Multiple sequence alignment - TraesCS7B01G364400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G364400 chr7B 100.000 7766 0 0 1 7766 627310264 627302499 0.000000e+00 14342.0
1 TraesCS7B01G364400 chr7B 80.097 1864 343 27 4924 6772 718836179 718834329 0.000000e+00 1362.0
2 TraesCS7B01G364400 chr7B 77.771 1678 360 6 5009 6678 718146409 718148081 0.000000e+00 1020.0
3 TraesCS7B01G364400 chr7B 81.283 1122 165 28 994 2094 718136298 718137395 0.000000e+00 867.0
4 TraesCS7B01G364400 chr7B 81.738 679 110 8 3024 3698 718838033 718837365 8.800000e-154 555.0
5 TraesCS7B01G364400 chr7B 75.267 562 112 23 1544 2093 750031912 750032458 7.790000e-60 243.0
6 TraesCS7B01G364400 chr7B 81.081 259 45 3 4855 5110 719985002 719985259 3.670000e-48 204.0
7 TraesCS7B01G364400 chr7B 71.859 764 184 21 1001 1755 750056837 750057578 2.860000e-44 191.0
8 TraesCS7B01G364400 chr7B 93.548 124 7 1 3823 3946 457251640 457251518 4.790000e-42 183.0
9 TraesCS7B01G364400 chr7B 88.976 127 12 2 272 398 740997354 740997230 1.040000e-33 156.0
10 TraesCS7B01G364400 chr7B 83.916 143 16 6 4000 4141 627306116 627305980 6.320000e-26 130.0
11 TraesCS7B01G364400 chr7B 83.916 143 16 6 4149 4285 627306265 627306124 6.320000e-26 130.0
12 TraesCS7B01G364400 chr7A 91.895 3467 179 41 391 3821 660459907 660456507 0.000000e+00 4752.0
13 TraesCS7B01G364400 chr7A 96.032 1890 72 1 4916 6802 660456169 660454280 0.000000e+00 3072.0
14 TraesCS7B01G364400 chr7A 80.023 1737 336 11 5021 6750 716417917 716419649 0.000000e+00 1275.0
15 TraesCS7B01G364400 chr7A 78.633 1390 280 17 5393 6772 716426554 716427936 0.000000e+00 905.0
16 TraesCS7B01G364400 chr7A 83.856 638 98 4 1505 2138 716415816 716416452 3.100000e-168 603.0
17 TraesCS7B01G364400 chr7A 94.167 240 12 1 3963 4200 660456418 660456179 1.590000e-96 364.0
18 TraesCS7B01G364400 chr7A 72.695 1128 248 40 997 2094 733350713 733349616 9.720000e-84 322.0
19 TraesCS7B01G364400 chr7A 71.936 1126 250 45 1000 2089 733368238 733367143 1.280000e-67 268.0
20 TraesCS7B01G364400 chr7A 71.594 1123 249 49 997 2084 717841335 717842422 7.790000e-60 243.0
21 TraesCS7B01G364400 chr7A 84.028 144 15 5 4149 4285 660456381 660456239 1.760000e-26 132.0
22 TraesCS7B01G364400 chr7A 73.720 293 66 7 992 1282 709893205 709892922 3.830000e-18 104.0
23 TraesCS7B01G364400 chr7D 91.560 3448 199 37 403 3821 571265377 571261993 0.000000e+00 4671.0
24 TraesCS7B01G364400 chr7D 96.680 2048 67 1 4855 6902 571260873 571258827 0.000000e+00 3404.0
25 TraesCS7B01G364400 chr7D 80.915 2012 356 24 4759 6754 621296634 621298633 0.000000e+00 1563.0
26 TraesCS7B01G364400 chr7D 92.625 922 46 13 6852 7766 571258835 571257929 0.000000e+00 1306.0
27 TraesCS7B01G364400 chr7D 93.990 832 32 4 4027 4844 571261869 571261042 0.000000e+00 1243.0
28 TraesCS7B01G364400 chr7D 77.847 1774 370 17 4945 6708 621734711 621732951 0.000000e+00 1077.0
29 TraesCS7B01G364400 chr7D 81.200 1117 167 27 993 2089 621739988 621738895 0.000000e+00 859.0
30 TraesCS7B01G364400 chr7D 78.497 1158 187 42 996 2119 621293772 621294901 0.000000e+00 702.0
31 TraesCS7B01G364400 chr7D 83.715 743 115 2 2989 3725 621295259 621296001 0.000000e+00 697.0
32 TraesCS7B01G364400 chr7D 76.015 1059 241 10 5114 6168 622130051 622131100 3.190000e-148 536.0
33 TraesCS7B01G364400 chr7D 79.155 734 138 11 2963 3690 621737855 621737131 1.950000e-135 494.0
34 TraesCS7B01G364400 chr7D 74.202 1159 259 30 5093 6228 633595493 633596634 1.540000e-121 448.0
35 TraesCS7B01G364400 chr7D 94.355 124 7 0 3823 3946 35553868 35553745 2.860000e-44 191.0
36 TraesCS7B01G364400 chr7D 92.683 123 9 0 3823 3945 177466811 177466689 2.230000e-40 178.0
37 TraesCS7B01G364400 chr7D 78.548 303 38 13 1 277 571265905 571265604 2.880000e-39 174.0
38 TraesCS7B01G364400 chr7D 79.134 254 49 3 4855 5105 622128230 622128482 1.040000e-38 172.0
39 TraesCS7B01G364400 chr7D 90.678 118 11 0 276 393 554584160 554584277 2.900000e-34 158.0
40 TraesCS7B01G364400 chr7D 83.916 143 16 6 4000 4141 571261747 571261611 6.320000e-26 130.0
41 TraesCS7B01G364400 chr7D 82.895 152 7 12 488 634 571266337 571266200 1.370000e-22 119.0
42 TraesCS7B01G364400 chr7D 78.102 137 28 2 6009 6144 622221702 622221837 1.390000e-12 86.1
43 TraesCS7B01G364400 chr7D 93.182 44 3 0 3952 3995 571261911 571261868 1.810000e-06 65.8
44 TraesCS7B01G364400 chr1A 80.833 1393 242 19 4986 6361 59221475 59222859 0.000000e+00 1070.0
45 TraesCS7B01G364400 chr1A 85.017 287 43 0 3396 3682 59216467 59216753 7.620000e-75 292.0
46 TraesCS7B01G364400 chr2D 76.626 1322 268 28 5013 6312 11064354 11063052 0.000000e+00 691.0
47 TraesCS7B01G364400 chr2D 76.917 1239 261 19 5016 6240 620324275 620323048 0.000000e+00 680.0
48 TraesCS7B01G364400 chr2D 72.353 1143 241 51 996 2090 11068224 11067109 2.740000e-74 291.0
49 TraesCS7B01G364400 chr2D 94.309 123 7 0 3823 3945 445616982 445616860 1.030000e-43 189.0
50 TraesCS7B01G364400 chr2D 93.496 123 8 0 3823 3945 106457045 106457167 4.790000e-42 183.0
51 TraesCS7B01G364400 chr2D 93.496 123 8 0 3823 3945 151333921 151333799 4.790000e-42 183.0
52 TraesCS7B01G364400 chr3D 73.512 823 184 28 5129 5931 533940388 533941196 1.650000e-71 281.0
53 TraesCS7B01G364400 chr4B 92.857 140 8 2 3823 3961 179836909 179837047 1.320000e-47 202.0
54 TraesCS7B01G364400 chr4B 91.453 117 10 0 276 392 608968628 608968744 2.240000e-35 161.0
55 TraesCS7B01G364400 chr4D 93.496 123 8 0 3823 3945 502993064 502993186 4.790000e-42 183.0
56 TraesCS7B01G364400 chr6B 92.683 123 9 0 3823 3945 664692385 664692507 2.230000e-40 178.0
57 TraesCS7B01G364400 chr6A 90.476 126 12 0 273 398 551091748 551091873 4.820000e-37 167.0
58 TraesCS7B01G364400 chr3A 89.600 125 13 0 273 397 145617227 145617103 8.070000e-35 159.0
59 TraesCS7B01G364400 chr1B 90.833 120 10 1 276 395 101238357 101238239 8.070000e-35 159.0
60 TraesCS7B01G364400 chr1B 90.756 119 11 0 274 392 295294934 295295052 8.070000e-35 159.0
61 TraesCS7B01G364400 chr5B 90.000 120 12 0 276 395 614065045 614065164 1.040000e-33 156.0
