Multiple sequence alignment - TraesCS7B01G362900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G362900 chr7B 100.000 7341 0 0 1 7341 624939118 624946458 0.000000e+00 13557.0
1 TraesCS7B01G362900 chr7B 98.462 195 1 2 5604 5798 468112272 468112464 7.050000e-90 342.0
2 TraesCS7B01G362900 chr7B 98.958 192 1 1 5608 5798 619432382 619432573 7.050000e-90 342.0
3 TraesCS7B01G362900 chr7B 98.953 191 0 1 5610 5800 588063931 588063743 2.540000e-89 340.0
4 TraesCS7B01G362900 chr7B 97.938 194 2 2 5618 5811 657551175 657551366 1.180000e-87 335.0
5 TraesCS7B01G362900 chr7B 87.288 118 9 4 3447 3558 436210790 436210907 5.980000e-26 130.0
6 TraesCS7B01G362900 chr7B 78.037 214 40 7 410 621 193712828 193713036 2.150000e-25 128.0
7 TraesCS7B01G362900 chr7D 92.408 4597 182 53 719 5275 568748899 568753368 0.000000e+00 6401.0
8 TraesCS7B01G362900 chr7D 93.197 1764 71 20 5619 7341 568753610 568755365 0.000000e+00 2547.0
9 TraesCS7B01G362900 chr7D 95.930 344 11 3 5274 5615 568753472 568753814 8.320000e-154 555.0
10 TraesCS7B01G362900 chr7D 77.551 196 37 7 431 622 605900312 605900120 2.170000e-20 111.0
11 TraesCS7B01G362900 chr7A 96.420 2067 57 10 3553 5615 657515765 657517818 0.000000e+00 3391.0
12 TraesCS7B01G362900 chr7A 92.126 2197 108 28 1273 3451 657513623 657515772 0.000000e+00 3038.0
13 TraesCS7B01G362900 chr7A 91.413 1444 57 26 5929 7341 657517897 657519304 0.000000e+00 1917.0
14 TraesCS7B01G362900 chr7A 87.000 500 26 10 720 1204 657513118 657513593 1.810000e-145 527.0
15 TraesCS7B01G362900 chr7A 88.070 285 22 2 5619 5894 657517614 657517895 1.970000e-85 327.0
16 TraesCS7B01G362900 chr7A 89.130 184 16 2 5413 5592 83785013 83784830 7.410000e-55 226.0
17 TraesCS7B01G362900 chr7A 78.341 217 40 7 409 622 697127224 697127012 4.620000e-27 134.0
18 TraesCS7B01G362900 chr3D 85.934 391 34 8 5411 5798 422517614 422517986 1.480000e-106 398.0
19 TraesCS7B01G362900 chr3D 81.481 270 47 3 355 622 580128200 580128468 1.240000e-52 219.0
20 TraesCS7B01G362900 chr3D 86.066 122 11 2 3447 3562 2403162 2403041 7.730000e-25 126.0
21 TraesCS7B01G362900 chr5A 99.468 188 0 1 5611 5798 336459047 336458861 2.540000e-89 340.0
22 TraesCS7B01G362900 chr5A 95.735 211 5 4 5616 5822 505019433 505019223 3.280000e-88 337.0
23 TraesCS7B01G362900 chr2B 97.970 197 3 1 5618 5814 522079157 522078962 2.540000e-89 340.0
24 TraesCS7B01G362900 chr2B 97.959 196 1 3 5618 5812 96599094 96598901 3.280000e-88 337.0
25 TraesCS7B01G362900 chr2B 86.667 120 10 2 3447 3560 508240119 508240238 2.150000e-25 128.0
26 TraesCS7B01G362900 chr1B 98.454 194 1 2 5614 5806 660914432 660914624 2.540000e-89 340.0
27 TraesCS7B01G362900 chr1B 78.605 215 42 4 409 622 573580194 573580405 9.930000e-29 139.0
28 TraesCS7B01G362900 chr6A 76.265 573 110 16 75 624 554781655 554782224 1.560000e-71 281.0
29 TraesCS7B01G362900 chr4A 75.965 570 110 17 75 622 153257697 153258261 1.210000e-67 268.0
30 TraesCS7B01G362900 chr4D 90.761 184 14 1 5411 5591 482703445 482703628 7.360000e-60 243.0
31 TraesCS7B01G362900 chr4D 81.287 171 27 5 409 577 28886435 28886268 4.620000e-27 134.0
32 TraesCS7B01G362900 chr4D 86.508 126 11 2 3442 3561 428946500 428946375 4.620000e-27 134.0
33 TraesCS7B01G362900 chr4D 86.325 117 10 1 3447 3557 285317752 285317868 1.000000e-23 122.0
34 TraesCS7B01G362900 chr3A 89.175 194 17 2 5402 5591 353624406 353624599 9.520000e-59 239.0
35 TraesCS7B01G362900 chr5B 88.482 191 18 2 5402 5588 574956635 574956445 2.060000e-55 228.0
36 TraesCS7B01G362900 chr5B 81.132 159 14 10 3427 3575 477558189 477558037 6.020000e-21 113.0
37 TraesCS7B01G362900 chr5D 87.958 191 19 3 5402 5588 468170659 468170469 9.590000e-54 222.0
38 TraesCS7B01G362900 chr5D 73.898 567 125 18 77 622 328440473 328439909 9.650000e-49 206.0
39 TraesCS7B01G362900 chr5D 82.036 167 29 1 456 622 459220359 459220194 2.760000e-29 141.0
40 TraesCS7B01G362900 chr5D 84.375 128 13 3 3452 3573 134475509 134475635 1.290000e-22 119.0
41 TraesCS7B01G362900 chr1A 88.649 185 18 1 5411 5592 350014489 350014305 9.590000e-54 222.0
42 TraesCS7B01G362900 chr1A 85.593 118 11 2 3447 3558 373599006 373598889 1.290000e-22 119.0
43 TraesCS7B01G362900 chr3B 76.632 291 46 15 64 342 555309812 555310092 2.760000e-29 141.0
44 TraesCS7B01G362900 chr3B 86.885 122 10 2 3447 3562 556520782 556520661 1.660000e-26 132.0
45 TraesCS7B01G362900 chr2D 88.983 118 7 2 3446 3557 618286184 618286067 2.760000e-29 141.0
46 TraesCS7B01G362900 chr2D 86.777 121 10 2 3447 3561 95519658 95519538 5.980000e-26 130.0
47 TraesCS7B01G362900 chr2D 77.660 188 39 3 436 622 638817702 638817887 2.170000e-20 111.0
48 TraesCS7B01G362900 chr6D 93.478 92 6 0 3447 3538 174529477 174529568 3.570000e-28 137.0
49 TraesCS7B01G362900 chr6D 93.023 86 6 0 3447 3532 94622296 94622211 7.730000e-25 126.0
50 TraesCS7B01G362900 chr6D 93.023 86 6 0 3447 3532 94622792 94622707 7.730000e-25 126.0
51 TraesCS7B01G362900 chr6D 93.023 86 6 0 3447 3532 94662518 94662433 7.730000e-25 126.0
52 TraesCS7B01G362900 chr6D 91.304 92 8 0 3447 3538 136474598 136474689 7.730000e-25 126.0
53 TraesCS7B01G362900 chr6D 93.827 81 5 0 3452 3532 90111999 90112079 1.000000e-23 122.0
54 TraesCS7B01G362900 chr6D 86.726 113 8 3 3452 3557 456555441 456555553 1.290000e-22 119.0
55 TraesCS7B01G362900 chr6B 87.302 126 8 4 3442 3561 638920888 638921011 3.570000e-28 137.0
56 TraesCS7B01G362900 chr6B 86.179 123 10 3 3441 3557 692579450 692579571 7.730000e-25 126.0
57 TraesCS7B01G362900 chrUn 92.391 92 7 0 3447 3538 51032610 51032701 1.660000e-26 132.0
58 TraesCS7B01G362900 chrUn 87.179 117 9 2 3447 3557 455532624 455532508 2.150000e-25 128.0
59 TraesCS7B01G362900 chrUn 91.463 82 6 1 3453 3534 428863822 428863742 2.170000e-20 111.0
60 TraesCS7B01G362900 chrUn 91.463 82 6 1 3453 3534 433527467 433527387 2.170000e-20 111.0
61 TraesCS7B01G362900 chrUn 87.805 82 10 0 3453 3534 9171057 9171138 6.060000e-16 97.1
62 TraesCS7B01G362900 chrUn 88.608 79 9 0 3446 3524 37054869 37054947 6.060000e-16 97.1
63 TraesCS7B01G362900 chrUn 87.805 82 10 0 3453 3534 205600693 205600774 6.060000e-16 97.1
64 TraesCS7B01G362900 chrUn 88.462 78 9 0 3447 3524 77508706 77508783 2.180000e-15 95.3
65 TraesCS7B01G362900 chrUn 86.047 86 12 0 3447 3532 51033256 51033341 7.840000e-15 93.5
66 TraesCS7B01G362900 chr1D 91.304 92 8 0 3447 3538 22440931 22441022 7.730000e-25 126.0
67 TraesCS7B01G362900 chr1D 80.137 146 24 4 477 622 95933948 95933808 3.620000e-18 104.0
68 TraesCS7B01G362900 chr4B 90.217 92 9 0 3447 3538 449133038 449133129 3.600000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G362900 chr7B 624939118 624946458 7340 False 13557.000000 13557 100.0000 1 7341 1 chr7B.!!$F5 7340
1 TraesCS7B01G362900 chr7D 568748899 568755365 6466 False 3167.666667 6401 93.8450 719 7341 3 chr7D.!!$F1 6622
2 TraesCS7B01G362900 chr7A 657513118 657519304 6186 False 1840.000000 3391 91.0058 720 7341 5 chr7A.!!$F1 6621
3 TraesCS7B01G362900 chr6A 554781655 554782224 569 False 281.000000 281 76.2650 75 624 1 chr6A.!!$F1 549
4 TraesCS7B01G362900 chr4A 153257697 153258261 564 False 268.000000 268 75.9650 75 622 1 chr4A.!!$F1 547
5 TraesCS7B01G362900 chr5D 328439909 328440473 564 True 206.000000 206 73.8980 77 622 1 chr5D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 451 0.028902 GCAAGGGTTCAACGACACAC 59.971 55.000 0.00 0.00 0.00 3.82 F
1192 1234 0.547553 AGTCTCCCGTCCTAGTCCTC 59.452 60.000 0.00 0.00 0.00 3.71 F
1426 1468 0.174845 CATTAACTCGACCCTGCCGA 59.825 55.000 0.00 0.00 34.61 5.54 F
2077 2132 0.593128 GATTGTGAAGCGTTGCCACT 59.407 50.000 6.61 0.00 0.00 4.00 F
3228 3291 0.250467 GTATGGCGCCTGACCATCAT 60.250 55.000 29.70 12.57 44.85 2.45 F
3552 3621 0.966875 TTCGAATTCCGGACGGAGGA 60.967 55.000 13.64 7.51 46.06 3.71 F
3612 3681 1.601903 TCCAGTAAAAAGTGCTGCACG 59.398 47.619 25.39 9.74 38.56 5.34 F
5178 5251 2.238646 ACTGTCTTGAACTTGTCACCCA 59.761 45.455 0.00 0.00 35.39 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1451 0.174845 CATCGGCAGGGTCGAGTTAA 59.825 55.000 0.00 0.0 44.58 2.01 R
2736 2798 0.033796 CCTCAGCAACCACCATGGAT 60.034 55.000 21.47 0.0 40.96 3.41 R
3215 3278 0.250038 CTGGGTATGATGGTCAGGCG 60.250 60.000 0.00 0.0 0.00 5.52 R
3538 3601 1.109609 GTACTTCCTCCGTCCGGAAT 58.890 55.000 5.23 0.0 44.66 3.01 R
5120 5193 1.264020 GCAACATGAGCTTTCGTGTCA 59.736 47.619 0.00 0.0 38.75 3.58 R
5463 5643 3.584848 AGAGGCTGTTTCAAGGACTACAT 59.415 43.478 0.00 0.0 0.00 2.29 R
