAAGATT 59.897 45.833 0.00 0.00 0.00 2.40
168 170 5.435545 AATGTAGGGGGTACTAAGGAGAT 57.564 43.478 0.00 0.00 32.19 2.75
177 179 4.099113 GTCTGACAGTAATGTAGGGGGTAC 59.901 50.000 2.24 0.00 0.00 3.34
215 217 3.197790 CGCTTGTGGATCGGCAGG 61.198 66.667 0.00 0.00 0.00 4.85
216 218 3.869272 GCGCTTGTGGATCGGCAG 61.869 66.667 0.00 0.00 0.00 4.85
219 221 0.249447 TATGAGCGCTTGTGGATCGG 60.249 55.000 13.26 0.00 0.00 4.18
222 224 3.393800 GTGTATATGAGCGCTTGTGGAT 58.606 45.455 13.26 3.88 0.00 3.41
223 225 2.798145 CGTGTATATGAGCGCTTGTGGA 60.798 50.000 13.26 0.00 0.00 4.02
225 227 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
226 228 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
228 230 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
229 231 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
233 235 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
234 236 3.636282 AGTGTATGCGCGTGTATATGA 57.364 42.857 13.61 0.00 0.00 2.15
235 237 5.004440 GGATTAGTGTATGCGCGTGTATATG 59.996 44.000 13.61 0.00 0.00 1.78
236 238 5.100259 GGATTAGTGTATGCGCGTGTATAT 58.900 41.667 13.61 0.00 0.00 0.86
237 239 4.478699 GGATTAGTGTATGCGCGTGTATA 58.521 43.478 13.61 2.40 0.00 1.47
238 240 3.314553 GGATTAGTGTATGCGCGTGTAT 58.685 45.455 13.61 4.63 0.00 2.29
239 241 2.544277 GGGATTAGTGTATGCGCGTGTA 60.544 50.000 13.61 0.00 0.00 2.90
240 242 1.567504 GGATTAGTGTATGCGCGTGT 58.432 50.000 13.61 0.00 0.00 4.49
242 244 0.750850 AGGGATTAGTGTATGCGCGT 59.249 50.000 8.43 7.55 0.00 6.01
243 245 2.717580 TAGGGATTAGTGTATGCGCG 57.282 50.000 0.00 0.00 0.00 6.86
244 246 4.188247 TCATAGGGATTAGTGTATGCGC 57.812 45.455 0.00 0.00 0.00 6.09
245 247 4.621460 CGTTCATAGGGATTAGTGTATGCG 59.379 45.833 0.00 0.00 0.00 4.73
246 248 4.389077 GCGTTCATAGGGATTAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
247 249 5.405571 GTGCGTTCATAGGGATTAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
249 251 4.403113 TGTGCGTTCATAGGGATTAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
250 252 3.196901 TGTGCGTTCATAGGGATTAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
251 253 3.555956 GTGTGCGTTCATAGGGATTAGTG 59.444 47.826 0.00 0.00 0.00 2.74
253 255 3.555956 GTGTGTGCGTTCATAGGGATTAG 59.444 47.826 0.00 0.00 0.00 1.73
255 257 2.356135 GTGTGTGCGTTCATAGGGATT 58.644 47.619 0.00 0.00 0.00 3.01
256 258 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
257 259 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
258 260 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
259 261 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
260 262 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
261 263 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
262 264 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
265 267 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
268 270 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
269 271 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
270 272 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
271 273 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
272 274 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
273 275 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
274 276 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
