AutoCloner

Multiple sequence alignment - TraesCS7B01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G362100	chr7B	100.000	2761	0	0	1	2761	623958640	623955880	0.000000e+00	5099.0
1	TraesCS7B01G362100	chr7B	79.052	654	103	27	2119	2761	684366775	684367405	4.250000e-113	418.0
2	TraesCS7B01G362100	chr7B	79.048	210	37	6	1231	1438	1065849	1065645	1.330000e-28	137.0
3	TraesCS7B01G362100	chr7D	92.723	1539	92	11	989	2522	568375528	568374005	0.000000e+00	2204.0
4	TraesCS7B01G362100	chr7D	90.955	995	76	9	1	993	568379453	568378471	0.000000e+00	1327.0
5	TraesCS7B01G362100	chr7A	91.143	1129	77	14	971	2081	657028313	657027190	0.000000e+00	1509.0
6	TraesCS7B01G362100	chr7A	88.655	996	76	13	1	973	657050293	657049312	0.000000e+00	1179.0
7	TraesCS7B01G362100	chr7A	89.306	720	58	12	2048	2761	657027197	657026491	0.000000e+00	885.0
8	TraesCS7B01G362100	chr7A	86.250	80	9	2	17	95	43171653	43171575	4.900000e-13	86.1
9	TraesCS7B01G362100	chr3D	85.649	655	68	16	2119	2761	359681156	359681796	0.000000e+00	665.0
10	TraesCS7B01G362100	chr3D	73.723	411	81	18	1	405	564567207	564567596	4.800000e-28	135.0
11	TraesCS7B01G362100	chr5B	80.745	644	99	19	2119	2755	391808641	391809266	1.920000e-131	479.0
12	TraesCS7B01G362100	chr5B	79.331	658	102	26	2113	2761	590377411	590378043	5.460000e-117	431.0
13	TraesCS7B01G362100	chr1A	80.277	649	107	15	2119	2761	451355112	451355745	1.160000e-128	470.0
14	TraesCS7B01G362100	chr4D	80.526	647	94	20	2114	2755	323111523	323112142	4.160000e-128	468.0
15	TraesCS7B01G362100	chr3B	79.483	658	100	26	2114	2761	143514073	143514705	4.220000e-118	435.0
16	TraesCS7B01G362100	chr5A	79.205	654	112	15	2115	2759	608199262	608199900	1.520000e-117	433.0
17	TraesCS7B01G362100	chr6B	73.466	701	139	34	218	907	221811962	221811298	1.290000e-53	220.0
18	TraesCS7B01G362100	chr6B	85.000	80	8	4	206	283	633898114	633898037	8.200000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G362100	chr7B	623955880	623958640	2760	True	5099.0	5099	100.0000	1	2761	1	chr7B.!!$R2	2760
1	TraesCS7B01G362100	chr7B	684366775	684367405	630	False	418.0	418	79.0520	2119	2761	1	chr7B.!!$F1	642
2	TraesCS7B01G362100	chr7D	568374005	568379453	5448	True	1765.5	2204	91.8390	1	2522	2	chr7D.!!$R1	2521
3	TraesCS7B01G362100	chr7A	657026491	657028313	1822	True	1197.0	1509	90.2245	971	2761	2	chr7A.!!$R3	1790
4	TraesCS7B01G362100	chr7A	657049312	657050293	981	True	1179.0	1179	88.6550	1	973	1	chr7A.!!$R2	972
5	TraesCS7B01G362100	chr3D	359681156	359681796	640	False	665.0	665	85.6490	2119	2761	1	chr3D.!!$F1	642
