Multiple sequence alignment - TraesCS7B01G363200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G363200 chr7B 100.000 6715 0 0 1 6715 625722066 625715352 0.000000e+00 12401.0
1 TraesCS7B01G363200 chr7B 99.379 161 1 0 1649 1809 625720265 625720105 6.590000e-75 292.0
2 TraesCS7B01G363200 chr7B 99.379 161 1 0 1802 1962 625720418 625720258 6.590000e-75 292.0
3 TraesCS7B01G363200 chr7B 94.737 152 8 0 6564 6715 728814440 728814591 3.130000e-58 237.0
4 TraesCS7B01G363200 chr7A 93.639 4433 176 50 1978 6361 657905906 657901531 0.000000e+00 6527.0
5 TraesCS7B01G363200 chr7A 93.383 1073 48 11 749 1810 657907062 657906002 0.000000e+00 1567.0
6 TraesCS7B01G363200 chr7A 91.860 172 11 3 1805 1976 657906158 657905990 3.130000e-58 237.0
7 TraesCS7B01G363200 chr7A 95.556 45 1 1 2029 2073 164158796 164158753 3.360000e-08 71.3
8 TraesCS7B01G363200 chr7A 95.455 44 1 1 2029 2072 408604056 408604014 1.210000e-07 69.4
9 TraesCS7B01G363200 chr7D 92.927 4510 172 49 1805 6262 569051601 569047187 0.000000e+00 6425.0
10 TraesCS7B01G363200 chr7D 93.239 1065 57 13 749 1810 569052497 569051445 0.000000e+00 1554.0
11 TraesCS7B01G363200 chr7D 85.185 216 17 4 6349 6560 569047148 569046944 2.450000e-49 207.0
12 TraesCS7B01G363200 chr1B 98.233 679 8 2 1 675 222197785 222198463 0.000000e+00 1184.0
13 TraesCS7B01G363200 chr1B 90.842 677 28 9 3 646 84420730 84421405 0.000000e+00 876.0
14 TraesCS7B01G363200 chr1B 96.053 152 6 0 6564 6715 566388508 566388357 1.450000e-61 248.0
15 TraesCS7B01G363200 chr1B 95.395 152 7 0 6564 6715 25888653 25888502 6.730000e-60 243.0
16 TraesCS7B01G363200 chr1B 94.737 152 8 0 6564 6715 57625428 57625277 3.130000e-58 237.0
17 TraesCS7B01G363200 chr1B 95.455 44 1 1 2029 2072 468212587 468212629 1.210000e-07 69.4
18 TraesCS7B01G363200 chr1B 95.455 44 1 1 2029 2072 521341240 521341282 1.210000e-07 69.4
19 TraesCS7B01G363200 chr6B 98.077 676 12 1 1 675 240549332 240550007 0.000000e+00 1175.0
20 TraesCS7B01G363200 chr6B 92.035 678 45 8 1 672 232753080 232752406 0.000000e+00 944.0
21 TraesCS7B01G363200 chr6B 91.168 702 33 3 3 675 664719270 664719971 0.000000e+00 926.0
22 TraesCS7B01G363200 chr6B 96.842 95 3 0 1 95 107849118 107849024 6.970000e-35 159.0
23 TraesCS7B01G363200 chr6B 95.455 44 1 1 2029 2072 142541200 142541158 1.210000e-07 69.4
24 TraesCS7B01G363200 chr5A 91.207 762 31 5 1 726 510990220 510990981 0.000000e+00 1003.0
25 TraesCS7B01G363200 chrUn 91.342 693 26 5 3 661 411192950 411192258 0.000000e+00 917.0
26 TraesCS7B01G363200 chr2B 90.870 701 35 3 1 672 780826957 780827657 0.000000e+00 913.0
27 TraesCS7B01G363200 chr2B 94.479 163 8 1 6553 6715 45558074 45558235 4.020000e-62 250.0
28 TraesCS7B01G363200 chr2B 95.973 149 5 1 6564 6711 118821328 118821476 2.420000e-59 241.0
29 TraesCS7B01G363200 chr2B 92.727 165 11 1 6548 6711 768556383 768556547 3.130000e-58 237.0
30 TraesCS7B01G363200 chr3A 92.478 452 30 3 228 675 505064726 505065177 1.580000e-180 643.0
31 TraesCS7B01G363200 chr5B 94.872 156 8 0 6560 6715 593655472 593655317 1.870000e-60 244.0
32 TraesCS7B01G363200 chr5B 94.268 157 9 0 6559 6715 527498076 527498232 2.420000e-59 241.0
33 TraesCS7B01G363200 chr1A 79.856 278 44 6 1411 1686 291893567 291893300 6.870000e-45 193.0
34 TraesCS7B01G363200 chr5D 79.853 273 43 6 1411 1681 53761739 53761477 8.890000e-44 189.0
35 TraesCS7B01G363200 chr5D 95.455 44 1 1 2029 2072 229932878 229932920 1.210000e-07 69.4
36 TraesCS7B01G363200 chr3B 78.417 278 48 6 1411 1686 341340289 341340556 3.220000e-38 171.0
37 TraesCS7B01G363200 chr3D 95.455 44 1 1 2029 2072 213294625 213294667 1.210000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G363200 chr7B 625715352 625722066 6714 True 4328.333333 12401 99.586000 1 6715 3 chr7B.!!$R1 6714
1 TraesCS7B01G363200 chr7A 657901531 657907062 5531 True 2777.000000 6527 92.960667 749 6361 3 chr7A.!!$R3 5612
2 TraesCS7B01G363200 chr7D 569046944 569052497 5553 True 2728.666667 6425 90.450333 749 6560 3 chr7D.!!$R1 5811
3 TraesCS7B01G363200 chr1B 222197785 222198463 678 False 1184.000000 1184 98.233000 1 675 1 chr1B.!!$F2 674
4 TraesCS7B01G363200 chr1B 84420730 84421405 675 False 876.000000 876 90.842000 3 646 1 chr1B.!!$F1 643
5 TraesCS7B01G363200 chr6B 240549332 240550007 675 False 1175.000000 1175 98.077000 1 675 1 chr6B.!!$F1 674
6 TraesCS7B01G363200 chr6B 232752406 232753080 674 True 944.000000 944 92.035000 1 672 1 chr6B.!!$R3 671
7 TraesCS7B01G363200 chr6B 664719270 664719971 701 False 926.000000 926 91.168000 3 675 1 chr6B.!!$F2 672
8 TraesCS7B01G363200 chr5A 510990220 510990981 761 False 1003.000000 1003 91.207000 1 726 1 chr5A.!!$F1 725
9 TraesCS7B01G363200 chrUn 411192258 411192950 692 True 917.000000 917 91.342000 3 661 1 chrUn.!!$R1 658
10 TraesCS7B01G363200 chr2B 780826957 780827657 700 False 913.000000 913 90.870000 1 672 1 chr2B.!!$F4 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 954 0.319555 CGGACGGCTCAGAAGAAACA 60.320 55.0 0.00 0.00 0.00 2.83 F
2105 2243 0.173255 AATTGCCGGTACAAGCATGC 59.827 50.0 10.51 10.51 37.12 4.06 F
2106 2244 0.680921 ATTGCCGGTACAAGCATGCT 60.681 50.0 16.30 16.30 37.12 3.79 F
3980 4134 0.752054 CACCCTGTGCCAAATGTGTT 59.248 50.0 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2293 0.035152 TTGGAAGACCGCATCTGCAT 60.035 50.0 2.72 0.00 42.21 3.96 R
3980 4134 1.422531 ATCAAACAGCCCAGGCAAAA 58.577 45.0 12.03 0.00 44.88 2.44 R
4028 4182 2.414481 CGACTGATCTGCAAAAGTCAGG 59.586 50.0 16.69 2.25 39.19 3.86 R
5786 5975 0.440371 CGAGCTCGCTTTTCAGTTCC 59.560 55.0 25.07 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 259 4.514577 CGCGCCCATCCTCGACTT 62.515 66.667 0.00 0.00 0.00 3.01
640 684 5.337578 ACTTTTCTGCAAAAAGCCTAACA 57.662 34.783 22.78 0.00 44.83 2.41
779 824 0.880441 TCGACCGACATTTGGTACGA 59.120 50.000 0.00 0.00 40.63 3.43
782 827 2.406130 GACCGACATTTGGTACGAACA 58.594 47.619 0.00 0.00 40.63 3.18
784 829 2.739913 ACCGACATTTGGTACGAACATG 59.260 45.455 0.00 0.00 38.15 3.21
792 837 7.526608 ACATTTGGTACGAACATGATACTTTG 58.473 34.615 0.00 0.00 0.00 2.77
793 838 7.389330 ACATTTGGTACGAACATGATACTTTGA 59.611 33.333 0.00 0.00 0.00 2.69
794 839 7.731882 TTTGGTACGAACATGATACTTTGAA 57.268 32.000 0.00 0.00 0.00 2.69
795 840 7.731882 TTGGTACGAACATGATACTTTGAAA 57.268 32.000 0.00 0.00 0.00 2.69
796 841 7.731882 TGGTACGAACATGATACTTTGAAAA 57.268 32.000 0.00 0.00 0.00 2.29
797 842 7.802738 TGGTACGAACATGATACTTTGAAAAG 58.197 34.615 0.00 1.22 41.73 2.27
820 865 0.820074 AAAACATCCGACCAACGCCA 60.820 50.000 0.00 0.00 41.07 5.69
821 866 1.234615 AAACATCCGACCAACGCCAG 61.235 55.000 0.00 0.00 41.07 4.85
837 883 2.414824 CGCCAGCACGCCTTAAAAATAA 60.415 45.455 0.00 0.00 0.00 1.40
840 886 3.119495 CCAGCACGCCTTAAAAATAAGCT 60.119 43.478 0.00 0.00 0.00 3.74
890 944 2.795175 TATGAAAGATCGGACGGCTC 57.205 50.000 0.00 0.00 0.00 4.70
900 954 0.319555 CGGACGGCTCAGAAGAAACA 60.320 55.000 0.00 0.00 0.00 2.83
961 1015 5.902681 CTCTAGTCGAAAGAGAGAGAGAGA 58.097 45.833 17.27 0.00 46.74 3.10
1215 1269 2.334946 GCTGTGCATGAAGGGCGAA 61.335 57.895 0.00 0.00 0.00 4.70
1365 1419 0.617935 TGTGAGATCCCCAATTCGCA 59.382 50.000 0.00 0.00 0.00 5.10
1392 1447 4.227197 TCCCCCAAAGCTATTTGTTTTCA 58.773 39.130 0.00 0.00 43.61 2.69