275 277 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
276 278 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
277 279 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
278 280 0.759436 CGCTCATAGGGGTAGGGTGT 60.759 60.000 0.00 0.00 0.00 4.16
280 282 1.837499 GCGCTCATAGGGGTAGGGT 60.837 63.158 0.00 0.00 0.00 4.34
282 284 1.534235 AGGCGCTCATAGGGGTAGG 60.534 63.158 7.64 0.00 0.00 3.18
283 285 1.536943 GGAGGCGCTCATAGGGGTAG 61.537 65.000 7.64 0.00 31.08 3.18
284 286 1.533273 GGAGGCGCTCATAGGGGTA 60.533 63.158 7.64 0.00 31.08 3.69
286 288 3.996124 CGGAGGCGCTCATAGGGG 61.996 72.222 7.64 0.00 31.08 4.79
288 290 0.598680 CTTTCGGAGGCGCTCATAGG 60.599 60.000 7.64 0.00 31.08 2.57
289 291 0.385751 TCTTTCGGAGGCGCTCATAG 59.614 55.000 7.64 0.00 31.08 2.23
290 292 0.102481 GTCTTTCGGAGGCGCTCATA 59.898 55.000 7.64 0.00 31.08 2.15
291 293 1.153549 GTCTTTCGGAGGCGCTCAT 60.154 57.895 7.64 0.00 31.08 2.90
293 295 1.807573 CAGTCTTTCGGAGGCGCTC 60.808 63.158 7.64 2.45 34.31 5.03
294 296 2.219325 CTCAGTCTTTCGGAGGCGCT 62.219 60.000 7.64 0.00 35.32 5.92
295 297 1.807573 CTCAGTCTTTCGGAGGCGC 60.808 63.158 0.00 0.00 35.32 6.53
296 298 1.807573 GCTCAGTCTTTCGGAGGCG 60.808 63.158 0.00 0.00 38.48 5.52
298 300 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
299 301 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
300 302 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
301 303 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
302 304 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
304 306 4.100035 TGATGATATGTCGGCTCAGTCTTT 59.900 41.667 0.00 0.00 0.00 2.52
305 307 3.638627 TGATGATATGTCGGCTCAGTCTT 59.361 43.478 0.00 0.00 0.00 3.01
306 308 3.225940 TGATGATATGTCGGCTCAGTCT 58.774 45.455 0.00 0.00 0.00 3.24
307 309 3.650070 TGATGATATGTCGGCTCAGTC 57.350 47.619 0.00 0.00 0.00 3.51
308 310 4.406648 TTTGATGATATGTCGGCTCAGT 57.593 40.909 0.00 0.00 0.00 3.41
309 311 5.106791 GGATTTTGATGATATGTCGGCTCAG 60.107 44.000 0.00 0.00 0.00 3.35
311 313 4.999950 AGGATTTTGATGATATGTCGGCTC 59.000 41.667 0.00 0.00 0.00 4.70
312 314 4.758674 CAGGATTTTGATGATATGTCGGCT 59.241 41.667 0.00 0.00 0.00 5.52
313 315 4.756642 TCAGGATTTTGATGATATGTCGGC 59.243 41.667 0.00 0.00 0.00 5.54
314 316 6.484643 ACTTCAGGATTTTGATGATATGTCGG 59.515 38.462 0.00 0.00 0.00 4.79
315 317 7.488187 ACTTCAGGATTTTGATGATATGTCG 57.512 36.000 0.00 0.00 0.00 4.35
320 322 9.919416 TGGATTTACTTCAGGATTTTGATGATA 57.081 29.630 0.00 0.00 0.00 2.15
321 323 8.827832 TGGATTTACTTCAGGATTTTGATGAT 57.172 30.769 0.00 0.00 0.00 2.45
322 324 8.108999 TCTGGATTTACTTCAGGATTTTGATGA 58.891 33.333 0.00 0.00 0.00 2.92
323 325 8.284945 TCTGGATTTACTTCAGGATTTTGATG 57.715 34.615 0.00 0.00 0.00 3.07
324 326 8.884124 TTCTGGATTTACTTCAGGATTTTGAT 57.116 30.769 0.00 0.00 0.00 2.57
325 327 8.704849 TTTCTGGATTTACTTCAGGATTTTGA 57.295 30.769 0.00 0.00 0.00 2.69
331 333 8.686334 GCATTTATTTCTGGATTTACTTCAGGA 58.314 33.333 0.00 0.00 0.00 3.86
332 334 8.469200 TGCATTTATTTCTGGATTTACTTCAGG 58.531 33.333 0.00 0.00 0.00 3.86
333 335 9.859427 TTGCATTTATTTCTGGATTTACTTCAG 57.141 29.630 0.00 0.00 0.00 3.02
334 336 9.859427 CTTGCATTTATTTCTGGATTTACTTCA 57.141 29.630 0.00 0.00 0.00 3.02
335 337 8.811378 GCTTGCATTTATTTCTGGATTTACTTC 58.189 33.333 0.00 0.00 0.00 3.01