62 TraesCS7B01G364400 chr5B 82.075 106 13 3 115 216 671868895 671868998 1.390000e-12 86.1
63 TraesCS7B01G364400 chr4A 90.000 120 12 0 276 395 339623888 339623769 1.040000e-33 156.0
64 TraesCS7B01G364400 chr5D 84.956 113 15 2 80 192 176108480 176108590 6.370000e-21 113.0
65 TraesCS7B01G364400 chr2A 78.571 126 22 5 3259 3381 633844 633721 2.320000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G364400 chr7B 627302499 627310264 7765 True 14342.000000 14342 100.000000 1 7766 1 chr7B.!!$R2 7765
1 TraesCS7B01G364400 chr7B 718146409 718148081 1672 False 1020.000000 1020 77.771000 5009 6678 1 chr7B.!!$F2 1669
2 TraesCS7B01G364400 chr7B 718834329 718838033 3704 True 958.500000 1362 80.917500 3024 6772 2 chr7B.!!$R5 3748
3 TraesCS7B01G364400 chr7B 718136298 718137395 1097 False 867.000000 867 81.283000 994 2094 1 chr7B.!!$F1 1100
4 TraesCS7B01G364400 chr7B 750031912 750032458 546 False 243.000000 243 75.267000 1544 2093 1 chr7B.!!$F4 549
5 TraesCS7B01G364400 chr7A 660454280 660459907 5627 True 2080.000000 4752 91.530500 391 6802 4 chr7A.!!$R4 6411
6 TraesCS7B01G364400 chr7A 716415816 716419649 3833 False 939.000000 1275 81.939500 1505 6750 2 chr7A.!!$F3 5245
7 TraesCS7B01G364400 chr7A 716426554 716427936 1382 False 905.000000 905 78.633000 5393 6772 1 chr7A.!!$F1 1379
8 TraesCS7B01G364400 chr7A 733349616 733350713 1097 True 322.000000 322 72.695000 997 2094 1 chr7A.!!$R2 1097
9 TraesCS7B01G364400 chr7A 733367143 733368238 1095 True 268.000000 268 71.936000 1000 2089 1 chr7A.!!$R3 1089
10 TraesCS7B01G364400 chr7A 717841335 717842422 1087 False 243.000000 243 71.594000 997 2084 1 chr7A.!!$F2 1087
11 TraesCS7B01G364400 chr7D 571257929 571266337 8408 True 1389.100000 4671 89.174500 1 7766 8 chr7D.!!$R3 7765
12 TraesCS7B01G364400 chr7D 621293772 621298633 4861 False 987.333333 1563 81.042333 996 6754 3 chr7D.!!$F4 5758
13 TraesCS7B01G364400 chr7D 621732951 621739988 7037 True 810.000000 1077 79.400667 993 6708 3 chr7D.!!$R4 5715
14 TraesCS7B01G364400 chr7D 633595493 633596634 1141 False 448.000000 448 74.202000 5093 6228 1 chr7D.!!$F3 1135
15 TraesCS7B01G364400 chr7D 622128230 622131100 2870 False 354.000000 536 77.574500 4855 6168 2 chr7D.!!$F5 1313
16 TraesCS7B01G364400 chr1A 59221475 59222859 1384 False 1070.000000 1070 80.833000 4986 6361 1 chr1A.!!$F2 1375
17 TraesCS7B01G364400 chr2D 620323048 620324275 1227 True 680.000000 680 76.917000 5016 6240 1 chr2D.!!$R3 1224
18 TraesCS7B01G364400 chr2D 11063052 11068224 5172 True 491.000000 691 74.489500 996 6312 2 chr2D.!!$R4 5316
19 TraesCS7B01G364400 chr3D 533940388 533941196 808 False 281.000000 281 73.512000 5129 5931 1 chr3D.!!$F1 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 1408 0.036010 CACCATTTCCCTCTCTGCGT 60.036 55.000 0.00 0.00 0.00 5.24 F
837 1424 0.529992 GCGTAACAGAGGGATTCGGG 60.530 60.000 0.00 0.00 0.00 5.14 F
922 1509 0.745128 CCGTAAATGGCGCCTGGTTA 60.745 55.000 29.70 19.02 0.00 2.85 F
970 1559 0.873312 CATGACCCGCTCATCTCACG 60.873 60.000 0.00 0.00 37.53 4.35 F
979 1568 1.334599 GCTCATCTCACGGATCGAGAC 60.335 57.143 1.44 0.00 42.12 3.36 F
2010 2709 1.985473 TTGAGATTGCAAGCCTGTGT 58.015 45.000 11.83 0.00 0.00 3.72 F
3879 5975 0.258484 CCTATGACATGTGGGCCCAA 59.742 55.000 30.64 17.87 0.00 4.12 F
3940 6036 0.166814 CTTTACGGCACTGAAGCTGC 59.833 55.000 0.00 0.00 44.76 5.25 F
3949 6045 0.185901 ACTGAAGCTGCCTCCCAAAA 59.814 50.000 0.00 0.00 0.00 2.44 F
3950 6046 0.600057 CTGAAGCTGCCTCCCAAAAC 59.400 55.000 0.00 0.00 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2478 1.623163 TCGTCAGGACATGTACACCA 58.377 50.000 11.55 0.0 0.00 4.17 R
2010 2709 2.502130 TGGTTGGTAAGCATGTCCGATA 59.498 45.455 0.00 0.0 33.29 2.92 R
2363 3449 3.512724 TGATGTGATCAACTCTGCTCTGA 59.487 43.478 0.00 0.0 36.11 3.27 R
2706 4226 3.667476 TGGCAGGTCCAGGTTTCA 58.333 55.556 0.00 0.0 40.72 2.69 R
2773 4320 5.130477 TGAAACTGGAGTTCTTAGTGGACTT 59.870 40.000 0.00 0.0 37.25 3.01 R
3921 6017 0.166814 GCAGCTTCAGTGCCGTAAAG 59.833 55.000 0.00 0.0 34.67 1.85 R
5665 11869 2.680339 GCAGCCTCATACTTTTGGAGAC 59.320 50.000 0.00 0.0 0.00 3.36 R
5907 12114 1.110518 TGCCGGCGTGGATATACTGA 61.111 55.000 23.90 0.0 42.00 3.41 R
6146 12365 3.268023 AGTCCTTGCTGTTATGCCTAC 57.732 47.619 0.00 0.0 0.00 3.18 R
6802 13042 0.101399 ATCAGAGCTCGTGGTAAGCG 59.899 55.000 8.37 0.0 44.59 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 495 8.463930 AAATTAGGTTCACATTTGACTTCTGA 57.536 30.769 0.00 0.00 0.00 3.27
64 498 6.566197 AGGTTCACATTTGACTTCTGATTC 57.434 37.500 0.00 0.00 0.00 2.52
91 525 0.464373 AATGAGTAGCCCGGTGCATG 60.464 55.000 15.92 0.00 44.83 4.06
92 526 1.626356 ATGAGTAGCCCGGTGCATGT 61.626 55.000 15.92 1.11 44.83 3.21
97 531 2.028125 TAGCCCGGTGCATGTAGCTC 62.028 60.000 15.92 0.78 45.94 4.09
104 538 2.691409 GTGCATGTAGCTCCCACTTA 57.309 50.000 0.00 0.00 45.94 2.24
107 541 2.093500 TGCATGTAGCTCCCACTTACAG 60.093 50.000 0.00 0.00 45.94 2.74
108 542 2.093447 GCATGTAGCTCCCACTTACAGT 60.093 50.000 0.00 0.00 41.15 3.55
109 543 3.132289 GCATGTAGCTCCCACTTACAGTA 59.868 47.826 0.00 0.00 41.15 2.74
120 555 3.007182 CCACTTACAGTAGTCCGGGAAAA 59.993 47.826 0.00 0.00 0.00 2.29
148 583 4.402056 ACCACTTTGGGTCTATCATACG 57.598 45.455 0.00 0.00 43.37 3.06
149 584 3.131396 CCACTTTGGGTCTATCATACGC 58.869 50.000 0.00 0.00 32.67 4.42
152 587 7.644503 CCACTTTGGGTCTATCATACGCAGT 62.645 48.000 0.00 0.00 40.36 4.40
153 588 8.351111 CCACTTTGGGTCTATCATACGCAGTA 62.351 46.154 0.00 0.00 40.09 2.74
175 610 7.067372 CAGTATTTCCCTGCATTTCTACATGAA 59.933 37.037 0.00 0.00 0.00 2.57
183 618 6.583806 CCTGCATTTCTACATGAAACTGTTTC 59.416 38.462 22.94 22.94 46.08 2.78
186 621 6.922957 GCATTTCTACATGAAACTGTTTCCAA 59.077 34.615 25.66 12.19 46.08 3.53
187 622 7.115378 GCATTTCTACATGAAACTGTTTCCAAG 59.885 37.037 25.66 18.36 46.08 3.61
188 623 7.873719 TTTCTACATGAAACTGTTTCCAAGA 57.126 32.000 25.66 19.34 39.50 3.02
189 624 6.861065 TCTACATGAAACTGTTTCCAAGAC 57.139 37.500 25.66 5.77 38.90 3.01
191 626 5.757850 ACATGAAACTGTTTCCAAGACTC 57.242 39.130 25.66 4.52 38.90 3.36