5627 5807 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.0 0.00 3.61 R
6950 7166 0.815734 GCAGTGGCAGAAGCATGATT 59.184 50.000 0.00 0.0 44.61 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.584063 ACAATTTATTTATTAACGACCCAGGT 57.416 30.769 0.00 0.00 0.00 4.00
32 33 9.027202 ACAATTTATTTATTAACGACCCAGGTT 57.973 29.630 0.00 0.00 0.00 3.50
33 34 9.863845 CAATTTATTTATTAACGACCCAGGTTT 57.136 29.630 0.00 0.00 0.00 3.27
34 35 9.863845 AATTTATTTATTAACGACCCAGGTTTG 57.136 29.630 0.00 0.00 0.00 2.93
35 36 8.632906 TTTATTTATTAACGACCCAGGTTTGA 57.367 30.769 0.00 0.00 0.00 2.69
36 37 8.632906 TTATTTATTAACGACCCAGGTTTGAA 57.367 30.769 0.00 0.00 0.00 2.69
37 38 6.956202 TTTATTAACGACCCAGGTTTGAAA 57.044 33.333 0.00 0.00 0.00 2.69
38 39 6.956202 TTATTAACGACCCAGGTTTGAAAA 57.044 33.333 0.00 0.00 0.00 2.29
39 40 5.855740 ATTAACGACCCAGGTTTGAAAAA 57.144 34.783 0.00 0.00 0.00 1.94
60 61 7.497925 AAAAACTTTAGATGCGACTTTCTCT 57.502 32.000 0.00 0.00 0.00 3.10
61 62 7.497925 AAAACTTTAGATGCGACTTTCTCTT 57.502 32.000 0.00 0.00 0.00 2.85
62 63 6.473397 AACTTTAGATGCGACTTTCTCTTG 57.527 37.500 0.00 0.00 0.00 3.02
63 64 5.542779 ACTTTAGATGCGACTTTCTCTTGT 58.457 37.500 0.00 0.00 0.00 3.16
64 65 5.992217 ACTTTAGATGCGACTTTCTCTTGTT 59.008 36.000 0.00 0.00 0.00 2.83
65 66 6.483640 ACTTTAGATGCGACTTTCTCTTGTTT 59.516 34.615 0.00 0.00 0.00 2.83
66 67 6.861065 TTAGATGCGACTTTCTCTTGTTTT 57.139 33.333 0.00 0.00 0.00 2.43
67 68 5.349824 AGATGCGACTTTCTCTTGTTTTC 57.650 39.130 0.00 0.00 0.00 2.29
68 69 3.963383 TGCGACTTTCTCTTGTTTTCC 57.037 42.857 0.00 0.00 0.00 3.13
69 70 3.541632 TGCGACTTTCTCTTGTTTTCCT 58.458 40.909 0.00 0.00 0.00 3.36
70 71 3.560068 TGCGACTTTCTCTTGTTTTCCTC 59.440 43.478 0.00 0.00 0.00 3.71
71 72 3.363084 GCGACTTTCTCTTGTTTTCCTCG 60.363 47.826 0.00 0.00 0.00 4.63
72 73 3.802685 CGACTTTCTCTTGTTTTCCTCGT 59.197 43.478 0.00 0.00 0.00 4.18
73 74 4.318121 CGACTTTCTCTTGTTTTCCTCGTG 60.318 45.833 0.00 0.00 0.00 4.35
110 112 1.003233 GCACACTCTCCCTCCCAAC 60.003 63.158 0.00 0.00 0.00 3.77
114 116 1.352083 CACTCTCCCTCCCAACTTCA 58.648 55.000 0.00 0.00 0.00 3.02
115 117 1.002544 CACTCTCCCTCCCAACTTCAC 59.997 57.143 0.00 0.00 0.00 3.18
116 118 1.132689 ACTCTCCCTCCCAACTTCACT 60.133 52.381 0.00 0.00 0.00 3.41
117 119 2.111972 ACTCTCCCTCCCAACTTCACTA 59.888 50.000 0.00 0.00 0.00 2.74
129 132 0.248539 CTTCACTAGCGAGCCCGTAC 60.249 60.000 0.00 0.00 38.24 3.67
134 137 0.384309 CTAGCGAGCCCGTACATTCA 59.616 55.000 0.00 0.00 38.24 2.57
142 145 1.268992 CCCGTACATTCACCTCCCCA 61.269 60.000 0.00 0.00 0.00 4.96
162 165 4.489771 GCCTGCCGCTATGGTGGT 62.490 66.667 10.66 0.00 44.44 4.16
164 167 2.584064 CTGCCGCTATGGTGGTCA 59.416 61.111 10.66 7.89 44.44 4.02
170 173 1.299648 GCTATGGTGGTCAGTGGCA 59.700 57.895 0.00 0.00 0.00 4.92
181 185 0.846427 TCAGTGGCAGGAGGGGAATT 60.846 55.000 0.00 0.00 0.00 2.17
199 203 4.697756 CCGGTGCCTTCGCTCCAA 62.698 66.667 0.00 0.00 46.97 3.53
217 221 7.123247 TCGCTCCAATTAGTAGTTTAGGTTAGT 59.877 37.037 0.00 0.00 0.00 2.24
240 245 0.966179 TTCTAGTCCTCGCAGTTGCA 59.034 50.000 4.84 0.00 42.21 4.08
241 246 0.966179 TCTAGTCCTCGCAGTTGCAA 59.034 50.000 0.00 0.00 42.21 4.08
243 248 0.391228 TAGTCCTCGCAGTTGCAACA 59.609 50.000 30.11 9.68 42.21 3.33
246 251 0.463654 TCCTCGCAGTTGCAACACTT 60.464 50.000 30.11 8.22 42.21 3.16
248 253 0.378257 CTCGCAGTTGCAACACTTGT 59.622 50.000 30.11 7.43 42.21 3.16
253 258 1.138671 GTTGCAACACTTGTGCGGT 59.861 52.632 24.52 0.00 0.00 5.68
257 262 1.065600 CAACACTTGTGCGGTTGGG 59.934 57.895 0.10 0.00 38.52 4.12
258 263 1.379309 AACACTTGTGCGGTTGGGT 60.379 52.632 0.10 0.00 0.00 4.51
269 274 1.896660 GGTTGGGTGCGCTTCTTCA 60.897 57.895 9.73 2.73 0.00 3.02
287 298 0.527565 CATTGTCTTCCGGGCTTTGG 59.472 55.000 0.00 0.00 0.00 3.28
293 304 1.842381 CTTCCGGGCTTTGGTCCTCT 61.842 60.000 0.00 0.00 34.49 3.69
298 309 0.036306 GGGCTTTGGTCCTCTTCGAA 59.964 55.000 0.00 0.00 33.70 3.71
301 312 2.820197 GGCTTTGGTCCTCTTCGAATTT 59.180 45.455 0.00 0.00 0.00 1.82
310 321 5.395324 GGTCCTCTTCGAATTTGTCCATCTA 60.395 44.000 0.00 0.00 0.00 1.98
359 382 2.211250 TCTAGCCGTGTCCTGTTAGT 57.789 50.000 0.00 0.00 0.00 2.24
388 413 3.492313 GTCATGTGGCGAGATTTGTTTC 58.508 45.455 0.00 0.00 0.00 2.78
390 415 1.243902 TGTGGCGAGATTTGTTTCCC 58.756 50.000 0.00 0.00 0.00 3.97
391 416 1.243902 GTGGCGAGATTTGTTTCCCA 58.756 50.000 0.00 0.00 0.00 4.37
393 418 1.073125 TGGCGAGATTTGTTTCCCAGA 59.927 47.619 0.00 0.00 0.00 3.86
403 428 6.950619 AGATTTGTTTCCCAGAGCTTAAGATT 59.049 34.615 6.67 0.00 0.00 2.40
406 431 7.448748 TTGTTTCCCAGAGCTTAAGATTTAC 57.551 36.000 6.67 0.00 0.00 2.01
423 448 0.104487 TACGCAAGGGTTCAACGACA 59.896 50.000 0.00 0.00 46.39 4.35
424 449 1.278637 CGCAAGGGTTCAACGACAC 59.721 57.895 0.00 0.00 0.00 3.67
425 450 1.433053 CGCAAGGGTTCAACGACACA 61.433 55.000 0.00 0.00 0.00 3.72
426 451 0.028902 GCAAGGGTTCAACGACACAC 59.971 55.000 0.00 0.00 0.00 3.82
427 452 1.374560 CAAGGGTTCAACGACACACA 58.625 50.000 0.00 0.00 0.00 3.72
441 466 2.425592 CACAACTGTGGCTCCCGA 59.574 61.111 1.70 0.00 42.10 5.14
459 484 1.383248 AGCGCTGATCCTTAGGGGT 60.383 57.895 10.39 0.00 36.25 4.95
461 486 0.977395 GCGCTGATCCTTAGGGGTAT 59.023 55.000 0.00 0.00 36.25 2.73
478 503 3.326747 GGTATGTGCACGAAGACTTTCT 58.673 45.455 13.13 0.00 0.00 2.52
481 506 1.134521 TGTGCACGAAGACTTTCTGGT 60.135 47.619 13.13 0.00 0.00 4.00
489 514 4.058124 CGAAGACTTTCTGGTTGTCATCA 58.942 43.478 0.00 0.00 30.71 3.07
490 515 4.151335 CGAAGACTTTCTGGTTGTCATCAG 59.849 45.833 0.00 0.00 30.71 2.90
507 532 0.886490 CAGCAAGGTCAAGCCGACTT 60.886 55.000 4.07 0.00 44.70 3.01
564 589 1.090052 GTTCTGATGGCGGTAGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
577 602 4.612412 GTGGCCGTTCGGTGGTCA 62.612 66.667 12.81 4.34 39.19 4.02
578 603 4.612412 TGGCCGTTCGGTGGTCAC 62.612 66.667 12.81 0.00 35.84 3.67
580 605 2.589442 GCCGTTCGGTGGTCACAA 60.589 61.111 12.81 0.00 0.00 3.33
584 609 1.335496 CCGTTCGGTGGTCACAAAATT 59.665 47.619 2.82 0.00 0.00 1.82
660 685 9.743057 TTATGTTTGAGATGTTTTGTACCTTTG 57.257 29.630 0.00 0.00 0.00 2.77
661 686 6.568869 TGTTTGAGATGTTTTGTACCTTTGG 58.431 36.000 0.00 0.00 0.00 3.28
662 687 6.153680 TGTTTGAGATGTTTTGTACCTTTGGT 59.846 34.615 0.00 0.00 40.16 3.67
663 688 5.766150 TGAGATGTTTTGTACCTTTGGTG 57.234 39.130 0.00 0.00 36.19 4.17
664 689 5.441500 TGAGATGTTTTGTACCTTTGGTGA 58.558 37.500 0.00 0.00 36.19 4.02
665 690 5.888724 TGAGATGTTTTGTACCTTTGGTGAA 59.111 36.000 0.00 0.00 36.19 3.18
666 691 6.549364 TGAGATGTTTTGTACCTTTGGTGAAT 59.451 34.615 0.00 0.00 36.19 2.57
667 692 7.069331 TGAGATGTTTTGTACCTTTGGTGAATT 59.931 33.333 0.00 0.00 36.19 2.17
668 693 7.791029 AGATGTTTTGTACCTTTGGTGAATTT 58.209 30.769 0.00 0.00 36.19 1.82
669 694 8.264347 AGATGTTTTGTACCTTTGGTGAATTTT 58.736 29.630 0.00 0.00 36.19 1.82
670 695 8.800370 ATGTTTTGTACCTTTGGTGAATTTTT 57.200 26.923 0.00 0.00 36.19 1.94
671 696 9.892130 ATGTTTTGTACCTTTGGTGAATTTTTA 57.108 25.926 0.00 0.00 36.19 1.52
672 697 9.892130 TGTTTTGTACCTTTGGTGAATTTTTAT 57.108 25.926 0.00 0.00 36.19 1.40
680 705 9.758651 ACCTTTGGTGAATTTTTATAACAGTTC 57.241 29.630 0.00 1.11 32.98 3.01
681 706 9.981114 CCTTTGGTGAATTTTTATAACAGTTCT 57.019 29.630 7.96 0.00 0.00 3.01
710 735 6.934048 TTTTTAAAAAGCTTTGGATGTGGG 57.066 33.333 13.54 0.00 0.00 4.61
711 736 5.878406 TTTAAAAAGCTTTGGATGTGGGA 57.122 34.783 13.54 0.00 0.00 4.37
712 737 5.878406 TTAAAAAGCTTTGGATGTGGGAA 57.122 34.783 13.54 0.00 0.00 3.97
713 738 3.751479 AAAAGCTTTGGATGTGGGAAC 57.249 42.857 13.54 0.00 0.00 3.62
733 758 5.394115 GGAACCAAGACTTTGAAGCTGAAAA 60.394 40.000 0.00 0.00 36.36 2.29
734 759 4.998788 ACCAAGACTTTGAAGCTGAAAAC 58.001 39.130 0.00 0.00 36.36 2.43
735 760 4.706962 ACCAAGACTTTGAAGCTGAAAACT 59.293 37.500 0.00 0.00 36.36 2.66
736 761 5.885912 ACCAAGACTTTGAAGCTGAAAACTA 59.114 36.000 0.00 0.00 36.36 2.24
738 763 6.038714 CCAAGACTTTGAAGCTGAAAACTAGT 59.961 38.462 0.00 0.00 36.36 2.57
739 764 6.610741 AGACTTTGAAGCTGAAAACTAGTG 57.389 37.500 0.00 0.00 0.00 2.74
873 904 2.612251 CCCCCACCCCAACAAACT 59.388 61.111 0.00 0.00 0.00 2.66
907 938 4.162690 CCTAGCCGCCGCCTTCTT 62.163 66.667 0.00 0.00 34.57 2.52
908 939 2.125106 CTAGCCGCCGCCTTCTTT 60.125 61.111 0.00 0.00 34.57 2.52
909 940 2.125269 TAGCCGCCGCCTTCTTTC 60.125 61.111 0.00 0.00 34.57 2.62
910 941 3.675619 TAGCCGCCGCCTTCTTTCC 62.676 63.158 0.00 0.00 34.57 3.13
912 943 4.410400 CCGCCGCCTTCTTTCCCT 62.410 66.667 0.00 0.00 0.00 4.20