1551 1607 4.615588 TTTCATTGGTTGATTGGGGAAC 57.384 40.909 0.00 0.00 33.34 3.62
1581 1637 4.508461 TGAGATTGCTGTGACCAAAATG 57.492 40.909 0.00 0.00 0.00 2.32
1590 1646 3.163467 TGTGACCAAAATGCATGGATCA 58.837 40.909 11.80 8.48 40.56 2.92
1622 1678 9.559958 CAATTGTTATCCTGTAGTTCAATTCAC 57.440 33.333 0.00 0.00 33.66 3.18
1640 1696 8.677300 TCAATTCACTATGAGGAAATTTAGTGC 58.323 33.333 10.40 0.00 40.72 4.40
1673 1729 5.637810 CAGTTTTGATTGCTGCTGATTGAAT 59.362 36.000 0.00 0.00 0.00 2.57
1722 1778 3.684103 TTGTACAAGAAGTTGGTTGCG 57.316 42.857 3.59 0.00 38.07 4.85
1771 1827 1.600957 GACCATGGTCGATGCAAGATG 59.399 52.381 28.52 0.00 35.30 2.90
1772 1828 0.309922 CCATGGTCGATGCAAGATGC 59.690 55.000 2.57 0.00 45.29 3.91
1773 1829 1.306148 CATGGTCGATGCAAGATGCT 58.694 50.000 3.78 0.00 45.31 3.79
1774 1830 2.486918 CATGGTCGATGCAAGATGCTA 58.513 47.619 3.78 0.00 45.31 3.49
1775 1831 2.689553 TGGTCGATGCAAGATGCTAA 57.310 45.000 3.78 0.00 45.31 3.09
1776 1832 3.198409 TGGTCGATGCAAGATGCTAAT 57.802 42.857 3.78 0.00 45.31 1.73
1777 1833 3.544684 TGGTCGATGCAAGATGCTAATT 58.455 40.909 3.78 0.00 45.31 1.40
1778 1834 3.561310 TGGTCGATGCAAGATGCTAATTC 59.439 43.478 3.78 0.00 45.31 2.17
1779 1835 3.561310 GGTCGATGCAAGATGCTAATTCA 59.439 43.478 3.78 0.00 45.31 2.57
1780 1836 4.035558 GGTCGATGCAAGATGCTAATTCAA 59.964 41.667 3.78 0.00 45.31 2.69
1781 1837 5.203370 GTCGATGCAAGATGCTAATTCAAG 58.797 41.667 3.78 0.00 45.31 3.02
1782 1838 4.877823 TCGATGCAAGATGCTAATTCAAGT 59.122 37.500 3.78 0.00 45.31 3.16
1783 1839 4.968181 CGATGCAAGATGCTAATTCAAGTG 59.032 41.667 3.78 0.00 45.31 3.16
1784 1840 5.448225 CGATGCAAGATGCTAATTCAAGTGT 60.448 40.000 3.78 0.00 45.31 3.55
1785 1841 6.238184 CGATGCAAGATGCTAATTCAAGTGTA 60.238 38.462 3.78 0.00 45.31 2.90
1786 1842 6.182039 TGCAAGATGCTAATTCAAGTGTAC 57.818 37.500 3.78 0.00 45.31 2.90
1787 1843 5.123820 TGCAAGATGCTAATTCAAGTGTACC 59.876 40.000 3.78 0.00 45.31 3.34
1788 1844 5.727791 GCAAGATGCTAATTCAAGTGTACCG 60.728 44.000 0.00 0.00 40.96 4.02
1789 1845 5.086104 AGATGCTAATTCAAGTGTACCGT 57.914 39.130 0.00 0.00 0.00 4.83
1790 1846 4.870426 AGATGCTAATTCAAGTGTACCGTG 59.130 41.667 0.00 0.00 0.00 4.94
1791 1847 4.260139 TGCTAATTCAAGTGTACCGTGA 57.740 40.909 0.00 0.00 0.00 4.35
1792 1848 3.991773 TGCTAATTCAAGTGTACCGTGAC 59.008 43.478 0.00 0.00 30.93 3.67
1793 1849 3.991773 GCTAATTCAAGTGTACCGTGACA 59.008 43.478 0.00 0.00 30.93 3.58
1802 1858 2.921754 GTGTACCGTGACACTAATGAGC 59.078 50.000 3.68 0.00 45.21 4.26
1803 1859 2.559231 TGTACCGTGACACTAATGAGCA 59.441 45.455 3.68 0.00 0.00 4.26
1804 1860 2.370281 ACCGTGACACTAATGAGCAG 57.630 50.000 3.68 0.00 0.00 4.24
1805 1861 1.618837 ACCGTGACACTAATGAGCAGT 59.381 47.619 3.68 0.00 0.00 4.40
1806 1862 2.037251 ACCGTGACACTAATGAGCAGTT 59.963 45.455 3.68 0.00 0.00 3.16
1807 1863 3.067106 CCGTGACACTAATGAGCAGTTT 58.933 45.455 3.68 0.00 0.00 2.66
1808 1864 3.498397 CCGTGACACTAATGAGCAGTTTT 59.502 43.478 3.68 0.00 0.00 2.43
1809 1865 4.457810 CGTGACACTAATGAGCAGTTTTG 58.542 43.478 3.68 0.00 0.00 2.44
1810 1866 4.211164 CGTGACACTAATGAGCAGTTTTGA 59.789 41.667 3.68 0.00 0.00 2.69
1811 1867 5.106948 CGTGACACTAATGAGCAGTTTTGAT 60.107 40.000 3.68 0.00 0.00 2.57
1812 1868 6.566564 CGTGACACTAATGAGCAGTTTTGATT 60.567 38.462 3.68 0.00 0.00 2.57
1813 1869 6.580041 GTGACACTAATGAGCAGTTTTGATTG 59.420 38.462 0.00 0.00 0.00 2.67
1814 1870 5.464168 ACACTAATGAGCAGTTTTGATTGC 58.536 37.500 0.00 0.00 40.57 3.56
1823 1879 4.903638 CAGTTTTGATTGCTGCTGATTG 57.096 40.909 0.00 0.00 0.00 2.67
1824 1880 4.552355 CAGTTTTGATTGCTGCTGATTGA 58.448 39.130 0.00 0.00 0.00 2.57
1825 1881 4.986034 CAGTTTTGATTGCTGCTGATTGAA 59.014 37.500 0.00 0.00 0.00 2.69
1826 1882 5.637810 CAGTTTTGATTGCTGCTGATTGAAT 59.362 36.000 0.00 0.00 0.00 2.57
1827 1883 5.867716 AGTTTTGATTGCTGCTGATTGAATC 59.132 36.000 0.00 0.00 0.00 2.52
1828 1884 5.654603 TTTGATTGCTGCTGATTGAATCT 57.345 34.783 6.73 0.00 0.00 2.40
1829 1885 6.762702 TTTGATTGCTGCTGATTGAATCTA 57.237 33.333 6.73 0.00 0.00 1.98
1830 1886 5.746307 TGATTGCTGCTGATTGAATCTAC 57.254 39.130 6.73 0.00 0.00 2.59
1831 1887 5.434408 TGATTGCTGCTGATTGAATCTACT 58.566 37.500 6.73 0.00 0.00 2.57
1832 1888 5.296035 TGATTGCTGCTGATTGAATCTACTG 59.704 40.000 6.73 4.10 0.00 2.74
1833 1889 4.476628 TGCTGCTGATTGAATCTACTGA 57.523 40.909 6.73 0.00 0.00 3.41
1834 1890 4.186926 TGCTGCTGATTGAATCTACTGAC 58.813 43.478 6.73 1.37 0.00 3.51
1835 1891 4.186926 GCTGCTGATTGAATCTACTGACA 58.813 43.478 6.73 0.00 0.00 3.58
1836 1892 4.633126 GCTGCTGATTGAATCTACTGACAA 59.367 41.667 6.73 0.00 0.00 3.18
1837 1893 5.447010 GCTGCTGATTGAATCTACTGACAAC 60.447 44.000 6.73 0.00 0.00 3.32
1838 1894 5.550290 TGCTGATTGAATCTACTGACAACA 58.450 37.500 6.73 0.00 0.00 3.33
1839 1895 6.175471 TGCTGATTGAATCTACTGACAACAT 58.825 36.000 6.73 0.00 0.00 2.71
1840 1896 7.330262 TGCTGATTGAATCTACTGACAACATA 58.670 34.615 6.73 0.00 0.00 2.29
1841 1897 7.989170 TGCTGATTGAATCTACTGACAACATAT 59.011 33.333 6.73 0.00 0.00 1.78
1842 1898 9.481340 GCTGATTGAATCTACTGACAACATATA 57.519 33.333 6.73 0.00 0.00 0.86
1855 1911 9.764363 ACTGACAACATATATATCGAAACACAT 57.236 29.630 0.00 0.00 0.00 3.21
1867 1923 6.861065 ATCGAAACACATTGTACAAGAAGT 57.139 33.333 14.65 9.54 0.00 3.01
1868 1924 6.671614 TCGAAACACATTGTACAAGAAGTT 57.328 33.333 14.65 13.91 0.00 2.66
1869 1925 6.482835 TCGAAACACATTGTACAAGAAGTTG 58.517 36.000 14.65 9.31 39.82 3.16
1870 1926 5.681105 CGAAACACATTGTACAAGAAGTTGG 59.319 40.000 14.65 9.54 38.07 3.77
1871 1927 6.524101 AAACACATTGTACAAGAAGTTGGT 57.476 33.333 14.65 5.39 38.07 3.67
1872 1928 6.524101 AACACATTGTACAAGAAGTTGGTT 57.476 33.333 14.65 10.29 38.07 3.67
1873 1929 5.890334 ACACATTGTACAAGAAGTTGGTTG 58.110 37.500 14.65 6.49 38.07 3.77
1874 1930 4.739716 CACATTGTACAAGAAGTTGGTTGC 59.260 41.667 14.65 0.00 38.07 4.17
1875 1931 3.684103 TTGTACAAGAAGTTGGTTGCG 57.316 42.857 3.59 0.00 38.07 4.85
1876 1932 2.907634 TGTACAAGAAGTTGGTTGCGA 58.092 42.857 0.00 0.00 38.07 5.10
1877 1933 2.610374 TGTACAAGAAGTTGGTTGCGAC 59.390 45.455 0.00 0.00 38.07 5.19
1878 1934 1.745232 ACAAGAAGTTGGTTGCGACA 58.255 45.000 6.39 0.00 38.07 4.35
1879 1935 1.670811 ACAAGAAGTTGGTTGCGACAG 59.329 47.619 6.39 0.00 38.07 3.51
1880 1936 1.939934 CAAGAAGTTGGTTGCGACAGA 59.060 47.619 6.39 0.00 0.00 3.41
1881 1937 1.871080 AGAAGTTGGTTGCGACAGAG 58.129 50.000 6.39 0.00 0.00 3.35
1882 1938 1.412710 AGAAGTTGGTTGCGACAGAGA 59.587 47.619 6.39 0.00 0.00 3.10
1883 1939 2.158957 AGAAGTTGGTTGCGACAGAGAA 60.159 45.455 6.39 0.00 0.00 2.87
1884 1940 2.550830 AGTTGGTTGCGACAGAGAAT 57.449 45.000 6.39 0.00 0.00 2.40
1885 1941 2.146342 AGTTGGTTGCGACAGAGAATG 58.854 47.619 6.39 0.00 0.00 2.67
1886 1942 2.143122 GTTGGTTGCGACAGAGAATGA 58.857 47.619 6.39 0.00 0.00 2.57
1887 1943 1.795768 TGGTTGCGACAGAGAATGAC 58.204 50.000 6.39 0.00 0.00 3.06
1888 1944 1.079503 GGTTGCGACAGAGAATGACC 58.920 55.000 6.39 0.00 0.00 4.02
1889 1945 1.608025 GGTTGCGACAGAGAATGACCA 60.608 52.381 6.39 0.00 0.00 4.02
1890 1946 2.350522 GTTGCGACAGAGAATGACCAT 58.649 47.619 0.00 0.00 0.00 3.55
1891 1947 3.521560 GTTGCGACAGAGAATGACCATA 58.478 45.455 0.00 0.00 0.00 2.74
1892 1948 3.443099 TGCGACAGAGAATGACCATAG 57.557 47.619 0.00 0.00 0.00 2.23
1893 1949 2.760650 TGCGACAGAGAATGACCATAGT 59.239 45.455 0.00 0.00 0.00 2.12