336 338 8.313292 TGCTTGCATTTATTTCTGGATTTACTT 58.687 29.630 0.00 0.00 0.00 2.24
337 339 7.839907 TGCTTGCATTTATTTCTGGATTTACT 58.160 30.769 0.00 0.00 0.00 2.24
338 340 8.382875 GTTGCTTGCATTTATTTCTGGATTTAC 58.617 33.333 0.00 0.00 0.00 2.01
339 341 8.093307 TGTTGCTTGCATTTATTTCTGGATTTA 58.907 29.630 0.00 0.00 0.00 1.40
340 342 6.935771 TGTTGCTTGCATTTATTTCTGGATTT 59.064 30.769 0.00 0.00 0.00 2.17
341 343 6.465948 TGTTGCTTGCATTTATTTCTGGATT 58.534 32.000 0.00 0.00 0.00 3.01
342 344 6.040209 TGTTGCTTGCATTTATTTCTGGAT 57.960 33.333 0.00 0.00 0.00 3.41
343 345 5.465532 TGTTGCTTGCATTTATTTCTGGA 57.534 34.783 0.00 0.00 0.00 3.86
344 346 4.628333 CCTGTTGCTTGCATTTATTTCTGG 59.372 41.667 0.00 0.00 0.00 3.86
345 347 5.472148 TCCTGTTGCTTGCATTTATTTCTG 58.528 37.500 0.00 0.00 0.00 3.02
346 348 5.726980 TCCTGTTGCTTGCATTTATTTCT 57.273 34.783 0.00 0.00 0.00 2.52
347 349 6.973229 AATCCTGTTGCTTGCATTTATTTC 57.027 33.333 0.00 0.00 0.00 2.17
348 350 6.935771 TCAAATCCTGTTGCTTGCATTTATTT 59.064 30.769 0.00 0.00 0.00 1.40
349 351 6.465948 TCAAATCCTGTTGCTTGCATTTATT 58.534 32.000 0.00 0.00 0.00 1.40
350 352 6.040209 TCAAATCCTGTTGCTTGCATTTAT 57.960 33.333 0.00 0.00 0.00 1.40
351 353 5.465532 TCAAATCCTGTTGCTTGCATTTA 57.534 34.783 0.00 0.00 0.00 1.40
352 354 4.339872 TCAAATCCTGTTGCTTGCATTT 57.660 36.364 0.00 0.00 0.00 2.32
353 355 4.060205 GTTCAAATCCTGTTGCTTGCATT 58.940 39.130 0.00 0.00 0.00 3.56
354 356 3.555586 GGTTCAAATCCTGTTGCTTGCAT 60.556 43.478 0.00 0.00 0.00 3.96
355 357 2.224018 GGTTCAAATCCTGTTGCTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
356 358 2.407090 GGTTCAAATCCTGTTGCTTGC 58.593 47.619 0.00 0.00 0.00 4.01
357 359 2.629617 AGGGTTCAAATCCTGTTGCTTG 59.370 45.455 0.00 0.00 38.36 4.01
358 360 2.962859 AGGGTTCAAATCCTGTTGCTT 58.037 42.857 0.00 0.00 38.36 3.91
359 361 2.683211 AGGGTTCAAATCCTGTTGCT 57.317 45.000 0.00 0.00 38.36 3.91
365 367 5.264395 CCAACTTATCAGGGTTCAAATCCT 58.736 41.667 0.00 0.00 41.23 3.24
366 368 4.402474 CCCAACTTATCAGGGTTCAAATCC 59.598 45.833 0.00 0.00 37.81 3.01
367 369 4.402474 CCCCAACTTATCAGGGTTCAAATC 59.598 45.833 0.00 0.00 41.16 2.17
368 370 4.045334 TCCCCAACTTATCAGGGTTCAAAT 59.955 41.667 0.00 0.00 41.16 2.32
369 371 3.399644 TCCCCAACTTATCAGGGTTCAAA 59.600 43.478 0.00 0.00 41.16 2.69
370 372 2.990284 TCCCCAACTTATCAGGGTTCAA 59.010 45.455 0.00 0.00 41.16 2.69
371 373 2.638325 TCCCCAACTTATCAGGGTTCA 58.362 47.619 0.00 0.00 41.16 3.18
372 374 3.953542 ATCCCCAACTTATCAGGGTTC 57.046 47.619 0.00 0.00 41.16 3.62
373 375 3.462205 GGTATCCCCAACTTATCAGGGTT 59.538 47.826 0.00 0.00 41.16 4.11
374 376 3.053826 GGTATCCCCAACTTATCAGGGT 58.946 50.000 0.00 0.00 41.16 4.34
375 377 3.053077 TGGTATCCCCAACTTATCAGGG 58.947 50.000 0.00 0.00 41.50 4.45
389 391 3.770388 GCCTTAGAGGGACTATGGTATCC 59.230 52.174 0.00 0.00 43.83 2.59
390 392 4.679331 AGCCTTAGAGGGACTATGGTATC 58.321 47.826 0.00 0.00 43.83 2.24
391 393 4.358614 AGAGCCTTAGAGGGACTATGGTAT 59.641 45.833 0.00 0.00 43.83 2.73
392 394 3.727923 AGAGCCTTAGAGGGACTATGGTA 59.272 47.826 0.00 0.00 43.83 3.25
393 395 2.520549 AGAGCCTTAGAGGGACTATGGT 59.479 50.000 0.00 0.00 43.83 3.55
394 396 3.252554 AGAGCCTTAGAGGGACTATGG 57.747 52.381 0.00 0.00 41.55 2.74
395 397 4.525100 GGTTAGAGCCTTAGAGGGACTATG 59.475 50.000 0.00 0.00 41.55 2.23