192 627 4.580580 ACATGAAACTGTTTCCAAGACTCC 59.419 41.667 25.66 3.82 38.90 3.85
194 629 2.256117 AACTGTTTCCAAGACTCCCG 57.744 50.000 0.00 0.00 0.00 5.14
195 630 1.129058 ACTGTTTCCAAGACTCCCGT 58.871 50.000 0.00 0.00 0.00 5.28
197 632 1.070134 CTGTTTCCAAGACTCCCGTGA 59.930 52.381 0.00 0.00 0.00 4.35
199 634 0.395312 TTTCCAAGACTCCCGTGACC 59.605 55.000 0.00 0.00 0.00 4.02
200 635 0.471211 TTCCAAGACTCCCGTGACCT 60.471 55.000 0.00 0.00 0.00 3.85
203 638 1.546961 CAAGACTCCCGTGACCTAGT 58.453 55.000 0.00 0.00 0.00 2.57
204 639 1.202582 CAAGACTCCCGTGACCTAGTG 59.797 57.143 0.00 0.00 0.00 2.74
205 640 0.323542 AGACTCCCGTGACCTAGTGG 60.324 60.000 0.00 0.00 39.83 4.00
227 684 1.004044 CACCAAGGCTCCTCTTCATGT 59.996 52.381 0.00 0.00 0.00 3.21
232 689 1.988107 AGGCTCCTCTTCATGTTTGGA 59.012 47.619 0.00 0.00 0.00 3.53
279 737 9.267084 TGTTAATTTTTCCTTTGCCAATTACTC 57.733 29.630 0.00 0.00 0.00 2.59
280 738 9.489084 GTTAATTTTTCCTTTGCCAATTACTCT 57.511 29.630 0.00 0.00 0.00 3.24
282 740 8.978874 AATTTTTCCTTTGCCAATTACTCTTT 57.021 26.923 0.00 0.00 0.00 2.52
283 741 8.607441 ATTTTTCCTTTGCCAATTACTCTTTC 57.393 30.769 0.00 0.00 0.00 2.62
284 742 5.722021 TTCCTTTGCCAATTACTCTTTCC 57.278 39.130 0.00 0.00 0.00 3.13
285 743 3.756434 TCCTTTGCCAATTACTCTTTCCG 59.244 43.478 0.00 0.00 0.00 4.30
286 744 3.506067 CCTTTGCCAATTACTCTTTCCGT 59.494 43.478 0.00 0.00 0.00 4.69
287 745 4.022329 CCTTTGCCAATTACTCTTTCCGTT 60.022 41.667 0.00 0.00 0.00 4.44
288 746 4.759516 TTGCCAATTACTCTTTCCGTTC 57.240 40.909 0.00 0.00 0.00 3.95
289 747 3.745799 TGCCAATTACTCTTTCCGTTCA 58.254 40.909 0.00 0.00 0.00 3.18
290 748 3.751175 TGCCAATTACTCTTTCCGTTCAG 59.249 43.478 0.00 0.00 0.00 3.02
292 750 4.454504 GCCAATTACTCTTTCCGTTCAGAA 59.545 41.667 0.00 0.00 0.00 3.02
295 753 7.148306 GCCAATTACTCTTTCCGTTCAGAAATA 60.148 37.037 0.00 0.00 35.30 1.40
298 756 9.503399 AATTACTCTTTCCGTTCAGAAATACTT 57.497 29.630 0.00 0.00 35.30 2.24
299 757 6.787085 ACTCTTTCCGTTCAGAAATACTTG 57.213 37.500 0.00 0.00 35.30 3.16
300 758 6.289064 ACTCTTTCCGTTCAGAAATACTTGT 58.711 36.000 0.00 0.00 35.30 3.16
301 759 6.424207 ACTCTTTCCGTTCAGAAATACTTGTC 59.576 38.462 0.00 0.00 35.30 3.18
305 763 6.480524 TCCGTTCAGAAATACTTGTCATTG 57.519 37.500 0.00 0.00 0.00 2.82
306 764 6.227522 TCCGTTCAGAAATACTTGTCATTGA 58.772 36.000 0.00 0.00 0.00 2.57
307 765 6.708502 TCCGTTCAGAAATACTTGTCATTGAA 59.291 34.615 0.00 0.00 0.00 2.69
309 767 8.023128 CCGTTCAGAAATACTTGTCATTGAAAT 58.977 33.333 0.00 0.00 0.00 2.17
310 768 8.843733 CGTTCAGAAATACTTGTCATTGAAATG 58.156 33.333 0.00 0.00 37.75 2.32
311 769 9.897744 GTTCAGAAATACTTGTCATTGAAATGA 57.102 29.630 1.55 1.55 42.78 2.57
377 835 9.859427 TCATTCATTTTGATGACAAGTAATTCC 57.141 29.630 0.00 0.00 37.32 3.01
378 836 8.800972 CATTCATTTTGATGACAAGTAATTCCG 58.199 33.333 0.00 0.00 37.32 4.30
380 838 6.657117 TCATTTTGATGACAAGTAATTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
381 839 7.339212 TCATTTTGATGACAAGTAATTCCGGAT 59.661 33.333 4.15 0.00 37.32 4.18
383 841 4.450976 TGATGACAAGTAATTCCGGATGG 58.549 43.478 4.15 0.00 0.00 3.51
384 842 4.163268 TGATGACAAGTAATTCCGGATGGA 59.837 41.667 4.15 0.00 44.61 3.41
385 843 8.543352 TTTGATGACAAGTAATTCCGGATGGAG 61.543 40.741 4.15 0.00 40.39 3.86
412 971 7.282332 AGTAGTAATATACGAACCACCTTCC 57.718 40.000 0.00 0.00 0.00 3.46
430 989 5.245977 ACCTTCCACATTAAGAAACATTGGG 59.754 40.000 0.00 0.00 0.00 4.12
431 990 5.337491 CCTTCCACATTAAGAAACATTGGGG 60.337 44.000 0.00 0.00 31.92 4.96
432 991 4.093011 TCCACATTAAGAAACATTGGGGG 58.907 43.478 0.00 0.00 31.57 5.40
483 1042 5.527214 TGCACGGTGATAAGAAATGATAAGG 59.473 40.000 13.29 0.00 0.00 2.69
507 1067 8.282256 AGGAAATAAAGAGTTAACCATATGGCT 58.718 33.333 22.18 12.58 39.32 4.75
529 1089 4.508551 AGTCAATGGCTGGTCAATGATA 57.491 40.909 0.00 0.00 30.46 2.15
548 1108 1.137697 AAAGTCCACCCTTCGGTCTT 58.862 50.000 0.00 0.00 42.04 3.01
549 1109 0.685660 AAGTCCACCCTTCGGTCTTC 59.314 55.000 0.00 0.00 42.04 2.87
550 1110 1.192803 AGTCCACCCTTCGGTCTTCC 61.193 60.000 0.00 0.00 42.04 3.46
551 1111 1.157751 TCCACCCTTCGGTCTTCCT 59.842 57.895 0.00 0.00 42.04 3.36
552 1112 0.903454 TCCACCCTTCGGTCTTCCTC 60.903 60.000 0.00 0.00 42.04 3.71
553 1113 0.905337 CCACCCTTCGGTCTTCCTCT 60.905 60.000 0.00 0.00 42.04 3.69
554 1114 0.977395 CACCCTTCGGTCTTCCTCTT 59.023 55.000 0.00 0.00 42.04 2.85
555 1115 1.066787 CACCCTTCGGTCTTCCTCTTC 60.067 57.143 0.00 0.00 42.04 2.87
556 1116 0.173708 CCCTTCGGTCTTCCTCTTCG 59.826 60.000 0.00 0.00 0.00 3.79
557 1117 0.173708 CCTTCGGTCTTCCTCTTCGG 59.826 60.000 0.00 0.00 0.00 4.30
558 1118 0.889306 CTTCGGTCTTCCTCTTCGGT 59.111 55.000 0.00 0.00 0.00 4.69
559 1119 0.886563 TTCGGTCTTCCTCTTCGGTC 59.113 55.000 0.00 0.00 0.00 4.79
560 1120 0.037877 TCGGTCTTCCTCTTCGGTCT 59.962 55.000 0.00 0.00 0.00 3.85
636 1213 2.228582 CACTGAGTCACTGGTCTCTCTG 59.771 54.545 0.00 0.00 31.53 3.35
644 1221 1.228894 TGGTCTCTCTGCCGGTCTT 60.229 57.895 1.90 0.00 0.00 3.01
648 1225 1.984570 CTCTCTGCCGGTCTTCCCA 60.985 63.158 1.90 0.00 0.00 4.37
662 1239 3.866582 CCCACTCCTCGGCCATCC 61.867 72.222 2.24 0.00 0.00 3.51
779 1366 1.984570 CTGGGGTCAGGCGAGAGAA 60.985 63.158 0.00 0.00 37.36 2.87
787 1374 1.380650 AGGCGAGAGAAGGAGACCC 60.381 63.158 0.00 0.00 0.00 4.46
792 1379 1.645710 GAGAGAAGGAGACCCACCAA 58.354 55.000 0.00 0.00 33.88 3.67
821 1408 0.036010 CACCATTTCCCTCTCTGCGT 60.036 55.000 0.00 0.00 0.00 5.24
837 1424 0.529992 GCGTAACAGAGGGATTCGGG 60.530 60.000 0.00 0.00 0.00 5.14
862 1449 4.303603 CGCATCGCCATTGCTCGG 62.304 66.667 0.00 0.00 37.96 4.63
863 1450 3.957535 GCATCGCCATTGCTCGGG 61.958 66.667 0.00 0.00 37.14 5.14
864 1451 2.203056 CATCGCCATTGCTCGGGA 60.203 61.111 0.00 0.00 34.43 5.14
865 1452 2.203070 ATCGCCATTGCTCGGGAC 60.203 61.111 0.00 0.00 34.43 4.46
866 1453 2.735772 ATCGCCATTGCTCGGGACT 61.736 57.895 0.00 0.00 34.43 3.85
867 1454 2.650813 ATCGCCATTGCTCGGGACTC 62.651 60.000 0.00 0.00 34.43 3.36
868 1455 2.892425 GCCATTGCTCGGGACTCG 60.892 66.667 0.00 0.00 40.90 4.18
922 1509 0.745128 CCGTAAATGGCGCCTGGTTA 60.745 55.000 29.70 19.02 0.00 2.85
