Multiple sequence alignment - TraesCS7B01G362200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G362200 chr7B 100.000 3385 0 0 1 3385 623978052 623974668 0.000000e+00 6252.0
1 TraesCS7B01G362200 chr7B 93.127 2386 96 36 371 2741 624149876 624147544 0.000000e+00 3435.0
2 TraesCS7B01G362200 chr7B 83.163 392 31 18 2899 3260 624147292 624146906 3.260000e-85 326.0
3 TraesCS7B01G362200 chr7B 91.489 94 8 0 2758 2851 624147477 624147384 2.740000e-26 130.0
4 TraesCS7B01G362200 chr7A 87.089 2649 179 72 708 3260 657091981 657089400 0.000000e+00 2846.0
5 TraesCS7B01G362200 chr7A 89.205 352 24 9 2 353 657092948 657092611 8.680000e-116 427.0
6 TraesCS7B01G362200 chr7A 90.987 233 12 5 469 700 657092250 657092026 4.240000e-79 305.0
7 TraesCS7B01G362200 chr7D 91.789 1291 75 16 708 1968 568393671 568392382 0.000000e+00 1768.0
8 TraesCS7B01G362200 chr7D 93.023 516 33 3 2016 2530 568392379 568391866 0.000000e+00 750.0
9 TraesCS7B01G362200 chr7D 85.395 671 45 23 2524 3177 568389003 568388369 0.000000e+00 647.0
10 TraesCS7B01G362200 chr7D 77.822 753 132 23 1665 2394 181009017 181009757 1.870000e-117 433.0
11 TraesCS7B01G362200 chr7D 93.919 148 8 1 553 700 568393862 568393716 4.400000e-54 222.0
12 TraesCS7B01G362200 chr2B 84.528 265 35 6 2139 2400 736409007 736408746 1.210000e-64 257.0
13 TraesCS7B01G362200 chr1A 74.867 565 107 21 1007 1546 541146507 541147061 1.220000e-54 224.0
14 TraesCS7B01G362200 chr1A 75.855 497 72 32 1086 1542 541399774 541399286 3.420000e-50 209.0
15 TraesCS7B01G362200 chr2D 80.347 173 18 7 542 704 161647282 161647116 2.130000e-22 117.0
16 TraesCS7B01G362200 chr4A 100.000 29 0 0 1510 1538 63812091 63812119 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G362200 chr7B 623974668 623978052 3384 True 6252.000000 6252 100.000000 1 3385 1 chr7B.!!$R1 3384
1 TraesCS7B01G362200 chr7B 624146906 624149876 2970 True 1297.000000 3435 89.259667 371 3260 3 chr7B.!!$R2 2889
2 TraesCS7B01G362200 chr7A 657089400 657092948 3548 True 1192.666667 2846 89.093667 2 3260 3 chr7A.!!$R1 3258
3 TraesCS7B01G362200 chr7D 568388369 568393862 5493 True 846.750000 1768 91.031500 553 3177 4 chr7D.!!$R1 2624
4 TraesCS7B01G362200 chr7D 181009017 181009757 740 False 433.000000 433 77.822000 1665 2394 1 chr7D.!!$F1 729
5 TraesCS7B01G362200 chr1A 541146507 541147061 554 False 224.000000 224 74.867000 1007 1546 1 chr1A.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.977395 GCTTGGTCTGGTACTCTGGT 59.023 55.0 0.0 0.0 0.0 4.00 F
1701 2086 0.609957 CATCTCCAGGCAAAGCACCA 60.610 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 2441 0.44899 CATGTGACAAGGTGCCGATG 59.551 55.0 0.00 0.0 0.0 3.84 R
3137 6556 0.03582 GTTGGAGATGTTGCCGGGTA 60.036 55.0 2.18 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.196040 GCCCCAGCTGATTTGATCA 57.804 52.632 17.39 0.00 37.76 2.92
42 43 3.293337 CCCCAGCTGATTTGATCATCAA 58.707 45.455 17.39 0.00 38.85 2.57
44 45 4.204799 CCCAGCTGATTTGATCATCAAGA 58.795 43.478 17.39 0.00 37.70 3.02
45 46 4.643334 CCCAGCTGATTTGATCATCAAGAA 59.357 41.667 17.39 0.00 37.70 2.52
57 58 8.749609 TTGATCATCAAGAACGTAAGTCCCCC 62.750 46.154 0.00 0.00 40.10 5.40
80 81 1.000359 CCCCAAAATTCCCCGCTCT 60.000 57.895 0.00 0.00 0.00 4.09
85 86 2.289565 CAAAATTCCCCGCTCTACTCC 58.710 52.381 0.00 0.00 0.00 3.85
125 126 1.672881 GGCTGAATTCGTCCAATCCAG 59.327 52.381 10.02 0.00 0.00 3.86
134 135 1.467883 CGTCCAATCCAGCGTACGTAA 60.468 52.381 17.90 0.23 0.00 3.18
137 138 2.029200 TCCAATCCAGCGTACGTAACAA 60.029 45.455 17.90 0.00 0.00 2.83
138 139 2.933906 CCAATCCAGCGTACGTAACAAT 59.066 45.455 17.90 2.02 0.00 2.71
144 145 5.409211 TCCAGCGTACGTAACAATAAATCA 58.591 37.500 17.90 0.00 0.00 2.57
155 156 5.649782 AACAATAAATCAGCTTGGTCTGG 57.350 39.130 0.00 0.00 34.91 3.86
156 157 4.666512 ACAATAAATCAGCTTGGTCTGGT 58.333 39.130 0.00 0.00 34.91 4.00
157 158 5.815581 ACAATAAATCAGCTTGGTCTGGTA 58.184 37.500 0.00 0.00 34.91 3.25
158 159 5.648092 ACAATAAATCAGCTTGGTCTGGTAC 59.352 40.000 0.00 0.00 34.91 3.34
159 160 5.700402 ATAAATCAGCTTGGTCTGGTACT 57.300 39.130 0.00 0.00 34.91 2.73
160 161 3.618690 AATCAGCTTGGTCTGGTACTC 57.381 47.619 0.00 0.00 34.91 2.59