396 398 4.170251 TGGTTAGAGCCTTAGAGGGACTAT 59.830 45.833 0.00 0.00 41.55 2.12
397 399 3.530564 TGGTTAGAGCCTTAGAGGGACTA 59.469 47.826 0.00 0.00 41.55 2.59
399 401 2.748388 TGGTTAGAGCCTTAGAGGGAC 58.252 52.381 0.00 0.00 35.37 4.46
400 402 3.207777 AGATGGTTAGAGCCTTAGAGGGA 59.792 47.826 0.00 0.00 35.37 4.20
401 403 3.582164 AGATGGTTAGAGCCTTAGAGGG 58.418 50.000 0.00 0.00 35.37 4.30
402 404 5.011227 GGTTAGATGGTTAGAGCCTTAGAGG 59.989 48.000 0.00 0.00 38.80 3.69
403 405 5.598830 TGGTTAGATGGTTAGAGCCTTAGAG 59.401 44.000 0.00 0.00 0.00 2.43
404 406 5.525484 TGGTTAGATGGTTAGAGCCTTAGA 58.475 41.667 0.00 0.00 0.00 2.10
405 407 5.871396 TGGTTAGATGGTTAGAGCCTTAG 57.129 43.478 0.00 0.00 0.00 2.18
406 408 6.352737 CCTTTGGTTAGATGGTTAGAGCCTTA 60.353 42.308 0.00 0.00 0.00 2.69
407 409 5.501156 CTTTGGTTAGATGGTTAGAGCCTT 58.499 41.667 0.00 0.00 0.00 4.35
408 410 4.080299 CCTTTGGTTAGATGGTTAGAGCCT 60.080 45.833 0.00 0.00 0.00 4.58
409 411 4.200092 CCTTTGGTTAGATGGTTAGAGCC 58.800 47.826 0.00 0.00 0.00 4.70
410 412 4.844884 ACCTTTGGTTAGATGGTTAGAGC 58.155 43.478 0.00 0.00 27.29 4.09
411 413 6.238648 ACAACCTTTGGTTAGATGGTTAGAG 58.761 40.000 1.34 0.00 45.01 2.43
412 414 6.195600 ACAACCTTTGGTTAGATGGTTAGA 57.804 37.500 1.34 0.00 45.01 2.10
413 415 6.894339 AACAACCTTTGGTTAGATGGTTAG 57.106 37.500 1.34 0.00 45.01 2.34
414 416 6.016943 CGAAACAACCTTTGGTTAGATGGTTA 60.017 38.462 1.34 0.00 45.01 2.85
415 417 5.221165 CGAAACAACCTTTGGTTAGATGGTT 60.221 40.000 1.34 0.00 45.01 3.67
416 418 4.277423 CGAAACAACCTTTGGTTAGATGGT 59.723 41.667 1.34 0.00 45.01 3.55
417 419 4.794169 CGAAACAACCTTTGGTTAGATGG 58.206 43.478 1.34 0.00 45.01 3.51
418 420 4.023193 AGCGAAACAACCTTTGGTTAGATG 60.023 41.667 1.34 0.00 45.01 2.90
419 421 4.142038 AGCGAAACAACCTTTGGTTAGAT 58.858 39.130 1.34 0.00 45.01 1.98
420 422 3.547746 AGCGAAACAACCTTTGGTTAGA 58.452 40.909 1.34 0.00 45.01 2.10
421 423 3.606153 CGAGCGAAACAACCTTTGGTTAG 60.606 47.826 1.34 0.54 45.01 2.34
422 424 2.288458 CGAGCGAAACAACCTTTGGTTA 59.712 45.455 1.34 0.00 45.01 2.85
424 426 0.661020 CGAGCGAAACAACCTTTGGT 59.339 50.000 0.00 0.00 37.65 3.67
425 427 0.660300 GCGAGCGAAACAACCTTTGG 60.660 55.000 0.00 0.00 34.12 3.28
426 428 0.307760 AGCGAGCGAAACAACCTTTG 59.692 50.000 0.00 0.00 0.00 2.77
427 429 1.021968 AAGCGAGCGAAACAACCTTT 58.978 45.000 0.00 0.00 0.00 3.11
428 430 0.307760 CAAGCGAGCGAAACAACCTT 59.692 50.000 0.00 0.00 0.00 3.50
429 431 0.531974 TCAAGCGAGCGAAACAACCT 60.532 50.000 0.00 0.00 0.00 3.50
430 432 0.384353 GTCAAGCGAGCGAAACAACC 60.384 55.000 0.00 0.00 0.00 3.77
431 433 0.384353 GGTCAAGCGAGCGAAACAAC 60.384 55.000 0.00 0.00 0.00 3.32
432 434 0.531974 AGGTCAAGCGAGCGAAACAA 60.532 50.000 0.00 0.00 44.60 2.83
433 435 0.315886 TAGGTCAAGCGAGCGAAACA 59.684 50.000 0.00 0.00 44.60 2.83
434 436 1.641577 ATAGGTCAAGCGAGCGAAAC 58.358 50.000 0.00 0.00 44.60 2.78
435 437 2.268298 GAATAGGTCAAGCGAGCGAAA 58.732 47.619 0.00 0.00 44.60 3.46
436 438 1.203758 TGAATAGGTCAAGCGAGCGAA 59.796 47.619 0.00 0.00 44.60 4.70
437 439 0.815095 TGAATAGGTCAAGCGAGCGA 59.185 50.000 0.00 0.00 44.60 4.93
438 440 1.640428 TTGAATAGGTCAAGCGAGCG 58.360 50.000 0.00 0.00 44.60 5.03
439 441 2.352960 CCTTTGAATAGGTCAAGCGAGC 59.647 50.000 0.00 0.00 46.85 5.03
440 442 2.939103 CCCTTTGAATAGGTCAAGCGAG 59.061 50.000 0.00 0.00 46.85 5.03