1894 1950 3.951680 TGCGACAGAGAATGACCATAGTA 59.048 43.478 0.00 0.00 0.00 1.82
1895 1951 4.584743 TGCGACAGAGAATGACCATAGTAT 59.415 41.667 0.00 0.00 0.00 2.12
1896 1952 4.920340 GCGACAGAGAATGACCATAGTATG 59.080 45.833 2.90 2.90 0.00 2.39
1897 1953 5.278512 GCGACAGAGAATGACCATAGTATGA 60.279 44.000 11.91 0.00 0.00 2.15
1898 1954 6.146216 CGACAGAGAATGACCATAGTATGAC 58.854 44.000 11.91 6.11 0.00 3.06
1899 1955 6.016693 CGACAGAGAATGACCATAGTATGACT 60.017 42.308 11.91 0.00 0.00 3.41
1900 1956 7.469318 CGACAGAGAATGACCATAGTATGACTT 60.469 40.741 11.91 1.69 0.00 3.01
1901 1957 7.495901 ACAGAGAATGACCATAGTATGACTTG 58.504 38.462 11.91 0.00 0.00 3.16
1902 1958 7.124901 ACAGAGAATGACCATAGTATGACTTGT 59.875 37.037 11.91 0.68 0.00 3.16
1903 1959 8.633561 CAGAGAATGACCATAGTATGACTTGTA 58.366 37.037 11.91 0.00 0.00 2.41
1904 1960 8.855110 AGAGAATGACCATAGTATGACTTGTAG 58.145 37.037 11.91 0.00 0.00 2.74
1905 1961 8.768501 AGAATGACCATAGTATGACTTGTAGA 57.231 34.615 11.91 0.00 0.00 2.59
1906 1962 8.634444 AGAATGACCATAGTATGACTTGTAGAC 58.366 37.037 11.91 0.00 0.00 2.59
1907 1963 6.710597 TGACCATAGTATGACTTGTAGACC 57.289 41.667 11.91 0.00 0.00 3.85
1908 1964 6.192044 TGACCATAGTATGACTTGTAGACCA 58.808 40.000 11.91 0.00 0.00 4.02
1909 1965 6.839134 TGACCATAGTATGACTTGTAGACCAT 59.161 38.462 11.91 0.00 0.00 3.55
1910 1966 7.055667 ACCATAGTATGACTTGTAGACCATG 57.944 40.000 11.91 0.00 0.00 3.66
1911 1967 6.042093 ACCATAGTATGACTTGTAGACCATGG 59.958 42.308 11.19 11.19 35.32 3.66
1912 1968 6.042093 CCATAGTATGACTTGTAGACCATGGT 59.958 42.308 19.89 19.89 0.00 3.55
1913 1969 5.599999 AGTATGACTTGTAGACCATGGTC 57.400 43.478 33.72 33.72 44.86 4.02
1922 1978 3.458872 GACCATGGTCGATGCAAGA 57.541 52.632 28.52 0.00 35.30 3.02
1923 1979 1.959042 GACCATGGTCGATGCAAGAT 58.041 50.000 28.52 0.00 35.30 2.40
1934 1990 5.203370 GTCGATGCAAGATGCTAATTCAAG 58.797 41.667 3.78 0.00 45.31 3.02
1940 1996 5.123820 TGCAAGATGCTAATTCAAGTGTACC 59.876 40.000 3.78 0.00 45.31 3.34
1962 2018 4.024048 CCGTGACACTAATGAGCTGTTTTT 60.024 41.667 3.68 0.00 0.00 1.94
1965 2021 6.265577 GTGACACTAATGAGCTGTTTTTGTT 58.734 36.000 0.00 0.00 0.00 2.83
2019 2157 5.749596 TGATTTGTTATAGGCATTCACCG 57.250 39.130 0.00 0.00 33.69 4.94
2105 2243 0.173255 AATTGCCGGTACAAGCATGC 59.827 50.000 10.51 10.51 37.12 4.06
2106 2244 0.680921 ATTGCCGGTACAAGCATGCT 60.681 50.000 16.30 16.30 37.12 3.79
2133 2271 1.385347 TGGACCACCACCTCCTGTT 60.385 57.895 0.00 0.00 41.77 3.16
2151 2289 3.275143 TGTTGAGGAAGTTCTCGCAAAA 58.725 40.909 2.25 0.40 36.61 2.44
2155 2293 6.038825 TGTTGAGGAAGTTCTCGCAAAAATTA 59.961 34.615 2.25 0.00 36.61 1.40
2315 2453 4.586235 AGCTGCCGGGCAACAAGT 62.586 61.111 23.94 0.00 38.41 3.16
2653 2791 2.270527 GCAGTTCCTGGAGGGAGC 59.729 66.667 0.00 0.00 46.01 4.70
2660 2798 4.463879 CTGGAGGGAGCAGTGCGG 62.464 72.222 10.00 0.00 0.00 5.69
2762 2905 7.168302 CCTTATAGTTTCTCGCTGACTACATTG 59.832 40.741 0.00 0.00 0.00 2.82
2984 3127 7.177184 TGAATACAGTACTACAGGTTGACCTA 58.823 38.462 1.66 0.00 46.65 3.08
3124 3277 5.172687 TCTTGCACCCATAGTTCATAACA 57.827 39.130 0.00 0.00 0.00 2.41
3125 3278 5.754782 TCTTGCACCCATAGTTCATAACAT 58.245 37.500 0.00 0.00 0.00 2.71
3176 3329 9.010029 TCTGTTAGAAGTTCTCTTTGTTGTTTT 57.990 29.630 9.12 0.00 35.41 2.43
3420 3573 5.476614 ACACGTAATTTCCAGGTAAGACTC 58.523 41.667 0.00 0.00 0.00 3.36
3428 3581 2.904434 TCCAGGTAAGACTCAGGTTTCC 59.096 50.000 0.00 0.00 0.00 3.13
3454 3607 9.118300 CTCTTTGCTATTTTTCCTGACTATGAT 57.882 33.333 0.00 0.00 0.00 2.45
3536 3690 9.883142 AAGAGATGCATATTTAGCTCTAATACC 57.117 33.333 12.30 0.00 32.83 2.73
3647 3801 4.759782 CACATTATGGTCGGAACTTCTCT 58.240 43.478 0.00 0.00 0.00 3.10
3648 3802 5.178797 CACATTATGGTCGGAACTTCTCTT 58.821 41.667 0.00 0.00 0.00 2.85
3749 3903 1.484240 CCAGGACCTTTCTAGAGCTGG 59.516 57.143 0.00 0.00 0.00 4.85
3769 3923 5.106712 GCTGGCAAGCGCAATATATAGTTAA 60.107 40.000 11.47 0.00 40.27 2.01
3965 4119 4.101741 AGGTACTATTTCAGAGCATCACCC 59.898 45.833 0.00 0.00 36.02 4.61
3969 4123 2.189594 TTTCAGAGCATCACCCTGTG 57.810 50.000 0.00 0.00 37.82 3.66
3980 4134 0.752054 CACCCTGTGCCAAATGTGTT 59.248 50.000 0.00 0.00 0.00 3.32
4021 4175 7.120051 TGATATCTCCTACATTCCTACCTAGC 58.880 42.308 3.98 0.00 0.00 3.42
4024 4178 6.721843 TCTCCTACATTCCTACCTAGCTAT 57.278 41.667 0.00 0.00 0.00 2.97
4026 4180 7.176490 TCTCCTACATTCCTACCTAGCTATTC 58.824 42.308 0.00 0.00 0.00 1.75
4027 4181 6.860034 TCCTACATTCCTACCTAGCTATTCA 58.140 40.000 0.00 0.00 0.00 2.57
4028 4182 6.720288 TCCTACATTCCTACCTAGCTATTCAC 59.280 42.308 0.00 0.00 0.00 3.18
4163 4320 8.632679 CATATTTCTTGCCTATTACCATGTTGT 58.367 33.333 0.00 0.00 0.00 3.32
4354 4511 7.076842 TCTTACTGCAGAAGAATTTACATGC 57.923 36.000 23.35 0.00 29.97 4.06
4462 4621 6.816640 GCCACATGTTAGAATCTGTACAAGTA 59.183 38.462 0.00 0.00 0.00 2.24
4502 4661 5.667626 AGGTGTCAGGATGTGGAGTATATTT 59.332 40.000 0.00 0.00 37.40 1.40
4829 5002 2.178912 TTGCTGAAAGGTCTAACCCG 57.821 50.000 0.00 0.00 39.75 5.28
4839 5012 3.606687 AGGTCTAACCCGCTTGTATTTG 58.393 45.455 0.00 0.00 39.75 2.32
4850 5023 4.685628 CCGCTTGTATTTGCTTGTTTCAAT 59.314 37.500 0.00 0.00 0.00 2.57
4938 5112 1.747355 GTCTGATGCTTGAACATGGGG 59.253 52.381 0.00 0.00 0.00 4.96
5024 5198 1.016130 CCGACGAAGCAGCTGACAAT 61.016 55.000 20.43 0.00 0.00 2.71
5219 5393 3.264104 CAACATGATGGGTGATTTTGGC 58.736 45.455 0.00 0.00 0.00 4.52
5225 5399 4.794439 GGTGATTTTGGCGGCGGC 62.794 66.667 27.76 27.76 38.90 6.53
5252 5426 3.860681 GGCATGCCCGATCCATTT 58.139 55.556 27.24 0.00 0.00 2.32
5279 5453 2.332654 GCGTGGCTTCCCATCGTTT 61.333 57.895 0.00 0.00 44.51 3.60
5282 5456 1.976474 TGGCTTCCCATCGTTTGGC 60.976 57.895 2.13 0.00 44.97 4.52
5315 5489 4.475135 GGCGACTTCCCCAGAGGC 62.475 72.222 0.00 0.00 34.51 4.70
5339 5513 2.988839 GCCTGGCATGGTCTTCCCT 61.989 63.158 15.17 0.00 0.00 4.20
5426 5600 2.597340 CCGCTCATGGGAATGGGT 59.403 61.111 0.00 0.00 0.00 4.51
5429 5603 1.614711 GCTCATGGGAATGGGTGGA 59.385 57.895 0.00 0.00 0.00 4.02
5594 5768 2.560861 CATGACAACAACGCCGGG 59.439 61.111 2.18 0.00 0.00 5.73
5648 5822 2.584391 GGACAGGTTCGGCAGGAGT 61.584 63.158 0.00 0.00 0.00 3.85
5718 5892 0.178068 GTCAAGGAAGCGATAGGGCA 59.822 55.000 0.00 0.00 34.64 5.36
5721 5895 2.650813 AAGGAAGCGATAGGGCAGCG 62.651 60.000 0.00 0.00 39.63 5.18
5725 5899 3.330853 GCGATAGGGCAGCGAACG 61.331 66.667 0.00 0.00 38.68 3.95
5726 5900 2.411701 CGATAGGGCAGCGAACGA 59.588 61.111 0.00 0.00 38.68 3.85
5728 5902 1.437986 GATAGGGCAGCGAACGAGT 59.562 57.895 0.00 0.00 0.00 4.18
5730 5904 2.907897 ATAGGGCAGCGAACGAGTGC 62.908 60.000 11.59 11.59 36.42 4.40
5762 5936 2.356125 CCAACCTTTGATCCGTGGAGAT 60.356 50.000 0.00 0.00 0.00 2.75
5781 5955 5.702865 GAGATTGATCATCTTCTCCTCTCG 58.297 45.833 15.12 0.00 42.92 4.04
5786 5975 0.388659 CATCTTCTCCTCTCGGCTGG 59.611 60.000 0.00 0.00 0.00 4.85
5885 6074 0.798771 GATGGTGTCGTCGACTCTGC 60.799 60.000 24.75 10.95 33.15 4.26
6035 6226 7.050377 CCAGTTAGGACTCATATGACAAATGT 58.950 38.462 0.00 0.00 41.22 2.71
6042 6233 7.550551 AGGACTCATATGACAAATGTAGTGTTG 59.449 37.037 0.00 0.00 0.00 3.33
6054 6245 9.344772 ACAAATGTAGTGTTGGTTAAGAACATA 57.655 29.630 3.85 0.00 35.81 2.29
6056 6247 9.569122 AAATGTAGTGTTGGTTAAGAACATACT 57.431 29.630 3.85 0.00 35.81 2.12
6062 6253 4.010667 TGGTTAAGAACATACTTGCCGT 57.989 40.909 0.00 0.00 32.87 5.68