934 1521 3.000177 GCGCCTGGTTAATTTAATTTGCG 60.000 43.478 0.00 15.05 41.04 4.85
945 1534 5.888412 ATTTAATTTGCGAATGCCGATTC 57.112 34.783 0.00 0.00 41.78 2.52
955 1544 2.936919 ATGCCGATTCTAAGCCATGA 57.063 45.000 0.00 0.00 0.00 3.07
970 1559 0.873312 CATGACCCGCTCATCTCACG 60.873 60.000 0.00 0.00 37.53 4.35
979 1568 1.334599 GCTCATCTCACGGATCGAGAC 60.335 57.143 1.44 0.00 42.12 3.36
988 1577 2.725312 GGATCGAGACAGCCAGCCA 61.725 63.158 0.00 0.00 0.00 4.75
1791 2478 2.613977 CGACAAGGAAGGAGCAGATGTT 60.614 50.000 0.00 0.00 0.00 2.71
2010 2709 1.985473 TTGAGATTGCAAGCCTGTGT 58.015 45.000 11.83 0.00 0.00 3.72
2139 3023 9.667989 AGTTACGTTTGCGAAATATTTTTAACT 57.332 25.926 1.43 3.83 42.00 2.24
2190 3174 5.027293 TCTGGACATGATCACAATACCAG 57.973 43.478 20.46 20.46 40.68 4.00
2192 3176 5.660864 TCTGGACATGATCACAATACCAGTA 59.339 40.000 23.08 14.11 40.46 2.74
2193 3177 6.156083 TCTGGACATGATCACAATACCAGTAA 59.844 38.462 23.08 11.52 40.46 2.24
2194 3178 6.112734 TGGACATGATCACAATACCAGTAAC 58.887 40.000 0.00 0.00 0.00 2.50
2197 3181 7.438459 GGACATGATCACAATACCAGTAACTAC 59.562 40.741 0.00 0.00 0.00 2.73
2223 3207 9.132521 CCTTTGATCATTTTTGTACATGTCTTC 57.867 33.333 0.00 0.00 0.00 2.87
2229 3213 6.367695 TCATTTTTGTACATGTCTTCGTCGAT 59.632 34.615 0.00 0.00 0.00 3.59
2277 3261 7.976135 AACCTATGATAGAATTGTCATCTGC 57.024 36.000 0.00 0.00 36.64 4.26
2280 3264 7.110810 CCTATGATAGAATTGTCATCTGCCAT 58.889 38.462 0.00 0.00 36.64 4.40
2281 3265 6.819397 ATGATAGAATTGTCATCTGCCATG 57.181 37.500 0.00 0.00 30.23 3.66
2293 3277 6.039829 TGTCATCTGCCATGTCTAGTTAGTAG 59.960 42.308 0.00 0.00 0.00 2.57
2296 3280 6.939132 TCTGCCATGTCTAGTTAGTAGTAC 57.061 41.667 0.00 0.00 0.00 2.73
2355 3441 7.972277 CACTGCACTTAATGAATTGCTTAATCT 59.028 33.333 6.68 0.00 40.81 2.40
2369 3455 6.615264 TGCTTAATCTTTGATCATCAGAGC 57.385 37.500 0.00 8.51 29.57 4.09
2376 3462 5.176592 TCTTTGATCATCAGAGCAGAGTTG 58.823 41.667 0.00 0.00 41.81 3.16
2423 3840 8.966069 TTTCATATGATGGTTAACAACGGATA 57.034 30.769 6.17 0.00 0.00 2.59
2472 3906 5.529800 ACACCTACAACTGTATTGGTTTGTC 59.470 40.000 0.00 0.00 29.72 3.18
2515 3952 5.118050 CACATGCAAGCAAACAGTGATTTAG 59.882 40.000 0.00 0.00 32.10 1.85
2523 3960 6.125029 AGCAAACAGTGATTTAGCCTCATAT 58.875 36.000 0.00 0.00 0.00 1.78
2586 4024 6.709018 AGTGTTTATTAGTTGGTGCAGTTT 57.291 33.333 0.00 0.00 0.00 2.66
2587 4025 7.107639 AGTGTTTATTAGTTGGTGCAGTTTT 57.892 32.000 0.00 0.00 0.00 2.43
2743 4289 6.973843 TGCCACTGAATGCAATAAAGATATC 58.026 36.000 0.00 0.00 33.87 1.63
2778 4325 9.561069 AAATATACATCAATGTCCACTAAGTCC 57.439 33.333 0.00 0.00 41.97 3.85
2779 4326 4.908601 ACATCAATGTCCACTAAGTCCA 57.091 40.909 0.00 0.00 35.87 4.02
2914 4470 2.230653 CCCCAGGTCCCATGTGTCA 61.231 63.158 0.00 0.00 0.00 3.58
3036 4611 5.760253 CAGTCCTTGTGTGTTAACATCTCTT 59.240 40.000 12.26 0.00 38.92 2.85
3084 4663 3.149981 GGACCCAAAGAAGAGAAACCAG 58.850 50.000 0.00 0.00 0.00 4.00
3102 4681 0.833287 AGTGGTGTGTGAAGTGAGCT 59.167 50.000 0.00 0.00 0.00 4.09
3109 4688 4.202050 GGTGTGTGAAGTGAGCTCAAATTT 60.202 41.667 20.19 13.28 0.00 1.82
3251 4830 5.122396 ACGTTTCAGCAATTCTCCAGTTATC 59.878 40.000 0.00 0.00 0.00 1.75
3298 4877 5.003804 TGGGAAATCAGCTCTTGTTAGAAC 58.996 41.667 0.00 0.00 0.00 3.01
3443 5025 2.222027 GATCCCATTAAAGAGTGCCGG 58.778 52.381 0.00 0.00 0.00 6.13
3614 5199 3.189702 GCACAAATAACGAAGGGCAAGTA 59.810 43.478 0.00 0.00 0.00 2.24
3719 5306 5.041191 AGCTTCTCTTTGTTCTTTGAGGA 57.959 39.130 0.00 0.00 0.00 3.71
3782 5503 6.016443 TCACAAACATAACACTTCATGCATGA 60.016 34.615 25.42 25.42 31.45 3.07
3791 5512 3.918591 CACTTCATGCATGAGTTTGCTTC 59.081 43.478 27.25 0.00 43.18 3.86
3821 5848 7.279615 TCCTTCACTCACAGAATCAAAACTAA 58.720 34.615 0.00 0.00 0.00 2.24
3822 5849 7.442364 TCCTTCACTCACAGAATCAAAACTAAG 59.558 37.037 0.00 0.00 0.00 2.18
3823 5850 7.308229 CCTTCACTCACAGAATCAAAACTAAGG 60.308 40.741 0.00 0.00 0.00 2.69
3827 5854 6.708054 ACTCACAGAATCAAAACTAAGGACTG 59.292 38.462 0.00 0.00 0.00 3.51
3828 5855 5.470098 TCACAGAATCAAAACTAAGGACTGC 59.530 40.000 0.00 0.00 0.00 4.40
3830 5857 3.437049 AGAATCAAAACTAAGGACTGCGC 59.563 43.478 0.00 0.00 0.00 6.09
3832 5859 2.846193 TCAAAACTAAGGACTGCGCTT 58.154 42.857 9.73 0.00 0.00 4.68
3834 5861 1.429463 AAACTAAGGACTGCGCTTCG 58.571 50.000 9.73 0.00 0.00 3.79
3835 5862 0.389948 AACTAAGGACTGCGCTTCGG 60.390 55.000 9.73 0.00 0.00 4.30
3836 5863 1.215647 CTAAGGACTGCGCTTCGGT 59.784 57.895 9.73 1.93 36.89 4.69
3837 5864 1.078759 CTAAGGACTGCGCTTCGGTG 61.079 60.000 9.73 0.00 33.57 4.94
3844 5871 2.785258 GCGCTTCGGTGCCTTAAG 59.215 61.111 0.00 0.00 44.83 1.85
3845 5872 2.750888 GCGCTTCGGTGCCTTAAGG 61.751 63.158 17.81 17.81 44.83 2.69
3870 5966 2.093890 TGCCTTTGTGCCTATGACATG 58.906 47.619 0.00 0.00 0.00 3.21
3876 5972 1.103398 GTGCCTATGACATGTGGGCC 61.103 60.000 19.32 0.00 41.84 5.80
3877 5973 1.529244 GCCTATGACATGTGGGCCC 60.529 63.158 17.59 17.59 37.12 5.80
3878 5974 1.922057 CCTATGACATGTGGGCCCA 59.078 57.895 24.45 24.45 0.00 5.36
3879 5975 0.258484 CCTATGACATGTGGGCCCAA 59.742 55.000 30.64 17.87 0.00 4.12
3880 5976 1.392589 CTATGACATGTGGGCCCAAC 58.607 55.000 30.64 21.29 0.00 3.77
3882 5978 0.612732 ATGACATGTGGGCCCAACAG 60.613 55.000 30.64 21.28 0.00 3.16
3884 5980 2.118076 CATGTGGGCCCAACAGGT 59.882 61.111 30.64 10.25 38.26 4.00
3893 5989 4.601794 CCAACAGGTGGCTGGCCA 62.602 66.667 10.55 10.55 41.72 5.36
3907 6003 3.070576 GCCAACATGCCAGGGACC 61.071 66.667 0.00 0.00 0.00 4.46
3908 6004 2.362889 CCAACATGCCAGGGACCC 60.363 66.667 0.59 0.59 0.00 4.46
3909 6005 2.440147 CAACATGCCAGGGACCCA 59.560 61.111 14.60 0.00 0.00 4.51
3910 6006 1.228831 CAACATGCCAGGGACCCAA 60.229 57.895 14.60 0.00 0.00 4.12
3911 6007 0.831288 CAACATGCCAGGGACCCAAA 60.831 55.000 14.60 0.00 0.00 3.28
3912 6008 0.542702 AACATGCCAGGGACCCAAAG 60.543 55.000 14.60 1.24 0.00 2.77
3913 6009 1.683365 CATGCCAGGGACCCAAAGG 60.683 63.158 14.60 12.68 40.04 3.11
3914 6010 3.607084 ATGCCAGGGACCCAAAGGC 62.607 63.158 26.44 26.44 45.41 4.35
3915 6011 4.299796 GCCAGGGACCCAAAGGCA 62.300 66.667 27.57 0.00 44.59 4.75