161 162 2.310779 TCAGCTTGGTCTGGTACTCT 57.689 50.000 0.00 0.00 34.91 3.24
162 163 1.895798 TCAGCTTGGTCTGGTACTCTG 59.104 52.381 0.00 0.00 34.91 3.35
163 164 1.066573 CAGCTTGGTCTGGTACTCTGG 60.067 57.143 0.00 0.00 0.00 3.86
164 165 0.977395 GCTTGGTCTGGTACTCTGGT 59.023 55.000 0.00 0.00 0.00 4.00
165 166 1.066787 GCTTGGTCTGGTACTCTGGTC 60.067 57.143 0.00 0.00 0.00 4.02
166 167 2.530701 CTTGGTCTGGTACTCTGGTCT 58.469 52.381 0.00 0.00 0.00 3.85
167 168 1.924731 TGGTCTGGTACTCTGGTCTG 58.075 55.000 0.00 0.00 0.00 3.51
172 173 3.129638 GTCTGGTACTCTGGTCTGATGTC 59.870 52.174 0.00 0.00 0.00 3.06
175 176 4.930696 TGGTACTCTGGTCTGATGTCTTA 58.069 43.478 0.00 0.00 0.00 2.10
180 181 6.672266 ACTCTGGTCTGATGTCTTAAGAAA 57.328 37.500 6.78 1.30 0.00 2.52
186 187 6.710744 TGGTCTGATGTCTTAAGAAAAGAACC 59.289 38.462 6.78 11.10 0.00 3.62
190 191 6.755206 TGATGTCTTAAGAAAAGAACCGAGA 58.245 36.000 6.78 0.00 0.00 4.04
261 262 7.434013 TCCTTGTCTATTTCGCAAAAAGAAAAC 59.566 33.333 0.00 0.00 40.44 2.43
303 304 5.059833 GGTCTTGATTAGCTCCAGGTTATG 58.940 45.833 0.00 0.00 0.00 1.90
328 329 9.892130 TGGTCTAAATTGTTGTTTTTGGTTTAT 57.108 25.926 0.00 0.00 0.00 1.40
355 356 7.566760 TTTTTCAAGAATCTACACTGCTTCA 57.433 32.000 0.00 0.00 0.00 3.02
356 357 6.791887 TTTCAAGAATCTACACTGCTTCAG 57.208 37.500 0.00 0.00 37.52 3.02
357 358 4.248859 TCAAGAATCTACACTGCTTCAGC 58.751 43.478 0.00 0.00 42.50 4.26
381 642 6.581166 GCACGTTTAATTTTCCCAAACTCTAG 59.419 38.462 0.00 0.00 31.47 2.43
383 644 6.090783 CGTTTAATTTTCCCAAACTCTAGCC 58.909 40.000 0.00 0.00 31.47 3.93
386 647 3.825908 TTTTCCCAAACTCTAGCCCAT 57.174 42.857 0.00 0.00 0.00 4.00
387 648 4.938575 TTTTCCCAAACTCTAGCCCATA 57.061 40.909 0.00 0.00 0.00 2.74
388 649 3.926058 TTCCCAAACTCTAGCCCATAC 57.074 47.619 0.00 0.00 0.00 2.39
389 650 2.840511 TCCCAAACTCTAGCCCATACA 58.159 47.619 0.00 0.00 0.00 2.29
390 651 2.771943 TCCCAAACTCTAGCCCATACAG 59.228 50.000 0.00 0.00 0.00 2.74
399 667 7.857404 ACTCTAGCCCATACAGTACATAATT 57.143 36.000 0.00 0.00 0.00 1.40
466 735 3.685836 AAAACGAACAGTAGTTGGCAC 57.314 42.857 0.00 0.00 38.30 5.01
467 736 2.319136 AACGAACAGTAGTTGGCACA 57.681 45.000 0.00 0.00 38.30 4.57
547 832 6.493115 ACCCATGTATGTTCAATTGTTCAGAA 59.507 34.615 5.13 0.00 0.00 3.02
555 840 7.137490 TGTTCAATTGTTCAGAATCTAGCAG 57.863 36.000 5.13 0.00 0.00 4.24
1643 2021 5.975693 GGTTAACCACCTGATTTCATTCA 57.024 39.130 20.12 0.00 43.29 2.57
1644 2022 5.954335 GGTTAACCACCTGATTTCATTCAG 58.046 41.667 20.12 0.00 43.29 3.02
1701 2086 0.609957 CATCTCCAGGCAAAGCACCA 60.610 55.000 0.00 0.00 0.00 4.17
1717 2102 1.335132 ACCACTGGACTGGAACACGT 61.335 55.000 0.71 0.00 35.04 4.49
1800 2185 1.588674 ACCGATGCGTCAAAAGTTCA 58.411 45.000 6.75 0.00 0.00 3.18
1812 2197 5.504665 CGTCAAAAGTTCAGACATCTTGCTT 60.505 40.000 7.99 0.00 32.68 3.91
1910 2316 2.756760 TGAGGACGACATTGGGTACTAC 59.243 50.000 0.00 0.00 0.00 2.73
1963 2369 1.667151 CCGGGGTCGAGTGTTTACA 59.333 57.895 0.00 0.00 39.00 2.41
1971 2377 1.338973 TCGAGTGTTTACAGCTTCGGT 59.661 47.619 0.80 0.00 0.00 4.69
2017 2423 2.796193 CGGAGGGCCATCGATCACA 61.796 63.158 11.98 0.00 0.00 3.58
2029 2435 1.609239 GATCACACCCAGGATGCCA 59.391 57.895 0.00 0.00 31.97 4.92
2035 2441 2.203451 CCCAGGATGCCATGGAGC 60.203 66.667 18.40 0.45 39.02 4.70
2169 2579 0.107214 GGATCAGGCCCGAACAATGA 60.107 55.000 0.00 0.00 0.00 2.57
2186 2596 0.615331 TGATGAAGGACAGGAGCCAC 59.385 55.000 0.00 0.00 0.00 5.01
2272 2688 0.317020 GAAGTTGCTTCGGTGTGCAC 60.317 55.000 10.75 10.75 39.05 4.57
2297 2714 0.616891 ACAGTCATGCCATGAGAGCA 59.383 50.000 7.83 0.00 45.94 4.26
2327 2744 2.502080 GTCGTCACGGCTCTGTCG 60.502 66.667 0.00 0.00 36.42 4.35
2375 2792 3.604129 ATCATCACACCACGCGGCA 62.604 57.895 12.47 0.00 34.57 5.69
2465 2890 0.249120 TGCTATGAACTGTGACCGGG 59.751 55.000 6.32 0.00 0.00 5.73
2536 5830 4.467082 TGGCCTGCATGATTAAGAATGTTT 59.533 37.500 3.32 0.00 0.00 2.83
2563 5857 3.678056 CACTCCTGTGTAACTGCCTAA 57.322 47.619 0.00 0.00 39.24 2.69
2564 5858 3.326747 CACTCCTGTGTAACTGCCTAAC 58.673 50.000 0.00 0.00 39.24 2.34
2565 5859 3.006967 CACTCCTGTGTAACTGCCTAACT 59.993 47.826 0.00 0.00 39.24 2.24
2566 5860 3.006967 ACTCCTGTGTAACTGCCTAACTG 59.993 47.826 0.00 0.00 38.04 3.16