6065 6256 2.185004 AAGAACATACTTGCCGTGCT 57.815 45.000 0.00 0.00 0.00 4.40
6077 6268 4.142026 ACTTGCCGTGCTGTGTTATATAGA 60.142 41.667 0.00 0.00 0.00 1.98
6078 6269 3.977427 TGCCGTGCTGTGTTATATAGAG 58.023 45.455 0.00 0.00 0.00 2.43
6079 6270 3.383505 TGCCGTGCTGTGTTATATAGAGT 59.616 43.478 0.00 0.00 0.00 3.24
6080 6271 4.581409 TGCCGTGCTGTGTTATATAGAGTA 59.419 41.667 0.00 0.00 0.00 2.59
6081 6272 5.154932 GCCGTGCTGTGTTATATAGAGTAG 58.845 45.833 0.00 0.00 0.00 2.57
6082 6273 5.278364 GCCGTGCTGTGTTATATAGAGTAGT 60.278 44.000 0.00 0.00 0.00 2.73
6083 6274 6.735145 GCCGTGCTGTGTTATATAGAGTAGTT 60.735 42.308 0.00 0.00 0.00 2.24
6147 6348 0.795085 GTCTGTGTCTGTCATGCTGC 59.205 55.000 0.00 0.00 0.00 5.25
6183 6384 3.817647 GCCTGATGAGTGAAGTTCAGTTT 59.182 43.478 14.37 5.83 35.01 2.66
6193 6394 8.397906 TGAGTGAAGTTCAGTTTGTTCTTAATG 58.602 33.333 14.37 0.00 28.50 1.90
6197 6398 9.066892 TGAAGTTCAGTTTGTTCTTAATGCTAT 57.933 29.630 0.08 0.00 0.00 2.97
6198 6399 9.334693 GAAGTTCAGTTTGTTCTTAATGCTATG 57.665 33.333 0.00 0.00 0.00 2.23
6199 6400 7.308435 AGTTCAGTTTGTTCTTAATGCTATGC 58.692 34.615 0.00 0.00 0.00 3.14
6200 6401 7.175641 AGTTCAGTTTGTTCTTAATGCTATGCT 59.824 33.333 0.00 0.00 0.00 3.79
6219 6420 4.388485 TGCTAGTTTTCTCATTCTGTGCA 58.612 39.130 0.00 0.00 0.00 4.57
6264 6465 4.335416 TGAGCTTGATGGTTTCTTTAGGG 58.665 43.478 0.00 0.00 0.00 3.53
6265 6466 3.696548 GAGCTTGATGGTTTCTTTAGGGG 59.303 47.826 0.00 0.00 0.00 4.79
6287 6489 5.701224 GGGGGTGAATGGAGATACAAAATA 58.299 41.667 0.00 0.00 0.00 1.40
6301 6503 1.862201 CAAAATATGCCATTGCCAGCG 59.138 47.619 0.00 0.00 36.33 5.18
6302 6504 0.390124 AAATATGCCATTGCCAGCGG 59.610 50.000 0.00 0.00 36.33 5.52
6314 6516 4.318021 CAGCGGCGCACATATGGC 62.318 66.667 35.02 6.87 0.00 4.40
6330 6535 2.185867 GCATGGCATGGCAGGTTG 59.814 61.111 30.72 22.84 0.00 3.77
6332 6537 1.682451 GCATGGCATGGCAGGTTGAT 61.682 55.000 30.72 10.25 0.00 2.57
6333 6538 0.104120 CATGGCATGGCAGGTTGATG 59.896 55.000 27.02 15.26 0.00 3.07
6334 6539 0.032912 ATGGCATGGCAGGTTGATGA 60.033 50.000 27.02 0.00 0.00 2.92
6335 6540 0.966875 TGGCATGGCAGGTTGATGAC 60.967 55.000 19.43 0.00 0.00 3.06
6336 6541 0.682209 GGCATGGCAGGTTGATGACT 60.682 55.000 15.47 0.00 0.00 3.41
6344 6549 1.078426 GGTTGATGACTGACGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
6369 6574 2.045708 GGCCATGGACGCATGTGAA 61.046 57.895 18.40 0.00 0.00 3.18
6383 6588 0.324614 TGTGAATGCACCGATGGAGT 59.675 50.000 0.00 0.00 44.51 3.85
6384 6589 1.271325 TGTGAATGCACCGATGGAGTT 60.271 47.619 0.00 0.00 44.51 3.01
6385 6590 1.131126 GTGAATGCACCGATGGAGTTG 59.869 52.381 0.00 0.00 39.14 3.16
6386 6591 0.734889 GAATGCACCGATGGAGTTGG 59.265 55.000 0.00 0.00 37.40 3.77
6387 6592 1.315257 AATGCACCGATGGAGTTGGC 61.315 55.000 0.00 0.00 34.32 4.52
6388 6593 2.359850 GCACCGATGGAGTTGGCA 60.360 61.111 0.00 0.00 34.32 4.92
6402 6607 2.102578 GTTGGCATTAGCAATGGACCT 58.897 47.619 9.81 0.00 44.61 3.85
6411 6616 1.530013 GCAATGGACCTGCACTTGCT 61.530 55.000 2.33 0.00 42.66 3.91
6412 6617 0.242825 CAATGGACCTGCACTTGCTG 59.757 55.000 2.33 1.78 42.66 4.41
6414 6619 0.178981 ATGGACCTGCACTTGCTGTT 60.179 50.000 2.33 0.00 42.66 3.16
6415 6620 1.102809 TGGACCTGCACTTGCTGTTG 61.103 55.000 2.33 0.00 42.66 3.33
6479 6688 1.980765 ACCTGAATCTGAACCTGAGCA 59.019 47.619 0.00 0.00 0.00 4.26
6480 6689 2.027377 ACCTGAATCTGAACCTGAGCAG 60.027 50.000 0.00 0.00 0.00 4.24
6481 6690 2.235650 CCTGAATCTGAACCTGAGCAGA 59.764 50.000 0.00 0.00 44.43 4.26
6482 6691 3.307269 CCTGAATCTGAACCTGAGCAGAA 60.307 47.826 0.00 0.00 43.63 3.02
6483 6692 3.933955 CTGAATCTGAACCTGAGCAGAAG 59.066 47.826 0.00 0.00 43.63 2.85
6503 6712 7.504403 CAGAAGCAGAAGGGAATCTATCTTTA 58.496 38.462 0.00 0.00 0.00 1.85
6506 6715 5.367937 AGCAGAAGGGAATCTATCTTTAGCA 59.632 40.000 0.00 0.00 0.00 3.49
6510 6719 7.011857 CAGAAGGGAATCTATCTTTAGCACAAC 59.988 40.741 0.00 0.00 0.00 3.32
6511 6720 5.685728 AGGGAATCTATCTTTAGCACAACC 58.314 41.667 0.00 0.00 0.00 3.77
6570 6779 3.076278 CACGCATGGGGGCCAAAT 61.076 61.111 14.94 0.00 36.95 2.32
6571 6780 2.284552 ACGCATGGGGGCCAAATT 60.285 55.556 14.94 0.00 36.95 1.82
6572 6781 1.917787 ACGCATGGGGGCCAAATTT 60.918 52.632 14.94 0.00 36.95 1.82
6573 6782 1.153389 CGCATGGGGGCCAAATTTC 60.153 57.895 4.39 0.00 36.95 2.17
6574 6783 1.153389 GCATGGGGGCCAAATTTCG 60.153 57.895 4.39 0.00 36.95 3.46
6575 6784 1.898330 GCATGGGGGCCAAATTTCGT 61.898 55.000 4.39 0.00 36.95 3.85
6576 6785 0.108233 CATGGGGGCCAAATTTCGTG 60.108 55.000 4.39 0.00 36.95 4.35
6577 6786 0.544120 ATGGGGGCCAAATTTCGTGT 60.544 50.000 4.39 0.00 36.95 4.49
6578 6787 0.760945 TGGGGGCCAAATTTCGTGTT 60.761 50.000 4.39 0.00 0.00 3.32
6579 6788 0.394938 GGGGGCCAAATTTCGTGTTT 59.605 50.000 4.39 0.00 0.00 2.83
6580 6789 1.202710 GGGGGCCAAATTTCGTGTTTT 60.203 47.619 4.39 0.00 0.00 2.43
6581 6790 1.870402 GGGGCCAAATTTCGTGTTTTG 59.130 47.619 4.39 0.00 33.58 2.44
6582 6791 2.483889 GGGGCCAAATTTCGTGTTTTGA 60.484 45.455 4.39 0.00 35.34 2.69
6583 6792 2.542178 GGGCCAAATTTCGTGTTTTGAC 59.458 45.455 4.39 0.00 35.34 3.18
6584 6793 2.542178 GGCCAAATTTCGTGTTTTGACC 59.458 45.455 0.00 3.43 35.34 4.02
6585 6794 2.542178 GCCAAATTTCGTGTTTTGACCC 59.458 45.455 7.82 0.00 35.34 4.46
6586 6795 3.739830 GCCAAATTTCGTGTTTTGACCCT 60.740 43.478 7.82 0.00 35.34 4.34
6587 6796 4.438148 CCAAATTTCGTGTTTTGACCCTT 58.562 39.130 7.82 0.00 35.34 3.95
6588 6797 4.873259 CCAAATTTCGTGTTTTGACCCTTT 59.127 37.500 7.82 0.00 35.34 3.11
6589 6798 5.352846 CCAAATTTCGTGTTTTGACCCTTTT 59.647 36.000 7.82 0.00 35.34 2.27
6590 6799 6.128145 CCAAATTTCGTGTTTTGACCCTTTTT 60.128 34.615 7.82 0.00 35.34 1.94
6591 6800 6.415798 AATTTCGTGTTTTGACCCTTTTTG 57.584 33.333 0.00 0.00 0.00 2.44
6592 6801 3.512033 TCGTGTTTTGACCCTTTTTGG 57.488 42.857 0.00 0.00 0.00 3.28
6593 6802 3.090037 TCGTGTTTTGACCCTTTTTGGA 58.910 40.909 0.00 0.00 38.35 3.53
6594 6803 3.702045 TCGTGTTTTGACCCTTTTTGGAT 59.298 39.130 0.00 0.00 38.35 3.41
6595 6804 4.888239 TCGTGTTTTGACCCTTTTTGGATA 59.112 37.500 0.00 0.00 38.35 2.59
6596 6805 5.009210 TCGTGTTTTGACCCTTTTTGGATAG 59.991 40.000 0.00 0.00 38.35 2.08
6597 6806 5.221165 CGTGTTTTGACCCTTTTTGGATAGT 60.221 40.000 0.00 0.00 38.35 2.12
6598 6807 6.016943 CGTGTTTTGACCCTTTTTGGATAGTA 60.017 38.462 0.00 0.00 38.35 1.82
6599 6808 7.308951 CGTGTTTTGACCCTTTTTGGATAGTAT 60.309 37.037 0.00 0.00 38.35 2.12
6600 6809 8.364894 GTGTTTTGACCCTTTTTGGATAGTATT 58.635 33.333 0.00 0.00 38.35 1.89
6601 6810 8.929487 TGTTTTGACCCTTTTTGGATAGTATTT 58.071 29.630 0.00 0.00 38.35 1.40
6602 6811 9.419297 GTTTTGACCCTTTTTGGATAGTATTTC 57.581 33.333 0.00 0.00 38.35 2.17
6603 6812 8.713708 TTTGACCCTTTTTGGATAGTATTTCA 57.286 30.769 0.00 0.00 38.35 2.69
6604 6813 7.938140 TGACCCTTTTTGGATAGTATTTCAG 57.062 36.000 0.00 0.00 38.35 3.02
6605 6814 6.889722 TGACCCTTTTTGGATAGTATTTCAGG 59.110 38.462 0.00 0.00 38.35 3.86
6606 6815 7.039722 ACCCTTTTTGGATAGTATTTCAGGA 57.960 36.000 0.00 0.00 38.35 3.86
6607 6816 7.652554 ACCCTTTTTGGATAGTATTTCAGGAT 58.347 34.615 0.00 0.00 38.35 3.24
6608 6817 7.780271 ACCCTTTTTGGATAGTATTTCAGGATC 59.220 37.037 0.00 0.00 38.35 3.36
6609 6818 7.231519 CCCTTTTTGGATAGTATTTCAGGATCC 59.768 40.741 2.48 2.48 38.35 3.36
6610 6819 7.041098 CCTTTTTGGATAGTATTTCAGGATCCG 60.041 40.741 5.98 1.36 39.19 4.18