3916 6012 2.036256 CCAGGGACCCAAAGGCAG 59.964 66.667 14.60 0.00 36.11 4.85
3917 6013 2.036256 CAGGGACCCAAAGGCAGG 59.964 66.667 14.60 0.00 36.11 4.85
3919 6015 2.283173 GGGACCCAAAGGCAGGTG 60.283 66.667 5.33 0.00 36.17 4.00
3938 6034 3.233355 CCTTTACGGCACTGAAGCT 57.767 52.632 0.00 0.00 34.17 3.74
3939 6035 0.798776 CCTTTACGGCACTGAAGCTG 59.201 55.000 0.00 0.00 46.31 4.24
3940 6036 0.166814 CTTTACGGCACTGAAGCTGC 59.833 55.000 0.00 0.00 44.76 5.25
3945 6041 2.749441 GCACTGAAGCTGCCTCCC 60.749 66.667 0.00 0.00 0.00 4.30
3947 6043 1.073722 CACTGAAGCTGCCTCCCAA 59.926 57.895 0.00 0.00 0.00 4.12
3948 6044 0.538057 CACTGAAGCTGCCTCCCAAA 60.538 55.000 0.00 0.00 0.00 3.28
3949 6045 0.185901 ACTGAAGCTGCCTCCCAAAA 59.814 50.000 0.00 0.00 0.00 2.44
3950 6046 0.600057 CTGAAGCTGCCTCCCAAAAC 59.400 55.000 0.00 0.00 0.00 2.43
3984 6369 3.251729 GCCTATGTACATTGGATGCACAG 59.748 47.826 32.29 13.46 39.69 3.66
3988 6373 3.081061 TGTACATTGGATGCACAGAACC 58.919 45.455 0.00 0.00 31.86 3.62
4087 6474 9.575783 TGGAAAATAATAATTCAAAACGGTAGC 57.424 29.630 0.00 0.00 0.00 3.58
4111 6498 9.182214 AGCTGATGTTCAACTTTGATATAATGT 57.818 29.630 0.00 0.00 37.00 2.71
4137 6524 5.302568 TCCTCATGTCACTTGCAGAAAAATT 59.697 36.000 0.00 0.00 0.00 1.82
4312 7886 5.862924 AAAGTATGATGTTCTGTGAACCG 57.137 39.130 7.81 0.00 0.00 4.44
4539 8122 8.691727 CAACGGTAATATCAATAGAAGAAGACG 58.308 37.037 0.00 0.00 0.00 4.18
4723 8488 3.427573 ACATTGTTTAACTAGGGGTGGC 58.572 45.455 0.00 0.00 0.00 5.01
4850 9125 6.376177 CATGCATGTACCATACTATTTGCAG 58.624 40.000 18.91 0.00 32.02 4.41
4853 9128 6.601217 TGCATGTACCATACTATTTGCAGAAA 59.399 34.615 0.00 0.00 0.00 2.52
5315 11507 2.749621 GGTGGATTGCAGAAGGTTACTG 59.250 50.000 0.00 0.00 38.27 2.74
5665 11869 4.009675 TGGAAAGTGGGAATCATTCTTCG 58.990 43.478 0.00 0.00 0.00 3.79
5896 12103 2.758089 CCAGCGAGCATCACAAGGC 61.758 63.158 0.00 0.00 33.17 4.35
6146 12365 1.804372 GCTCGGAGTGTCTGGCATTAG 60.804 57.143 6.90 0.00 0.00 1.73
6261 12492 1.002624 GGACGAAATCACCCTGCCA 60.003 57.895 0.00 0.00 0.00 4.92
6273 12504 1.225704 CCTGCCATGGGAGAACCTC 59.774 63.158 32.96 4.75 41.11 3.85
6400 12640 3.028094 TCGAGTTCCTAGCCAACCTAT 57.972 47.619 0.38 0.00 0.00 2.57
6802 13042 9.185192 CCATCTCTGTTTATTTCACTTGTTTTC 57.815 33.333 0.00 0.00 0.00 2.29
6810 13050 4.966965 TTTCACTTGTTTTCGCTTACCA 57.033 36.364 0.00 0.00 0.00 3.25
6811 13051 3.955771 TCACTTGTTTTCGCTTACCAC 57.044 42.857 0.00 0.00 0.00 4.16
6824 13064 1.751351 CTTACCACGAGCTCTGATCCA 59.249 52.381 12.85 0.00 0.00 3.41
6861 13101 4.338400 GTCCTTCAGCTTGTTTACCTTTGT 59.662 41.667 0.00 0.00 0.00 2.83
6915 13194 6.408035 TCTTGACTGTTACAAGTTACAACCA 58.592 36.000 8.53 0.00 43.30 3.67
6937 13216 5.707298 CCATGTGTTCCTTGAGAAATGTACT 59.293 40.000 0.00 0.00 35.85 2.73
6973 13252 1.563924 TGGGTACTTGGATACGTGCT 58.436 50.000 0.00 0.00 42.51 4.40
6988 13267 1.998315 CGTGCTCATCTTCAAGGTGAG 59.002 52.381 21.79 21.79 41.69 3.51
6990 13269 1.339438 TGCTCATCTTCAAGGTGAGGC 60.339 52.381 26.02 18.75 39.71 4.70
6991 13270 1.339438 GCTCATCTTCAAGGTGAGGCA 60.339 52.381 26.02 0.00 39.71 4.75
7006 13285 1.600957 GAGGCATGGTCGATGTGAATG 59.399 52.381 0.00 0.00 34.14 2.67
7014 13293 2.679837 GGTCGATGTGAATGCTGATGTT 59.320 45.455 0.00 0.00 0.00 2.71
7036 13315 0.320421 GAACGAGCCTGTTACCAGCA 60.320 55.000 0.00 0.00 37.38 4.41
7089 13368 4.459089 GCCCGAGCACCCAGACTC 62.459 72.222 0.00 0.00 39.53 3.36
7093 13372 2.644212 CGAGCACCCAGACTCTGCT 61.644 63.158 0.00 0.00 44.04 4.24
7105 13384 0.604780 ACTCTGCTGTCATGTGCCAC 60.605 55.000 0.00 0.00 0.00 5.01
7106 13385 0.604511 CTCTGCTGTCATGTGCCACA 60.605 55.000 0.00 0.00 0.00 4.17
7107 13386 0.179023 TCTGCTGTCATGTGCCACAA 60.179 50.000 0.00 0.00 0.00 3.33
7118 13397 0.311790 GTGCCACAACTCACACCATG 59.688 55.000 0.00 0.00 33.63 3.66
7121 13400 0.538057 CCACAACTCACACCATGCCT 60.538 55.000 0.00 0.00 0.00 4.75
7298 13578 6.698329 TCTTTCAGATGCAAACACATTTTGAG 59.302 34.615 0.00 0.00 30.57 3.02
7360 13640 0.034767 CACATCACCCATCAGCCAGT 60.035 55.000 0.00 0.00 0.00 4.00
7380 13660 3.641906 AGTACACAGCTAACAGTCTTGGT 59.358 43.478 0.00 0.00 0.00 3.67
7385 13665 1.549170 AGCTAACAGTCTTGGTACCGG 59.451 52.381 7.57 0.00 0.00 5.28
7470 13751 1.470632 GCATCCGAACCAGAGTCTGAG 60.471 57.143 22.09 13.56 32.44 3.35
7472 13753 1.535833 TCCGAACCAGAGTCTGAGAC 58.464 55.000 22.09 3.98 32.44 3.36
7477 13758 3.130164 CGAACCAGAGTCTGAGACATCAT 59.870 47.826 22.09 0.00 34.12 2.45
7511 13793 3.371168 TGCAAATCGAACAAACTCAAGC 58.629 40.909 0.00 0.00 0.00 4.01
7554 13836 7.991084 AATAAACCAGTGTCTAGGGTAAAAC 57.009 36.000 0.00 0.00 33.71 2.43
7555 13837 5.376756 AAACCAGTGTCTAGGGTAAAACA 57.623 39.130 0.00 0.00 33.71 2.83
7556 13838 5.376756 AACCAGTGTCTAGGGTAAAACAA 57.623 39.130 0.00 0.00 33.71 2.83
7557 13839 5.376756 ACCAGTGTCTAGGGTAAAACAAA 57.623 39.130 0.00 0.00 31.89 2.83
7635 13917 8.884124 AAATTTACATTTCCATCTTCCTCTGA 57.116 30.769 0.00 0.00 0.00 3.27
7672 13954 1.608055 CACAGTGCTCCATCCAAACA 58.392 50.000 0.00 0.00 0.00 2.83
7674 13956 2.361757 CACAGTGCTCCATCCAAACAAA 59.638 45.455 0.00 0.00 0.00 2.83
7675 13957 2.362077 ACAGTGCTCCATCCAAACAAAC 59.638 45.455 0.00 0.00 0.00 2.93
7677 13959 3.820467 CAGTGCTCCATCCAAACAAACTA 59.180 43.478 0.00 0.00 0.00 2.24
7680 13962 3.689161 TGCTCCATCCAAACAAACTATCG 59.311 43.478 0.00 0.00 0.00 2.92
7682 13964 4.261801 CTCCATCCAAACAAACTATCGGT 58.738 43.478 0.00 0.00 0.00 4.69
7685 13967 4.142469 CCATCCAAACAAACTATCGGTTCC 60.142 45.833 0.00 0.00 37.12 3.62
7694 13976 7.553881 ACAAACTATCGGTTCCAGATTATTG 57.446 36.000 2.75 0.00 37.12 1.90
7698 13980 5.934625 ACTATCGGTTCCAGATTATTGCATC 59.065 40.000 0.00 0.00 0.00 3.91
7699 13981 4.149511 TCGGTTCCAGATTATTGCATCA 57.850 40.909 0.00 0.00 0.00 3.07
7707 13989 6.566141 TCCAGATTATTGCATCAACACAATG 58.434 36.000 0.00 0.00 37.11 2.82
7716 13998 3.693085 GCATCAACACAATGACCTCAGAT 59.307 43.478 0.00 0.00 30.82 2.90
7720 14002 4.532126 TCAACACAATGACCTCAGATACCT 59.468 41.667 0.00 0.00 0.00 3.08
7736 14022 5.719085 CAGATACCTCTGCCTACATAGGATT 59.281 44.000 9.25 0.00 45.33 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.351874 TGTACTCCCTCCTTCACTTTTG 57.648 45.455 0.00 0.00 0.00 2.44