913 944 2.820037 CGCCGCCTTCTTTCCCTC 60.820 66.667 0.00 0.00 0.00 4.30
914 945 2.438614 GCCGCCTTCTTTCCCTCC 60.439 66.667 0.00 0.00 0.00 4.30
915 946 2.972819 GCCGCCTTCTTTCCCTCCT 61.973 63.158 0.00 0.00 0.00 3.69
916 947 1.222113 CCGCCTTCTTTCCCTCCTC 59.778 63.158 0.00 0.00 0.00 3.71
917 948 1.153549 CGCCTTCTTTCCCTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
918 949 1.222113 GCCTTCTTTCCCTCCTCGG 59.778 63.158 0.00 0.00 0.00 4.63
919 950 1.222113 CCTTCTTTCCCTCCTCGGC 59.778 63.158 0.00 0.00 0.00 5.54
920 951 1.222113 CTTCTTTCCCTCCTCGGCC 59.778 63.158 0.00 0.00 0.00 6.13
921 952 2.258748 CTTCTTTCCCTCCTCGGCCC 62.259 65.000 0.00 0.00 0.00 5.80
922 953 3.798511 CTTTCCCTCCTCGGCCCC 61.799 72.222 0.00 0.00 0.00 5.80
923 954 4.348495 TTTCCCTCCTCGGCCCCT 62.348 66.667 0.00 0.00 0.00 4.79
924 955 4.798682 TTCCCTCCTCGGCCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
970 1001 1.961277 CAAGTTCAACTCCGCCGCT 60.961 57.895 0.00 0.00 0.00 5.52
1163 1205 2.613482 GGAACAAGGTCCCCCTCCC 61.613 68.421 0.00 0.00 41.56 4.30
1174 1216 4.626081 CCCTCCCCCGCGCATTAG 62.626 72.222 8.75 0.00 0.00 1.73
1175 1217 3.861797 CCTCCCCCGCGCATTAGT 61.862 66.667 8.75 0.00 0.00 2.24
1192 1234 0.547553 AGTCTCCCGTCCTAGTCCTC 59.452 60.000 0.00 0.00 0.00 3.71
1194 1236 2.124403 TCCCGTCCTAGTCCTCGC 60.124 66.667 0.00 0.00 0.00 5.03
1235 1277 4.388499 TCCCTGCTTCGCGGTTCC 62.388 66.667 6.13 0.00 32.22 3.62
1237 1279 4.394712 CCTGCTTCGCGGTTCCCT 62.395 66.667 6.13 0.00 32.22 4.20
1239 1281 4.697756 TGCTTCGCGGTTCCCTGG 62.698 66.667 6.13 0.00 0.00 4.45
1369 1411 2.821366 CGCTGCGGCTGAATCCTT 60.821 61.111 17.03 0.00 36.09 3.36
1372 1414 1.138247 CTGCGGCTGAATCCTTTGC 59.862 57.895 0.00 0.00 0.00 3.68
1391 1433 3.241059 GTCGTGCTCGTAGCTGCG 61.241 66.667 18.85 18.85 42.97 5.18
1393 1435 2.278206 CGTGCTCGTAGCTGCGAT 60.278 61.111 27.03 0.00 42.97 4.58
1397 1439 1.517257 GCTCGTAGCTGCGATGTGT 60.517 57.895 27.03 0.00 40.29 3.72
1413 1455 2.276430 GTCGGCGTGCGCATTAAC 60.276 61.111 15.91 4.40 44.11 2.01
1415 1457 2.021380 CGGCGTGCGCATTAACTC 59.979 61.111 15.91 0.00 44.11 3.01
1417 1459 2.449525 GGCGTGCGCATTAACTCGA 61.450 57.895 15.91 0.00 44.11 4.04
1420 1462 1.713830 GTGCGCATTAACTCGACCC 59.286 57.895 15.91 0.00 0.00 4.46
1424 1466 1.429148 CGCATTAACTCGACCCTGCC 61.429 60.000 0.00 0.00 0.00 4.85
1426 1468 0.174845 CATTAACTCGACCCTGCCGA 59.825 55.000 0.00 0.00 34.61 5.54
1440 1482 3.885297 CCCTGCCGATGATTTTGAGTTAT 59.115 43.478 0.00 0.00 0.00 1.89
1447 1489 7.757624 TGCCGATGATTTTGAGTTATTTTTACC 59.242 33.333 0.00 0.00 0.00 2.85
1468 1510 8.693542 TTACCGATTTTAGTAAGTCACTTAGC 57.306 34.615 0.00 0.00 38.80 3.09
1528 1573 1.868519 GCGAGCAGGAATAGTAACCGG 60.869 57.143 0.00 0.00 0.00 5.28
1532 1577 2.431057 AGCAGGAATAGTAACCGGTCAG 59.569 50.000 8.04 0.00 0.00 3.51
1533 1578 2.822764 CAGGAATAGTAACCGGTCAGC 58.177 52.381 8.04 0.40 0.00 4.26
1536 1581 4.098960 CAGGAATAGTAACCGGTCAGCTTA 59.901 45.833 8.04 0.00 0.00 3.09
1537 1582 4.341520 AGGAATAGTAACCGGTCAGCTTAG 59.658 45.833 8.04 0.00 0.00 2.18
1541 1586 2.631545 AGTAACCGGTCAGCTTAGTGTT 59.368 45.455 8.04 0.00 0.00 3.32
1546 1591 3.070590 ACCGGTCAGCTTAGTGTTACTTT 59.929 43.478 0.00 0.00 0.00 2.66
1548 1593 3.678548 CGGTCAGCTTAGTGTTACTTTCC 59.321 47.826 0.00 0.00 0.00 3.13
1549 1594 3.678548 GGTCAGCTTAGTGTTACTTTCCG 59.321 47.826 0.00 0.00 0.00 4.30
1552 1597 5.638234 GTCAGCTTAGTGTTACTTTCCGATT 59.362 40.000 0.00 0.00 0.00 3.34
1553 1598 5.867716 TCAGCTTAGTGTTACTTTCCGATTC 59.132 40.000 0.00 0.00 0.00 2.52
1554 1599 5.869888 CAGCTTAGTGTTACTTTCCGATTCT 59.130 40.000 0.00 0.00 0.00 2.40
1555 1600 7.033791 CAGCTTAGTGTTACTTTCCGATTCTA 58.966 38.462 0.00 0.00 0.00 2.10
1556 1601 7.707035 CAGCTTAGTGTTACTTTCCGATTCTAT 59.293 37.037 0.00 0.00 0.00 1.98
1557 1602 8.258708 AGCTTAGTGTTACTTTCCGATTCTATT 58.741 33.333 0.00 0.00 0.00 1.73
1563 1608 8.674607 GTGTTACTTTCCGATTCTATTGGATTT 58.325 33.333 0.00 0.00 42.38 2.17
1568 1613 2.226437 CCGATTCTATTGGATTTGCCGG 59.774 50.000 0.00 0.00 40.66 6.13
1576 1621 0.693622 TGGATTTGCCGGTTAGGTGA 59.306 50.000 1.90 0.00 43.70 4.02
1578 1623 1.612199 GGATTTGCCGGTTAGGTGACA 60.612 52.381 1.90 0.00 43.70 3.58
1579 1624 1.737793 GATTTGCCGGTTAGGTGACAG 59.262 52.381 1.90 0.00 43.70 3.51
1586 1631 1.589803 GGTTAGGTGACAGCGTGTTT 58.410 50.000 0.00 0.00 0.00 2.83
1732 1777 1.630126 AATGCCAGACTCGCCAGGAT 61.630 55.000 0.00 0.00 0.00 3.24
1747 1792 2.593956 GGATGGGGTATCGAGGGCC 61.594 68.421 0.00 0.00 36.62 5.80
1770 1815 5.708697 CCGAAGTAGGTGAACCCTTTATTTT 59.291 40.000 0.00 0.00 42.73 1.82
1839 1884 6.826231 TCTTGTCATTGTACCTCTTTTGTCAA 59.174 34.615 0.00 0.00 0.00 3.18
1876 1921 8.055790 AGAGCCCAGCTTAATAAAGAAACTAAT 58.944 33.333 0.00 0.00 39.88 1.73
1894 1939 6.683974 ACTAATTGTGCATCACTATTCACC 57.316 37.500 9.23 0.00 39.57 4.02
1946 2000 4.135306 CAGAGATGCCAGCTGAATACATT 58.865 43.478 17.39 4.73 0.00 2.71
1947 2001 5.163269 ACAGAGATGCCAGCTGAATACATTA 60.163 40.000 17.39 0.00 33.94 1.90
1948 2002 5.938710 CAGAGATGCCAGCTGAATACATTAT 59.061 40.000 17.39 6.37 0.00 1.28
1949 2003 6.430308 CAGAGATGCCAGCTGAATACATTATT 59.570 38.462 17.39 3.84 0.00 1.40
1950 2004 6.430308 AGAGATGCCAGCTGAATACATTATTG 59.570 38.462 17.39 0.00 0.00 1.90
1951 2005 6.301486 AGATGCCAGCTGAATACATTATTGA 58.699 36.000 17.39 0.00 0.00 2.57
1952 2006 6.946583 AGATGCCAGCTGAATACATTATTGAT 59.053 34.615 17.39 0.00 0.00 2.57
1953 2007 6.964807 TGCCAGCTGAATACATTATTGATT 57.035 33.333 17.39 0.00 0.00 2.57
2017 2071 8.486210 ACATAGATATCAAAACTAGGCTGTTGA 58.514 33.333 5.32 2.23 34.68 3.18
2027 2081 0.738389 AGGCTGTTGAACAACCAACG 59.262 50.000 18.88 0.00 46.89 4.10
2041 2095 0.802494 CCAACGCATAGTTCCACACC 59.198 55.000 0.00 0.00 42.02 4.16
2046 2100 1.924524 CGCATAGTTCCACACCTTACG 59.075 52.381 0.00 0.00 0.00 3.18
2056 2111 2.555123 CACCTTACGTGCTGCCATT 58.445 52.632 0.00 0.00 35.18 3.16
2077 2132 0.593128 GATTGTGAAGCGTTGCCACT 59.407 50.000 6.61 0.00 0.00 4.00
2078 2133 1.001378 GATTGTGAAGCGTTGCCACTT 60.001 47.619 6.61 0.00 0.00 3.16
2092 2149 2.702592 CCACTTACGGCTCCCATTTA 57.297 50.000 0.00 0.00 0.00 1.40
2130 2189 4.408596 TGATACACTGTGCCCTATGAATGA 59.591 41.667 7.90 0.00 0.00 2.57
2588 2648 4.768448 ACAATGAATGACAGCTGAAATCCA 59.232 37.500 23.35 12.55 0.00 3.41
2736 2798 6.688637 TCGATTCTTGGAAATAGACTACGA 57.311 37.500 0.00 0.00 0.00 3.43
2838 2900 7.755373 GGTGTTTGGATGTTTCTTTTATCTAGC 59.245 37.037 0.00 0.00 0.00 3.42
2974 3036 5.686159 CGACCTACGGTAACATCTAATCT 57.314 43.478 0.00 0.00 35.25 2.40
2975 3037 5.687828 CGACCTACGGTAACATCTAATCTC 58.312 45.833 0.00 0.00 35.25 2.75
2978 3040 5.078256 CCTACGGTAACATCTAATCTCCCT 58.922 45.833 0.00 0.00 0.00 4.20
2979 3041 5.539193 CCTACGGTAACATCTAATCTCCCTT 59.461 44.000 0.00 0.00 0.00 3.95
3215 3278 6.488006 ACTGAAATGATCCATGTTAGTATGGC 59.512 38.462 0.00 0.00 45.83 4.40
3228 3291 0.250467 GTATGGCGCCTGACCATCAT 60.250 55.000 29.70 12.57 44.85 2.45
3398 3461 6.374053 CCACACCATTGAACATTCAGTATACA 59.626 38.462 5.50 0.00 38.61 2.29
3399 3462 7.243487 CACACCATTGAACATTCAGTATACAC 58.757 38.462 5.50 0.00 38.61 2.90
3400 3463 7.119699 CACACCATTGAACATTCAGTATACACT 59.880 37.037 5.50 0.00 38.61 3.55
3401 3464 7.665559 ACACCATTGAACATTCAGTATACACTT 59.334 33.333 5.50 0.00 38.61 3.16
3402 3465 9.161629 CACCATTGAACATTCAGTATACACTTA 57.838 33.333 5.50 0.00 38.61 2.24
3403 3466 9.905713 ACCATTGAACATTCAGTATACACTTAT 57.094 29.630 5.50 0.00 38.61 1.73
3459 3522 5.997384 ACTACAAATTACTTCCTCCGTCT 57.003 39.130 0.00 0.00 0.00 4.18
3472 3535 3.581332 TCCTCCGTCTGGAAATACTTGTT 59.419 43.478 0.00 0.00 45.87 2.83
3495 3558 4.907269 TGGAGAAATGGATGTATCTAGGCA 59.093 41.667 0.00 0.00 0.00 4.75
3538 3601 6.832520 TCCATTTTCATCCATTTCTTCGAA 57.167 33.333 0.00 0.00 0.00 3.71
3552 3621 0.966875 TTCGAATTCCGGACGGAGGA 60.967 55.000 13.64 7.51 46.06 3.71
3574 3643 8.363761 AGGAAGTACTTTAGTAGTTAGCACAT 57.636 34.615 10.02 0.00 42.42 3.21
3612 3681 1.601903 TCCAGTAAAAAGTGCTGCACG 59.398 47.619 25.39 9.74 38.56 5.34
3681 3751 4.764172 GAGGTACTGCAGTCAGAATCATT 58.236 43.478 25.56 0.00 41.55 2.57
3689 3759 4.020928 TGCAGTCAGAATCATTTTGGCATT 60.021 37.500 0.00 0.00 0.00 3.56
3710 3780 7.603784 GGCATTGGTATTCATGAAACTCTTTTT 59.396 33.333 13.09 0.00 0.00 1.94
3832 3902 8.394822 TCCTAAGATAGATTGCTGTACTATCCT 58.605 37.037 0.00 0.00 41.64 3.24
3833 3903 8.465999 CCTAAGATAGATTGCTGTACTATCCTG 58.534 40.741 0.00 0.00 41.64 3.86
3834 3904 7.847711 AAGATAGATTGCTGTACTATCCTGT 57.152 36.000 0.00 0.00 41.64 4.00