6611 6820 6.740944 TTTGGATAGTATTTCAGGATCCGA 57.259 37.500 5.98 4.05 39.19 4.55
6612 6821 5.723672 TGGATAGTATTTCAGGATCCGAC 57.276 43.478 5.98 0.00 39.19 4.79
6613 6822 4.527038 TGGATAGTATTTCAGGATCCGACC 59.473 45.833 5.98 2.98 39.19 4.79
6614 6823 4.081586 GGATAGTATTTCAGGATCCGACCC 60.082 50.000 5.98 0.00 0.00 4.46
6615 6824 2.047830 AGTATTTCAGGATCCGACCCC 58.952 52.381 5.98 0.00 0.00 4.95
6616 6825 2.047830 GTATTTCAGGATCCGACCCCT 58.952 52.381 5.98 0.00 0.00 4.79
6619 6828 3.727387 CAGGATCCGACCCCTGTT 58.273 61.111 5.98 0.00 43.71 3.16
6620 6829 1.991230 CAGGATCCGACCCCTGTTT 59.009 57.895 5.98 0.00 43.71 2.83
6621 6830 0.392998 CAGGATCCGACCCCTGTTTG 60.393 60.000 5.98 0.00 43.71 2.93
6622 6831 0.546747 AGGATCCGACCCCTGTTTGA 60.547 55.000 5.98 0.00 0.00 2.69
6623 6832 0.326927 GGATCCGACCCCTGTTTGAA 59.673 55.000 0.00 0.00 0.00 2.69
6624 6833 1.064685 GGATCCGACCCCTGTTTGAAT 60.065 52.381 0.00 0.00 0.00 2.57
6625 6834 2.620627 GGATCCGACCCCTGTTTGAATT 60.621 50.000 0.00 0.00 0.00 2.17
6626 6835 2.668144 TCCGACCCCTGTTTGAATTT 57.332 45.000 0.00 0.00 0.00 1.82
6627 6836 2.952116 TCCGACCCCTGTTTGAATTTT 58.048 42.857 0.00 0.00 0.00 1.82
6628 6837 3.301274 TCCGACCCCTGTTTGAATTTTT 58.699 40.909 0.00 0.00 0.00 1.94
6650 6859 5.612725 TTTTGAGATTTGACCCTTTTGCT 57.387 34.783 0.00 0.00 0.00 3.91
6651 6860 6.723298 TTTTGAGATTTGACCCTTTTGCTA 57.277 33.333 0.00 0.00 0.00 3.49
6652 6861 5.705609 TTGAGATTTGACCCTTTTGCTAC 57.294 39.130 0.00 0.00 0.00 3.58
6653 6862 4.079253 TGAGATTTGACCCTTTTGCTACC 58.921 43.478 0.00 0.00 0.00 3.18
6654 6863 3.081804 AGATTTGACCCTTTTGCTACCG 58.918 45.455 0.00 0.00 0.00 4.02
6655 6864 0.955905 TTTGACCCTTTTGCTACCGC 59.044 50.000 0.00 0.00 0.00 5.68
6656 6865 0.891904 TTGACCCTTTTGCTACCGCC 60.892 55.000 0.00 0.00 34.43 6.13
6657 6866 1.302993 GACCCTTTTGCTACCGCCA 60.303 57.895 0.00 0.00 34.43 5.69
6658 6867 1.303317 ACCCTTTTGCTACCGCCAG 60.303 57.895 0.00 0.00 34.43 4.85
6659 6868 2.046285 CCCTTTTGCTACCGCCAGG 61.046 63.158 0.00 0.00 45.13 4.45
6660 6869 2.046285 CCTTTTGCTACCGCCAGGG 61.046 63.158 0.00 0.00 43.47 4.45
6661 6870 2.675075 TTTTGCTACCGCCAGGGC 60.675 61.111 0.00 0.00 43.47 5.19
6662 6871 4.733542 TTTGCTACCGCCAGGGCC 62.734 66.667 4.42 0.00 43.47 5.80
6666 6875 3.854669 CTACCGCCAGGGCCTCTG 61.855 72.222 0.95 12.83 43.47 3.35
6677 6886 3.400054 GCCTCTGGCGGTAGGGTT 61.400 66.667 12.00 0.00 39.62 4.11
6678 6887 2.062177 GCCTCTGGCGGTAGGGTTA 61.062 63.158 12.00 0.00 39.62 2.85
6679 6888 1.619807 GCCTCTGGCGGTAGGGTTAA 61.620 60.000 12.00 0.00 39.62 2.01
6680 6889 0.906775 CCTCTGGCGGTAGGGTTAAA 59.093 55.000 0.00 0.00 0.00 1.52
6681 6890 1.489230 CCTCTGGCGGTAGGGTTAAAT 59.511 52.381 0.00 0.00 0.00 1.40
6682 6891 2.701951 CCTCTGGCGGTAGGGTTAAATA 59.298 50.000 0.00 0.00 0.00 1.40
6683 6892 3.244112 CCTCTGGCGGTAGGGTTAAATAG 60.244 52.174 0.00 0.00 0.00 1.73
6684 6893 2.103601 TCTGGCGGTAGGGTTAAATAGC 59.896 50.000 0.00 0.00 0.00 2.97
6685 6894 1.141455 TGGCGGTAGGGTTAAATAGCC 59.859 52.381 0.00 0.00 45.13 3.93
6692 6901 1.888215 GGGTTAAATAGCCTACCGCC 58.112 55.000 0.00 0.00 41.39 6.13
6693 6902 1.141455 GGGTTAAATAGCCTACCGCCA 59.859 52.381 0.00 0.00 41.39 5.69
6694 6903 2.216046 GGTTAAATAGCCTACCGCCAC 58.784 52.381 0.00 0.00 38.78 5.01
6695 6904 1.862827 GTTAAATAGCCTACCGCCACG 59.137 52.381 0.00 0.00 38.78 4.94
6713 6922 4.109675 GCCCATGGCGGTAGGTGT 62.110 66.667 6.09 0.00 39.62 4.16
6714 6923 2.124736 CCCATGGCGGTAGGTGTG 60.125 66.667 6.09 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
640 684 1.006102 CTGCTTCTGGTCGTCCGTT 60.006 57.895 0.00 0.00 36.30 4.44
749 794 8.275743 ACCAAATGTCGGTCGAAAGATATCTTT 61.276 37.037 26.98 26.98 45.19 2.52
750 795 5.523916 CCAAATGTCGGTCGAAAGATATCTT 59.476 40.000 12.37 12.37 45.19 2.40
751 796 5.050490 CCAAATGTCGGTCGAAAGATATCT 58.950 41.667 0.00 0.00 45.19 1.98
752 797 4.809426 ACCAAATGTCGGTCGAAAGATATC 59.191 41.667 0.00 0.00 45.19 1.63
753 798 4.766375 ACCAAATGTCGGTCGAAAGATAT 58.234 39.130 0.00 0.00 45.19 1.63
804 849 2.047274 CTGGCGTTGGTCGGATGT 60.047 61.111 0.00 0.00 40.26 3.06
820 865 4.783764 AAGCTTATTTTTAAGGCGTGCT 57.216 36.364 0.00 0.00 0.00 4.40
821 866 5.839262 AAAAGCTTATTTTTAAGGCGTGC 57.161 34.783 0.00 0.00 0.00 5.34
969 1023 2.111792 AGGTTAGGGTTTGGGCAATCTT 59.888 45.455 0.00 0.00 0.00 2.40
976 1030 0.698818 AGCTGAGGTTAGGGTTTGGG 59.301 55.000 0.00 0.00 0.00 4.12
1365 1419 1.571773 AATAGCTTTGGGGGAGCGGT 61.572 55.000 0.00 0.00 44.71 5.68
1392 1447 7.770366 AATTAACTACTTCCCGACCAAATTT 57.230 32.000 0.00 0.00 0.00 1.82
1551 1607 4.005650 TCACAGCAATCTCAAAGCCTAAG 58.994 43.478 0.00 0.00 0.00 2.18
1581 1637 4.978083 ACAATTGAAGACTGATCCATGC 57.022 40.909 13.59 0.00 0.00 4.06
1590 1646 8.375506 TGAACTACAGGATAACAATTGAAGACT 58.624 33.333 13.59 0.69 0.00 3.24
1640 1696 6.569228 CAGCAATCAAAACTGCATTCTATG 57.431 37.500 0.00 0.00 41.17 2.23
1650 1706 4.859304 TCAATCAGCAGCAATCAAAACT 57.141 36.364 0.00 0.00 0.00 2.66
1709 1765 1.412710 TCTCTGTCGCAACCAACTTCT 59.587 47.619 0.00 0.00 0.00 2.85
1722 1778 7.283625 AGTCATACTATGGTCATTCTCTGTC 57.716 40.000 0.00 0.00 0.00 3.51
1771 1827 3.991773 TGTCACGGTACACTTGAATTAGC 59.008 43.478 0.00 0.00 0.00 3.09
1772 1828 5.511088 GTGTCACGGTACACTTGAATTAG 57.489 43.478 13.47 0.00 45.12 1.73
1782 1838 2.559231 TGCTCATTAGTGTCACGGTACA 59.441 45.455 0.00 0.00 0.00 2.90
1783 1839 3.179830 CTGCTCATTAGTGTCACGGTAC 58.820 50.000 0.00 0.00 0.00 3.34
1784 1840 2.823747 ACTGCTCATTAGTGTCACGGTA 59.176 45.455 0.00 0.00 0.00 4.02
1785 1841 1.618837 ACTGCTCATTAGTGTCACGGT 59.381 47.619 0.00 0.00 0.00 4.83
1786 1842 2.370281 ACTGCTCATTAGTGTCACGG 57.630 50.000 0.00 0.00 0.00 4.94
1787 1843 4.211164 TCAAAACTGCTCATTAGTGTCACG 59.789 41.667 0.00 0.00 0.00 4.35
1788 1844 5.673337 TCAAAACTGCTCATTAGTGTCAC 57.327 39.130 0.00 0.00 0.00 3.67
1789 1845 6.671190 CAATCAAAACTGCTCATTAGTGTCA 58.329 36.000 0.00 0.00 0.00 3.58
1790 1846 5.570589 GCAATCAAAACTGCTCATTAGTGTC 59.429 40.000 0.00 0.00 35.62 3.67
1791 1847 5.242393 AGCAATCAAAACTGCTCATTAGTGT 59.758 36.000 0.00 0.00 45.79 3.55
1792 1848 5.571741 CAGCAATCAAAACTGCTCATTAGTG 59.428 40.000 0.00 0.00 45.79 2.74
1793 1849 5.706916 CAGCAATCAAAACTGCTCATTAGT 58.293 37.500 0.00 0.00 45.79 2.24
1802 1858 4.552355 TCAATCAGCAGCAATCAAAACTG 58.448 39.130 0.00 0.00 34.48 3.16
1803 1859 4.859304 TCAATCAGCAGCAATCAAAACT 57.141 36.364 0.00 0.00 0.00 2.66
1804 1860 5.867716 AGATTCAATCAGCAGCAATCAAAAC 59.132 36.000 0.00 0.00 0.00 2.43
1805 1861 6.032956 AGATTCAATCAGCAGCAATCAAAA 57.967 33.333 0.00 0.00 0.00 2.44
1806 1862 5.654603 AGATTCAATCAGCAGCAATCAAA 57.345 34.783 0.00 0.00 0.00 2.69
1807 1863 5.884232 AGTAGATTCAATCAGCAGCAATCAA 59.116 36.000 0.00 0.00 0.00 2.57
1808 1864 5.296035 CAGTAGATTCAATCAGCAGCAATCA 59.704 40.000 0.00 0.00 0.00 2.57
1809 1865 5.526479 TCAGTAGATTCAATCAGCAGCAATC 59.474 40.000 0.00 0.00 0.00 2.67
1810 1866 5.296283 GTCAGTAGATTCAATCAGCAGCAAT 59.704 40.000 0.00 0.00 0.00 3.56
1811 1867 4.633126 GTCAGTAGATTCAATCAGCAGCAA 59.367 41.667 0.00 0.00 0.00 3.91
1812 1868 4.186926 GTCAGTAGATTCAATCAGCAGCA 58.813 43.478 0.00 0.00 0.00 4.41
1813 1869 4.186926 TGTCAGTAGATTCAATCAGCAGC 58.813 43.478 0.00 0.00 0.00 5.25
1814 1870 5.640783 TGTTGTCAGTAGATTCAATCAGCAG 59.359 40.000 0.00 0.00 0.00 4.24
1815 1871 5.550290 TGTTGTCAGTAGATTCAATCAGCA 58.450 37.500 0.00 0.00 0.00 4.41