6 7 5.584551 ATTGTACTCCCTCCTTCACTTTT 57.415 39.130 0.00 0.00 0.00 2.27
8 9 5.342866 ACTATTGTACTCCCTCCTTCACTT 58.657 41.667 0.00 0.00 0.00 3.16
58 492 7.645340 CGGGCTACTCATTTAAATTTGAATCAG 59.355 37.037 5.24 5.24 0.00 2.90
61 495 6.379988 ACCGGGCTACTCATTTAAATTTGAAT 59.620 34.615 6.32 1.19 0.00 2.57
64 498 5.339990 CACCGGGCTACTCATTTAAATTTG 58.660 41.667 6.32 0.00 0.00 2.32
76 510 1.823295 CTACATGCACCGGGCTACT 59.177 57.895 6.32 0.00 45.15 2.57
77 511 1.887707 GCTACATGCACCGGGCTAC 60.888 63.158 6.32 0.00 45.15 3.58
78 512 2.028125 GAGCTACATGCACCGGGCTA 62.028 60.000 6.32 0.00 45.94 3.93
80 514 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
104 538 1.622312 GACCTTTTCCCGGACTACTGT 59.378 52.381 0.73 0.00 0.00 3.55
107 541 0.108472 CGGACCTTTTCCCGGACTAC 60.108 60.000 0.73 0.00 42.27 2.73
108 542 0.251742 TCGGACCTTTTCCCGGACTA 60.252 55.000 0.73 0.00 45.36 2.59
109 543 1.534717 TCGGACCTTTTCCCGGACT 60.535 57.895 0.73 0.00 45.36 3.85
120 555 1.765597 GACCCAAAGTGGTCGGACCT 61.766 60.000 26.41 5.90 44.98 3.85
149 584 6.543465 TCATGTAGAAATGCAGGGAAATACTG 59.457 38.462 0.00 0.00 38.95 2.74
152 587 7.953005 TTTCATGTAGAAATGCAGGGAAATA 57.047 32.000 0.00 0.00 41.17 1.40
153 588 6.855763 TTTCATGTAGAAATGCAGGGAAAT 57.144 33.333 0.00 0.00 41.17 2.17
159 594 7.735215 TGGAAACAGTTTCATGTAGAAATGCAG 60.735 37.037 24.37 0.00 41.41 4.41
169 604 4.580580 GGAGTCTTGGAAACAGTTTCATGT 59.419 41.667 24.37 5.55 44.54 3.21
175 610 1.489230 ACGGGAGTCTTGGAAACAGTT 59.511 47.619 0.00 0.00 40.34 3.16
176 611 1.129058 ACGGGAGTCTTGGAAACAGT 58.871 50.000 0.00 0.00 40.34 3.55
183 618 0.818296 CTAGGTCACGGGAGTCTTGG 59.182 60.000 0.00 0.00 44.67 3.61
186 621 0.323542 CCACTAGGTCACGGGAGTCT 60.324 60.000 0.00 0.00 44.67 3.24
187 622 2.190756 CCACTAGGTCACGGGAGTC 58.809 63.158 0.00 0.00 44.67 3.36
199 634 0.250513 GGAGCCTTGGTGACCACTAG 59.749 60.000 2.46 0.00 30.78 2.57
200 635 0.178903 AGGAGCCTTGGTGACCACTA 60.179 55.000 2.46 0.00 30.78 2.74
203 638 0.768221 AAGAGGAGCCTTGGTGACCA 60.768 55.000 0.00 0.00 0.00 4.02
204 639 0.035915 GAAGAGGAGCCTTGGTGACC 60.036 60.000 0.00 0.00 0.00 4.02
205 640 0.687354 TGAAGAGGAGCCTTGGTGAC 59.313 55.000 0.00 0.00 0.00 3.67
206 641 1.280133 CATGAAGAGGAGCCTTGGTGA 59.720 52.381 0.00 0.00 0.00 4.02
209 644 2.490903 CAAACATGAAGAGGAGCCTTGG 59.509 50.000 0.00 0.00 0.00 3.61
227 684 6.744112 AGCGTGAATAAGAATTTTGTCCAAA 58.256 32.000 0.00 0.00 0.00 3.28
264 722 3.506067 ACGGAAAGAGTAATTGGCAAAGG 59.494 43.478 3.01 0.00 0.00 3.11
277 735 6.423905 TGACAAGTATTTCTGAACGGAAAGAG 59.576 38.462 13.08 2.35 38.38 2.85
279 737 6.539649 TGACAAGTATTTCTGAACGGAAAG 57.460 37.500 13.08 3.78 38.38 2.62
280 738 7.227711 TCAATGACAAGTATTTCTGAACGGAAA 59.772 33.333 10.56 10.56 39.16 3.13
282 740 6.227522 TCAATGACAAGTATTTCTGAACGGA 58.772 36.000 0.00 0.00 0.00 4.69
283 741 6.480524 TCAATGACAAGTATTTCTGAACGG 57.519 37.500 0.00 0.00 0.00 4.44
284 742 8.843733 CATTTCAATGACAAGTATTTCTGAACG 58.156 33.333 0.00 0.00 38.70 3.95
285 743 9.897744 TCATTTCAATGACAAGTATTTCTGAAC 57.102 29.630 0.00 0.00 40.32 3.18
351 809 9.859427 GGAATTACTTGTCATCAAAATGAATGA 57.141 29.630 0.00 0.00 43.42 2.57
352 810 8.800972 CGGAATTACTTGTCATCAAAATGAATG 58.199 33.333 0.00 0.00 43.42 2.67
353 811 7.975616 CCGGAATTACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
354 812 7.175816 TCCGGAATTACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
356 814 6.851609 TCCGGAATTACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
358 816 6.127758 CCATCCGGAATTACTTGTCATCAAAA 60.128 38.462 9.01 0.00 32.87 2.44
359 817 5.356751 CCATCCGGAATTACTTGTCATCAAA 59.643 40.000 9.01 0.00 32.87 2.69
361 819 4.163268 TCCATCCGGAATTACTTGTCATCA 59.837 41.667 9.01 0.00 38.83 3.07
362 820 4.703897 TCCATCCGGAATTACTTGTCATC 58.296 43.478 9.01 0.00 38.83 2.92
364 822 3.118408 CCTCCATCCGGAATTACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
367 825 2.438021 TCCCTCCATCCGGAATTACTTG 59.562 50.000 9.01 0.00 42.21 3.16
369 827 2.330216 CTCCCTCCATCCGGAATTACT 58.670 52.381 9.01 0.00 42.21 2.24
370 828 2.047830 ACTCCCTCCATCCGGAATTAC 58.952 52.381 9.01 0.00 42.21 1.89
373 831 1.220750 ACTACTCCCTCCATCCGGAAT 59.779 52.381 9.01 0.00 42.21 3.01
374 832 0.635009 ACTACTCCCTCCATCCGGAA 59.365 55.000 9.01 0.00 42.21 4.30
375 833 1.526315 TACTACTCCCTCCATCCGGA 58.474 55.000 6.61 6.61 39.79 5.14
377 835 5.296283 CGTATATTACTACTCCCTCCATCCG 59.704 48.000 0.00 0.00 0.00 4.18
378 836 6.421485 TCGTATATTACTACTCCCTCCATCC 58.579 44.000 0.00 0.00 0.00 3.51
380 838 6.662663 GGTTCGTATATTACTACTCCCTCCAT 59.337 42.308 0.00 0.00 0.00 3.41
381 839 6.006449 GGTTCGTATATTACTACTCCCTCCA 58.994 44.000 0.00 0.00 0.00 3.86
383 841 6.072230 GGTGGTTCGTATATTACTACTCCCTC 60.072 46.154 0.00 0.00 0.00 4.30
384 842 5.772169 GGTGGTTCGTATATTACTACTCCCT 59.228 44.000 0.00 0.00 0.00 4.20
385 843 5.772169 AGGTGGTTCGTATATTACTACTCCC 59.228 44.000 0.00 0.00 0.00 4.30
386 844 6.890979 AGGTGGTTCGTATATTACTACTCC 57.109 41.667 0.00 0.00 0.00 3.85
387 845 7.013655 TGGAAGGTGGTTCGTATATTACTACTC 59.986 40.741 0.00 0.00 35.80 2.59
389 847 6.920210 GTGGAAGGTGGTTCGTATATTACTAC 59.080 42.308 0.00 0.00 35.80 2.73
412 971 5.736951 TTCCCCCAATGTTTCTTAATGTG 57.263 39.130 0.00 0.00 0.00 3.21
455 1014 5.483811 TCATTTCTTATCACCGTGCAGTAA 58.516 37.500 0.00 0.00 0.00 2.24
498 1058 3.079578 CAGCCATTGACTAGCCATATGG 58.920 50.000 18.07 18.07 38.98 2.74
507 1067 3.998913 TCATTGACCAGCCATTGACTA 57.001 42.857 0.00 0.00 0.00 2.59
548 1108 1.558233 GGGAAGAAGACCGAAGAGGA 58.442 55.000 0.00 0.00 45.00 3.71
550 1110 1.562783 AGGGGAAGAAGACCGAAGAG 58.437 55.000 0.00 0.00 0.00 2.85
551 1111 1.900486 GAAGGGGAAGAAGACCGAAGA 59.100 52.381 0.00 0.00 0.00 2.87
552 1112 1.903183 AGAAGGGGAAGAAGACCGAAG 59.097 52.381 0.00 0.00 0.00 3.79
553 1113 1.900486 GAGAAGGGGAAGAAGACCGAA 59.100 52.381 0.00 0.00 0.00 4.30
554 1114 1.558233 GAGAAGGGGAAGAAGACCGA 58.442 55.000 0.00 0.00 0.00 4.69
555 1115 0.537653 GGAGAAGGGGAAGAAGACCG 59.462 60.000 0.00 0.00 0.00 4.79