2627 5921 1.386772 TTGGTTCCAGGGGTGGAGT 60.387 57.895 0.00 0.00 39.43 3.85
2635 5930 0.322975 CAGGGGTGGAGTGAAGTCAG 59.677 60.000 0.00 0.00 0.00 3.51
2698 5993 6.258727 CGCATTATCAAGGCCCATATTACTAG 59.741 42.308 0.00 0.00 34.04 2.57
2729 6024 4.687901 AAATAATTATGCAGGCAACCCC 57.312 40.909 0.00 0.00 37.17 4.95
2730 6025 2.836636 TAATTATGCAGGCAACCCCA 57.163 45.000 0.00 0.00 35.39 4.96
2732 6027 2.179377 ATTATGCAGGCAACCCCATT 57.821 45.000 0.00 0.00 35.39 3.16
2745 6053 5.296035 GGCAACCCCATTTATATATAGACGC 59.704 44.000 0.00 0.00 0.00 5.19
2787 6130 9.739276 ATCCTCAAAACTAACAATATCAAGTGA 57.261 29.630 0.00 0.00 0.00 3.41
2788 6131 9.567776 TCCTCAAAACTAACAATATCAAGTGAA 57.432 29.630 0.00 0.00 0.00 3.18
2897 6267 4.421058 CTGAATGTTGAATGCACCATCTG 58.579 43.478 0.00 0.00 0.00 2.90
2935 6326 5.975344 CCATTTCTGACCGATGAATTGATTG 59.025 40.000 0.00 0.00 0.00 2.67
2938 6329 2.023673 TGACCGATGAATTGATTGGGC 58.976 47.619 14.90 12.62 35.57 5.36
3119 6538 5.337578 TTCAACCAGAAAAGGGAACAAAG 57.662 39.130 0.00 0.00 32.05 2.77
3135 6554 4.665833 ACAAAGAAACCAAAAGGCCTAC 57.334 40.909 5.16 0.00 0.00 3.18
3136 6555 3.386726 ACAAAGAAACCAAAAGGCCTACC 59.613 43.478 5.16 0.00 0.00 3.18
3165 6584 3.405831 CAACATCTCCAACTCTGCTCAA 58.594 45.455 0.00 0.00 0.00 3.02
3179 6598 1.308783 GCTCAAAGCCACACCCTAGC 61.309 60.000 0.00 0.00 34.48 3.42
3180 6599 0.036732 CTCAAAGCCACACCCTAGCA 59.963 55.000 0.00 0.00 0.00 3.49
3184 6603 0.478507 AAGCCACACCCTAGCAAAGT 59.521 50.000 0.00 0.00 0.00 2.66
3185 6604 0.478507 AGCCACACCCTAGCAAAGTT 59.521 50.000 0.00 0.00 0.00 2.66
3186 6605 0.598065 GCCACACCCTAGCAAAGTTG 59.402 55.000 0.00 0.00 0.00 3.16
3194 6624 5.473504 ACACCCTAGCAAAGTTGAATTAGTG 59.526 40.000 0.00 0.00 0.00 2.74
3219 6649 3.006859 TGACAGAGCCGAGAATTTTGAGA 59.993 43.478 0.00 0.00 0.00 3.27
3235 6667 5.906113 TTTGAGACAGGCTTACAAAAACA 57.094 34.783 0.00 0.00 0.00 2.83
3250 6682 4.240096 CAAAAACATGACATCCAGAAGCC 58.760 43.478 0.00 0.00 0.00 4.35
3257 6689 2.117156 CATCCAGAAGCCAAGCCCG 61.117 63.158 0.00 0.00 0.00 6.13
3260 6692 2.042831 CCAGAAGCCAAGCCCGAAG 61.043 63.158 0.00 0.00 0.00 3.79
3261 6693 2.360475 AGAAGCCAAGCCCGAAGC 60.360 61.111 0.00 0.00 44.25 3.86
3295 6727 6.662414 TGACAGCAGAATACGATTTTAAGG 57.338 37.500 0.00 0.00 0.00 2.69
3296 6728 5.064707 TGACAGCAGAATACGATTTTAAGGC 59.935 40.000 0.00 0.00 0.00 4.35
3297 6729 5.186198 ACAGCAGAATACGATTTTAAGGCT 58.814 37.500 0.00 0.00 0.00 4.58
3298 6730 5.294552 ACAGCAGAATACGATTTTAAGGCTC 59.705 40.000 0.00 0.00 0.00 4.70
3299 6731 5.525378 CAGCAGAATACGATTTTAAGGCTCT 59.475 40.000 0.00 0.00 0.00 4.09
3300 6732 5.525378 AGCAGAATACGATTTTAAGGCTCTG 59.475 40.000 0.00 0.00 0.00 3.35
3301 6733 5.523916 GCAGAATACGATTTTAAGGCTCTGA 59.476 40.000 0.00 0.00 31.49 3.27
3302 6734 6.203723 GCAGAATACGATTTTAAGGCTCTGAT 59.796 38.462 0.00 0.00 31.49 2.90
3303 6735 7.570324 GCAGAATACGATTTTAAGGCTCTGATC 60.570 40.741 0.00 0.00 31.49 2.92
3304 6736 7.655328 CAGAATACGATTTTAAGGCTCTGATCT 59.345 37.037 0.00 0.00 31.49 2.75
3305 6737 7.870445 AGAATACGATTTTAAGGCTCTGATCTC 59.130 37.037 0.00 0.00 0.00 2.75
3306 6738 4.698575 ACGATTTTAAGGCTCTGATCTCC 58.301 43.478 0.00 0.00 0.00 3.71
3307 6739 4.061596 CGATTTTAAGGCTCTGATCTCCC 58.938 47.826 0.00 0.00 0.00 4.30
3308 6740 4.202305 CGATTTTAAGGCTCTGATCTCCCT 60.202 45.833 0.00 0.00 0.00 4.20
3309 6741 4.762289 TTTTAAGGCTCTGATCTCCCTC 57.238 45.455 0.00 0.00 0.00 4.30
3310 6742 3.404869 TTAAGGCTCTGATCTCCCTCA 57.595 47.619 0.00 0.00 0.00 3.86
3311 6743 1.494960 AAGGCTCTGATCTCCCTCAC 58.505 55.000 0.00 0.00 0.00 3.51
3312 6744 0.337773 AGGCTCTGATCTCCCTCACA 59.662 55.000 0.00 0.00 0.00 3.58
3313 6745 1.198713 GGCTCTGATCTCCCTCACAA 58.801 55.000 0.00 0.00 0.00 3.33
3314 6746 1.134551 GGCTCTGATCTCCCTCACAAC 60.135 57.143 0.00 0.00 0.00 3.32
3315 6747 1.134551 GCTCTGATCTCCCTCACAACC 60.135 57.143 0.00 0.00 0.00 3.77
3316 6748 2.465813 CTCTGATCTCCCTCACAACCT 58.534 52.381 0.00 0.00 0.00 3.50
3317 6749 2.168106 CTCTGATCTCCCTCACAACCTG 59.832 54.545 0.00 0.00 0.00 4.00
3318 6750 2.182827 CTGATCTCCCTCACAACCTGA 58.817 52.381 0.00 0.00 0.00 3.86