1816 1872 6.674694 ATGTTGTCAGTAGATTCAATCAGC 57.325 37.500 0.00 0.00 0.00 4.26
1829 1885 9.764363 ATGTGTTTCGATATATATGTTGTCAGT 57.236 29.630 0.00 0.00 0.00 3.41
1841 1897 9.647797 ACTTCTTGTACAATGTGTTTCGATATA 57.352 29.630 9.13 0.00 0.00 0.86
1842 1898 8.547967 ACTTCTTGTACAATGTGTTTCGATAT 57.452 30.769 9.13 0.00 0.00 1.63
1843 1899 7.956420 ACTTCTTGTACAATGTGTTTCGATA 57.044 32.000 9.13 0.00 0.00 2.92
1844 1900 6.861065 ACTTCTTGTACAATGTGTTTCGAT 57.139 33.333 9.13 0.00 0.00 3.59
1845 1901 6.457663 CCAACTTCTTGTACAATGTGTTTCGA 60.458 38.462 9.13 0.00 0.00 3.71
1846 1902 5.681105 CCAACTTCTTGTACAATGTGTTTCG 59.319 40.000 9.13 4.12 0.00 3.46
1847 1903 6.560711 ACCAACTTCTTGTACAATGTGTTTC 58.439 36.000 9.13 0.00 0.00 2.78
1848 1904 6.524101 ACCAACTTCTTGTACAATGTGTTT 57.476 33.333 9.13 0.00 0.00 2.83
1849 1905 6.329496 CAACCAACTTCTTGTACAATGTGTT 58.671 36.000 9.13 10.82 0.00 3.32
1850 1906 5.678616 GCAACCAACTTCTTGTACAATGTGT 60.679 40.000 9.13 5.33 0.00 3.72
1851 1907 4.739716 GCAACCAACTTCTTGTACAATGTG 59.260 41.667 9.13 4.71 0.00 3.21
1852 1908 4.497340 CGCAACCAACTTCTTGTACAATGT 60.497 41.667 9.13 6.03 0.00 2.71
1853 1909 3.974401 CGCAACCAACTTCTTGTACAATG 59.026 43.478 9.13 3.95 0.00 2.82
1854 1910 3.880490 TCGCAACCAACTTCTTGTACAAT 59.120 39.130 9.13 0.00 0.00 2.71
1855 1911 3.064271 GTCGCAACCAACTTCTTGTACAA 59.936 43.478 8.28 8.28 0.00 2.41
1856 1912 2.610374 GTCGCAACCAACTTCTTGTACA 59.390 45.455 0.00 0.00 0.00 2.90
1857 1913 2.610374 TGTCGCAACCAACTTCTTGTAC 59.390 45.455 0.00 0.00 0.00 2.90
1858 1914 2.869801 CTGTCGCAACCAACTTCTTGTA 59.130 45.455 0.00 0.00 0.00 2.41
1859 1915 1.670811 CTGTCGCAACCAACTTCTTGT 59.329 47.619 0.00 0.00 0.00 3.16
1860 1916 1.939934 TCTGTCGCAACCAACTTCTTG 59.060 47.619 0.00 0.00 0.00 3.02
1861 1917 2.158957 TCTCTGTCGCAACCAACTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
1862 1918 1.412710 TCTCTGTCGCAACCAACTTCT 59.587 47.619 0.00 0.00 0.00 2.85
1863 1919 1.865865 TCTCTGTCGCAACCAACTTC 58.134 50.000 0.00 0.00 0.00 3.01
1864 1920 2.325583 TTCTCTGTCGCAACCAACTT 57.674 45.000 0.00 0.00 0.00 2.66
1865 1921 2.146342 CATTCTCTGTCGCAACCAACT 58.854 47.619 0.00 0.00 0.00 3.16
1866 1922 2.096218 GTCATTCTCTGTCGCAACCAAC 60.096 50.000 0.00 0.00 0.00 3.77
1867 1923 2.143122 GTCATTCTCTGTCGCAACCAA 58.857 47.619 0.00 0.00 0.00 3.67
1868 1924 1.608025 GGTCATTCTCTGTCGCAACCA 60.608 52.381 0.00 0.00 0.00 3.67
1869 1925 1.079503 GGTCATTCTCTGTCGCAACC 58.920 55.000 0.00 0.00 0.00 3.77
1870 1926 1.795768 TGGTCATTCTCTGTCGCAAC 58.204 50.000 0.00 0.00 0.00 4.17
1871 1927 2.768253 ATGGTCATTCTCTGTCGCAA 57.232 45.000 0.00 0.00 0.00 4.85
1872 1928 2.760650 ACTATGGTCATTCTCTGTCGCA 59.239 45.455 0.00 0.00 0.00 5.10
1873 1929 3.444703 ACTATGGTCATTCTCTGTCGC 57.555 47.619 0.00 0.00 0.00 5.19
1874 1930 6.016693 AGTCATACTATGGTCATTCTCTGTCG 60.017 42.308 0.00 0.00 0.00 4.35
1875 1931 7.283625 AGTCATACTATGGTCATTCTCTGTC 57.716 40.000 0.00 0.00 0.00 3.51
1876 1932 7.124901 ACAAGTCATACTATGGTCATTCTCTGT 59.875 37.037 0.00 0.00 0.00 3.41
1877 1933 7.495901 ACAAGTCATACTATGGTCATTCTCTG 58.504 38.462 0.00 0.00 0.00 3.35
1878 1934 7.667575 ACAAGTCATACTATGGTCATTCTCT 57.332 36.000 0.00 0.00 0.00 3.10
1879 1935 8.851145 TCTACAAGTCATACTATGGTCATTCTC 58.149 37.037 0.00 0.00 0.00 2.87
1880 1936 8.634444 GTCTACAAGTCATACTATGGTCATTCT 58.366 37.037 0.00 0.00 0.00 2.40
1881 1937 7.868415 GGTCTACAAGTCATACTATGGTCATTC 59.132 40.741 0.00 0.00 0.00 2.67
1882 1938 7.344612 TGGTCTACAAGTCATACTATGGTCATT 59.655 37.037 0.00 0.00 0.00 2.57
1883 1939 6.839134 TGGTCTACAAGTCATACTATGGTCAT 59.161 38.462 0.00 0.00 0.00 3.06
1884 1940 6.192044 TGGTCTACAAGTCATACTATGGTCA 58.808 40.000 0.00 0.00 0.00 4.02
1885 1941 6.710597 TGGTCTACAAGTCATACTATGGTC 57.289 41.667 0.00 0.00 0.00 4.02
1886 1942 6.042093 CCATGGTCTACAAGTCATACTATGGT 59.958 42.308 2.57 0.00 41.61 3.55
1887 1943 6.459066 CCATGGTCTACAAGTCATACTATGG 58.541 44.000 2.57 0.00 41.05 2.74
1888 1944 7.055667 ACCATGGTCTACAAGTCATACTATG 57.944 40.000 13.00 0.00 0.00 2.23
1889 1945 6.016192 CGACCATGGTCTACAAGTCATACTAT 60.016 42.308 35.84 0.72 42.54 2.12
1890 1946 5.298527 CGACCATGGTCTACAAGTCATACTA 59.701 44.000 35.84 0.00 42.54 1.82
1891 1947 4.098044 CGACCATGGTCTACAAGTCATACT 59.902 45.833 35.84 1.51 42.54 2.12
1892 1948 4.097437 TCGACCATGGTCTACAAGTCATAC 59.903 45.833 35.84 11.65 42.54 2.39
1893 1949 4.274978 TCGACCATGGTCTACAAGTCATA 58.725 43.478 35.84 7.39 42.54 2.15
1894 1950 3.096852 TCGACCATGGTCTACAAGTCAT 58.903 45.455 35.84 2.90 42.54 3.06
1895 1951 2.521126 TCGACCATGGTCTACAAGTCA 58.479 47.619 35.84 11.62 42.54 3.41
1896 1952 3.448686 CATCGACCATGGTCTACAAGTC 58.551 50.000 35.84 13.73 42.54 3.01
1897 1953 2.418746 GCATCGACCATGGTCTACAAGT 60.419 50.000 35.84 13.05 42.54 3.16
1898 1954 2.205074 GCATCGACCATGGTCTACAAG 58.795 52.381 35.84 22.99 42.54 3.16
1899 1955 1.552792 TGCATCGACCATGGTCTACAA 59.447 47.619 35.84 21.61 42.54 2.41
1900 1956 1.190643 TGCATCGACCATGGTCTACA 58.809 50.000 35.84 25.76 42.54 2.74
1901 1957 2.159099 TCTTGCATCGACCATGGTCTAC 60.159 50.000 35.84 23.86 42.54 2.59
1902 1958 2.107366 TCTTGCATCGACCATGGTCTA 58.893 47.619 35.84 28.68 42.54 2.59
1903 1959 0.904649 TCTTGCATCGACCATGGTCT 59.095 50.000 35.84 20.34 42.54 3.85
1904 1960 1.600957 CATCTTGCATCGACCATGGTC 59.399 52.381 31.59 31.59 41.40 4.02
1905 1961 1.671979 CATCTTGCATCGACCATGGT 58.328 50.000 19.89 19.89 32.37 3.55
1906 1962 0.309922 GCATCTTGCATCGACCATGG 59.690 55.000 11.19 11.19 44.26 3.66
1907 1963 3.839654 GCATCTTGCATCGACCATG 57.160 52.632 0.00 0.00 44.26 3.66
1917 1973 5.573146 GGTACACTTGAATTAGCATCTTGC 58.427 41.667 0.00 0.00 45.46 4.01
1918 1974 5.351465 ACGGTACACTTGAATTAGCATCTTG 59.649 40.000 0.00 0.00 0.00 3.02
1919 1975 5.351465 CACGGTACACTTGAATTAGCATCTT 59.649 40.000 0.00 0.00 0.00 2.40
1920 1976 4.870426 CACGGTACACTTGAATTAGCATCT 59.130 41.667 0.00 0.00 0.00 2.90
1921 1977 4.868171 TCACGGTACACTTGAATTAGCATC 59.132 41.667 0.00 0.00 0.00 3.91
1922 1978 4.630069 GTCACGGTACACTTGAATTAGCAT 59.370 41.667 0.00 0.00 0.00 3.79
1923 1979 3.991773 GTCACGGTACACTTGAATTAGCA 59.008 43.478 0.00 0.00 0.00 3.49
1940 1996 4.732285 AAAACAGCTCATTAGTGTCACG 57.268 40.909 0.00 0.00 0.00 4.35
1999 2137 6.772716 AGATTCGGTGAATGCCTATAACAAAT 59.227 34.615 0.00 0.00 31.89 2.32
2002 2140 5.056480 CAGATTCGGTGAATGCCTATAACA 58.944 41.667 0.00 0.00 31.89 2.41
2003 2141 5.177696 GTCAGATTCGGTGAATGCCTATAAC 59.822 44.000 0.00 0.00 31.89 1.89
2019 2157 4.744570 TGGAGATACACAACGTCAGATTC 58.255 43.478 0.00 0.00 0.00 2.52
2082 2220 0.885196 GCTTGTACCGGCAATTTGGA 59.115 50.000 0.00 0.00 0.00 3.53
2133 2271 6.611381 CATAATTTTTGCGAGAACTTCCTCA 58.389 36.000 0.00 0.00 32.86 3.86
2151 2289 2.880890 GGAAGACCGCATCTGCATAATT 59.119 45.455 2.72 0.00 42.21 1.40
2155 2293 0.035152 TTGGAAGACCGCATCTGCAT 60.035 50.000 2.72 0.00 42.21 3.96
2315 2453 3.431486 GGGCTGTTGGTTCATTGTTTGAA 60.431 43.478 0.00 0.00 42.09 2.69
2328 2466 1.809567 GCTTCTGTTGGGGCTGTTGG 61.810 60.000 0.00 0.00 0.00 3.77
2369 2507 2.205022 TGTATTTGGCTTCTGCTGCT 57.795 45.000 0.00 0.00 39.59 4.24
2370 2508 2.989166 GTTTGTATTTGGCTTCTGCTGC 59.011 45.455 0.00 0.00 39.59 5.25
2371 2509 3.058293 TCGTTTGTATTTGGCTTCTGCTG 60.058 43.478 0.00 0.00 39.59 4.41