6	TraesCS7B01G362100	chr5B	391808641	391809266	625	False	479.0	479	80.7450	2119	2755	1	chr5B.!!$F1	636
7	TraesCS7B01G362100	chr5B	590377411	590378043	632	False	431.0	431	79.3310	2113	2761	1	chr5B.!!$F2	648
8	TraesCS7B01G362100	chr1A	451355112	451355745	633	False	470.0	470	80.2770	2119	2761	1	chr1A.!!$F1	642
9	TraesCS7B01G362100	chr4D	323111523	323112142	619	False	468.0	468	80.5260	2114	2755	1	chr4D.!!$F1	641
10	TraesCS7B01G362100	chr3B	143514073	143514705	632	False	435.0	435	79.4830	2114	2761	1	chr3B.!!$F1	647
11	TraesCS7B01G362100	chr5A	608199262	608199900	638	False	433.0	433	79.2050	2115	2759	1	chr5A.!!$F1	644
12	TraesCS7B01G362100	chr6B	221811298	221811962	664	True	220.0	220	73.4660	218	907	1	chr6B.!!$R1	689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
950	978	0.46546	AACACAGCACACCGGTCATT	60.465	50.0	2.59	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2552	5598	0.817634	TTGGTGCTACACTGCCACAC	60.818	55.0	0.0	0.0	34.4	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	3.281727	TCATTGCCTTCAGGTGTATCC	57.718	47.619	0.00	0.00	37.57	2.59
63	64	2.093447	CCATAGTCCCTTCAGGTGTGAC	60.093	54.545	0.00	0.00	36.75	3.67
122	138	5.687780	TGATCTGGCAGAATGTTATGTGAT	58.312	37.500	22.84	0.00	39.31	3.06
287	310	1.989430	CTCTTGCTGACTTCTCCGTC	58.011	55.000	0.00	0.00	34.52	4.79
398	421	1.173913	GCGTGCTTGGAAAGGGTATT	58.826	50.000	0.00	0.00	46.35	1.89
420	446	4.030913	TCTTCCGATGTAATTCCCTGTCT	58.969	43.478	0.00	0.00	0.00	3.41
423	449	5.174037	TCCGATGTAATTCCCTGTCTTTT	57.826	39.130	0.00	0.00	0.00	2.27
575	602	6.619801	ACTTGTTCCTCAGTAACAAATGAC	57.380	37.500	0.00	0.00	43.98	3.06
619	646	5.046910	ACTCAAGGTATTTTTCATGCACG	57.953	39.130	0.00	0.00	0.00	5.34
649	676	0.609131	TAAAGTGGCCTGGAAGCAGC	60.609	55.000	3.32	0.00	0.00	5.25
680	707	3.842869	GTCATTCTGACTTCGGCCT	57.157	52.632	0.00	0.00	43.73	5.19
705	732	3.504863	TGGTTAGAAGTCGTCGTAATGC	58.495	45.455	0.00	0.00	0.00	3.56
709	736	3.138205	AGAAGTCGTCGTAATGCAGAG	57.862	47.619	0.00	0.00	0.00	3.35
746	773	3.433306	TGAGGGTTGGTGTTCCTAATG	57.567	47.619	0.00	0.00	34.23	1.90
754	781	5.710099	GGTTGGTGTTCCTAATGATTTCTCA	59.290	40.000	0.00	0.00	33.27	3.27
761	789	8.562892	GTGTTCCTAATGATTTCTCATGGTATG	58.437	37.037	0.00	0.00	41.34	2.39
907	935	3.060098	CAGCGTCGAGAAGAGTTTTCATC	59.940	47.826	0.00	0.00	0.00	2.92
912	940	6.190264	CGTCGAGAAGAGTTTTCATCGTATA	58.810	40.000	11.89	0.00	0.00	1.47
913	941	6.851837	CGTCGAGAAGAGTTTTCATCGTATAT	59.148	38.462	11.89	0.00	0.00	0.86
938	966	6.500684	TCCAGAAGATATTTTCAACACAGC	57.499	37.500	8.56	0.00	0.00	4.40