3319 6751 1.902508 TGATCTCCCTCACAACCTGAC 59.097 52.381 0.00 0.00 0.00 3.51
3320 6752 1.902508 GATCTCCCTCACAACCTGACA 59.097 52.381 0.00 0.00 0.00 3.58
3321 6753 1.342074 TCTCCCTCACAACCTGACAG 58.658 55.000 0.00 0.00 0.00 3.51
3322 6754 1.133167 TCTCCCTCACAACCTGACAGA 60.133 52.381 3.32 0.00 0.00 3.41
3323 6755 1.694150 CTCCCTCACAACCTGACAGAA 59.306 52.381 3.32 0.00 0.00 3.02
3324 6756 1.416401 TCCCTCACAACCTGACAGAAC 59.584 52.381 3.32 0.00 0.00 3.01
3325 6757 1.140852 CCCTCACAACCTGACAGAACA 59.859 52.381 3.32 0.00 0.00 3.18
3326 6758 2.487934 CCTCACAACCTGACAGAACAG 58.512 52.381 3.32 0.00 37.61 3.16
3327 6759 1.869767 CTCACAACCTGACAGAACAGC 59.130 52.381 3.32 0.00 36.67 4.40
3328 6760 0.947244 CACAACCTGACAGAACAGCC 59.053 55.000 3.32 0.00 36.67 4.85
3329 6761 0.179018 ACAACCTGACAGAACAGCCC 60.179 55.000 3.32 0.00 36.67 5.19
3330 6762 0.179020 CAACCTGACAGAACAGCCCA 60.179 55.000 3.32 0.00 36.67 5.36
3331 6763 0.550914 AACCTGACAGAACAGCCCAA 59.449 50.000 3.32 0.00 36.67 4.12
3332 6764 0.550914 ACCTGACAGAACAGCCCAAA 59.449 50.000 3.32 0.00 36.67 3.28
3333 6765 1.064017 ACCTGACAGAACAGCCCAAAA 60.064 47.619 3.32 0.00 36.67 2.44
3334 6766 2.242043 CCTGACAGAACAGCCCAAAAT 58.758 47.619 3.32 0.00 36.67 1.82
3335 6767 2.229784 CCTGACAGAACAGCCCAAAATC 59.770 50.000 3.32 0.00 36.67 2.17
3336 6768 2.229784 CTGACAGAACAGCCCAAAATCC 59.770 50.000 0.00 0.00 0.00 3.01
3337 6769 2.158475 TGACAGAACAGCCCAAAATCCT 60.158 45.455 0.00 0.00 0.00 3.24
3338 6770 2.489722 GACAGAACAGCCCAAAATCCTC 59.510 50.000 0.00 0.00 0.00 3.71
3339 6771 2.158475 ACAGAACAGCCCAAAATCCTCA 60.158 45.455 0.00 0.00 0.00 3.86
3340 6772 2.892852 CAGAACAGCCCAAAATCCTCAA 59.107 45.455 0.00 0.00 0.00 3.02
3341 6773 2.893489 AGAACAGCCCAAAATCCTCAAC 59.107 45.455 0.00 0.00 0.00 3.18
3342 6774 1.247567 ACAGCCCAAAATCCTCAACG 58.752 50.000 0.00 0.00 0.00 4.10
3343 6775 1.202879 ACAGCCCAAAATCCTCAACGA 60.203 47.619 0.00 0.00 0.00 3.85
3344 6776 2.094675 CAGCCCAAAATCCTCAACGAT 58.905 47.619 0.00 0.00 0.00 3.73
3345 6777 2.493278 CAGCCCAAAATCCTCAACGATT 59.507 45.455 0.00 0.00 33.84 3.34
3346 6778 2.755103 AGCCCAAAATCCTCAACGATTC 59.245 45.455 0.00 0.00 31.14 2.52
3347 6779 2.491693 GCCCAAAATCCTCAACGATTCA 59.508 45.455 0.00 0.00 31.14 2.57
3348 6780 3.673323 GCCCAAAATCCTCAACGATTCAC 60.673 47.826 0.00 0.00 31.14 3.18
3349 6781 3.758554 CCCAAAATCCTCAACGATTCACT 59.241 43.478 0.00 0.00 31.14 3.41
3350 6782 4.142600 CCCAAAATCCTCAACGATTCACTC 60.143 45.833 0.00 0.00 31.14 3.51
3351 6783 4.455533 CCAAAATCCTCAACGATTCACTCA 59.544 41.667 0.00 0.00 31.14 3.41
3352 6784 5.048782 CCAAAATCCTCAACGATTCACTCAA 60.049 40.000 0.00 0.00 31.14 3.02
3353 6785 6.437928 CAAAATCCTCAACGATTCACTCAAA 58.562 36.000 0.00 0.00 31.14 2.69
3354 6786 6.824305 AAATCCTCAACGATTCACTCAAAT 57.176 33.333 0.00 0.00 31.14 2.32
3355 6787 5.808042 ATCCTCAACGATTCACTCAAATG 57.192 39.130 0.00 0.00 0.00 2.32
3356 6788 4.893608 TCCTCAACGATTCACTCAAATGA 58.106 39.130 0.00 0.00 0.00 2.57
3357 6789 4.690748 TCCTCAACGATTCACTCAAATGAC 59.309 41.667 0.00 0.00 0.00 3.06
3358 6790 4.452114 CCTCAACGATTCACTCAAATGACA 59.548 41.667 0.00 0.00 0.00 3.58
3359 6791 5.390251 CCTCAACGATTCACTCAAATGACAG 60.390 44.000 0.00 0.00 0.00 3.51
3360 6792 4.452114 TCAACGATTCACTCAAATGACAGG 59.548 41.667 0.00 0.00 0.00 4.00
3361 6793 4.271696 ACGATTCACTCAAATGACAGGA 57.728 40.909 0.00 0.00 0.00 3.86
3362 6794 4.836825 ACGATTCACTCAAATGACAGGAT 58.163 39.130 0.00 0.00 0.00 3.24
3363 6795 5.977635 ACGATTCACTCAAATGACAGGATA 58.022 37.500 0.00 0.00 0.00 2.59
3364 6796 6.045318 ACGATTCACTCAAATGACAGGATAG 58.955 40.000 0.00 0.00 0.00 2.08
3365 6797 5.050499 CGATTCACTCAAATGACAGGATAGC 60.050 44.000 0.00 0.00 0.00 2.97
3366 6798 5.426689 TTCACTCAAATGACAGGATAGCT 57.573 39.130 0.00 0.00 0.00 3.32
3367 6799 4.763073 TCACTCAAATGACAGGATAGCTG 58.237 43.478 0.00 0.00 0.00 4.24
3368 6800 4.223700 TCACTCAAATGACAGGATAGCTGT 59.776 41.667 0.00 0.00 37.81 4.40
3369 6801 5.422012 TCACTCAAATGACAGGATAGCTGTA 59.578 40.000 0.00 0.00 34.88 2.74
3370 6802 5.752472 CACTCAAATGACAGGATAGCTGTAG 59.248 44.000 0.00 0.00 34.88 2.74
3371 6803 5.163364 ACTCAAATGACAGGATAGCTGTAGG 60.163 44.000 0.00 0.00 34.88 3.18