2372 2510 3.058224 GTCGTTTGTATTTGGCTTCTGCT 60.058 43.478 0.00 0.00 39.59 4.24
2373 2511 3.234386 GTCGTTTGTATTTGGCTTCTGC 58.766 45.455 0.00 0.00 38.76 4.26
2374 2512 3.252215 TGGTCGTTTGTATTTGGCTTCTG 59.748 43.478 0.00 0.00 0.00 3.02
2653 2791 4.126437 TCCATATGTCAATTACCGCACTG 58.874 43.478 1.24 0.00 0.00 3.66
2805 2948 7.280876 GCACATCACCTAGAGATGATAAAAACA 59.719 37.037 23.51 0.00 44.34 2.83
2873 3016 8.851145 TGTTCTGTATGGTTTTGCAACTATAAA 58.149 29.630 0.00 0.00 37.90 1.40
2984 3127 7.607607 TGACTATGAAGCACAACATCAAATAGT 59.392 33.333 0.00 0.00 29.06 2.12
3124 3277 2.373169 ACACTGTGTTCTGGGTGATGAT 59.627 45.455 7.80 0.00 34.28 2.45
3125 3278 1.768275 ACACTGTGTTCTGGGTGATGA 59.232 47.619 7.80 0.00 34.28 2.92
3176 3329 7.347252 AGTATCAGAAGACACCTCATACTACA 58.653 38.462 0.00 0.00 0.00 2.74
3420 3573 6.015095 AGGAAAAATAGCAAAGAGGAAACCTG 60.015 38.462 0.00 0.00 31.76 4.00
3428 3581 8.498054 TCATAGTCAGGAAAAATAGCAAAGAG 57.502 34.615 0.00 0.00 0.00 2.85
3536 3690 4.208253 GCACAACCCTTGAAAAACATAACG 59.792 41.667 0.00 0.00 0.00 3.18
3647 3801 5.871834 ACATGTACCTTAAGCCACTGTAAA 58.128 37.500 0.00 0.00 0.00 2.01
3648 3802 5.492855 ACATGTACCTTAAGCCACTGTAA 57.507 39.130 0.00 0.00 0.00 2.41
3739 3893 2.171209 TTGCGCTTGCCAGCTCTAGA 62.171 55.000 9.73 0.00 44.85 2.43
3769 3923 5.304101 TCCACTTGAAATGGTGCAAACTATT 59.696 36.000 0.00 0.00 38.47 1.73
3788 3942 7.828717 CCCAAATTAAGGCAAAATATTTCCACT 59.171 33.333 0.10 0.00 0.00 4.00
3965 4119 3.322230 GCAAAAACACATTTGGCACAG 57.678 42.857 0.00 0.00 45.70 3.66
3980 4134 1.422531 ATCAAACAGCCCAGGCAAAA 58.577 45.000 12.03 0.00 44.88 2.44
4021 4175 5.645067 TGATCTGCAAAAGTCAGGTGAATAG 59.355 40.000 0.00 0.00 32.63 1.73
4024 4178 3.817084 CTGATCTGCAAAAGTCAGGTGAA 59.183 43.478 8.60 0.00 33.72 3.18
4026 4180 3.144506 ACTGATCTGCAAAAGTCAGGTG 58.855 45.455 16.69 0.49 37.89 4.00
4027 4181 3.406764 GACTGATCTGCAAAAGTCAGGT 58.593 45.455 16.69 6.97 39.09 4.00
4028 4182 2.414481 CGACTGATCTGCAAAAGTCAGG 59.586 50.000 16.69 2.25 39.19 3.86
4354 4511 7.221452 GTGCTGAATGAAAATGGTTAAGCTATG 59.779 37.037 6.19 0.00 0.00 2.23
4462 4621 8.768397 TCCTGACACCTTAAATCTTATATGTGT 58.232 33.333 0.00 0.00 0.00 3.72
4839 5012 8.074972 TGATTGCCAAAAATTATTGAAACAAGC 58.925 29.630 0.00 0.00 31.84 4.01
4869 5042 7.038799 ACAGTGAAAAGGAAAGGAATATGCAAT 60.039 33.333 0.00 0.00 0.00 3.56
4878 5051 4.644685 CCTCAAACAGTGAAAAGGAAAGGA 59.355 41.667 0.00 0.00 35.22 3.36
4938 5112 4.415735 GCAACTAGCATAGCCTGAAAAAC 58.584 43.478 0.00 0.00 44.39 2.43
5024 5198 5.412594 GTCCTCAAACAGCACAATATCTTGA 59.587 40.000 0.00 0.00 36.20 3.02
5210 5384 2.988684 AAGCCGCCGCCAAAATCA 60.989 55.556 0.00 0.00 34.57 2.57
5225 5399 3.880846 GGCATGCCGAAGCCGAAG 61.881 66.667 23.48 0.00 41.70 3.79
5234 5408 2.195567 AAATGGATCGGGCATGCCG 61.196 57.895 29.90 23.70 36.85 5.69
5249 5423 4.132441 CCACGCGGCATGCCAAAT 62.132 61.111 34.93 17.17 42.08 2.32
5276 5450 3.220999 GAACCTTGGGCCGCCAAAC 62.221 63.158 12.58 0.00 0.00 2.93
5300 5474 3.787001 GGGCCTCTGGGGAAGTCG 61.787 72.222 0.84 0.00 37.23 4.18
5494 5668 1.215647 CTCCTCTGGTCCCGTTTCG 59.784 63.158 0.00 0.00 0.00 3.46
5530 5704 2.993264 CGTACCTGTCACCCCGGT 60.993 66.667 0.00 0.00 34.86 5.28
5531 5705 2.677524 TCGTACCTGTCACCCCGG 60.678 66.667 0.00 0.00 0.00 5.73
5532 5706 1.676635 TCTCGTACCTGTCACCCCG 60.677 63.158 0.00 0.00 0.00 5.73
5718 5892 4.561731 GAGAAGCACTCGTTCGCT 57.438 55.556 0.00 0.00 41.20 4.93
5730 5904 3.728845 TCAAAGGTTGGTTCTCGAGAAG 58.271 45.455 27.70 12.80 34.27 2.85
5781 5955 0.889186 TCGCTTTTCAGTTCCCAGCC 60.889 55.000 0.00 0.00 0.00 4.85
5786 5975 0.440371 CGAGCTCGCTTTTCAGTTCC 59.560 55.000 25.07 0.00 0.00 3.62
5885 6074 2.674380 GGCAGACCACCCAGCAAG 60.674 66.667 0.00 0.00 35.26 4.01
6035 6226 6.428771 GGCAAGTATGTTCTTAACCAACACTA 59.571 38.462 0.00 0.00 36.59 2.74
6042 6233 3.425758 GCACGGCAAGTATGTTCTTAACC 60.426 47.826 0.00 0.00 0.00 2.85
6054 6245 2.465860 TATAACACAGCACGGCAAGT 57.534 45.000 0.00 0.00 0.00 3.16
6056 6247 4.142026 ACTCTATATAACACAGCACGGCAA 60.142 41.667 0.00 0.00 0.00 4.52
6062 6253 8.745590 TCACAAACTACTCTATATAACACAGCA 58.254 33.333 0.00 0.00 0.00 4.41
6104 6295 8.457585 ACCATATAGCCCAACCTAAACATATA 57.542 34.615 0.00 0.00 0.00 0.86
6106 6297 6.561070 AGACCATATAGCCCAACCTAAACATA 59.439 38.462 0.00 0.00 0.00 2.29
6110 6301 4.724798 ACAGACCATATAGCCCAACCTAAA 59.275 41.667 0.00 0.00 0.00 1.85
6116 6307 3.134623 CAGACACAGACCATATAGCCCAA 59.865 47.826 0.00 0.00 0.00 4.12
6183 6384 8.792830 AGAAAACTAGCATAGCATTAAGAACA 57.207 30.769 0.00 0.00 44.39 3.18
6193 6394 6.713520 CACAGAATGAGAAAACTAGCATAGC 58.286 40.000 0.00 0.00 40.27 2.97
6197 6398 4.214119 GTGCACAGAATGAGAAAACTAGCA 59.786 41.667 13.17 0.00 39.69 3.49
6198 6399 4.214119 TGTGCACAGAATGAGAAAACTAGC 59.786 41.667 17.42 0.00 39.69 3.42
6199 6400 5.929697 TGTGCACAGAATGAGAAAACTAG 57.070 39.130 17.42 0.00 39.69 2.57
6200 6401 6.882610 AATGTGCACAGAATGAGAAAACTA 57.117 33.333 25.84 0.00 39.69 2.24
6219 6420 5.639506 CAGACACGAAAGAAGATGGTAATGT 59.360 40.000 0.00 0.00 0.00 2.71
6264 6465 3.662759 TTTGTATCTCCATTCACCCCC 57.337 47.619 0.00 0.00 0.00 5.40
6265 6466 6.294731 GCATATTTTGTATCTCCATTCACCCC 60.295 42.308 0.00 0.00 0.00 4.95
6267 6468 6.265196 TGGCATATTTTGTATCTCCATTCACC 59.735 38.462 0.00 0.00 0.00 4.02
6270 6471 7.330208 GCAATGGCATATTTTGTATCTCCATTC 59.670 37.037 0.00 0.00 40.04 2.67
6280 6481 2.739287 CGCTGGCAATGGCATATTTTGT 60.739 45.455 10.64 0.00 43.71 2.83
6301 6503 2.646719 CCATGCCATATGTGCGCC 59.353 61.111 4.18 0.00 0.00 6.53
6302 6504 2.049802 GCCATGCCATATGTGCGC 60.050 61.111 0.00 0.00 0.00 6.09
6303 6505 0.388006 CATGCCATGCCATATGTGCG 60.388 55.000 1.24 0.00 0.00 5.34
6304 6506 0.037697 CCATGCCATGCCATATGTGC 60.038 55.000 0.00 5.66 0.00 4.57
6305 6507 0.037697 GCCATGCCATGCCATATGTG 60.038 55.000 0.00 0.00 0.00 3.21
6306 6508 0.470268 TGCCATGCCATGCCATATGT 60.470 50.000 0.00 0.00 0.00 2.29
6307 6509 0.246360 CTGCCATGCCATGCCATATG 59.754 55.000 0.00 0.00 0.00 1.78
6308 6510 0.902984 CCTGCCATGCCATGCCATAT 60.903 55.000 0.00 0.00 0.00 1.78
6309 6511 1.532078 CCTGCCATGCCATGCCATA 60.532 57.895 0.00 0.00 0.00 2.74
6311 6513 3.908904 AACCTGCCATGCCATGCCA 62.909 57.895 0.00 0.00 0.00 4.92
6314 6516 0.104120 CATCAACCTGCCATGCCATG 59.896 55.000 0.00 0.00 0.00 3.66
6330 6535 2.187946 CAGCCCCCGTCAGTCATC 59.812 66.667 0.00 0.00 0.00 2.92
6362 6567 1.332686 CTCCATCGGTGCATTCACATG 59.667 52.381 0.00 0.00 44.87 3.21
6369 6574 1.750399 GCCAACTCCATCGGTGCAT 60.750 57.895 0.00 0.00 0.00 3.96
6383 6588 2.101783 CAGGTCCATTGCTAATGCCAA 58.898 47.619 0.00 0.00 37.57 4.52
6384 6589 1.766494 CAGGTCCATTGCTAATGCCA 58.234 50.000 0.00 0.00 37.57 4.92
6385 6590 0.386838 GCAGGTCCATTGCTAATGCC 59.613 55.000 0.00 2.12 38.51 4.40
6386 6591 1.105457 TGCAGGTCCATTGCTAATGC 58.895 50.000 4.85 0.00 42.02 3.56
6387 6592 2.372264 AGTGCAGGTCCATTGCTAATG 58.628 47.619 4.85 0.00 42.02 1.90
6388 6593 2.756760 CAAGTGCAGGTCCATTGCTAAT 59.243 45.455 4.85 0.00 42.02 1.73
6411 6616 4.202000 CCAGTCAAAGTACATTGCACAACA 60.202 41.667 5.96 0.00 0.00 3.33
6412 6617 4.202010 ACCAGTCAAAGTACATTGCACAAC 60.202 41.667 5.96 0.00 0.00 3.32
6414 6619 3.550820 ACCAGTCAAAGTACATTGCACA 58.449 40.909 5.96 0.00 0.00 4.57
6415 6620 3.058224 GGACCAGTCAAAGTACATTGCAC 60.058 47.826 5.96 5.82 0.00 4.57