441 443 2.569853 TCCCTTTGAATAGGTCAAGCGA 59.430 45.455 0.00 0.00 46.85 4.93
442 444 2.678336 GTCCCTTTGAATAGGTCAAGCG 59.322 50.000 0.00 0.00 46.85 4.68
443 445 3.686016 TGTCCCTTTGAATAGGTCAAGC 58.314 45.455 0.00 0.00 46.85 4.01
444 446 6.840780 ATTTGTCCCTTTGAATAGGTCAAG 57.159 37.500 0.00 0.00 46.85 3.02
445 447 6.377146 GCTATTTGTCCCTTTGAATAGGTCAA 59.623 38.462 0.00 0.00 44.74 3.18
446 448 5.885912 GCTATTTGTCCCTTTGAATAGGTCA 59.114 40.000 0.00 0.00 34.32 4.02
447 449 5.007724 CGCTATTTGTCCCTTTGAATAGGTC 59.992 44.000 0.00 0.00 34.32 3.85
448 450 4.881850 CGCTATTTGTCCCTTTGAATAGGT 59.118 41.667 0.00 0.00 34.32 3.08
449 451 4.275936 CCGCTATTTGTCCCTTTGAATAGG 59.724 45.833 0.00 0.00 34.32 2.57
450 452 5.007724 GTCCGCTATTTGTCCCTTTGAATAG 59.992 44.000 0.00 0.00 35.95 1.73
451 453 4.879545 GTCCGCTATTTGTCCCTTTGAATA 59.120 41.667 0.00 0.00 0.00 1.75
452 454 3.694566 GTCCGCTATTTGTCCCTTTGAAT 59.305 43.478 0.00 0.00 0.00 2.57
453 455 3.078837 GTCCGCTATTTGTCCCTTTGAA 58.921 45.455 0.00 0.00 0.00 2.69
454 456 2.039216 TGTCCGCTATTTGTCCCTTTGA 59.961 45.455 0.00 0.00 0.00 2.69
455 457 2.432444 TGTCCGCTATTTGTCCCTTTG 58.568 47.619 0.00 0.00 0.00 2.77
456 458 2.871096 TGTCCGCTATTTGTCCCTTT 57.129 45.000 0.00 0.00 0.00 3.11
457 459 2.871096 TTGTCCGCTATTTGTCCCTT 57.129 45.000 0.00 0.00 0.00 3.95
458 460 2.817844 GTTTTGTCCGCTATTTGTCCCT 59.182 45.455 0.00 0.00 0.00 4.20
459 461 2.554893 TGTTTTGTCCGCTATTTGTCCC 59.445 45.455 0.00 0.00 0.00 4.46
460 462 3.907894 TGTTTTGTCCGCTATTTGTCC 57.092 42.857 0.00 0.00 0.00 4.02
461 463 5.038033 TGTTTGTTTTGTCCGCTATTTGTC 58.962 37.500 0.00 0.00 0.00 3.18
462 464 4.801516 GTGTTTGTTTTGTCCGCTATTTGT 59.198 37.500 0.00 0.00 0.00 2.83
463 465 4.085822 CGTGTTTGTTTTGTCCGCTATTTG 60.086 41.667 0.00 0.00 0.00 2.32
464 466 4.039032 CGTGTTTGTTTTGTCCGCTATTT 58.961 39.130 0.00 0.00 0.00 1.40
465 467 3.549221 CCGTGTTTGTTTTGTCCGCTATT 60.549 43.478 0.00 0.00 0.00 1.73
466 468 2.031508 CCGTGTTTGTTTTGTCCGCTAT 60.032 45.455 0.00 0.00 0.00 2.97
467 469 1.331138 CCGTGTTTGTTTTGTCCGCTA 59.669 47.619 0.00 0.00 0.00 4.26
468 470 0.099791 CCGTGTTTGTTTTGTCCGCT 59.900 50.000 0.00 0.00 0.00 5.52
469 471 0.868177 CCCGTGTTTGTTTTGTCCGC 60.868 55.000 0.00 0.00 0.00 5.54
470 472 0.452585 ACCCGTGTTTGTTTTGTCCG 59.547 50.000 0.00 0.00 0.00 4.79
471 473 1.202325 GGACCCGTGTTTGTTTTGTCC 60.202 52.381 0.00 0.00 34.61 4.02
472 474 1.473278 TGGACCCGTGTTTGTTTTGTC 59.527 47.619 0.00 0.00 0.00 3.18
473 475 1.546961 TGGACCCGTGTTTGTTTTGT 58.453 45.000 0.00 0.00 0.00 2.83
474 476 2.880963 ATGGACCCGTGTTTGTTTTG 57.119 45.000 0.00 0.00 0.00 2.44
475 477 3.526534 CAAATGGACCCGTGTTTGTTTT 58.473 40.909 0.00 0.00 0.00 2.43
476 478 2.159028 CCAAATGGACCCGTGTTTGTTT 60.159 45.455 0.00 0.00 37.39 2.83
477 479 1.410882 CCAAATGGACCCGTGTTTGTT 59.589 47.619 0.00 0.00 37.39 2.83
478 480 1.036707 CCAAATGGACCCGTGTTTGT 58.963 50.000 0.00 0.00 37.39 2.83
479 481 1.323412 TCCAAATGGACCCGTGTTTG 58.677 50.000 0.00 0.00 39.78 2.93
480 482 3.831651 TCCAAATGGACCCGTGTTT 57.168 47.368 0.00 0.00 39.78 2.83
490 492 1.745087 CCACTCCAACGATCCAAATGG 59.255 52.381 0.00 0.00 0.00 3.16
491 493 2.710377 TCCACTCCAACGATCCAAATG 58.290 47.619 0.00 0.00 0.00 2.32
492 494 3.545703 GATCCACTCCAACGATCCAAAT 58.454 45.455 0.00 0.00 0.00 2.32