939	967	6.003326	TCCAGAAGATATTTTCAACACAGCA	58.997	36.000	8.56	0.00	0.00	4.41
942	970	6.580041	CAGAAGATATTTTCAACACAGCACAC	59.420	38.462	8.56	0.00	0.00	3.82
950	978	0.465460	AACACAGCACACCGGTCATT	60.465	50.000	2.59	0.00	0.00	2.57
954	982	1.066858	ACAGCACACCGGTCATTAGAG	60.067	52.381	2.59	0.00	0.00	2.43
959	987	3.864921	GCACACCGGTCATTAGAGAAGTT	60.865	47.826	2.59	0.00	0.00	2.66
966	994	6.662663	ACCGGTCATTAGAGAAGTTAGTAGTT	59.337	38.462	0.00	0.00	0.00	2.24
987	1015	4.303086	TGCTATAGGACGTGAAGCTAAC	57.697	45.455	0.00	0.00	34.28	2.34
1008	3983	3.709653	ACGAAGGACTATTAATGGCCTCA	59.290	43.478	3.32	0.00	0.00	3.86
1094	4069	7.174253	GTCCACATGTAAAATCAAGAAGGTACA	59.826	37.037	0.00	0.00	0.00	2.90
1269	4258	9.574516	ACTTCGGGCTTCTATTTATATTTTCAT	57.425	29.630	0.00	0.00	0.00	2.57
1299	4288	0.045623	TTGGGATTGGAGGCCCTCTA	59.954	55.000	11.29	0.34	44.96	2.43
1326	4315	2.202892	GGTGGGAATCTCGTCGGC	60.203	66.667	0.00	0.00	0.00	5.54
1344	4333	2.810274	CGGCATGAACTTCTATGATGGG	59.190	50.000	0.00	0.00	0.00	4.00
1407	4396	7.430211	GTCGACGTTTTAAAGAAAAAGATTGGT	59.570	33.333	0.00	0.00	37.74	3.67
1410	4399	9.940166	GACGTTTTAAAGAAAAAGATTGGTCTA	57.060	29.630	0.00	0.00	37.74	2.59
1411	4400	9.946165	ACGTTTTAAAGAAAAAGATTGGTCTAG	57.054	29.630	3.63	0.00	37.74	2.43
1413	4402	9.744468	GTTTTAAAGAAAAAGATTGGTCTAGCA	57.256	29.630	0.00	0.00	37.74	3.49
1417	4406	8.870075	AAAGAAAAAGATTGGTCTAGCACTAT	57.130	30.769	0.00	0.00	33.30	2.12
1432	4421	7.120873	GTCTAGCACTATCATCGGAAAGGTATA	59.879	40.741	0.00	0.00	0.00	1.47
1479	4471	6.046593	TGCTAGTTGTAGTTGGTATGCATAC	58.953	40.000	25.74	25.74	0.00	2.39
1725	4717	2.642171	ACTTGAGGTGGATAGGTGGA	57.358	50.000	0.00	0.00	0.00	4.02
1737	4729	2.965572	TAGGTGGATTTTACCGGACG	57.034	50.000	9.46	0.00	43.06	4.79
1747	4739	3.337694	TTTACCGGACGTTCATGGAAT	57.662	42.857	9.46	0.00	0.00	3.01
1800	4792	9.958180	TTGTTGGATTGATCTAGAAAGTATTGA	57.042	29.630	0.00	0.00	0.00	2.57
1820	4812	9.026074	GTATTGACTTCTACTCATCTTAGCAAC	57.974	37.037	0.00	0.00	0.00	4.17
1888	4881	9.724839	GATCTAGAAGTATTTGACAGACAGTAC	57.275	37.037	0.00	0.00	0.00	2.73
1922	4915	4.836825	ACTATGTGACTGAATGAACCCAG	58.163	43.478	0.00	0.00	36.53	4.45
2040	5033	8.772705	TATGATTGCTTTTTCATTGTTGGAAAC	58.227	29.630	0.00	0.00	39.22	2.78
2087	5107	8.417780	TTTATTGTTGTTGTTGTTGGAATCAG	57.582	30.769	0.00	0.00	0.00	2.90
2139	5161	5.777732	ACTTCCTCTATAACTATGCTCCCTG	59.222	44.000	0.00	0.00	0.00	4.45
2200	5222	4.118168	ACTTGGGTCACCTGATTTTGAT	57.882	40.909	0.00	0.00	37.76	2.57