3835 3905 8.941995 AAGATAGATTGCTGTACTATCCTGTA 57.058 34.615 0.00 0.00 41.64 2.74
3972 4044 5.710513 TGGCATAATCATTATGTCCTTGC 57.289 39.130 17.59 4.92 45.34 4.01
4118 4190 2.863809 AGGGTAGCCTGACTTGTTTTG 58.136 47.619 14.01 0.00 0.00 2.44
4123 4195 5.001232 GGTAGCCTGACTTGTTTTGTCATA 58.999 41.667 0.00 0.00 42.57 2.15
4129 4201 5.181690 TGACTTGTTTTGTCATAGCAACC 57.818 39.130 0.00 0.00 39.23 3.77
4511 4583 6.543465 TCATCACATCTAATGCCTAAAACCAG 59.457 38.462 0.00 0.00 0.00 4.00
4544 4616 9.590451 CAGAATAAAATGCTTGGACATATTTGT 57.410 29.630 0.00 0.00 39.32 2.83
4610 4682 7.156000 TGTTTGTTGGTTCTGATACGATTCTA 58.844 34.615 0.00 0.00 0.00 2.10
4614 4686 8.025243 TGTTGGTTCTGATACGATTCTAAAAC 57.975 34.615 0.00 0.00 0.00 2.43
5052 5125 7.784470 ACTTAGATTGTTTCTCAGTAGGACT 57.216 36.000 0.00 0.00 37.19 3.85
5134 5207 2.595124 TGTCTTGACACGAAAGCTCA 57.405 45.000 0.00 0.00 0.00 4.26
5178 5251 2.238646 ACTGTCTTGAACTTGTCACCCA 59.761 45.455 0.00 0.00 35.39 4.51
5210 5283 8.291740 CAGACAGATAGAATACTCTCACATGAG 58.708 40.741 0.00 2.24 43.36 2.90
5227 5300 4.463539 ACATGAGAAACTTGCATAATGGCA 59.536 37.500 0.00 0.00 43.19 4.92
5268 5341 9.168451 TCATTGACCTATCGCAATTAAGTTAAA 57.832 29.630 0.00 0.00 32.74 1.52
5326 5504 8.798402 CGTAGATAAGAAGGATATTCTGAACCT 58.202 37.037 0.00 0.00 0.00 3.50
5407 5586 4.820284 AGTAAACAAAGAGCTCTTGTGC 57.180 40.909 29.09 17.09 36.12 4.57
5424 5604 3.826282 CTCAAGGGGAGCCTTGGA 58.174 61.111 2.15 0.00 44.99 3.53
5615 5795 8.539770 TTAGAGAGCTCTTGTGTCAAAATTAG 57.460 34.615 19.36 0.00 40.93 1.73
5616 5796 6.529220 AGAGAGCTCTTGTGTCAAAATTAGT 58.471 36.000 19.36 0.00 36.31 2.24
5617 5797 6.426328 AGAGAGCTCTTGTGTCAAAATTAGTG 59.574 38.462 19.36 0.00 36.31 2.74
5618 5798 6.291377 AGAGCTCTTGTGTCAAAATTAGTGA 58.709 36.000 11.45 0.00 0.00 3.41
5619 5799 6.767902 AGAGCTCTTGTGTCAAAATTAGTGAA 59.232 34.615 11.45 0.00 0.00 3.18
5620 5800 6.963796 AGCTCTTGTGTCAAAATTAGTGAAG 58.036 36.000 0.00 0.00 0.00 3.02
5621 5801 6.016777 AGCTCTTGTGTCAAAATTAGTGAAGG 60.017 38.462 0.00 0.00 0.00 3.46
5622 5802 6.633500 TCTTGTGTCAAAATTAGTGAAGGG 57.367 37.500 0.00 0.00 0.00 3.95
5623 5803 5.534654 TCTTGTGTCAAAATTAGTGAAGGGG 59.465 40.000 0.00 0.00 0.00 4.79
5624 5804 5.055265 TGTGTCAAAATTAGTGAAGGGGA 57.945 39.130 0.00 0.00 0.00 4.81
5625 5805 5.070001 TGTGTCAAAATTAGTGAAGGGGAG 58.930 41.667 0.00 0.00 0.00 4.30
5626 5806 4.079253 TGTCAAAATTAGTGAAGGGGAGC 58.921 43.478 0.00 0.00 0.00 4.70
5627 5807 3.444034 GTCAAAATTAGTGAAGGGGAGCC 59.556 47.826 0.00 0.00 0.00 4.70
5628 5808 3.333680 TCAAAATTAGTGAAGGGGAGCCT 59.666 43.478 0.00 0.00 0.00 4.58
5629 5809 4.089361 CAAAATTAGTGAAGGGGAGCCTT 58.911 43.478 0.00 0.00 0.00 4.35
5630 5810 3.372440 AATTAGTGAAGGGGAGCCTTG 57.628 47.619 0.00 0.00 0.00 3.61
5631 5811 0.991920 TTAGTGAAGGGGAGCCTTGG 59.008 55.000 0.00 0.00 0.00 3.61
5632 5812 1.562672 TAGTGAAGGGGAGCCTTGGC 61.563 60.000 2.97 2.97 0.00 4.52
5633 5813 4.033776 TGAAGGGGAGCCTTGGCG 62.034 66.667 5.95 0.00 0.00 5.69
5641 5821 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5642 5822 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5643 5823 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5644 5824 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5645 5825 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5646 5826 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5647 5827 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5652 5832 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5653 5833 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5654 5834 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5655 5835 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5656 5836 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5657 5837 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5658 5838 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5659 5839 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5660 5840 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5661 5841 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5662 5842 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5663 5843 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5664 5844 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5665 5845 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5666 5846 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5681 5861 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5682 5862 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5683 5863 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5684 5864 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5685 5865 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5686 5866 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5687 5867 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5688 5868 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5689 5869 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5690 5870 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5704 5884 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
5705 5885 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
5706 5886 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
5707 5887 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5708 5888 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5709 5889 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5710 5890 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5711 5891 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5712 5892 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5713 5893 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5714 5894 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5715 5895 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5716 5896 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5717 5897 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5718 5898 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5719 5899 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5720 5900 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5721 5901 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5722 5902 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5723 5903 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5724 5904 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5725 5905 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5726 5906 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5727 5907 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5728 5908 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5729 5909 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5730 5910 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5731 5911 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5732 5912 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5733 5913 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5734 5914 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5735 5915 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5736 5916 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5737 5917 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5738 5918 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5739 5919 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5740 5920 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5741 5921 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5746 5926 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5747 5927 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5748 5928 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5749 5929 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5750 5930 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5751 5931 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5752 5932 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5753 5933 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5754 5934 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5755 5935 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5756 5936 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5757 5937 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5758 5938 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5759 5939 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5760 5940 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5761 5941 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5762 5942 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5763 5943 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5764 5944 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5765 5945 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5790 5970 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