493 495 2.676750 CGATCCACTCCAACGATCCAAA 60.677 50.000 0.00 0.00 30.69 3.28
494 496 1.134818 CGATCCACTCCAACGATCCAA 60.135 52.381 0.00 0.00 30.69 3.53
495 497 0.459899 CGATCCACTCCAACGATCCA 59.540 55.000 0.00 0.00 30.69 3.41
496 498 0.460311 ACGATCCACTCCAACGATCC 59.540 55.000 0.00 0.00 30.69 3.36
497 499 1.927174 CAACGATCCACTCCAACGATC 59.073 52.381 0.00 0.00 0.00 3.69
498 500 1.405526 CCAACGATCCACTCCAACGAT 60.406 52.381 0.00 0.00 0.00 3.73
499 501 0.037697 CCAACGATCCACTCCAACGA 60.038 55.000 0.00 0.00 0.00 3.85
500 502 0.037697 TCCAACGATCCACTCCAACG 60.038 55.000 0.00 0.00 0.00 4.10
501 503 1.002087 ACTCCAACGATCCACTCCAAC 59.998 52.381 0.00 0.00 0.00 3.77
502 504 1.348064 ACTCCAACGATCCACTCCAA 58.652 50.000 0.00 0.00 0.00 3.53
503 505 1.001974 CAACTCCAACGATCCACTCCA 59.998 52.381 0.00 0.00 0.00 3.86
504 506 1.726853 CAACTCCAACGATCCACTCC 58.273 55.000 0.00 0.00 0.00 3.85
505 507 1.079503 GCAACTCCAACGATCCACTC 58.920 55.000 0.00 0.00 0.00 3.51
506 508 0.687354 AGCAACTCCAACGATCCACT 59.313 50.000 0.00 0.00 0.00 4.00
507 509 0.798776 CAGCAACTCCAACGATCCAC 59.201 55.000 0.00 0.00 0.00 4.02
508 510 0.396435 ACAGCAACTCCAACGATCCA 59.604 50.000 0.00 0.00 0.00 3.41
509 511 1.079503 GACAGCAACTCCAACGATCC 58.920 55.000 0.00 0.00 0.00 3.36
510 512 0.716108 CGACAGCAACTCCAACGATC 59.284 55.000 0.00 0.00 0.00 3.69
511 513 0.670546 CCGACAGCAACTCCAACGAT 60.671 55.000 0.00 0.00 0.00 3.73
512 514 1.300620 CCGACAGCAACTCCAACGA 60.301 57.895 0.00 0.00 0.00 3.85
513 515 1.594293 ACCGACAGCAACTCCAACG 60.594 57.895 0.00 0.00 0.00 4.10
514 516 0.814010 ACACCGACAGCAACTCCAAC 60.814 55.000 0.00 0.00 0.00 3.77
515 517 0.531974 GACACCGACAGCAACTCCAA 60.532 55.000 0.00 0.00 0.00 3.53
516 518 1.069090 GACACCGACAGCAACTCCA 59.931 57.895 0.00 0.00 0.00 3.86
517 519 0.667792 GAGACACCGACAGCAACTCC 60.668 60.000 0.00 0.00 0.00 3.85
518 520 0.032130 TGAGACACCGACAGCAACTC 59.968 55.000 0.00 0.00 0.00 3.01
519 521 0.249489 GTGAGACACCGACAGCAACT 60.249 55.000 0.00 0.00 0.00 3.16
520 522 1.222115 GGTGAGACACCGACAGCAAC 61.222 60.000 5.17 0.00 44.95 4.17
521 523 1.069090 GGTGAGACACCGACAGCAA 59.931 57.895 5.17 0.00 44.95 3.91
522 524 2.734591 GGTGAGACACCGACAGCA 59.265 61.111 5.17 0.00 44.95 4.41
530 532 4.556699 GCAAGTAAACATTGGGTGAGACAC 60.557 45.833 0.00 0.00 0.00 3.67
531 533 3.568007 GCAAGTAAACATTGGGTGAGACA 59.432 43.478 0.00 0.00 0.00 3.41
532 534 3.057526 GGCAAGTAAACATTGGGTGAGAC 60.058 47.826 0.00 0.00 0.00 3.36
533 535 3.153919 GGCAAGTAAACATTGGGTGAGA 58.846 45.455 0.00 0.00 0.00 3.27
534 536 2.231235 GGGCAAGTAAACATTGGGTGAG 59.769 50.000 0.00 0.00 0.00 3.51
535 537 2.158385 AGGGCAAGTAAACATTGGGTGA 60.158 45.455 0.00 0.00 0.00 4.02
536 538 2.231235 GAGGGCAAGTAAACATTGGGTG 59.769 50.000 0.00 0.00 0.00 4.61
537 539 2.525368 GAGGGCAAGTAAACATTGGGT 58.475 47.619 0.00 0.00 0.00 4.51
593 595 1.143183 CCCACTAACGCATACGGCT 59.857 57.895 0.00 0.00 46.04 5.52
602 604 1.047034 CCCTACCCCTCCCACTAACG 61.047 65.000 0.00 0.00 0.00 3.18
603 605 1.343431 GCCCTACCCCTCCCACTAAC 61.343 65.000 0.00 0.00 0.00 2.34
614 616 4.104261 ACCAGAATTAATGTAGCCCTACCC 59.896 45.833 3.21 0.00 35.26 3.69
616 618 4.989168 CGACCAGAATTAATGTAGCCCTAC 59.011 45.833 0.00 0.00 36.63 3.18
619 621 3.139077 CCGACCAGAATTAATGTAGCCC 58.861 50.000 0.00 0.00 0.00 5.19