2202	5224	3.805066	TGGGTCACCTGATTTTGATCA	57.195	42.857	0.00	0.00	37.76	2.92
2282	5304	6.220726	TGCTTCCTAATTTTTAAGGCATCC	57.779	37.500	0.00	0.00	32.55	3.51
2434	5467	9.527157	TCAACTGAGGTATTCAATTTTGGATTA	57.473	29.630	0.00	0.00	34.81	1.75
2514	5549	5.742562	ATAAAAACATATCACCTCCCCCA	57.257	39.130	0.00	0.00	0.00	4.96
2515	5550	3.382083	AAAACATATCACCTCCCCCAC	57.618	47.619	0.00	0.00	0.00	4.61
2516	5551	2.286935	AACATATCACCTCCCCCACT	57.713	50.000	0.00	0.00	0.00	4.00
2517	5552	1.511613	ACATATCACCTCCCCCACTG	58.488	55.000	0.00	0.00	0.00	3.66
2518	5553	0.767375	CATATCACCTCCCCCACTGG	59.233	60.000	0.00	0.00	0.00	4.00
2538	5582	2.564947	GGCACCCTACCATCATCTAGAG	59.435	54.545	0.00	0.00	0.00	2.43
2549	5595	4.272018	CCATCATCTAGAGAAAAAGTGCCG	59.728	45.833	0.00	0.00	0.00	5.69
2552	5598	0.721718	CTAGAGAAAAAGTGCCGCCG	59.278	55.000	0.00	0.00	0.00	6.46
2585	5634	5.989168	TGTAGCACCAATATAGTACATGCAC	59.011	40.000	0.00	0.00	34.03	4.57
2630	5681	6.011451	TCCCCTGTAAAATATAGGTTGGTTGT	60.011	38.462	0.00	0.00	35.49	3.32
2631	5682	6.320418	CCCCTGTAAAATATAGGTTGGTTGTC	59.680	42.308	0.00	0.00	35.49	3.18
2652	5703	6.403049	TGTCGATAACACATAATCACACCTT	58.597	36.000	0.00	0.00	31.20	3.50
2745	5796	9.927668	CCAAACTAAATATTCCAACAACTTCAT	57.072	29.630	0.00	0.00	0.00	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	4.858850	ACACCTGAAGGCAATGAATATGA	58.141	39.130	0.00	0.00	39.32	2.15
40	41	2.698855	CACCTGAAGGGACTATGGTG	57.301	55.000	0.56	0.00	42.91	4.17
202	218	3.117284	GGATAGCCCTGGGATTTTAACCA	60.117	47.826	19.27	0.00	35.05	3.67
287	310	5.232414	GGAGTTAGCTATAAAGAAGTGCACG	59.768	44.000	12.01	0.00	0.00	5.34
340	363	6.812160	GCTCTTCAAAATGATCAAGCAATTCT	59.188	34.615	0.00	0.00	30.66	2.40
423	449	5.070180	TGATTTCCAGATGCAAAACTCCAAA	59.930	36.000	0.00	0.00	0.00	3.28
575	602	6.286758	AGTATCCTGCACATCATAGTTTCAG	58.713	40.000	0.00	0.00	0.00	3.02
601	628	2.094234	GCCCGTGCATGAAAAATACCTT	60.094	45.455	7.72	0.00	37.47	3.50
619	646	3.096852	AGGCCACTTTATAAACAAGCCC	58.903	45.455	17.80	6.56	40.06	5.19
649	676	0.716108	GAATGACTGAGCGTGTTCCG	59.284	55.000	0.00	0.00	40.40	4.30
680	707	3.441496	ACGACGACTTCTAACCAAACA	57.559	42.857	0.00	0.00	0.00	2.83
705	732	7.012138	CCCTCAAGTCATTATCAATGTTCTCTG	59.988	40.741	0.00	2.89	39.87	3.35
709	736	7.253422	CAACCCTCAAGTCATTATCAATGTTC	58.747	38.462	0.00	0.00	39.87	3.18
761	789	8.713271	GCTCAGCTAACCATCATATAACTTAAC	58.287	37.037	0.00	0.00	0.00	2.01
870	898	3.419915	GACGCTGACAATAGCAATGTTG	58.580	45.455	0.00	0.00	43.87	3.33
912	940	8.844244	GCTGTGTTGAAAATATCTTCTGGATAT	58.156	33.333	0.00	0.00	46.29	1.63