5791 5971 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
5792 5972 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
5793 5973 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
5794 5974 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
5795 5975 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
5796 5976 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
5797 5977 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
5798 5978 0.114168 ATGCACCAGGTTGCCCTTTA 59.886 50.000 10.46 0.00 42.25 1.85
5799 5979 0.539438 TGCACCAGGTTGCCCTTTAG 60.539 55.000 10.46 0.00 42.25 1.85
5800 5980 1.877576 GCACCAGGTTGCCCTTTAGC 61.878 60.000 0.00 0.00 39.89 3.09
5801 5981 0.251341 CACCAGGTTGCCCTTTAGCT 60.251 55.000 0.00 0.00 39.89 3.32
5802 5982 0.038310 ACCAGGTTGCCCTTTAGCTC 59.962 55.000 0.00 0.00 39.89 4.09
5803 5983 0.329596 CCAGGTTGCCCTTTAGCTCT 59.670 55.000 0.00 0.00 39.89 4.09
5804 5984 1.272147 CCAGGTTGCCCTTTAGCTCTT 60.272 52.381 0.00 0.00 39.89 2.85
5805 5985 1.815003 CAGGTTGCCCTTTAGCTCTTG 59.185 52.381 0.00 0.00 39.89 3.02
5806 5986 1.425448 AGGTTGCCCTTTAGCTCTTGT 59.575 47.619 0.00 0.00 38.13 3.16
5807 5987 1.541588 GGTTGCCCTTTAGCTCTTGTG 59.458 52.381 0.00 0.00 0.00 3.33
5808 5988 2.230660 GTTGCCCTTTAGCTCTTGTGT 58.769 47.619 0.00 0.00 0.00 3.72
5809 5989 2.185004 TGCCCTTTAGCTCTTGTGTC 57.815 50.000 0.00 0.00 0.00 3.67
5810 5990 1.419762 TGCCCTTTAGCTCTTGTGTCA 59.580 47.619 0.00 0.00 0.00 3.58
5811 5991 2.158682 TGCCCTTTAGCTCTTGTGTCAA 60.159 45.455 0.00 0.00 0.00 3.18
5812 5992 2.884639 GCCCTTTAGCTCTTGTGTCAAA 59.115 45.455 0.00 0.00 0.00 2.69
5813 5993 3.317993 GCCCTTTAGCTCTTGTGTCAAAA 59.682 43.478 0.00 0.00 0.00 2.44
5814 5994 4.021981 GCCCTTTAGCTCTTGTGTCAAAAT 60.022 41.667 0.00 0.00 0.00 1.82
5815 5995 5.509670 GCCCTTTAGCTCTTGTGTCAAAATT 60.510 40.000 0.00 0.00 0.00 1.82
5816 5996 6.294508 GCCCTTTAGCTCTTGTGTCAAAATTA 60.295 38.462 0.00 0.00 0.00 1.40
5900 6080 3.140325 TCCTCAAACAAGGACCACATC 57.860 47.619 0.00 0.00 40.60 3.06
5913 6093 1.271597 ACCACATCCTGCTGTTTCTCC 60.272 52.381 0.00 0.00 0.00 3.71
5919 6099 0.397941 CCTGCTGTTTCTCCCAGTCA 59.602 55.000 0.00 0.00 32.41 3.41
6041 6221 3.650139 ACTACAAGATGTCGTTGACCAC 58.350 45.455 0.00 0.00 0.00 4.16
6068 6248 4.933505 TGACAATCCTGCAAATGTTGAA 57.066 36.364 7.51 0.00 0.00 2.69
6120 6300 3.776969 AGAATGGATGCTGTCTTGACCTA 59.223 43.478 0.00 0.00 0.00 3.08
6134 6314 6.212589 TGTCTTGACCTATATTGTGACCTGAA 59.787 38.462 0.00 0.00 0.00 3.02
6146 6327 6.513806 TTGTGACCTGAAATAACATCCATG 57.486 37.500 0.00 0.00 0.00 3.66
6175 6356 4.282292 ACTATAGGCCTTGGACTACCTT 57.718 45.455 12.58 0.00 37.04 3.50
6301 6482 1.349973 GATTTCAAGGCGCGCTCTC 59.650 57.895 32.29 14.98 0.00 3.20
6637 6836 3.851458 ACGAGGTAAAAAGGAACCTGT 57.149 42.857 0.00 0.00 46.22 4.00
6676 6875 7.630242 AAATCATGTTCTTCCGTATGTTGAT 57.370 32.000 0.00 0.00 0.00 2.57
6677 6876 6.609237 ATCATGTTCTTCCGTATGTTGATG 57.391 37.500 0.00 0.00 0.00 3.07
6678 6877 5.729510 TCATGTTCTTCCGTATGTTGATGA 58.270 37.500 0.00 0.00 0.00 2.92
6679 6878 5.580691 TCATGTTCTTCCGTATGTTGATGAC 59.419 40.000 0.00 0.00 0.00 3.06
6680 6879 5.147330 TGTTCTTCCGTATGTTGATGACT 57.853 39.130 0.00 0.00 0.00 3.41
6681 6880 5.168569 TGTTCTTCCGTATGTTGATGACTC 58.831 41.667 0.00 0.00 0.00 3.36
6749 6948 0.302890 CGTCTCAATCTTGCGGCATC 59.697 55.000 2.28 0.00 0.00 3.91
6792 6995 7.967771 TTGATATGCAAATGTGTTCAATACG 57.032 32.000 0.00 0.00 32.46 3.06
6818 7021 7.489113 GCCATGATAAAACATTACAGTGGAAAG 59.511 37.037 0.00 0.00 0.00 2.62
6848 7051 5.250982 TGATCTGGACATATCATCAATGGC 58.749 41.667 0.00 0.00 0.00 4.40
6872 7075 7.210174 GCCACATAATCTAGAATGTCAGTGTA 58.790 38.462 7.03 0.00 34.12 2.90
6889 7092 5.588246 TCAGTGTAGTTGCAACTTCAAATCA 59.412 36.000 35.20 20.46 37.92 2.57
6895 7098 8.196771 TGTAGTTGCAACTTCAAATCAATCTTT 58.803 29.630 35.20 9.54 40.37 2.52
6896 7099 7.473027 AGTTGCAACTTCAAATCAATCTTTG 57.527 32.000 26.36 0.00 35.21 2.77
6898 7101 7.223387 AGTTGCAACTTCAAATCAATCTTTGTC 59.777 33.333 26.36 0.00 35.21 3.18
6899 7102 6.808829 TGCAACTTCAAATCAATCTTTGTCT 58.191 32.000 0.00 0.00 37.39 3.41
6910 7113 9.971922 AAATCAATCTTTGTCTTCTTTTAGTGG 57.028 29.630 0.00 0.00 0.00 4.00
6911 7114 8.924511 ATCAATCTTTGTCTTCTTTTAGTGGA 57.075 30.769 0.00 0.00 0.00 4.02
6949 7165 3.245586 ACCTAATGTGGGCCTTCAAATCA 60.246 43.478 4.53 0.00 0.00 2.57
6950 7166 3.768757 CCTAATGTGGGCCTTCAAATCAA 59.231 43.478 4.53 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.683870 ACCTGGGTCGTTAATAAATAAATTGTA 57.316 29.630 0.00 0.00 0.00 2.41
6 7 8.584063 ACCTGGGTCGTTAATAAATAAATTGT 57.416 30.769 0.00 0.00 0.00 2.71
7 8 9.863845 AAACCTGGGTCGTTAATAAATAAATTG 57.136 29.630 0.00 0.00 0.00 2.32
8 9 9.863845 CAAACCTGGGTCGTTAATAAATAAATT 57.136 29.630 0.00 0.00 0.00 1.82
9 10 9.245481 TCAAACCTGGGTCGTTAATAAATAAAT 57.755 29.630 0.00 0.00 0.00 1.40
10 11 8.632906 TCAAACCTGGGTCGTTAATAAATAAA 57.367 30.769 0.00 0.00 0.00 1.40
11 12 8.632906 TTCAAACCTGGGTCGTTAATAAATAA 57.367 30.769 0.00 0.00 0.00 1.40
12 13 8.632906 TTTCAAACCTGGGTCGTTAATAAATA 57.367 30.769 0.00 0.00 0.00 1.40
14 15 6.956202 TTTCAAACCTGGGTCGTTAATAAA 57.044 33.333 0.00 0.00 0.00 1.40
15 16 6.956202 TTTTCAAACCTGGGTCGTTAATAA 57.044 33.333 0.00 0.00 0.00 1.40
36 37 7.497925 AGAGAAAGTCGCATCTAAAGTTTTT 57.502 32.000 0.00 0.00 0.00 1.94
37 38 7.012421 ACAAGAGAAAGTCGCATCTAAAGTTTT 59.988 33.333 0.00 0.00 0.00 2.43
38 39 6.483640 ACAAGAGAAAGTCGCATCTAAAGTTT 59.516 34.615 0.00 0.00 0.00 2.66
39 40 5.992217 ACAAGAGAAAGTCGCATCTAAAGTT 59.008 36.000 0.00 0.00 0.00 2.66
40 41 5.542779 ACAAGAGAAAGTCGCATCTAAAGT 58.457 37.500 0.00 0.00 0.00 2.66
41 42 6.473397 AACAAGAGAAAGTCGCATCTAAAG 57.527 37.500 0.00 0.00 0.00 1.85
42 43 6.861065 AAACAAGAGAAAGTCGCATCTAAA 57.139 33.333 0.00 0.00 0.00 1.85
43 44 6.073222 GGAAAACAAGAGAAAGTCGCATCTAA 60.073 38.462 0.00 0.00 0.00 2.10
44 45 5.408604 GGAAAACAAGAGAAAGTCGCATCTA 59.591 40.000 0.00 0.00 0.00 1.98
45 46 4.214332 GGAAAACAAGAGAAAGTCGCATCT 59.786 41.667 0.00 0.00 0.00 2.90
46 47 4.214332 AGGAAAACAAGAGAAAGTCGCATC 59.786 41.667 0.00 0.00 0.00 3.91
47 48 4.137543 AGGAAAACAAGAGAAAGTCGCAT 58.862 39.130 0.00 0.00 0.00 4.73
48 49 3.541632 AGGAAAACAAGAGAAAGTCGCA 58.458 40.909 0.00 0.00 0.00 5.10
49 50 3.363084 CGAGGAAAACAAGAGAAAGTCGC 60.363 47.826 0.00 0.00 0.00 5.19
50 51 3.802685 ACGAGGAAAACAAGAGAAAGTCG 59.197 43.478 0.00 0.00 0.00 4.18
51 52 4.571176 ACACGAGGAAAACAAGAGAAAGTC 59.429 41.667 0.00 0.00 0.00 3.01
52 53 4.514401 ACACGAGGAAAACAAGAGAAAGT 58.486 39.130 0.00 0.00 0.00 2.66
53 54 6.419771 GTTACACGAGGAAAACAAGAGAAAG 58.580 40.000 0.00 0.00 0.00 2.62
54 55 5.295045 GGTTACACGAGGAAAACAAGAGAAA 59.705 40.000 0.00 0.00 0.00 2.52
55 56 4.812626 GGTTACACGAGGAAAACAAGAGAA 59.187 41.667 0.00 0.00 0.00 2.87
56 57 4.374399 GGTTACACGAGGAAAACAAGAGA 58.626 43.478 0.00 0.00 0.00 3.10
57 58 3.497262 GGGTTACACGAGGAAAACAAGAG 59.503 47.826 0.00 0.00 0.00 2.85
58 59 3.135167 AGGGTTACACGAGGAAAACAAGA 59.865 43.478 0.00 0.00 0.00 3.02
59 60 3.473625 AGGGTTACACGAGGAAAACAAG 58.526 45.455 0.00 0.00 0.00 3.16
60 61 3.564053 AGGGTTACACGAGGAAAACAA 57.436 42.857 0.00 0.00 0.00 2.83
61 62 3.007182 CCTAGGGTTACACGAGGAAAACA 59.993 47.826 8.09 0.00 0.00 2.83
62 63 3.007290 ACCTAGGGTTACACGAGGAAAAC 59.993 47.826 20.31 0.00 27.29 2.43
63 64 3.007182 CACCTAGGGTTACACGAGGAAAA 59.993 47.826 20.31 0.00 31.02 2.29
64 65 2.564062 CACCTAGGGTTACACGAGGAAA 59.436 50.000 20.31 0.00 31.02 3.13
65 66 2.173519 CACCTAGGGTTACACGAGGAA 58.826 52.381 20.31 0.00 31.02 3.36
66 67 1.617804 CCACCTAGGGTTACACGAGGA 60.618 57.143 20.31 0.00 31.02 3.71
67 68 0.822164 CCACCTAGGGTTACACGAGG 59.178 60.000 14.81 12.22 31.02 4.63
68 69 0.175073 GCCACCTAGGGTTACACGAG 59.825 60.000 14.81 0.00 38.09 4.18
69 70 2.279842 GCCACCTAGGGTTACACGA 58.720 57.895 14.81 0.00 38.09 4.35
70 71 4.926207 GCCACCTAGGGTTACACG 57.074 61.111 14.81 0.00 38.09 4.49
95 96 1.002544 GTGAAGTTGGGAGGGAGAGTG 59.997 57.143 0.00 0.00 0.00 3.51