556 1116 0.537653 CGGAGAAGGGGAAGAAGACC 59.462 60.000 0.00 0.00 0.00 3.85
557 1117 1.066787 CACGGAGAAGGGGAAGAAGAC 60.067 57.143 0.00 0.00 0.00 3.01
558 1118 1.267121 CACGGAGAAGGGGAAGAAGA 58.733 55.000 0.00 0.00 0.00 2.87
559 1119 0.977395 ACACGGAGAAGGGGAAGAAG 59.023 55.000 0.00 0.00 0.00 2.85
560 1120 0.974383 GACACGGAGAAGGGGAAGAA 59.026 55.000 0.00 0.00 0.00 2.52
636 1213 3.003763 AGGAGTGGGAAGACCGGC 61.004 66.667 0.00 0.00 44.64 6.13
644 1221 2.764128 GATGGCCGAGGAGTGGGA 60.764 66.667 0.00 0.00 0.00 4.37
648 1225 4.779733 ACGGGATGGCCGAGGAGT 62.780 66.667 0.00 0.00 33.83 3.85
662 1239 1.714899 GATGGATTTGCGGTGGACGG 61.715 60.000 0.00 0.00 44.51 4.79
779 1366 0.041238 TCGAGATTGGTGGGTCTCCT 59.959 55.000 0.00 0.00 38.05 3.69
787 1374 2.401583 TGGTGGATTCGAGATTGGTG 57.598 50.000 0.00 0.00 0.00 4.17
792 1379 2.780010 AGGGAAATGGTGGATTCGAGAT 59.220 45.455 0.00 0.00 0.00 2.75
821 1408 1.682451 CCGCCCGAATCCCTCTGTTA 61.682 60.000 0.00 0.00 0.00 2.41
862 1449 1.737201 GCTTAGAGCTCCCGAGTCC 59.263 63.158 10.93 0.00 38.45 3.85
863 1450 1.038130 TGGCTTAGAGCTCCCGAGTC 61.038 60.000 10.93 8.14 41.99 3.36
864 1451 1.000486 TGGCTTAGAGCTCCCGAGT 60.000 57.895 10.93 0.00 41.99 4.18
865 1452 1.739049 CTGGCTTAGAGCTCCCGAG 59.261 63.158 10.93 7.16 41.99 4.63
866 1453 1.758514 CCTGGCTTAGAGCTCCCGA 60.759 63.158 10.93 0.00 41.99 5.14
867 1454 0.755698 TACCTGGCTTAGAGCTCCCG 60.756 60.000 10.93 0.00 41.99 5.14
868 1455 0.753867 GTACCTGGCTTAGAGCTCCC 59.246 60.000 10.93 4.82 41.99 4.30
922 1509 6.042143 AGAATCGGCATTCGCAAATTAAATT 58.958 32.000 0.00 0.00 43.05 1.82
934 1521 3.058639 GTCATGGCTTAGAATCGGCATTC 60.059 47.826 0.00 2.64 43.48 2.67
945 1534 0.107456 ATGAGCGGGTCATGGCTTAG 59.893 55.000 20.86 0.00 44.82 2.18
955 1544 1.739338 GATCCGTGAGATGAGCGGGT 61.739 60.000 0.00 0.00 44.97 5.28
970 1559 2.107953 GGCTGGCTGTCTCGATCC 59.892 66.667 0.00 0.00 0.00 3.36
1500 2148 2.893398 GAATCCCGTGCCTCGACT 59.107 61.111 0.02 0.00 42.86 4.18
1791 2478 1.623163 TCGTCAGGACATGTACACCA 58.377 50.000 11.55 0.00 0.00 4.17
2010 2709 2.502130 TGGTTGGTAAGCATGTCCGATA 59.498 45.455 0.00 0.00 33.29 2.92
2192 3176 9.912634 CATGTACAAAAATGATCAAAGGTAGTT 57.087 29.630 0.00 0.00 0.00 2.24
2193 3177 9.077885 ACATGTACAAAAATGATCAAAGGTAGT 57.922 29.630 0.00 0.00 0.00 2.73
2194 3178 9.559958 GACATGTACAAAAATGATCAAAGGTAG 57.440 33.333 0.00 0.00 0.00 3.18
2197 3181 9.132521 GAAGACATGTACAAAAATGATCAAAGG 57.867 33.333 0.00 0.00 0.00 3.11
2223 3207 9.254421 CTTCACATTTATTTGCATATATCGACG 57.746 33.333 0.00 0.00 0.00 5.12
2262 3246 5.363562 AGACATGGCAGATGACAATTCTA 57.636 39.130 0.00 0.00 36.16 2.10
2355 3441 5.156608 TCAACTCTGCTCTGATGATCAAA 57.843 39.130 0.00 0.00 0.00 2.69
2363 3449 3.512724 TGATGTGATCAACTCTGCTCTGA 59.487 43.478 0.00 0.00 36.11 3.27
2376 3462 9.414295 TGAAAAGAATTCATTGTTGATGTGATC 57.586 29.630 8.44 0.00 37.06 2.92
2434 3860 5.506730 TGTAGGTGTTCCATTCAATACCA 57.493 39.130 0.00 0.00 39.43 3.25
2465 3899 7.362315 GGTGTGGTTAATATTACAGGACAAACC 60.362 40.741 0.00 0.43 36.51 3.27
2472 3906 6.459573 GCATGTGGTGTGGTTAATATTACAGG 60.460 42.308 0.00 0.00 0.00 4.00
2706 4226 3.667476 TGGCAGGTCCAGGTTTCA 58.333 55.556 0.00 0.00 40.72 2.69
2773 4320 5.130477 TGAAACTGGAGTTCTTAGTGGACTT 59.870 40.000 0.00 0.00 37.25 3.01
2778 4325 6.093495 TGTTTGTGAAACTGGAGTTCTTAGTG 59.907 38.462 0.00 0.00 41.90 2.74
2779 4326 6.177610 TGTTTGTGAAACTGGAGTTCTTAGT 58.822 36.000 0.00 0.00 41.90 2.24
2914 4470 6.094881 CCACGGTGAATATGACCATACTTTTT 59.905 38.462 10.28 0.00 32.45 1.94
3084 4663 1.221414 GAGCTCACTTCACACACCAC 58.779 55.000 9.40 0.00 0.00 4.16
3251 4830 1.133976 CCAGCTATCCCCCAAACAGAG 60.134 57.143 0.00 0.00 0.00 3.35
3298 4877 6.595772 GAAGCATTCTGTCATAGTACAAGG 57.404 41.667 0.00 0.00 43.23 3.61
3461 5043 3.313012 TCAATAACCACGAGACACTGG 57.687 47.619 0.00 0.00 0.00 4.00
3614 5199 7.885399 ACAGCTTCTAGACCTTTGACATTAAAT 59.115 33.333 0.00 0.00 0.00 1.40
3782 5503 1.416401 TGAAGGAGGACGAAGCAAACT 59.584 47.619 0.00 0.00 0.00 2.66
3791 5512 1.248486 TCTGTGAGTGAAGGAGGACG 58.752 55.000 0.00 0.00 0.00 4.79
3827 5854 2.750888 CCTTAAGGCACCGAAGCGC 61.751 63.158 9.00 0.00 34.64 5.92
3828 5855 3.486263 CCTTAAGGCACCGAAGCG 58.514 61.111 9.00 0.00 34.64 4.68
3852 5879 2.424601 CCACATGTCATAGGCACAAAGG 59.575 50.000 0.00 0.00 0.00 3.11
3853 5880 2.424601 CCCACATGTCATAGGCACAAAG 59.575 50.000 0.00 0.00 0.00 2.77
3854 5881 2.445427 CCCACATGTCATAGGCACAAA 58.555 47.619 0.00 0.00 0.00 2.83
3857 5884 1.103398 GGCCCACATGTCATAGGCAC 61.103 60.000 21.10 11.02 45.72 5.01
3858 5885 1.227102 GGCCCACATGTCATAGGCA 59.773 57.895 21.10 0.00 45.72 4.75
3859 5886 1.529244 GGGCCCACATGTCATAGGC 60.529 63.158 19.95 14.49 43.09 3.93
3860 5887 0.258484 TTGGGCCCACATGTCATAGG 59.742 55.000 28.70 0.00 0.00 2.57
3861 5888 1.340893 TGTTGGGCCCACATGTCATAG 60.341 52.381 28.70 0.00 0.00 2.23
3890 5986 3.070576 GGTCCCTGGCATGTTGGC 61.071 66.667 0.00 0.00 44.03 4.52
3891 5987 2.362889 GGGTCCCTGGCATGTTGG 60.363 66.667 0.00 0.00 0.00 3.77
3892 5988 0.831288 TTTGGGTCCCTGGCATGTTG 60.831 55.000 10.00 0.00 0.00 3.33
3893 5989 0.542702 CTTTGGGTCCCTGGCATGTT 60.543 55.000 10.00 0.00 0.00 2.71
3894 5990 1.077265 CTTTGGGTCCCTGGCATGT 59.923 57.895 10.00 0.00 0.00 3.21
3895 5991 1.683365 CCTTTGGGTCCCTGGCATG 60.683 63.158 10.00 0.00 0.00 4.06
3898 5994 4.299796 TGCCTTTGGGTCCCTGGC 62.300 66.667 24.22 24.22 43.49 4.85
3899 5995 2.036256 CTGCCTTTGGGTCCCTGG 59.964 66.667 10.00 9.90 34.45 4.45
3900 5996 2.036256 CCTGCCTTTGGGTCCCTG 59.964 66.667 10.00 0.00 34.45 4.45
3901 5997 2.452491 ACCTGCCTTTGGGTCCCT 60.452 61.111 10.00 0.00 34.45 4.20
3902 5998 2.283173 CACCTGCCTTTGGGTCCC 60.283 66.667 0.00 0.00 32.95 4.46
3903 5999 2.991540 GCACCTGCCTTTGGGTCC 60.992 66.667 0.00 0.00 32.95 4.46
3921 6017 0.166814 GCAGCTTCAGTGCCGTAAAG 59.833 55.000 0.00 0.00 34.67 1.85
3922 6018 2.244000 GCAGCTTCAGTGCCGTAAA 58.756 52.632 0.00 0.00 34.67 2.01
3928 6024 2.749441 GGGAGGCAGCTTCAGTGC 60.749 66.667 6.88 0.00 40.42 4.40