913	941	7.828717	TGCTGTGTTGAAAATATCTTCTGGATA	59.171	33.333	0.00	0.00	40.69	2.59
933	961	1.078709	CTAATGACCGGTGTGCTGTG	58.921	55.000	14.63	0.00	0.00	3.66
938	966	3.594603	ACTTCTCTAATGACCGGTGTG	57.405	47.619	14.63	0.00	0.00	3.82
939	967	4.771054	ACTAACTTCTCTAATGACCGGTGT	59.229	41.667	14.63	0.00	0.00	4.16
942	970	6.696441	ACTACTAACTTCTCTAATGACCGG	57.304	41.667	0.00	0.00	0.00	5.28
950	978	9.558396	GTCCTATAGCAACTACTAACTTCTCTA	57.442	37.037	0.00	0.00	0.00	2.43
954	982	6.911511	CACGTCCTATAGCAACTACTAACTTC	59.088	42.308	0.00	0.00	0.00	3.01
959	987	5.008415	GCTTCACGTCCTATAGCAACTACTA	59.992	44.000	0.00	0.00	0.00	1.82
966	994	3.242969	CGTTAGCTTCACGTCCTATAGCA	60.243	47.826	9.42	0.00	34.37	3.49
987	1015	4.058817	GTGAGGCCATTAATAGTCCTTCG	58.941	47.826	5.01	0.00	0.00	3.79
1008	3983	0.386476	TACGCTTCACTTCACCACGT	59.614	50.000	0.00	0.00	36.17	4.49
1094	4069	6.486993	GGAAACAGTAAGAGAAATTCACCACT	59.513	38.462	0.00	0.00	0.00	4.00
1142	4117	3.054434	AGACTGCCTACCATGCAACATTA	60.054	43.478	0.00	0.00	38.46	1.90
1215	4204	3.672808	AGAAGTTGCAACTCCTGAGATG	58.327	45.455	31.20	0.35	38.57	2.90
1225	4214	4.318831	CGAAGTTAGTGGAGAAGTTGCAAC	60.319	45.833	22.17	22.17	0.00	4.17
1228	4217	2.737252	CCGAAGTTAGTGGAGAAGTTGC	59.263	50.000	0.00	0.00	0.00	4.17
1269	4258	4.966805	CCTCCAATCCCAACCTAGTTAGTA	59.033	45.833	0.00	0.00	0.00	1.82
1279	4268	1.076705	GAGGGCCTCCAATCCCAAC	60.077	63.158	23.49	0.00	45.07	3.77
1299	4288	6.404293	CGACGAGATTCCCACCAAAATTAATT	60.404	38.462	0.00	0.00	0.00	1.40
1326	4315	5.067954	TCATGCCCATCATAGAAGTTCATG	58.932	41.667	5.50	7.21	33.19	3.07
1344	4333	3.366781	GCAGGAAAGGAGTTTCTTCATGC	60.367	47.826	5.12	5.12	41.72	4.06
1407	4396	4.215908	ACCTTTCCGATGATAGTGCTAGA	58.784	43.478	0.00	0.00	0.00	2.43
1410	4399	6.859112	ATATACCTTTCCGATGATAGTGCT	57.141	37.500	0.00	0.00	0.00	4.40
1411	4400	7.907214	AAATATACCTTTCCGATGATAGTGC	57.093	36.000	0.00	0.00	0.00	4.40
1438	4427	4.573201	ACTAGCAAAGCGTAACACAAAGAA	59.427	37.500	0.00	0.00	0.00	2.52
1440	4429	4.468095	ACTAGCAAAGCGTAACACAAAG	57.532	40.909	0.00	0.00	0.00	2.77
1442	4431	3.623960	ACAACTAGCAAAGCGTAACACAA	59.376	39.130	0.00	0.00	0.00	3.33
1449	4441	2.806244	CCAACTACAACTAGCAAAGCGT	59.194	45.455	0.00	0.00	0.00	5.07
1451	4443	5.673818	GCATACCAACTACAACTAGCAAAGC	60.674	44.000	0.00	0.00	0.00	3.51
1452	4444	5.411361	TGCATACCAACTACAACTAGCAAAG	59.589	40.000	0.00	0.00	0.00	2.77
1453	4445	5.309638	TGCATACCAACTACAACTAGCAAA	58.690	37.500	0.00	0.00	0.00	3.68
1454	4446	4.900684	TGCATACCAACTACAACTAGCAA	58.099	39.130	0.00	0.00	0.00	3.91