3372 6804 3.760580 AATGACAGGATAGCTGTAGGC 57.239 47.619 0.00 0.00 42.19 3.93
3381 6813 3.207354 GCTGTAGGCTGTAGCGGA 58.793 61.111 8.70 0.00 43.26 5.54
3382 6814 1.066587 GCTGTAGGCTGTAGCGGAG 59.933 63.158 8.70 0.00 43.26 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203126 CTGGGCCTTGGATCGAGC 60.203 66.667 4.53 0.00 0.00 5.03
26 27 5.227238 ACGTTCTTGATGATCAAATCAGC 57.773 39.130 9.39 0.00 45.45 4.26
38 39 2.262637 TGGGGGACTTACGTTCTTGAT 58.737 47.619 0.00 0.00 0.00 2.57
42 43 2.487805 GGTTTTGGGGGACTTACGTTCT 60.488 50.000 0.00 0.00 0.00 3.01
44 45 1.479205 GGGTTTTGGGGGACTTACGTT 60.479 52.381 0.00 0.00 0.00 3.99
45 46 0.111061 GGGTTTTGGGGGACTTACGT 59.889 55.000 0.00 0.00 0.00 3.57
57 58 1.880221 GCGGGGAATTTTGGGGTTTTG 60.880 52.381 0.00 0.00 0.00 2.44
61 62 1.304962 GAGCGGGGAATTTTGGGGT 60.305 57.895 0.00 0.00 0.00 4.95
80 81 2.039879 GTGCTGAAGAAAAGGGGGAGTA 59.960 50.000 0.00 0.00 0.00 2.59
85 86 0.890996 AGCGTGCTGAAGAAAAGGGG 60.891 55.000 0.00 0.00 0.00 4.79
125 126 5.385396 AGCTGATTTATTGTTACGTACGC 57.615 39.130 16.72 0.00 0.00 4.42
134 135 4.666512 ACCAGACCAAGCTGATTTATTGT 58.333 39.130 0.00 0.00 38.14 2.71
137 138 5.426833 AGAGTACCAGACCAAGCTGATTTAT 59.573 40.000 0.00 0.00 38.14 1.40
138 139 4.777896 AGAGTACCAGACCAAGCTGATTTA 59.222 41.667 0.00 0.00 38.14 1.40
144 145 1.270907 CCAGAGTACCAGACCAAGCT 58.729 55.000 0.00 0.00 0.00 3.74
155 156 6.761099 TCTTAAGACATCAGACCAGAGTAC 57.239 41.667 0.00 0.00 0.00 2.73
156 157 7.776618 TTTCTTAAGACATCAGACCAGAGTA 57.223 36.000 4.18 0.00 0.00 2.59
157 158 6.672266 TTTCTTAAGACATCAGACCAGAGT 57.328 37.500 4.18 0.00 0.00 3.24
158 159 7.382110 TCTTTTCTTAAGACATCAGACCAGAG 58.618 38.462 4.18 0.00 0.00 3.35
159 160 7.303182 TCTTTTCTTAAGACATCAGACCAGA 57.697 36.000 4.18 0.00 0.00 3.86
160 161 7.095017 GGTTCTTTTCTTAAGACATCAGACCAG 60.095 40.741 4.18 0.00 0.00 4.00
161 162 6.710744 GGTTCTTTTCTTAAGACATCAGACCA 59.289 38.462 4.18 0.00 0.00 4.02
162 163 6.128526 CGGTTCTTTTCTTAAGACATCAGACC 60.129 42.308 4.18 8.51 0.00 3.85
163 164 6.645415 TCGGTTCTTTTCTTAAGACATCAGAC 59.355 38.462 4.18 0.62 0.00 3.51
164 165 6.755206 TCGGTTCTTTTCTTAAGACATCAGA 58.245 36.000 4.18 1.64 0.00 3.27
165 166 6.868864 TCTCGGTTCTTTTCTTAAGACATCAG 59.131 38.462 4.18 0.00 0.00 2.90
166 167 6.755206 TCTCGGTTCTTTTCTTAAGACATCA 58.245 36.000 4.18 0.00 0.00 3.07
167 168 6.869388 ACTCTCGGTTCTTTTCTTAAGACATC 59.131 38.462 4.18 0.00 0.00 3.06
172 173 4.152580 GCCACTCTCGGTTCTTTTCTTAAG 59.847 45.833 0.00 0.00 0.00 1.85
175 176 2.104963 AGCCACTCTCGGTTCTTTTCTT 59.895 45.455 0.00 0.00 0.00 2.52
180 181 0.605589 CTCAGCCACTCTCGGTTCTT 59.394 55.000 0.00 0.00 0.00 2.52
186 187 1.387539 TCAGATCTCAGCCACTCTCG 58.612 55.000 0.00 0.00 0.00 4.04
190 191 3.326006 TCAGTTTTCAGATCTCAGCCACT 59.674 43.478 0.00 0.00 0.00 4.00
240 241 6.143919 CCCTGTTTTCTTTTTGCGAAATAGAC 59.856 38.462 0.00 0.00 31.17 2.59
242 243 6.212955 TCCCTGTTTTCTTTTTGCGAAATAG 58.787 36.000 0.00 1.65 31.17 1.73
261 262 0.609662 CAAAACCTGCCCAATCCCTG 59.390 55.000 0.00 0.00 0.00 4.45
353 354 4.920640 TTGGGAAAATTAAACGTGCTGA 57.079 36.364 0.00 0.00 0.00 4.26
355 356 5.068591 AGAGTTTGGGAAAATTAAACGTGCT 59.931 36.000 0.00 0.00 38.84 4.40
356 357 5.286438 AGAGTTTGGGAAAATTAAACGTGC 58.714 37.500 0.00 0.00 38.84 5.34
357 358 6.581166 GCTAGAGTTTGGGAAAATTAAACGTG 59.419 38.462 0.00 0.00 38.84 4.49
358 359 6.294342 GGCTAGAGTTTGGGAAAATTAAACGT 60.294 38.462 0.00 0.00 38.84 3.99
359 360 6.090783 GGCTAGAGTTTGGGAAAATTAAACG 58.909 40.000 0.00 0.00 38.84 3.60
360 361 6.014925 TGGGCTAGAGTTTGGGAAAATTAAAC 60.015 38.462 0.00 0.00 35.19 2.01
361 362 6.078664 TGGGCTAGAGTTTGGGAAAATTAAA 58.921 36.000 0.00 0.00 0.00 1.52
362 363 5.646215 TGGGCTAGAGTTTGGGAAAATTAA 58.354 37.500 0.00 0.00 0.00 1.40
363 364 5.263872 TGGGCTAGAGTTTGGGAAAATTA 57.736 39.130 0.00 0.00 0.00 1.40
364 365 4.126520 TGGGCTAGAGTTTGGGAAAATT 57.873 40.909 0.00 0.00 0.00 1.82
365 366 3.825908 TGGGCTAGAGTTTGGGAAAAT 57.174 42.857 0.00 0.00 0.00 1.82
366 367 3.825908 ATGGGCTAGAGTTTGGGAAAA 57.174 42.857 0.00 0.00 0.00 2.29
368 369 3.186283 TGTATGGGCTAGAGTTTGGGAA 58.814 45.455 0.00 0.00 0.00 3.97
369 370 2.771943 CTGTATGGGCTAGAGTTTGGGA 59.228 50.000 0.00 0.00 0.00 4.37