3929 6025 0.538057 TTTGGGAGGCAGCTTCAGTG 60.538 55.000 6.88 0.00 0.00 3.66
3931 6027 0.600057 GTTTTGGGAGGCAGCTTCAG 59.400 55.000 6.88 0.00 0.00 3.02
3932 6028 0.185901 AGTTTTGGGAGGCAGCTTCA 59.814 50.000 6.88 0.00 0.00 3.02
3933 6029 2.200373 TAGTTTTGGGAGGCAGCTTC 57.800 50.000 0.00 0.00 0.00 3.86
3935 6031 5.073691 ACATATATAGTTTTGGGAGGCAGCT 59.926 40.000 0.00 0.00 0.00 4.24
3936 6032 5.316987 ACATATATAGTTTTGGGAGGCAGC 58.683 41.667 0.00 0.00 0.00 5.25
3937 6033 7.119846 GCTAACATATATAGTTTTGGGAGGCAG 59.880 40.741 6.05 0.00 0.00 4.85
3938 6034 6.940298 GCTAACATATATAGTTTTGGGAGGCA 59.060 38.462 6.05 0.00 0.00 4.75
3939 6035 6.374613 GGCTAACATATATAGTTTTGGGAGGC 59.625 42.308 6.05 6.03 0.00 4.70
3940 6036 7.690256 AGGCTAACATATATAGTTTTGGGAGG 58.310 38.462 6.05 0.00 0.00 4.30
3943 6039 9.959721 ACATAGGCTAACATATATAGTTTTGGG 57.040 33.333 0.00 0.00 0.00 4.12
3984 6369 7.367285 TGCACTCATTTAATAACTGTTGGTTC 58.633 34.615 2.69 0.00 39.17 3.62
4082 6469 5.886960 ATCAAAGTTGAACATCAGCTACC 57.113 39.130 0.00 0.00 36.93 3.18
4111 6498 1.693606 TCTGCAAGTGACATGAGGACA 59.306 47.619 0.00 0.00 33.76 4.02
4172 6559 0.250513 GAGCCTCCAGGATGTCGTTT 59.749 55.000 0.00 0.00 37.39 3.60
4289 7699 6.460781 ACGGTTCACAGAACATCATACTTTA 58.539 36.000 11.51 0.00 0.00 1.85
4446 8028 8.598075 CCAAAGCTTCTTAAATATGATTTGCAC 58.402 33.333 0.00 0.00 0.00 4.57
4532 8114 6.877855 TGTACATGTTAGAGACTACGTCTTCT 59.122 38.462 2.30 0.00 43.53 2.85
4614 8260 7.751732 TGATACACGAAATCAATCAGGAAAAG 58.248 34.615 0.00 0.00 30.52 2.27
4622 8268 9.855361 CAAACTATCTGATACACGAAATCAATC 57.145 33.333 0.00 0.00 33.13 2.67
4704 8465 3.075432 ACAGCCACCCCTAGTTAAACAAT 59.925 43.478 0.00 0.00 0.00 2.71
4723 8488 3.923017 AAATTCGCCTTGGAGAAACAG 57.077 42.857 9.69 0.00 0.00 3.16
4771 8565 6.513806 TGAAACTATCCATCCACACATTTG 57.486 37.500 0.00 0.00 0.00 2.32
4850 9125 8.887717 AGAATGTAGTGAGCAATCTACAATTTC 58.112 33.333 15.10 14.45 45.84 2.17
4853 9128 8.879342 GTAGAATGTAGTGAGCAATCTACAAT 57.121 34.615 15.10 9.52 45.84 2.71
5315 11507 5.748152 GCAGATTCTTCATCACTGTCTCTAC 59.252 44.000 0.00 0.00 33.75 2.59
5665 11869 2.680339 GCAGCCTCATACTTTTGGAGAC 59.320 50.000 0.00 0.00 0.00 3.36
5896 12103 6.146216 CGTGGATATACTGAAGCTTCTGTAG 58.854 44.000 34.73 24.16 42.32 2.74
5907 12114 1.110518 TGCCGGCGTGGATATACTGA 61.111 55.000 23.90 0.00 42.00 3.41
6146 12365 3.268023 AGTCCTTGCTGTTATGCCTAC 57.732 47.619 0.00 0.00 0.00 3.18
6802 13042 0.101399 ATCAGAGCTCGTGGTAAGCG 59.899 55.000 8.37 0.00 44.59 4.68
6810 13050 1.999071 GCGACTGGATCAGAGCTCGT 61.999 60.000 8.37 0.00 36.45 4.18
6811 13051 1.299014 GCGACTGGATCAGAGCTCG 60.299 63.158 8.37 3.55 36.45 5.03
6824 13064 0.322975 AAGGACTGATTGCAGCGACT 59.677 50.000 0.00 0.00 46.26 4.18
6915 13194 6.590292 CGTAGTACATTTCTCAAGGAACACAT 59.410 38.462 0.38 0.00 33.13 3.21
6937 13216 7.356089 AGTACCCATATGAGAATTGAACGTA 57.644 36.000 3.65 0.00 0.00 3.57
6973 13252 2.356432 CCATGCCTCACCTTGAAGATGA 60.356 50.000 0.00 0.00 0.00 2.92
6988 13267 0.029834 GCATTCACATCGACCATGCC 59.970 55.000 0.00 0.00 33.47 4.40
6990 13269 2.282407 TCAGCATTCACATCGACCATG 58.718 47.619 0.00 0.00 38.64 3.66
6991 13270 2.696989 TCAGCATTCACATCGACCAT 57.303 45.000 0.00 0.00 0.00 3.55
7006 13285 1.648467 GGCTCGTTCCCAACATCAGC 61.648 60.000 0.00 0.00 0.00 4.26
7014 13293 1.122632 TGGTAACAGGCTCGTTCCCA 61.123 55.000 9.07 9.07 46.17 4.37
7036 13315 6.204852 TCCCCAGCAAGATGATGTTATATT 57.795 37.500 0.00 0.00 30.62 1.28
7089 13368 0.039798 GTTGTGGCACATGACAGCAG 60.040 55.000 22.73 0.00 44.52 4.24
7093 13372 1.308047 GTGAGTTGTGGCACATGACA 58.692 50.000 22.73 17.39 44.52 3.58
7105 13384 0.518636 CGAAGGCATGGTGTGAGTTG 59.481 55.000 0.00 0.00 0.00 3.16
7106 13385 1.237285 GCGAAGGCATGGTGTGAGTT 61.237 55.000 0.00 0.00 39.62 3.01
7107 13386 1.672356 GCGAAGGCATGGTGTGAGT 60.672 57.895 0.00 0.00 39.62 3.41
7360 13640 4.021719 GGTACCAAGACTGTTAGCTGTGTA 60.022 45.833 7.15 0.00 0.00 2.90
7380 13660 0.402504 AAGTTCCATTGTGCCCGGTA 59.597 50.000 0.00 0.00 0.00 4.02
7385 13665 0.037975 CCAGCAAGTTCCATTGTGCC 60.038 55.000 0.00 0.00 37.73 5.01
7418 13698 8.600449 TGATAAATGTTTTTGGACAATGGTTC 57.400 30.769 0.00 0.00 32.47 3.62
7456 13737 4.734398 ATGATGTCTCAGACTCTGGTTC 57.266 45.455 6.33 0.00 34.12 3.62
7463 13744 3.571590 GGACCCTATGATGTCTCAGACT 58.428 50.000 6.33 0.00 34.12 3.24
7511 13793 8.866956 GGTTTATTTGAAATTCTGCATCTCAAG 58.133 33.333 0.00 0.00 0.00 3.02
7516 13798 7.599998 ACACTGGTTTATTTGAAATTCTGCATC 59.400 33.333 0.00 0.00 0.00 3.91
7523 13805 7.728532 ACCCTAGACACTGGTTTATTTGAAATT 59.271 33.333 0.00 0.00 0.00 1.82
7556 13838 7.556275 GGAATTTTTCCTGGAAAGTTCCTTTTT 59.444 33.333 33.71 18.62 46.57 1.94
7557 13839 7.054124 GGAATTTTTCCTGGAAAGTTCCTTTT 58.946 34.615 33.71 19.30 46.57 2.27
7578 13860 2.302733 GCACCATTTGGAACCAAGGAAT 59.697 45.455 15.59 2.14 37.24 3.01
7584 13866 4.963318 TTTAATGCACCATTTGGAACCA 57.037 36.364 3.01 0.00 35.54 3.67
7635 13917 6.380995 CACTGTGCAATACATACATTTGTGT 58.619 36.000 0.00 0.00 38.92 3.72
7672 13954 6.119536 TGCAATAATCTGGAACCGATAGTTT 58.880 36.000 0.00 0.00 39.40 2.66
7674 13956 5.290493 TGCAATAATCTGGAACCGATAGT 57.710 39.130 0.00 0.00 0.00 2.12
7675 13957 5.934043 TGATGCAATAATCTGGAACCGATAG 59.066 40.000 0.00 0.00 0.00 2.08
7677 13959 4.717877 TGATGCAATAATCTGGAACCGAT 58.282 39.130 0.00 0.00 0.00 4.18
7680 13962 5.105797 TGTGTTGATGCAATAATCTGGAACC 60.106 40.000 0.00 0.00 0.00 3.62
7682 13964 6.587206 TTGTGTTGATGCAATAATCTGGAA 57.413 33.333 0.00 0.00 0.00 3.53
7685 13967 6.474427 GGTCATTGTGTTGATGCAATAATCTG 59.526 38.462 0.00 0.00 34.01 2.90
7694 13976 3.076621 TCTGAGGTCATTGTGTTGATGC 58.923 45.455 0.00 0.00 0.00 3.91
7698 13980 4.836825 AGGTATCTGAGGTCATTGTGTTG 58.163 43.478 0.00 0.00 0.00 3.33
7699 13981 4.780021 AGAGGTATCTGAGGTCATTGTGTT 59.220 41.667 0.00 0.00 33.30 3.32
7720 14002 5.674525 CTTTGTGAATCCTATGTAGGCAGA 58.325 41.667 1.02 0.00 43.31 4.26
7723 14005 3.565902 GGCTTTGTGAATCCTATGTAGGC 59.434 47.826 1.02 0.00 43.31 3.93
7736 14022 1.811558 GCTCTGTGTCTGGCTTTGTGA 60.812 52.381 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.