6418 6623 5.362556 CTTGGACCAGTCAAAGTACATTG 57.637 43.478 4.44 4.44 36.20 2.82
6479 6688 6.573712 AAAGATAGATTCCCTTCTGCTTCT 57.426 37.500 0.00 0.00 0.00 2.85
6480 6689 6.426633 GCTAAAGATAGATTCCCTTCTGCTTC 59.573 42.308 0.00 0.00 0.00 3.86
6481 6690 6.126652 TGCTAAAGATAGATTCCCTTCTGCTT 60.127 38.462 0.00 0.00 0.00 3.91
6482 6691 5.367937 TGCTAAAGATAGATTCCCTTCTGCT 59.632 40.000 0.00 0.00 0.00 4.24
6483 6692 5.468409 GTGCTAAAGATAGATTCCCTTCTGC 59.532 44.000 0.00 0.00 0.00 4.26
6503 6712 2.990967 CAATGGCCCGGTTGTGCT 60.991 61.111 0.00 0.00 0.00 4.40
6506 6715 1.378514 CTAGCAATGGCCCGGTTGT 60.379 57.895 0.00 0.00 42.56 3.32
6510 6719 1.524621 CTGTCTAGCAATGGCCCGG 60.525 63.158 0.00 0.00 42.56 5.73
6511 6720 4.131376 CTGTCTAGCAATGGCCCG 57.869 61.111 0.00 0.00 42.56 6.13
6553 6762 2.182732 AAATTTGGCCCCCATGCGTG 62.183 55.000 0.00 0.00 31.53 5.34
6554 6763 1.898330 GAAATTTGGCCCCCATGCGT 61.898 55.000 0.00 0.00 31.53 5.24
6560 6769 0.394938 AAACACGAAATTTGGCCCCC 59.605 50.000 0.00 0.00 0.00 5.40
6561 6770 1.870402 CAAAACACGAAATTTGGCCCC 59.130 47.619 0.00 0.00 33.84 5.80
6562 6771 2.542178 GTCAAAACACGAAATTTGGCCC 59.458 45.455 0.00 0.00 35.62 5.80
6563 6772 3.852471 GTCAAAACACGAAATTTGGCC 57.148 42.857 0.00 0.00 35.62 5.36
6564 6773 2.542178 GGGTCAAAACACGAAATTTGGC 59.458 45.455 0.00 0.00 39.72 4.52
6565 6774 4.053469 AGGGTCAAAACACGAAATTTGG 57.947 40.909 0.00 0.00 37.19 3.28
6566 6775 6.415798 AAAAGGGTCAAAACACGAAATTTG 57.584 33.333 0.00 0.00 37.77 2.32
6567 6776 6.128145 CCAAAAAGGGTCAAAACACGAAATTT 60.128 34.615 0.00 0.00 32.44 1.82
6568 6777 5.352846 CCAAAAAGGGTCAAAACACGAAATT 59.647 36.000 0.00 0.00 32.44 1.82
6569 6778 4.873259 CCAAAAAGGGTCAAAACACGAAAT 59.127 37.500 0.00 0.00 32.44 2.17
6570 6779 4.021368 TCCAAAAAGGGTCAAAACACGAAA 60.021 37.500 0.00 0.00 38.24 3.46
6571 6780 3.510360 TCCAAAAAGGGTCAAAACACGAA 59.490 39.130 0.00 0.00 38.24 3.85
6572 6781 3.090037 TCCAAAAAGGGTCAAAACACGA 58.910 40.909 0.00 0.00 38.24 4.35
6573 6782 3.512033 TCCAAAAAGGGTCAAAACACG 57.488 42.857 0.00 0.00 38.24 4.49
6574 6783 6.156748 ACTATCCAAAAAGGGTCAAAACAC 57.843 37.500 0.00 0.00 38.24 3.32
6575 6784 8.485578 AATACTATCCAAAAAGGGTCAAAACA 57.514 30.769 0.00 0.00 38.24 2.83
6576 6785 9.419297 GAAATACTATCCAAAAAGGGTCAAAAC 57.581 33.333 0.00 0.00 38.24 2.43
6577 6786 9.148879 TGAAATACTATCCAAAAAGGGTCAAAA 57.851 29.630 0.00 0.00 38.24 2.44
6578 6787 8.713708 TGAAATACTATCCAAAAAGGGTCAAA 57.286 30.769 0.00 0.00 38.24 2.69
6579 6788 7.396055 CCTGAAATACTATCCAAAAAGGGTCAA 59.604 37.037 0.00 0.00 38.24 3.18
6580 6789 6.889722 CCTGAAATACTATCCAAAAAGGGTCA 59.110 38.462 0.00 0.00 38.24 4.02
6581 6790 7.116736 TCCTGAAATACTATCCAAAAAGGGTC 58.883 38.462 0.00 0.00 38.24 4.46
6582 6791 7.039722 TCCTGAAATACTATCCAAAAAGGGT 57.960 36.000 0.00 0.00 38.24 4.34
6583 6792 7.231519 GGATCCTGAAATACTATCCAAAAAGGG 59.768 40.741 3.84 0.00 36.83 3.95
6584 6793 7.041098 CGGATCCTGAAATACTATCCAAAAAGG 60.041 40.741 10.75 0.00 36.68 3.11
6585 6794 7.715249 TCGGATCCTGAAATACTATCCAAAAAG 59.285 37.037 10.75 0.00 36.68 2.27
6586 6795 7.497909 GTCGGATCCTGAAATACTATCCAAAAA 59.502 37.037 10.75 0.00 36.68 1.94
6587 6796 6.990349 GTCGGATCCTGAAATACTATCCAAAA 59.010 38.462 10.75 0.00 36.68 2.44
6588 6797 6.463897 GGTCGGATCCTGAAATACTATCCAAA 60.464 42.308 10.75 0.00 36.68 3.28
6589 6798 5.011738 GGTCGGATCCTGAAATACTATCCAA 59.988 44.000 10.75 0.00 36.68 3.53
6590 6799 4.527038 GGTCGGATCCTGAAATACTATCCA 59.473 45.833 10.75 0.00 36.68 3.41
6591 6800 4.081586 GGGTCGGATCCTGAAATACTATCC 60.082 50.000 10.75 4.08 34.08 2.59
6592 6801 4.081586 GGGGTCGGATCCTGAAATACTATC 60.082 50.000 10.75 0.00 0.00 2.08
6593 6802 3.838903 GGGGTCGGATCCTGAAATACTAT 59.161 47.826 10.75 0.00 0.00 2.12
6594 6803 3.116862 AGGGGTCGGATCCTGAAATACTA 60.117 47.826 10.75 0.00 31.11 1.82
6595 6804 2.047830 GGGGTCGGATCCTGAAATACT 58.952 52.381 10.75 0.00 0.00 2.12
6596 6805 2.047830 AGGGGTCGGATCCTGAAATAC 58.952 52.381 10.75 0.00 31.11 1.89
6597 6806 2.489528 AGGGGTCGGATCCTGAAATA 57.510 50.000 10.75 0.00 31.11 1.40
6598 6807 3.341833 AGGGGTCGGATCCTGAAAT 57.658 52.632 10.75 0.00 31.11 2.17
6599 6808 4.910613 AGGGGTCGGATCCTGAAA 57.089 55.556 10.75 0.00 31.11 2.69
6603 6812 0.546747 TCAAACAGGGGTCGGATCCT 60.547 55.000 10.75 2.16 0.00 3.24
6604 6813 0.326927 TTCAAACAGGGGTCGGATCC 59.673 55.000 0.00 0.00 0.00 3.36
6605 6814 2.420058 ATTCAAACAGGGGTCGGATC 57.580 50.000 0.00 0.00 0.00 3.36
6606 6815 2.899303 AATTCAAACAGGGGTCGGAT 57.101 45.000 0.00 0.00 0.00 4.18
6607 6816 2.668144 AAATTCAAACAGGGGTCGGA 57.332 45.000 0.00 0.00 0.00 4.55
6608 6817 3.744238 AAAAATTCAAACAGGGGTCGG 57.256 42.857 0.00 0.00 0.00 4.79
6627 6836 5.988287 AGCAAAAGGGTCAAATCTCAAAAA 58.012 33.333 0.00 0.00 0.00 1.94
6628 6837 5.612725 AGCAAAAGGGTCAAATCTCAAAA 57.387 34.783 0.00 0.00 0.00 2.44
6629 6838 5.010617 GGTAGCAAAAGGGTCAAATCTCAAA 59.989 40.000 0.00 0.00 0.00 2.69
6630 6839 4.522789 GGTAGCAAAAGGGTCAAATCTCAA 59.477 41.667 0.00 0.00 0.00 3.02
6631 6840 4.079253 GGTAGCAAAAGGGTCAAATCTCA 58.921 43.478 0.00 0.00 0.00 3.27
6632 6841 3.127030 CGGTAGCAAAAGGGTCAAATCTC 59.873 47.826 0.00 0.00 0.00 2.75
6633 6842 3.081804 CGGTAGCAAAAGGGTCAAATCT 58.918 45.455 0.00 0.00 0.00 2.40
6634 6843 2.415491 GCGGTAGCAAAAGGGTCAAATC 60.415 50.000 0.00 0.00 44.35 2.17
6635 6844 1.544246 GCGGTAGCAAAAGGGTCAAAT 59.456 47.619 0.00 0.00 44.35 2.32
6636 6845 0.955905 GCGGTAGCAAAAGGGTCAAA 59.044 50.000 0.00 0.00 44.35 2.69
6637 6846 2.636299 GCGGTAGCAAAAGGGTCAA 58.364 52.632 0.00 0.00 44.35 3.18
6638 6847 4.390048 GCGGTAGCAAAAGGGTCA 57.610 55.556 0.00 0.00 44.35 4.02
6649 6858 3.854669 CAGAGGCCCTGGCGGTAG 61.855 72.222 12.13 0.00 43.06 3.18
6660 6869 1.619807 TTAACCCTACCGCCAGAGGC 61.620 60.000 0.00 0.00 46.75 4.70
6661 6870 0.906775 TTTAACCCTACCGCCAGAGG 59.093 55.000 0.00 0.00 37.30 3.69
6662 6871 3.802675 GCTATTTAACCCTACCGCCAGAG 60.803 52.174 0.00 0.00 0.00 3.35
6663 6872 2.103601 GCTATTTAACCCTACCGCCAGA 59.896 50.000 0.00 0.00 0.00 3.86
6664 6873 2.490991 GCTATTTAACCCTACCGCCAG 58.509 52.381 0.00 0.00 0.00 4.85
6665 6874 1.141455 GGCTATTTAACCCTACCGCCA 59.859 52.381 0.00 0.00 36.37 5.69
6666 6875 1.419012 AGGCTATTTAACCCTACCGCC 59.581 52.381 0.00 0.00 36.58 6.13
6667 6876 2.924757 AGGCTATTTAACCCTACCGC 57.075 50.000 0.00 0.00 0.00 5.68
6670 6879 3.555795 GGCGGTAGGCTATTTAACCCTAC 60.556 52.174 0.00 7.39 46.60 3.18
6671 6880 2.634453 GGCGGTAGGCTATTTAACCCTA 59.366 50.000 0.00 0.00 42.94 3.53
6672 6881 1.419012 GGCGGTAGGCTATTTAACCCT 59.581 52.381 0.00 0.00 42.94 4.34
6673 6882 1.141455 TGGCGGTAGGCTATTTAACCC 59.859 52.381 0.00 0.00 44.18 4.11
6674 6883 2.216046 GTGGCGGTAGGCTATTTAACC 58.784 52.381 0.00 0.00 44.18 2.85
6675 6884 1.862827 CGTGGCGGTAGGCTATTTAAC 59.137 52.381 0.00 0.00 44.18 2.01
6676 6885 1.202557 CCGTGGCGGTAGGCTATTTAA 60.203 52.381 0.00 0.00 42.73 1.52
6677 6886 0.390124 CCGTGGCGGTAGGCTATTTA 59.610 55.000 0.00 0.00 42.73 1.40
6678 6887 1.145377 CCGTGGCGGTAGGCTATTT 59.855 57.895 0.00 0.00 42.73 1.40
6679 6888 2.819550 CCGTGGCGGTAGGCTATT 59.180 61.111 0.00 0.00 42.73 1.73
6696 6905 4.109675 ACACCTACCGCCATGGGC 62.110 66.667 15.13 4.92 46.75 5.36
6697 6906 2.124736 CACACCTACCGCCATGGG 60.125 66.667 15.13 3.37 44.64 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.