381 642 8.404107 ACCATTAAATTATGTACTGTATGGGC 57.596 34.615 0.00 0.00 35.47 5.36
449 718 1.411246 TCTGTGCCAACTACTGTTCGT 59.589 47.619 0.00 0.00 33.52 3.85
450 719 2.148916 TCTGTGCCAACTACTGTTCG 57.851 50.000 0.00 0.00 33.52 3.95
451 720 4.822026 ACTATCTGTGCCAACTACTGTTC 58.178 43.478 0.00 0.00 33.52 3.18
452 721 4.891992 ACTATCTGTGCCAACTACTGTT 57.108 40.909 0.00 0.00 36.75 3.16
453 722 4.891992 AACTATCTGTGCCAACTACTGT 57.108 40.909 0.00 0.00 0.00 3.55
454 723 6.573434 TGATAACTATCTGTGCCAACTACTG 58.427 40.000 0.00 0.00 33.88 2.74
455 724 6.791867 TGATAACTATCTGTGCCAACTACT 57.208 37.500 0.00 0.00 33.88 2.57
456 725 7.169982 GTGATGATAACTATCTGTGCCAACTAC 59.830 40.741 0.00 0.00 33.88 2.73
457 726 7.210174 GTGATGATAACTATCTGTGCCAACTA 58.790 38.462 0.00 0.00 33.88 2.24
458 727 6.051717 GTGATGATAACTATCTGTGCCAACT 58.948 40.000 0.00 0.00 33.88 3.16
459 728 5.050769 CGTGATGATAACTATCTGTGCCAAC 60.051 44.000 0.00 0.00 33.88 3.77
460 729 5.049828 CGTGATGATAACTATCTGTGCCAA 58.950 41.667 0.00 0.00 33.88 4.52
461 730 4.099419 ACGTGATGATAACTATCTGTGCCA 59.901 41.667 0.00 0.00 33.88 4.92
462 731 4.621991 ACGTGATGATAACTATCTGTGCC 58.378 43.478 0.00 0.00 33.88 5.01
463 732 5.980116 AGAACGTGATGATAACTATCTGTGC 59.020 40.000 0.00 0.00 33.88 4.57
464 733 7.196331 TGAGAACGTGATGATAACTATCTGTG 58.804 38.462 0.00 0.00 33.88 3.66
465 734 7.334844 TGAGAACGTGATGATAACTATCTGT 57.665 36.000 0.00 0.00 33.88 3.41
466 735 8.634475 TTTGAGAACGTGATGATAACTATCTG 57.366 34.615 0.00 0.00 33.88 2.90
508 793 7.520798 ACATACATGGGTGATGATAAGTTGAT 58.479 34.615 0.00 0.00 35.80 2.57
509 794 6.899089 ACATACATGGGTGATGATAAGTTGA 58.101 36.000 0.00 0.00 35.80 3.18
510 795 7.282901 TGAACATACATGGGTGATGATAAGTTG 59.717 37.037 0.00 0.00 35.80 3.16
511 796 7.345691 TGAACATACATGGGTGATGATAAGTT 58.654 34.615 0.00 0.00 35.80 2.66
512 797 6.899089 TGAACATACATGGGTGATGATAAGT 58.101 36.000 0.00 0.00 35.80 2.24
513 798 7.806409 TTGAACATACATGGGTGATGATAAG 57.194 36.000 0.00 0.00 35.80 1.73
515 800 7.779326 ACAATTGAACATACATGGGTGATGATA 59.221 33.333 13.59 0.00 35.80 2.15
547 832 3.008375 TGAACTTGGCTCAACTGCTAGAT 59.992 43.478 0.00 0.00 0.00 1.98
551 836 1.141657 TCTGAACTTGGCTCAACTGCT 59.858 47.619 0.00 0.00 0.00 4.24
555 840 4.836125 TCATTTCTGAACTTGGCTCAAC 57.164 40.909 0.00 0.00 0.00 3.18
1663 2045 5.672503 AGATGAATCTGATGGTCACAAGAG 58.327 41.667 0.00 0.00 35.42 2.85
1701 2086 1.046472 TCCACGTGTTCCAGTCCAGT 61.046 55.000 15.65 0.00 0.00 4.00
1717 2102 2.405805 CGGCGGCAATGTTCATCCA 61.406 57.895 10.53 0.00 0.00 3.41
1800 2185 1.066573 CCGTCTCCAAGCAAGATGTCT 60.067 52.381 0.00 0.00 0.00 3.41
1812 2197 2.682494 GGGTGGTAGCCGTCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
1854 2239 2.110967 CCAGCCCTTGTCATGCTCG 61.111 63.158 0.00 0.00 31.77 5.03
1890 2296 2.223433 CGTAGTACCCAATGTCGTCCTC 60.223 54.545 0.00 0.00 0.00 3.71
1963 2369 2.356313 CAGCACGACACCGAAGCT 60.356 61.111 0.00 0.00 45.62 3.74
1971 2377 1.079612 CATCTCCAGCAGCACGACA 60.080 57.895 0.00 0.00 0.00 4.35
2017 2423 3.065787 GCTCCATGGCATCCTGGGT 62.066 63.158 6.96 0.00 33.13 4.51
2035 2441 0.448990 CATGTGACAAGGTGCCGATG 59.551 55.000 0.00 0.00 0.00 3.84
2169 2579 1.280421 GAAGTGGCTCCTGTCCTTCAT 59.720 52.381 0.00 0.00 33.43 2.57
2210 2626 2.041976 CGGATATCGTCCCTGCAGT 58.958 57.895 13.81 0.00 44.77 4.40
2272 2688 1.078214 ATGGCATGACTGTCGTGGG 60.078 57.895 26.40 7.43 34.08 4.61
2465 2890 6.129457 GCAACGATCACAAACACAACTTATTC 60.129 38.462 0.00 0.00 0.00 1.75
2559 5853 3.378427 GCAATTAACCTCTGCCAGTTAGG 59.622 47.826 0.00 0.00 41.84 2.69
2560 5854 4.622701 GCAATTAACCTCTGCCAGTTAG 57.377 45.455 0.00 0.00 30.57 2.34
2585 5879 4.281688 CACAATTTCCAAATCCACCACTCT 59.718 41.667 0.00 0.00 0.00 3.24
2627 5921 2.634453 TCTTGCTCATGTCCTGACTTCA 59.366 45.455 0.00 0.00 0.00 3.02
2635 5930 1.003580 TCCTGGTTCTTGCTCATGTCC 59.996 52.381 0.00 0.00 0.00 4.02
2698 5993 8.364142 TGCCTGCATAATTATTTATGTTTACCC 58.636 33.333 15.34 2.95 44.37 3.69
2728 6023 5.005394 GTGCACCGCGTCTATATATAAATGG 59.995 44.000 5.22 0.00 0.00 3.16
2729 6024 5.005394 GGTGCACCGCGTCTATATATAAATG 59.995 44.000 22.49 0.00 0.00 2.32