105 106 0.741221 GGCTCGCTAGTGAAGTTGGG 60.741 60.000 7.52 0.00 0.00 4.12
110 112 0.248539 GTACGGGCTCGCTAGTGAAG 60.249 60.000 5.51 3.23 40.63 3.02
114 116 0.384669 GAATGTACGGGCTCGCTAGT 59.615 55.000 5.51 0.00 40.63 2.57
115 117 0.384309 TGAATGTACGGGCTCGCTAG 59.616 55.000 5.51 0.00 40.63 3.42
116 118 0.101759 GTGAATGTACGGGCTCGCTA 59.898 55.000 5.51 0.00 40.63 4.26
117 119 1.153628 GTGAATGTACGGGCTCGCT 60.154 57.895 5.51 0.00 40.63 4.93
129 132 1.379044 GGCAGTGGGGAGGTGAATG 60.379 63.158 0.00 0.00 0.00 2.67
155 158 1.845627 CTCCTGCCACTGACCACCAT 61.846 60.000 0.00 0.00 0.00 3.55
162 165 0.846427 AATTCCCCTCCTGCCACTGA 60.846 55.000 0.00 0.00 0.00 3.41
164 167 1.575447 GGAATTCCCCTCCTGCCACT 61.575 60.000 14.03 0.00 0.00 4.00
170 173 2.680370 GCACCGGAATTCCCCTCCT 61.680 63.158 19.01 0.00 0.00 3.69
223 228 1.071605 GTTGCAACTGCGAGGACTAG 58.928 55.000 22.36 0.00 45.83 2.57
236 241 0.457509 CAACCGCACAAGTGTTGCAA 60.458 50.000 0.00 0.00 0.00 4.08
240 245 1.379309 ACCCAACCGCACAAGTGTT 60.379 52.632 1.79 0.00 0.00 3.32
241 246 2.118404 CACCCAACCGCACAAGTGT 61.118 57.895 1.79 0.00 0.00 3.55
243 248 3.216292 GCACCCAACCGCACAAGT 61.216 61.111 0.00 0.00 0.00 3.16
253 258 0.597568 CAATGAAGAAGCGCACCCAA 59.402 50.000 11.47 0.00 0.00 4.12
257 262 2.413371 GGAAGACAATGAAGAAGCGCAC 60.413 50.000 11.47 2.78 0.00 5.34
258 263 1.806542 GGAAGACAATGAAGAAGCGCA 59.193 47.619 11.47 0.00 0.00 6.09
269 274 0.112412 ACCAAAGCCCGGAAGACAAT 59.888 50.000 0.73 0.00 0.00 2.71
287 298 4.508662 AGATGGACAAATTCGAAGAGGAC 58.491 43.478 3.35 0.00 38.43 3.85
293 304 5.068234 ACGTCTAGATGGACAAATTCGAA 57.932 39.130 16.30 0.00 36.12 3.71
298 309 5.171147 CGACTACGTCTAGATGGACAAAT 57.829 43.478 16.30 0.00 36.12 2.32
321 332 0.963962 AAACTACGTCGGAGCTCCAA 59.036 50.000 31.67 12.44 35.14 3.53
338 349 2.895404 ACTAACAGGACACGGCTAGAAA 59.105 45.455 0.00 0.00 0.00 2.52
343 354 0.756903 AACACTAACAGGACACGGCT 59.243 50.000 0.00 0.00 0.00 5.52
349 360 3.973657 TGACGAGAAACACTAACAGGAC 58.026 45.455 0.00 0.00 0.00 3.85
359 382 0.032815 TCGCCACATGACGAGAAACA 59.967 50.000 0.00 0.00 33.69 2.83
385 410 4.634443 GCGTAAATCTTAAGCTCTGGGAAA 59.366 41.667 0.00 0.00 0.00 3.13
388 413 3.531538 TGCGTAAATCTTAAGCTCTGGG 58.468 45.455 0.00 0.00 0.00 4.45
390 415 4.034510 CCCTTGCGTAAATCTTAAGCTCTG 59.965 45.833 0.00 0.00 0.00 3.35
391 416 4.192317 CCCTTGCGTAAATCTTAAGCTCT 58.808 43.478 0.00 0.00 0.00 4.09
393 418 3.951663 ACCCTTGCGTAAATCTTAAGCT 58.048 40.909 0.00 0.00 0.00 3.74
403 428 1.219646 GTCGTTGAACCCTTGCGTAA 58.780 50.000 0.00 0.00 0.00 3.18
406 431 1.278637 GTGTCGTTGAACCCTTGCG 59.721 57.895 0.00 0.00 0.00 4.85
423 448 2.111043 CGGGAGCCACAGTTGTGT 59.889 61.111 11.02 0.00 44.21 3.72
424 449 1.669115 CTCGGGAGCCACAGTTGTG 60.669 63.158 5.28 5.28 45.23 3.33
425 450 2.743718 CTCGGGAGCCACAGTTGT 59.256 61.111 0.00 0.00 0.00 3.32
439 464 1.006805 CCCTAAGGATCAGCGCTCG 60.007 63.158 7.13 3.29 33.47 5.03
441 466 0.105658 TACCCCTAAGGATCAGCGCT 60.106 55.000 2.64 2.64 39.89 5.92
448 473 1.416401 CGTGCACATACCCCTAAGGAT 59.584 52.381 18.64 0.00 39.89 3.24
459 484 3.244078 ACCAGAAAGTCTTCGTGCACATA 60.244 43.478 18.64 0.42 36.61 2.29
461 486 1.134521 ACCAGAAAGTCTTCGTGCACA 60.135 47.619 18.64 0.81 36.61 4.57
478 503 1.142667 TGACCTTGCTGATGACAACCA 59.857 47.619 0.00 0.00 0.00 3.67
481 506 1.881973 GCTTGACCTTGCTGATGACAA 59.118 47.619 0.00 0.00 0.00 3.18
564 589 0.948678 ATTTTGTGACCACCGAACGG 59.051 50.000 11.83 11.83 42.03 4.44
655 680 9.981114 AGAACTGTTATAAAAATTCACCAAAGG 57.019 29.630 0.03 0.00 0.00 3.11
684 709 9.061435 CCCACATCCAAAGCTTTTTAAAAATAA 57.939 29.630 9.53 0.00 0.00 1.40
685 710 8.432805 TCCCACATCCAAAGCTTTTTAAAAATA 58.567 29.630 9.53 0.00 0.00 1.40
686 711 7.286313 TCCCACATCCAAAGCTTTTTAAAAAT 58.714 30.769 9.53 0.00 0.00 1.82
687 712 6.653989 TCCCACATCCAAAGCTTTTTAAAAA 58.346 32.000 9.53 12.62 0.00 1.94
688 713 6.240549 TCCCACATCCAAAGCTTTTTAAAA 57.759 33.333 9.53 0.00 0.00 1.52
689 714 5.878406 TCCCACATCCAAAGCTTTTTAAA 57.122 34.783 9.53 0.00 0.00 1.52
690 715 5.454045 GGTTCCCACATCCAAAGCTTTTTAA 60.454 40.000 9.53 0.00 0.00 1.52
691 716 4.039852 GGTTCCCACATCCAAAGCTTTTTA 59.960 41.667 9.53 0.31 0.00 1.52
692 717 3.181455 GGTTCCCACATCCAAAGCTTTTT 60.181 43.478 9.53 0.00 0.00 1.94
693 718 2.368548 GGTTCCCACATCCAAAGCTTTT 59.631 45.455 9.53 0.00 0.00 2.27
694 719 1.970640 GGTTCCCACATCCAAAGCTTT 59.029 47.619 5.69 5.69 0.00 3.51
695 720 1.133199 TGGTTCCCACATCCAAAGCTT 60.133 47.619 0.00 0.00 0.00 3.74
696 721 0.482446 TGGTTCCCACATCCAAAGCT 59.518 50.000 0.00 0.00 0.00 3.74
697 722 1.273327 CTTGGTTCCCACATCCAAAGC 59.727 52.381 0.00 0.00 40.11 3.51
698 723 2.558359 GTCTTGGTTCCCACATCCAAAG 59.442 50.000 0.00 0.00 40.11 2.77
699 724 2.176798 AGTCTTGGTTCCCACATCCAAA 59.823 45.455 0.00 0.00 40.11 3.28
700 725 1.780309 AGTCTTGGTTCCCACATCCAA 59.220 47.619 0.00 0.00 38.65 3.53
701 726 1.444933 AGTCTTGGTTCCCACATCCA 58.555 50.000 0.00 0.00 30.78 3.41
702 727 2.558359 CAAAGTCTTGGTTCCCACATCC 59.442 50.000 0.00 0.00 30.78 3.51
703 728 3.486383 TCAAAGTCTTGGTTCCCACATC 58.514 45.455 0.00 0.00 30.78 3.06
704 729 3.593442 TCAAAGTCTTGGTTCCCACAT 57.407 42.857 0.00 0.00 30.78 3.21
705 730 3.287222 CTTCAAAGTCTTGGTTCCCACA 58.713 45.455 0.00 0.00 30.78 4.17
706 731 2.034685 GCTTCAAAGTCTTGGTTCCCAC 59.965 50.000 0.00 0.00 30.78 4.61
707 732 2.091885 AGCTTCAAAGTCTTGGTTCCCA 60.092 45.455 0.00 0.00 33.01 4.37
708 733 2.294512 CAGCTTCAAAGTCTTGGTTCCC 59.705 50.000 0.00 0.00 33.01 3.97
709 734 3.214328 TCAGCTTCAAAGTCTTGGTTCC 58.786 45.455 0.00 0.00 33.01 3.62
710 735 4.900635 TTCAGCTTCAAAGTCTTGGTTC 57.099 40.909 0.00 0.00 33.01 3.62
711 736 5.185828 AGTTTTCAGCTTCAAAGTCTTGGTT 59.814 36.000 0.00 0.00 33.01 3.67
712 737 4.706962 AGTTTTCAGCTTCAAAGTCTTGGT 59.293 37.500 0.00 0.00 33.01 3.67
713 738 5.254339 AGTTTTCAGCTTCAAAGTCTTGG 57.746 39.130 0.00 0.00 33.01 3.61
714 739 6.909357 CACTAGTTTTCAGCTTCAAAGTCTTG 59.091 38.462 0.00 0.00 0.00 3.02
715 740 6.823689 TCACTAGTTTTCAGCTTCAAAGTCTT 59.176 34.615 0.00 0.00 0.00 3.01
716 741 6.349300 TCACTAGTTTTCAGCTTCAAAGTCT 58.651 36.000 0.00 0.00 0.00 3.24
717 742 6.480320 TCTCACTAGTTTTCAGCTTCAAAGTC 59.520 38.462 0.00 0.00 0.00 3.01
718 743 6.349300 TCTCACTAGTTTTCAGCTTCAAAGT 58.651 36.000 0.00 0.00 0.00 2.66
727 752 3.181526 GCGTGCATCTCACTAGTTTTCAG 60.182 47.826 0.00 0.00 43.46 3.02
733 758 1.404717 CCTTGCGTGCATCTCACTAGT 60.405 52.381 0.00 0.00 43.46 2.57
734 759 1.284657 CCTTGCGTGCATCTCACTAG 58.715 55.000 0.00 0.00 43.46 2.57
735 760 0.108186 CCCTTGCGTGCATCTCACTA 60.108 55.000 0.00 0.00 43.46 2.74
736 761 1.376424 CCCTTGCGTGCATCTCACT 60.376 57.895 0.00 0.00 43.46 3.41
738 763 1.078918 CTCCCTTGCGTGCATCTCA 60.079 57.895 0.00 0.00 0.00 3.27
739 764 0.809241 CTCTCCCTTGCGTGCATCTC 60.809 60.000 0.00 0.00 0.00 2.75
873 904 0.250295 AGGCTTTGCTTGCTCGTGTA 60.250 50.000 0.00 0.00 0.00 2.90
903 934 2.298661 GGGCCGAGGAGGGAAAGAA 61.299 63.158 0.00 0.00 41.48 2.52
905 936 3.798511 GGGGCCGAGGAGGGAAAG 61.799 72.222 0.00 0.00 41.48 2.62
906 937 4.348495 AGGGGCCGAGGAGGGAAA 62.348 66.667 0.00 0.00 41.48 3.13
907 938 4.798682 GAGGGGCCGAGGAGGGAA 62.799 72.222 0.00 0.00 41.48 3.97
1163 1205 2.280186 GGGAGACTAATGCGCGGG 60.280 66.667 8.83 0.00 0.00 6.13
1174 1216 0.814812 CGAGGACTAGGACGGGAGAC 60.815 65.000 0.00 0.00 0.00 3.36
1175 1217 1.525923 CGAGGACTAGGACGGGAGA 59.474 63.158 0.00 0.00 0.00 3.71
1311 1353 3.591835 ACAAACACTTGGCGGGCG 61.592 61.111 0.00 0.00 36.82 6.13
1368 1410 1.282248 GCTACGAGCACGACTGCAAA 61.282 55.000 11.40 0.00 46.97 3.68
1369 1411 1.733041 GCTACGAGCACGACTGCAA 60.733 57.895 11.40 0.00 46.97 4.08
1372 1414 2.155194 GCAGCTACGAGCACGACTG 61.155 63.158 11.40 14.72 45.56 3.51
1397 1439 2.433491 AGTTAATGCGCACGCCGA 60.433 55.556 14.90 0.00 41.09 5.54
1406 1448 1.429148 CGGCAGGGTCGAGTTAATGC 61.429 60.000 0.00 0.00 29.41 3.56
1409 1451 0.174845 CATCGGCAGGGTCGAGTTAA 59.825 55.000 0.00 0.00 44.58 2.01
1413 1455 0.179073 AAATCATCGGCAGGGTCGAG 60.179 55.000 0.00 0.00 44.58 4.04
1415 1457 0.378257 CAAAATCATCGGCAGGGTCG 59.622 55.000 0.00 0.00 0.00 4.79
1417 1459 1.004745 ACTCAAAATCATCGGCAGGGT 59.995 47.619 0.00 0.00 0.00 4.34
1420 1462 7.816945 AAAAATAACTCAAAATCATCGGCAG 57.183 32.000 0.00 0.00 0.00 4.85
1424 1466 9.716507 ATCGGTAAAAATAACTCAAAATCATCG 57.283 29.630 0.00 0.00 0.00 3.84
1447 1489 6.310467 TGCAGCTAAGTGACTTACTAAAATCG 59.690 38.462 0.00 0.00 39.18 3.34