620 622 3.805207 ACCGACCAGAATTAATGTAGCC 58.195 45.455 0.00 0.00 0.00 3.93
621 623 4.694339 AGACCGACCAGAATTAATGTAGC 58.306 43.478 0.00 0.00 0.00 3.58
622 624 7.490000 ACTAAGACCGACCAGAATTAATGTAG 58.510 38.462 0.00 0.00 0.00 2.74
623 625 7.414222 ACTAAGACCGACCAGAATTAATGTA 57.586 36.000 0.00 0.00 0.00 2.29
626 628 9.543783 GATTAACTAAGACCGACCAGAATTAAT 57.456 33.333 0.00 0.00 0.00 1.40
627 629 8.533657 TGATTAACTAAGACCGACCAGAATTAA 58.466 33.333 0.00 0.00 0.00 1.40
633 641 5.753921 GGATTGATTAACTAAGACCGACCAG 59.246 44.000 0.00 0.00 0.00 4.00
681 689 8.763984 TGACCTGGGTGTATAAAAACTAAAAA 57.236 30.769 0.00 0.00 0.00 1.94
682 690 7.449086 CCTGACCTGGGTGTATAAAAACTAAAA 59.551 37.037 0.00 0.00 0.00 1.52
683 691 6.943718 CCTGACCTGGGTGTATAAAAACTAAA 59.056 38.462 0.00 0.00 0.00 1.85
684 692 6.044637 ACCTGACCTGGGTGTATAAAAACTAA 59.955 38.462 0.00 0.00 35.51 2.24
685 693 5.548836 ACCTGACCTGGGTGTATAAAAACTA 59.451 40.000 0.00 0.00 35.51 2.24
686 694 4.352893 ACCTGACCTGGGTGTATAAAAACT 59.647 41.667 0.00 0.00 35.51 2.66
687 695 4.659115 ACCTGACCTGGGTGTATAAAAAC 58.341 43.478 0.00 0.00 35.51 2.43
688 696 4.351407 TGACCTGACCTGGGTGTATAAAAA 59.649 41.667 0.00 0.00 37.17 1.94
689 697 3.911260 TGACCTGACCTGGGTGTATAAAA 59.089 43.478 0.00 0.00 37.17 1.52
690 698 3.517901 CTGACCTGACCTGGGTGTATAAA 59.482 47.826 0.00 0.00 37.17 1.40
691 699 3.104512 CTGACCTGACCTGGGTGTATAA 58.895 50.000 0.00 0.00 37.17 0.98
692 700 2.747177 CTGACCTGACCTGGGTGTATA 58.253 52.381 0.00 0.00 37.17 1.47
718 726 0.036388 GGCCATTCGGTGAGAGTGAA 60.036 55.000 0.00 0.00 38.69 3.18
727 735 2.579201 CGAGTCAGGCCATTCGGT 59.421 61.111 5.01 0.00 33.28 4.69
763 775 3.637714 GCACGGAGAGCAAACGAA 58.362 55.556 0.00 0.00 45.32 3.85
777 789 3.771160 ACCATCGACGGGGAGCAC 61.771 66.667 1.13 0.00 0.00 4.40
778 790 3.770040 CACCATCGACGGGGAGCA 61.770 66.667 1.13 0.00 0.00 4.26
848 862 3.725032 GGAAACTCCCCGGTCCCC 61.725 72.222 0.00 0.00 0.00 4.81
849 863 4.091939 CGGAAACTCCCCGGTCCC 62.092 72.222 0.00 0.00 43.05 4.46
927 942 6.595326 TGGAAACAGATGCAGAGTATTTAGTG 59.405 38.462 0.00 0.00 35.01 2.74
1246 1552 1.226575 CGAATCGGTCAGCGCAGTA 60.227 57.895 11.47 0.00 0.00 2.74
1254 1560 2.126228 GCGTGGACGAATCGGTCA 60.126 61.111 7.80 1.61 43.02 4.02
1329 1641 2.833582 CTCCTCGGAAGGCGGCTA 60.834 66.667 13.71 0.00 43.02 3.93
1410 2167 0.681564 ACCTCCAGTACCTCTCGCTG 60.682 60.000 0.00 0.00 0.00 5.18
1546 2312 1.039785 TCCTCTCCATCAGTCAGCCG 61.040 60.000 0.00 0.00 0.00 5.52
1788 2554 7.615757 TCTGACCTCTTATCTTGTAGATGTTCA 59.384 37.037 0.00 0.00 35.37 3.18
1911 2677 0.109827 TAATTCCACGAACGTCGCGA 60.110 50.000 3.71 3.71 45.12 5.87
1972 2738 6.327386 AGTGGGTGTAGTGAATTGGAATAT 57.673 37.500 0.00 0.00 0.00 1.28
1977 2743 4.141287 TCAAAGTGGGTGTAGTGAATTGG 58.859 43.478 0.00 0.00 0.00 3.16
2063 2830 5.823861 AGCCAATAAAATTCACCCTTTGT 57.176 34.783 0.00 0.00 0.00 2.83
2086 2853 7.828717 TCACTGAGTTATGCATCTTCCATTTTA 59.171 33.333 0.19 0.00 0.00 1.52
2106 2873 0.321034 GCCAGATGTGTGCTCACTGA 60.321 55.000 18.85 1.07 44.14 3.41
2109 2876 1.002868 AGGCCAGATGTGTGCTCAC 60.003 57.895 11.94 11.94 44.08 3.51
2120 2887 2.894126 GCTTAGCTATGTAGAGGCCAGA 59.106 50.000 5.01 0.00 0.00 3.86
2122 2889 2.894126 GAGCTTAGCTATGTAGAGGCCA 59.106 50.000 6.75 0.00 39.88 5.36