2730 6025 5.107133 GGTGCACCGCGTCTATATATAAAT 58.893 41.667 22.49 0.00 0.00 1.40
2732 6027 3.506844 TGGTGCACCGCGTCTATATATAA 59.493 43.478 30.07 4.97 39.43 0.98
2745 6053 1.299541 GGATACTCAATGGTGCACCG 58.700 55.000 30.07 17.94 39.43 4.94
2897 6267 0.601057 AAATGGTAAGGCGTTGTGGC 59.399 50.000 0.97 0.00 45.27 5.01
2935 6326 2.163613 CAGTTCAAGTTTAATCCCGCCC 59.836 50.000 0.00 0.00 0.00 6.13
2938 6329 6.500041 TGTTTTCAGTTCAAGTTTAATCCCG 58.500 36.000 0.00 0.00 0.00 5.14
3062 6468 9.515226 AGCACACTAGGTATTTTCTTTGAAATA 57.485 29.630 0.00 0.00 31.96 1.40
3119 6538 3.087031 GGTAGGTAGGCCTTTTGGTTTC 58.913 50.000 12.58 0.00 44.18 2.78
3135 6554 1.146263 GGAGATGTTGCCGGGTAGG 59.854 63.158 2.18 0.00 44.97 3.18
3136 6555 0.251916 TTGGAGATGTTGCCGGGTAG 59.748 55.000 2.18 0.00 0.00 3.18
3137 6556 0.035820 GTTGGAGATGTTGCCGGGTA 60.036 55.000 2.18 0.00 0.00 3.69
3138 6557 1.303317 GTTGGAGATGTTGCCGGGT 60.303 57.895 2.18 0.00 0.00 5.28
3165 6584 0.478507 ACTTTGCTAGGGTGTGGCTT 59.521 50.000 0.00 0.00 32.67 4.35
3179 6598 7.482654 TCTGTCACTCACTAATTCAACTTTG 57.517 36.000 0.00 0.00 0.00 2.77
3180 6599 6.203723 GCTCTGTCACTCACTAATTCAACTTT 59.796 38.462 0.00 0.00 0.00 2.66
3184 6603 4.569943 GGCTCTGTCACTCACTAATTCAA 58.430 43.478 0.00 0.00 0.00 2.69
3185 6604 3.367395 CGGCTCTGTCACTCACTAATTCA 60.367 47.826 0.00 0.00 0.00 2.57
3186 6605 3.119459 TCGGCTCTGTCACTCACTAATTC 60.119 47.826 0.00 0.00 0.00 2.17
3194 6624 2.663826 AATTCTCGGCTCTGTCACTC 57.336 50.000 0.00 0.00 0.00 3.51
3219 6649 5.278957 GGATGTCATGTTTTTGTAAGCCTGT 60.279 40.000 0.00 0.00 0.00 4.00
3235 6667 1.684248 GGCTTGGCTTCTGGATGTCAT 60.684 52.381 0.00 0.00 0.00 3.06
3257 6689 1.951631 GTCATAGCGGAGGCGCTTC 60.952 63.158 11.69 11.69 43.30 3.86
3260 6692 2.659897 CTGTCATAGCGGAGGCGC 60.660 66.667 0.00 0.00 46.35 6.53
3261 6693 2.659897 GCTGTCATAGCGGAGGCG 60.660 66.667 0.00 0.00 43.63 5.52
3269 6701 8.491152 CCTTAAAATCGTATTCTGCTGTCATAG 58.509 37.037 0.00 0.00 0.00 2.23
3270 6702 7.042051 GCCTTAAAATCGTATTCTGCTGTCATA 60.042 37.037 0.00 0.00 0.00 2.15
3271 6703 6.238484 GCCTTAAAATCGTATTCTGCTGTCAT 60.238 38.462 0.00 0.00 0.00 3.06
3272 6704 5.064707 GCCTTAAAATCGTATTCTGCTGTCA 59.935 40.000 0.00 0.00 0.00 3.58
3273 6705 5.294552 AGCCTTAAAATCGTATTCTGCTGTC 59.705 40.000 0.00 0.00 0.00 3.51
3274 6706 5.186198 AGCCTTAAAATCGTATTCTGCTGT 58.814 37.500 0.00 0.00 0.00 4.40
3275 6707 5.525378 AGAGCCTTAAAATCGTATTCTGCTG 59.475 40.000 0.00 0.00 0.00 4.41
3276 6708 5.525378 CAGAGCCTTAAAATCGTATTCTGCT 59.475 40.000 0.00 0.00 0.00 4.24
3277 6709 5.523916 TCAGAGCCTTAAAATCGTATTCTGC 59.476 40.000 0.00 0.00 31.90 4.26
3278 6710 7.655328 AGATCAGAGCCTTAAAATCGTATTCTG 59.345 37.037 0.00 0.00 0.00 3.02
3279 6711 7.731054 AGATCAGAGCCTTAAAATCGTATTCT 58.269 34.615 0.00 0.00 0.00 2.40
3280 6712 7.117092 GGAGATCAGAGCCTTAAAATCGTATTC 59.883 40.741 0.00 0.00 0.00 1.75
3281 6713 6.931840 GGAGATCAGAGCCTTAAAATCGTATT 59.068 38.462 0.00 0.00 0.00 1.89
3282 6714 6.459923 GGAGATCAGAGCCTTAAAATCGTAT 58.540 40.000 0.00 0.00 0.00 3.06
3283 6715 5.221461 GGGAGATCAGAGCCTTAAAATCGTA 60.221 44.000 0.00 0.00 0.00 3.43
3284 6716 4.443598 GGGAGATCAGAGCCTTAAAATCGT 60.444 45.833 0.00 0.00 0.00 3.73
3285 6717 4.061596 GGGAGATCAGAGCCTTAAAATCG 58.938 47.826 0.00 0.00 0.00 3.34
3286 6718 5.163258 TGAGGGAGATCAGAGCCTTAAAATC 60.163 44.000 0.00 0.00 0.00 2.17
3287 6719 4.723789 TGAGGGAGATCAGAGCCTTAAAAT 59.276 41.667 0.00 0.00 0.00 1.82
3288 6720 4.080863 GTGAGGGAGATCAGAGCCTTAAAA 60.081 45.833 0.00 0.00 0.00 1.52
3289 6721 3.452627 GTGAGGGAGATCAGAGCCTTAAA 59.547 47.826 0.00 0.00 0.00 1.52
3290 6722 3.034635 GTGAGGGAGATCAGAGCCTTAA 58.965 50.000 0.00 0.00 0.00 1.85
3291 6723 2.023984 TGTGAGGGAGATCAGAGCCTTA 60.024 50.000 0.00 0.00 0.00 2.69
3292 6724 1.273495 TGTGAGGGAGATCAGAGCCTT 60.273 52.381 0.00 0.00 0.00 4.35
3293 6725 0.337773 TGTGAGGGAGATCAGAGCCT 59.662 55.000 0.00 0.00 0.00 4.58
3294 6726 1.134551 GTTGTGAGGGAGATCAGAGCC 60.135 57.143 0.00 0.00 0.00 4.70
3295 6727 1.134551 GGTTGTGAGGGAGATCAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
3296 6728 2.168106 CAGGTTGTGAGGGAGATCAGAG 59.832 54.545 0.00 0.00 0.00 3.35
3297 6729 2.182827 CAGGTTGTGAGGGAGATCAGA 58.817 52.381 0.00 0.00 0.00 3.27