1484 1529 7.539436 GCCTTAATTCTCTTTACCCTTTTCAG 58.461 38.462 0.00 0.00 0.00 3.02
1487 1532 6.243148 TCGCCTTAATTCTCTTTACCCTTTT 58.757 36.000 0.00 0.00 0.00 2.27
1491 1536 3.560481 GCTCGCCTTAATTCTCTTTACCC 59.440 47.826 0.00 0.00 0.00 3.69
1528 1573 4.553323 TCGGAAAGTAACACTAAGCTGAC 58.447 43.478 0.00 0.00 0.00 3.51
1532 1577 8.328864 CAATAGAATCGGAAAGTAACACTAAGC 58.671 37.037 0.00 0.00 0.00 3.09
1533 1578 8.818057 CCAATAGAATCGGAAAGTAACACTAAG 58.182 37.037 0.00 0.00 0.00 2.18
1536 1581 6.942976 TCCAATAGAATCGGAAAGTAACACT 58.057 36.000 0.00 0.00 0.00 3.55
1537 1582 7.787725 ATCCAATAGAATCGGAAAGTAACAC 57.212 36.000 0.00 0.00 31.18 3.32
1541 1586 6.262273 GGCAAATCCAATAGAATCGGAAAGTA 59.738 38.462 0.00 0.00 31.18 2.24
1546 1591 3.138304 CGGCAAATCCAATAGAATCGGA 58.862 45.455 0.00 0.00 34.01 4.55
1548 1593 2.878406 ACCGGCAAATCCAATAGAATCG 59.122 45.455 0.00 0.00 34.01 3.34
1549 1594 4.918810 AACCGGCAAATCCAATAGAATC 57.081 40.909 0.00 0.00 34.01 2.52
1552 1597 3.201266 ACCTAACCGGCAAATCCAATAGA 59.799 43.478 0.00 0.00 35.61 1.98
1553 1598 3.315191 CACCTAACCGGCAAATCCAATAG 59.685 47.826 0.00 0.00 35.61 1.73
1554 1599 3.054287 TCACCTAACCGGCAAATCCAATA 60.054 43.478 0.00 0.00 35.61 1.90
1555 1600 2.099405 CACCTAACCGGCAAATCCAAT 58.901 47.619 0.00 0.00 35.61 3.16
1556 1601 1.074084 TCACCTAACCGGCAAATCCAA 59.926 47.619 0.00 0.00 35.61 3.53
1557 1602 0.693622 TCACCTAACCGGCAAATCCA 59.306 50.000 0.00 0.00 35.61 3.41
1563 1608 2.345991 GCTGTCACCTAACCGGCA 59.654 61.111 0.00 0.00 35.61 5.69
1568 1613 3.064271 TCAAAAACACGCTGTCACCTAAC 59.936 43.478 0.00 0.00 0.00 2.34
1576 1621 2.862512 CACAGTTCAAAAACACGCTGT 58.137 42.857 0.00 0.00 37.88 4.40
1578 1623 1.201181 TGCACAGTTCAAAAACACGCT 59.799 42.857 0.00 0.00 37.88 5.07
1579 1624 1.623359 TGCACAGTTCAAAAACACGC 58.377 45.000 0.00 0.00 37.88 5.34
1586 1631 4.749099 GGCAAATACAATGCACAGTTCAAA 59.251 37.500 0.00 0.00 45.60 2.69
1732 1777 4.146156 TCGGCCCTCGATACCCCA 62.146 66.667 0.00 0.00 43.74 4.96
1770 1815 4.512198 CAGCACAAAGGCAAATCATCAAAA 59.488 37.500 0.00 0.00 35.83 2.44
1839 1884 2.776536 AGCTGGGCTCTAGATGTTTGAT 59.223 45.455 0.00 0.00 30.62 2.57
1876 1921 1.737236 GCGGTGAATAGTGATGCACAA 59.263 47.619 0.00 0.00 42.85 3.33
1912 1965 3.260128 TGGCATCTCTGTAGCAGGATATG 59.740 47.826 0.00 0.63 31.51 1.78
1913 1966 3.514539 TGGCATCTCTGTAGCAGGATAT 58.485 45.455 0.00 0.00 31.51 1.63
1914 1967 2.896044 CTGGCATCTCTGTAGCAGGATA 59.104 50.000 0.00 0.00 31.51 2.59
1915 1968 1.693062 CTGGCATCTCTGTAGCAGGAT 59.307 52.381 0.00 0.00 31.51 3.24
1927 1980 6.301486 TCAATAATGTATTCAGCTGGCATCT 58.699 36.000 15.13 7.37 0.00 2.90
1928 1981 6.564709 TCAATAATGTATTCAGCTGGCATC 57.435 37.500 15.13 3.54 0.00 3.91
2017 2071 2.292292 GTGGAACTATGCGTTGGTTGTT 59.708 45.455 2.40 0.00 35.56 2.83
2027 2081 2.671396 CACGTAAGGTGTGGAACTATGC 59.329 50.000 0.00 0.00 41.89 3.14
2046 2100 0.889994 TCACAATCCAATGGCAGCAC 59.110 50.000 0.00 0.00 0.00 4.40
2056 2111 0.821301 TGGCAACGCTTCACAATCCA 60.821 50.000 0.00 0.00 42.51 3.41
2077 2132 3.055021 TGACACATAAATGGGAGCCGTAA 60.055 43.478 0.00 0.00 34.60 3.18
2078 2133 2.502130 TGACACATAAATGGGAGCCGTA 59.498 45.455 0.00 0.00 34.60 4.02
2092 2149 6.016024 ACAGTGTATCAGCAAAAATGACACAT 60.016 34.615 0.00 0.00 36.56 3.21
2130 2189 5.936956 CAGGCAGAGTTATCAAAGAAGAAGT 59.063 40.000 0.00 0.00 0.00 3.01
2562 2622 7.039853 TGGATTTCAGCTGTCATTCATTGTTAA 60.040 33.333 14.67 0.00 0.00 2.01
2615 2677 5.643777 AGCAATACACTACACTTTCCATGAC 59.356 40.000 0.00 0.00 0.00 3.06
2736 2798 0.033796 CCTCAGCAACCACCATGGAT 60.034 55.000 21.47 0.00 40.96 3.41
2838 2900 6.255215 GGTATGTTTGACAATGTGGTAATCG 58.745 40.000 0.00 0.00 0.00 3.34
3215 3278 0.250038 CTGGGTATGATGGTCAGGCG 60.250 60.000 0.00 0.00 0.00 5.52
3250 3313 7.010923 CCTGTAATAGATGTCAGCTTGAGAAAC 59.989 40.741 0.00 0.00 0.00 2.78
3398 3461 6.672657 ACCCAGTTGATTCACCTAGTATAAGT 59.327 38.462 0.00 0.00 0.00 2.24
3399 3462 7.125792 ACCCAGTTGATTCACCTAGTATAAG 57.874 40.000 0.00 0.00 0.00 1.73
3400 3463 6.099269 GGACCCAGTTGATTCACCTAGTATAA 59.901 42.308 0.00 0.00 0.00 0.98
3401 3464 5.601313 GGACCCAGTTGATTCACCTAGTATA 59.399 44.000 0.00 0.00 0.00 1.47
3402 3465 4.409247 GGACCCAGTTGATTCACCTAGTAT 59.591 45.833 0.00 0.00 0.00 2.12
3403 3466 3.773119 GGACCCAGTTGATTCACCTAGTA 59.227 47.826 0.00 0.00 0.00 1.82
3404 3467 2.572104 GGACCCAGTTGATTCACCTAGT 59.428 50.000 0.00 0.00 0.00 2.57
3405 3468 2.840651 AGGACCCAGTTGATTCACCTAG 59.159 50.000 0.00 0.00 0.00 3.02
3455 3518 4.566004 TCTCCAACAAGTATTTCCAGACG 58.434 43.478 0.00 0.00 0.00 4.18
3459 3522 6.310941 TCCATTTCTCCAACAAGTATTTCCA 58.689 36.000 0.00 0.00 0.00 3.53
3472 3535 4.907269 TGCCTAGATACATCCATTTCTCCA 59.093 41.667 0.00 0.00 0.00 3.86
3538 3601 1.109609 GTACTTCCTCCGTCCGGAAT 58.890 55.000 5.23 0.00 44.66 3.01
3574 3643 5.869579 ACTGGAAGATCAAGCTTTTCACTA 58.130 37.500 10.06 1.96 37.43 2.74
3612 3681 2.814336 CCAGGTAAACTTTCCTGCTGTC 59.186 50.000 9.08 0.00 46.83 3.51
3656 3725 2.009681 TCTGACTGCAGTACCTCCAA 57.990 50.000 21.73 1.75 42.84 3.53
3681 3751 6.211184 AGAGTTTCATGAATACCAATGCCAAA 59.789 34.615 9.40 0.00 0.00 3.28
3710 3780 2.891112 CCAAAACAGAAAGCTGCACAA 58.109 42.857 1.02 0.00 46.26 3.33
3827 3897 8.349245 CCGCATCATTAAAACAATTACAGGATA 58.651 33.333 0.00 0.00 0.00 2.59
3828 3898 7.068103 TCCGCATCATTAAAACAATTACAGGAT 59.932 33.333 0.00 0.00 0.00 3.24
3829 3899 6.375736 TCCGCATCATTAAAACAATTACAGGA 59.624 34.615 0.00 0.00 0.00 3.86
3830 3900 6.559810 TCCGCATCATTAAAACAATTACAGG 58.440 36.000 0.00 0.00 0.00 4.00
3832 3902 8.994429 ATTTCCGCATCATTAAAACAATTACA 57.006 26.923 0.00 0.00 0.00 2.41
3935 4007 3.575965 ATGCCAAGCGGAAACTAAAAG 57.424 42.857 0.00 0.00 0.00 2.27
3972 4044 9.635520 TTGACGTCTTTATAGGAGTAAAGAAAG 57.364 33.333 17.92 9.67 46.50 2.62
4188 4260 3.931578 AGAAATGACACTGACAGCCTAC 58.068 45.455 1.25 0.00 0.00 3.18
4511 4583 5.068198 TCCAAGCATTTTATTCTGCATCTCC 59.932 40.000 0.00 0.00 40.88 3.71
4610 4682 2.819608 ACTCCATACTGCGCATTGTTTT 59.180 40.909 12.24 0.00 0.00 2.43
4614 4686 2.826428 AGTACTCCATACTGCGCATTG 58.174 47.619 12.24 9.44 42.90 2.82
5052 5125 4.261572 GCCAGCAAAGTTTTGTGTAGATCA 60.262 41.667 6.48 0.00 40.24 2.92
5120 5193 1.264020 GCAACATGAGCTTTCGTGTCA 59.736 47.619 0.00 0.00 38.75 3.58
5134 5207 6.603201 AGTGGCTAACATAATTACAGCAACAT 59.397 34.615 15.04 3.92 38.41 2.71
5178 5251 5.837979 AGAGTATTCTATCTGTCTGGCATGT 59.162 40.000 0.00 0.00 0.00 3.21
5210 5283 5.899299 AGAGAATGCCATTATGCAAGTTTC 58.101 37.500 0.00 0.00 45.84 2.78
5227 5300 4.704057 GGTCAATGAAGGCTGAAAGAGAAT 59.296 41.667 0.00 0.00 34.07 2.40
5326 5504 6.568869 ACACAATTAGTTTTGCAAGCAGTAA 58.431 32.000 0.00 4.97 0.00 2.24
5382 5561 7.067008 AGCACAAGAGCTCTTTGTTTACTAAAA 59.933 33.333 26.44 0.00 42.18 1.52
5463 5643 3.584848 AGAGGCTGTTTCAAGGACTACAT 59.415 43.478 0.00 0.00 0.00 2.29
5623 5803 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5624 5804 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5625 5805 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5626 5806 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5627 5807 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5628 5808 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5629 5809 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5630 5810 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5634 5814 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5635 5815 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5636 5816 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5637 5817 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5638 5818 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5639 5819 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