2124 2891 4.173036 CAGAGCTTAGCTATGTAGAGGC 57.827 50.000 19.40 0.00 42.12 4.70
2158 2925 2.997980 TCACTGGTTTTGCTTCTGACA 58.002 42.857 0.00 0.00 0.00 3.58
2173 2940 7.530010 CAAAGTTATGAACCAGGTATTCACTG 58.470 38.462 0.00 0.00 38.84 3.66
2176 2943 6.245408 AGCAAAGTTATGAACCAGGTATTCA 58.755 36.000 0.00 0.00 40.25 2.57
2363 3138 1.346395 AGAGAATACACAACCACCGCA 59.654 47.619 0.00 0.00 0.00 5.69
2392 3167 5.732331 TGGGATACAAAGGAATTCAGGAT 57.268 39.130 7.93 0.00 39.74 3.24
2457 3240 7.046652 TGATTTGTCAGCCAAAATGAAAAGAA 58.953 30.769 0.00 0.00 45.72 2.52
2613 3399 5.069914 TGCCCGAGCTACTTCTATAATTTCA 59.930 40.000 0.00 0.00 40.80 2.69
2622 3408 1.144936 GCATGCCCGAGCTACTTCT 59.855 57.895 6.36 0.00 40.80 2.85
2633 3419 1.312815 GAGATAACCACAGCATGCCC 58.687 55.000 15.66 0.00 42.53 5.36
2688 3474 6.259550 AGCAATAGTTTTTGTGAGTCATCC 57.740 37.500 0.00 0.00 0.00 3.51
2704 3490 6.596888 TCTGAGAGAATTGTTTGGAGCAATAG 59.403 38.462 0.00 0.00 35.73 1.73
2717 3503 8.108551 AGGACTTTGATTTTCTGAGAGAATTG 57.891 34.615 0.00 0.00 33.67 2.32
2808 3597 2.507886 TGCTAAAAGGCTGGCTACCATA 59.492 45.455 3.41 0.00 30.82 2.74
2908 3709 3.513515 TGTTCCATAAACCTTTCCATGGC 59.486 43.478 6.96 0.00 38.26 4.40
2997 3798 4.298626 AGAATATGTAGCCCTCTGGACAA 58.701 43.478 0.00 0.00 0.00 3.18
3210 4011 6.370994 AGTTCTCTTCAATAGACTTGCATGTG 59.629 38.462 10.37 0.00 0.00 3.21
3405 4206 6.937436 ACTCGAAGAAACTTAAACACCATT 57.063 33.333 0.00 0.00 34.09 3.16
3445 4246 2.162681 CATATTTCCAAGATCGCCCCC 58.837 52.381 0.00 0.00 0.00 5.40
3612 4413 0.672401 GAAGGCGAACAATGTCCGGA 60.672 55.000 0.00 0.00 0.00 5.14
3679 4480 6.097554 CGTAGAGATCTTATATGGCCAATCCT 59.902 42.308 10.96 8.99 35.26 3.24
3860 4661 7.556275 TGACAGATTTGAGGTTACAAAGTTTCT 59.444 33.333 0.00 0.00 41.87 2.52
3949 4753 1.830477 CCTCTCAAGGAAGACTGGAGG 59.170 57.143 0.00 0.00 45.80 4.30
4151 4955 2.755103 GCCCCTTCGTTGAAGATGATTT 59.245 45.455 8.09 0.00 41.71 2.17
4208 5012 3.188159 TGAAAGCCAGACAAAGTACGT 57.812 42.857 0.00 0.00 0.00 3.57
4683 6041 2.012673 AGCACTCAGATTTTCGGATGC 58.987 47.619 0.00 0.00 31.28 3.91
4686 6044 4.621991 GCTATAGCACTCAGATTTTCGGA 58.378 43.478 20.01 0.00 41.59 4.55
4711 6069 5.523552 GTGCAGGAAAATGGCCAATAAATAC 59.476 40.000 10.96 0.00 0.00 1.89
4742 6100 2.027926 GGCGCGACTTTATTTGCAATTG 59.972 45.455 12.10 0.00 0.00 2.32
4743 6101 2.258755 GGCGCGACTTTATTTGCAATT 58.741 42.857 12.10 0.00 0.00 2.32
4857 6215 6.472016 AGAGAAGAGAAACTTGATTCCCTTC 58.528 40.000 6.74 6.74 41.71 3.46
5053 6411 1.028905 GTGGTTGTGTAGCTTTGCCA 58.971 50.000 0.00 0.00 0.00 4.92
5254 6612 6.319152 TCAGTAGCTACCTGATGACTAACTTC 59.681 42.308 20.31 0.00 0.00 3.01
5255 6613 6.188407 TCAGTAGCTACCTGATGACTAACTT 58.812 40.000 20.31 0.00 0.00 2.66
5258 6616 5.066117 CGTTCAGTAGCTACCTGATGACTAA 59.934 44.000 20.31 5.02 0.00 2.24
5275 6636 2.036475 ACATCTGCTCTTCACGTTCAGT 59.964 45.455 0.00 0.00 0.00 3.41
5316 6969 3.677002 GCTGCTATCCAGACACTCC 57.323 57.895 0.00 0.00 44.64 3.85
5373 7034 2.025416 TGAGGGAGAAGAGACCTGAGAG 60.025 54.545 0.00 0.00 34.02 3.20
5398 7059 2.902486 ACCTTGCTGATGAGAGAGAACA 59.098 45.455 0.00 0.00 0.00 3.18
5524 7208 0.394080 GAGCCCAGAAGCATGCTCTT 60.394 55.000 22.93 6.03 45.21 2.85
5560 7244 1.069978 TGTTTGAGCTCATCACCGTGA 59.930 47.619 19.04 3.10 37.77 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.