1479	4471	5.640783	TCAATGTCAGTTAGCAGAATGAGTG	59.359	40.000	0.00	0.00	39.69	3.51
1513	4505	4.082125	GGTTCAATCCTCTGTTGTCCAAT	58.918	43.478	0.00	0.00	0.00	3.16
1519	4511	1.815003	GGCTGGTTCAATCCTCTGTTG	59.185	52.381	0.00	0.00	0.00	3.33
1520	4512	1.707427	AGGCTGGTTCAATCCTCTGTT	59.293	47.619	0.00	0.00	0.00	3.16
1594	4586	7.066887	CAGTATATGCTACCACAAACAAATGGA	59.933	37.037	0.00	0.00	39.46	3.41
1683	4675	3.181445	ACACCATGATACCAATATGGCGT	60.181	43.478	0.00	0.00	44.06	5.68
1725	4717	3.337694	TCCATGAACGTCCGGTAAAAT	57.662	42.857	0.00	0.00	0.00	1.82
1737	4729	7.935755	TCTCTATTGGAGATTCATTCCATGAAC	59.064	37.037	1.25	0.00	45.20	3.18
1800	4792	8.760980	AGATAGTTGCTAAGATGAGTAGAAGT	57.239	34.615	0.00	0.00	0.00	3.01
1806	4798	8.364142	GTCCATTAGATAGTTGCTAAGATGAGT	58.636	37.037	0.00	0.00	31.94	3.41
1820	4812	5.279206	CCAGCACTACAGGTCCATTAGATAG	60.279	48.000	4.22	0.00	0.00	2.08
2110	5130	9.026121	GGAGCATAGTTATAGAGGAAGTATTGA	57.974	37.037	0.00	0.00	0.00	2.57
2139	5161	4.864704	TGAATGTGGGCTCTTTAAAACC	57.135	40.909	0.00	0.00	0.00	3.27
2200	5222	4.889409	AGCTTTGAGAAATTGTTGACCTGA	59.111	37.500	0.00	0.00	0.00	3.86
2202	5224	5.136105	AGAGCTTTGAGAAATTGTTGACCT	58.864	37.500	0.00	0.00	0.00	3.85
2434	5467	3.069289	GTCCGGTCAAAATCGTAAACCT	58.931	45.455	0.00	0.00	0.00	3.50
2485	5519	5.937111	AGGTGATATGTTTTTATAGGCCGT	58.063	37.500	0.00	0.00	0.00	5.68
2514	5549	0.839946	GATGATGGTAGGGTGCCAGT	59.160	55.000	0.00	0.00	39.65	4.00
2515	5550	1.135094	AGATGATGGTAGGGTGCCAG	58.865	55.000	0.00	0.00	39.65	4.85
2516	5551	2.090775	TCTAGATGATGGTAGGGTGCCA	60.091	50.000	0.00	0.00	40.68	4.92
2517	5552	2.564947	CTCTAGATGATGGTAGGGTGCC	59.435	54.545	0.00	0.00	0.00	5.01
2518	5553	3.501349	TCTCTAGATGATGGTAGGGTGC	58.499	50.000	0.00	0.00	0.00	5.01
2538	5582	1.657181	CACACGGCGGCACTTTTTC	60.657	57.895	13.24	0.00	0.00	2.29
2552	5598	0.817634	TTGGTGCTACACTGCCACAC	60.818	55.000	0.00	0.00	34.40	3.82
2601	5651	8.126385	ACCAACCTATATTTTACAGGGGATTTT	58.874	33.333	0.00	0.00	33.48	1.82
2602	5652	7.658260	ACCAACCTATATTTTACAGGGGATTT	58.342	34.615	0.00	0.00	33.48	2.17
2610	5660	9.887629	TTATCGACAACCAACCTATATTTTACA	57.112	29.630	0.00	0.00	0.00	2.41
2612	5662	9.887629	TGTTATCGACAACCAACCTATATTTTA	57.112	29.630	3.75	0.00	34.69	1.52
2630	5681	6.635755	TCAAGGTGTGATTATGTGTTATCGA	58.364	36.000	0.00	0.00	0.00	3.59
2631	5682	6.902224	TCAAGGTGTGATTATGTGTTATCG	57.098	37.500	0.00	0.00	0.00	2.92
2652	5703	1.337118	GTGATTTGGTGGGCCTTTCA	58.663	50.000	4.53	0.00	35.27	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.