5640 5820 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5641 5821 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5642 5822 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5643 5823 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5644 5824 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5645 5825 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5646 5826 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5647 5827 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5648 5828 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5649 5829 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5661 5841 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5662 5842 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5663 5843 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5664 5844 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5665 5845 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5666 5846 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5667 5847 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5668 5848 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5669 5849 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5670 5850 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5671 5851 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5672 5852 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5673 5853 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5674 5854 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5675 5855 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5676 5856 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5677 5857 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5678 5858 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5679 5859 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
5680 5860 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
5681 5861 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
5682 5862 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
5694 5874 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5695 5875 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5696 5876 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5697 5877 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
5698 5878 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
5699 5879 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5700 5880 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5701 5881 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5702 5882 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5703 5883 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5704 5884 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5705 5885 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5706 5886 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5707 5887 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5708 5888 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5709 5889 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5710 5890 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5711 5891 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5712 5892 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5713 5893 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5714 5894 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5715 5895 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5716 5896 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5717 5897 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5718 5898 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5719 5899 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5720 5900 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5730 5910 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5731 5911 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5732 5912 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5733 5913 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5734 5914 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5735 5915 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5736 5916 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5737 5917 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5738 5918 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5739 5919 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5740 5920 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5741 5921 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5742 5922 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5743 5923 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5744 5924 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5745 5925 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5746 5926 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5747 5927 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
5748 5928 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
5760 5940 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5763 5943 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5764 5944 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5765 5945 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5766 5946 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5772 5952 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
5773 5953 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
5774 5954 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
5775 5955 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
5776 5956 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
5788 5968 2.226674 GACACAAGAGCTAAAGGGCAAC 59.773 50.000 0.00 0.00 34.17 4.17
5789 5969 2.158682 TGACACAAGAGCTAAAGGGCAA 60.159 45.455 0.00 0.00 34.17 4.52
5790 5970 1.419762 TGACACAAGAGCTAAAGGGCA 59.580 47.619 0.00 0.00 34.17 5.36
5791 5971 2.185004 TGACACAAGAGCTAAAGGGC 57.815 50.000 0.00 0.00 0.00 5.19
5792 5972 5.712152 ATTTTGACACAAGAGCTAAAGGG 57.288 39.130 0.00 0.00 0.00 3.95
5793 5973 9.528018 TTTTAATTTTGACACAAGAGCTAAAGG 57.472 29.630 0.00 0.00 0.00 3.11
5816 5996 9.846248 GTGATCATAAACAGAAGCAAGTATTTT 57.154 29.630 0.00 0.00 0.00 1.82
5900 6080 0.397941 TGACTGGGAGAAACAGCAGG 59.602 55.000 0.00 0.00 39.55 4.85
5913 6093 1.590932 GCTACCTGCATGATGACTGG 58.409 55.000 0.00 4.08 42.31 4.00
5919 6099 0.107508 ACAAGCGCTACCTGCATGAT 60.108 50.000 12.05 0.00 43.06 2.45
6041 6221 2.791383 TTGCAGGATTGTCAAAACCG 57.209 45.000 0.00 0.00 33.54 4.44
6120 6300 8.853126 CATGGATGTTATTTCAGGTCACAATAT 58.147 33.333 0.00 0.00 0.00 1.28
6134 6314 5.410355 AGTTTGCAAGCATGGATGTTATT 57.590 34.783 16.04 0.00 0.00 1.40
6146 6327 2.099756 CCAAGGCCTATAGTTTGCAAGC 59.900 50.000 5.16 4.95 0.00 4.01
6175 6356 1.676678 CGATTCCCCGGCTCTTCTGA 61.677 60.000 0.00 0.00 0.00 3.27
6208 6389 1.292061 TAACGTGTTCTTGCGCAAGT 58.708 45.000 40.37 26.07 39.38 3.16
6301 6482 7.169476 GTGATGACTCTCTGTGTGATATCAATG 59.831 40.741 7.07 0.00 0.00 2.82
6623 6822 6.844097 ACACAAGAAACAGGTTCCTTTTTA 57.156 33.333 3.40 0.00 36.86 1.52
6637 6836 8.469200 AGAACATGATTTTCTCAACACAAGAAA 58.531 29.630 0.00 0.00 40.14 2.52
6677 6876 9.989869 GGTAAAGATAGCAAAAATTACTGAGTC 57.010 33.333 0.00 0.00 0.00 3.36
6678 6877 8.957466 GGGTAAAGATAGCAAAAATTACTGAGT 58.043 33.333 0.00 0.00 0.00 3.41
6679 6878 9.178758 AGGGTAAAGATAGCAAAAATTACTGAG 57.821 33.333 0.00 0.00 0.00 3.35
6680 6879 9.528489 AAGGGTAAAGATAGCAAAAATTACTGA 57.472 29.630 0.00 0.00 0.00 3.41
6719 6918 5.348724 GCAAGATTGAGACGATGTAGTTCAA 59.651 40.000 0.00 0.00 32.90 2.69
6749 6948 9.467258 CATATCAAACCAAATATACAAAGCAGG 57.533 33.333 0.00 0.00 0.00 4.85
6790 6993 5.163663 CCACTGTAATGTTTTATCATGGCGT 60.164 40.000 0.00 0.00 0.00 5.68
6792 6995 6.449635 TCCACTGTAATGTTTTATCATGGC 57.550 37.500 0.00 0.00 0.00 4.40
6818 7021 8.387190 TGATGATATGTCCAGATCAACATTTC 57.613 34.615 8.50 13.13 41.64 2.17
6848 7051 8.417106 ACTACACTGACATTCTAGATTATGTGG 58.583 37.037 13.58 9.17 35.24 4.17
6872 7075 7.043565 ACAAAGATTGATTTGAAGTTGCAACT 58.956 30.769 26.36 26.36 41.71 3.16
6889 7092 8.214364 AGTCTCCACTAAAAGAAGACAAAGATT 58.786 33.333 0.00 0.00 0.00 2.40
6895 7098 6.323996 TCTCAAGTCTCCACTAAAAGAAGACA 59.676 38.462 0.00 0.00 30.14 3.41
6896 7099 6.750148 TCTCAAGTCTCCACTAAAAGAAGAC 58.250 40.000 0.00 0.00 30.14 3.01
6898 7101 6.754193 ACTCTCAAGTCTCCACTAAAAGAAG 58.246 40.000 0.00 0.00 30.14 2.85
6899 7102 6.732896 ACTCTCAAGTCTCCACTAAAAGAA 57.267 37.500 0.00 0.00 30.14 2.52
6904 7107 5.241949 GTCTCAACTCTCAAGTCTCCACTAA 59.758 44.000 0.00 0.00 33.48 2.24
6906 7109 3.572255 GTCTCAACTCTCAAGTCTCCACT 59.428 47.826 0.00 0.00 33.48 4.00
6907 7110 3.305744 GGTCTCAACTCTCAAGTCTCCAC 60.306 52.174 0.00 0.00 33.48 4.02
6910 7113 5.968528 TTAGGTCTCAACTCTCAAGTCTC 57.031 43.478 0.00 0.00 33.48 3.36
6911 7114 5.777732 ACATTAGGTCTCAACTCTCAAGTCT 59.222 40.000 0.00 0.00 33.48 3.24
6949 7165 1.203994 GCAGTGGCAGAAGCATGATTT 59.796 47.619 0.00 0.00 44.61 2.17
6950 7166 0.815734 GCAGTGGCAGAAGCATGATT 59.184 50.000 0.00 0.00 44.61 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.