3298 6730 2.093764 GTCAGGTTGTGAGGGAGATCAG 60.094 54.545 0.00 0.00 35.13 2.90
3299 6731 1.902508 GTCAGGTTGTGAGGGAGATCA 59.097 52.381 0.00 0.00 35.13 2.92
3300 6732 1.902508 TGTCAGGTTGTGAGGGAGATC 59.097 52.381 0.00 0.00 35.13 2.75
3301 6733 1.905215 CTGTCAGGTTGTGAGGGAGAT 59.095 52.381 0.00 0.00 35.13 2.75
3302 6734 1.133167 TCTGTCAGGTTGTGAGGGAGA 60.133 52.381 0.00 0.00 35.13 3.71
3303 6735 1.342074 TCTGTCAGGTTGTGAGGGAG 58.658 55.000 0.00 0.00 35.13 4.30
3304 6736 1.416401 GTTCTGTCAGGTTGTGAGGGA 59.584 52.381 0.00 0.00 35.13 4.20
3305 6737 1.140852 TGTTCTGTCAGGTTGTGAGGG 59.859 52.381 0.00 0.00 35.13 4.30
3306 6738 2.487934 CTGTTCTGTCAGGTTGTGAGG 58.512 52.381 0.00 0.00 35.13 3.86
3307 6739 1.869767 GCTGTTCTGTCAGGTTGTGAG 59.130 52.381 0.00 0.00 35.13 3.51
3308 6740 1.475034 GGCTGTTCTGTCAGGTTGTGA 60.475 52.381 0.00 0.00 36.12 3.58
3309 6741 0.947244 GGCTGTTCTGTCAGGTTGTG 59.053 55.000 0.00 0.00 36.12 3.33
3310 6742 0.179018 GGGCTGTTCTGTCAGGTTGT 60.179 55.000 0.00 0.00 36.12 3.32
3311 6743 0.179020 TGGGCTGTTCTGTCAGGTTG 60.179 55.000 0.00 0.00 36.12 3.77
3312 6744 0.550914 TTGGGCTGTTCTGTCAGGTT 59.449 50.000 0.00 0.00 36.12 3.50
3313 6745 0.550914 TTTGGGCTGTTCTGTCAGGT 59.449 50.000 0.00 0.00 36.12 4.00
3314 6746 1.691196 TTTTGGGCTGTTCTGTCAGG 58.309 50.000 0.00 0.00 36.12 3.86
3315 6747 2.229784 GGATTTTGGGCTGTTCTGTCAG 59.770 50.000 0.00 0.00 38.35 3.51
3316 6748 2.158475 AGGATTTTGGGCTGTTCTGTCA 60.158 45.455 0.00 0.00 0.00 3.58
3317 6749 2.489722 GAGGATTTTGGGCTGTTCTGTC 59.510 50.000 0.00 0.00 0.00 3.51
3318 6750 2.158475 TGAGGATTTTGGGCTGTTCTGT 60.158 45.455 0.00 0.00 0.00 3.41
3319 6751 2.517959 TGAGGATTTTGGGCTGTTCTG 58.482 47.619 0.00 0.00 0.00 3.02
3320 6752 2.893489 GTTGAGGATTTTGGGCTGTTCT 59.107 45.455 0.00 0.00 0.00 3.01
3321 6753 2.351738 CGTTGAGGATTTTGGGCTGTTC 60.352 50.000 0.00 0.00 0.00 3.18
3322 6754 1.613437 CGTTGAGGATTTTGGGCTGTT 59.387 47.619 0.00 0.00 0.00 3.16
3323 6755 1.202879 TCGTTGAGGATTTTGGGCTGT 60.203 47.619 0.00 0.00 0.00 4.40
3324 6756 1.533625 TCGTTGAGGATTTTGGGCTG 58.466 50.000 0.00 0.00 0.00 4.85
3325 6757 2.514458 ATCGTTGAGGATTTTGGGCT 57.486 45.000 0.00 0.00 0.00 5.19
3326 6758 2.491693 TGAATCGTTGAGGATTTTGGGC 59.508 45.455 1.04 0.00 36.79 5.36
3327 6759 3.758554 AGTGAATCGTTGAGGATTTTGGG 59.241 43.478 1.04 0.00 36.79 4.12
3328 6760 4.455533 TGAGTGAATCGTTGAGGATTTTGG 59.544 41.667 1.04 0.00 36.79 3.28
3329 6761 5.611796 TGAGTGAATCGTTGAGGATTTTG 57.388 39.130 1.04 0.00 36.79 2.44
3330 6762 6.633500 TTTGAGTGAATCGTTGAGGATTTT 57.367 33.333 1.04 0.00 36.79 1.82
3331 6763 6.430925 TCATTTGAGTGAATCGTTGAGGATTT 59.569 34.615 1.04 0.00 36.79 2.17
3332 6764 5.939883 TCATTTGAGTGAATCGTTGAGGATT 59.060 36.000 0.00 0.00 39.27 3.01
3333 6765 5.352569 GTCATTTGAGTGAATCGTTGAGGAT 59.647 40.000 0.00 0.00 0.00 3.24
3334 6766 4.690748 GTCATTTGAGTGAATCGTTGAGGA 59.309 41.667 0.00 0.00 0.00 3.71
3335 6767 4.452114 TGTCATTTGAGTGAATCGTTGAGG 59.548 41.667 0.00 0.00 0.00 3.86
3336 6768 5.390251 CCTGTCATTTGAGTGAATCGTTGAG 60.390 44.000 0.00 0.00 0.00 3.02
3337 6769 4.452114 CCTGTCATTTGAGTGAATCGTTGA 59.548 41.667 0.00 0.00 0.00 3.18
3338 6770 4.452114 TCCTGTCATTTGAGTGAATCGTTG 59.548 41.667 0.00 0.00 0.00 4.10
3339 6771 4.641396 TCCTGTCATTTGAGTGAATCGTT 58.359 39.130 0.00 0.00 0.00 3.85
3340 6772 4.271696 TCCTGTCATTTGAGTGAATCGT 57.728 40.909 0.00 0.00 0.00 3.73
3341 6773 5.050499 GCTATCCTGTCATTTGAGTGAATCG 60.050 44.000 0.00 0.00 0.00 3.34
3342 6774 6.018098 CAGCTATCCTGTCATTTGAGTGAATC 60.018 42.308 0.00 0.00 36.79 2.52
3343 6775 5.821470 CAGCTATCCTGTCATTTGAGTGAAT 59.179 40.000 0.00 0.00 36.79 2.57
3344 6776 5.181009 CAGCTATCCTGTCATTTGAGTGAA 58.819 41.667 0.00 0.00 36.79 3.18
3345 6777 4.763073 CAGCTATCCTGTCATTTGAGTGA 58.237 43.478 0.00 0.00 36.79 3.41
3364 6796 1.066587 CTCCGCTACAGCCTACAGC 59.933 63.158 0.00 0.00 44.25 4.40
3365 6797 1.066587 GCTCCGCTACAGCCTACAG 59.933 63.158 0.00 0.00 37.91 2.74
3366 6798 1.680989 TGCTCCGCTACAGCCTACA 60.681 57.895 0.00 0.00 35.89 2.74
3367 6799 3.207354 TGCTCCGCTACAGCCTAC 58.793 61.111 0.00 0.00 35.89 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.