Multiple sequence alignment - TraesCS7B01G361800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G361800 chr7B 100.000 5188 0 0 1 5188 623942850 623948037 0.000000e+00 9581
1 TraesCS7B01G361800 chr7D 85.661 1074 71 21 422 1450 568362906 568363941 0.000000e+00 1053
2 TraesCS7B01G361800 chr7D 88.444 900 57 14 1449 2311 568364107 568364996 0.000000e+00 1042
3 TraesCS7B01G361800 chr7D 91.457 714 43 9 2304 3013 568365998 568366697 0.000000e+00 965
4 TraesCS7B01G361800 chr7D 92.857 532 29 8 3837 4368 568366721 568367243 0.000000e+00 763
5 TraesCS7B01G361800 chr7D 92.506 427 26 3 1 423 568362451 568362875 1.600000e-169 606
6 TraesCS7B01G361800 chr7D 79.872 626 84 21 3054 3661 75137007 75137608 2.230000e-113 420
7 TraesCS7B01G361800 chr7D 86.230 305 37 3 1 303 8735958 8735657 5.010000e-85 326
8 TraesCS7B01G361800 chr7D 82.951 305 47 3 1 303 9831676 9831977 2.380000e-68 270
9 TraesCS7B01G361800 chr7D 82.014 278 44 4 3018 3293 499535036 499534763 1.120000e-56 231
10 TraesCS7B01G361800 chr7D 87.562 201 18 5 4982 5178 568367957 568368154 5.230000e-55 226
11 TraesCS7B01G361800 chr7D 84.564 149 21 2 3661 3808 50644860 50644713 4.190000e-31 147
12 TraesCS7B01G361800 chr7D 87.850 107 10 2 4520 4623 568367351 568367457 7.050000e-24 122
13 TraesCS7B01G361800 chr7A 85.558 914 73 27 3837 4740 657020339 657021203 0.000000e+00 902
14 TraesCS7B01G361800 chr7A 90.148 609 48 4 2408 3013 657019719 657020318 0.000000e+00 782
15 TraesCS7B01G361800 chr7A 85.896 709 51 10 498 1179 657017523 657018209 0.000000e+00 710
16 TraesCS7B01G361800 chr7A 86.640 494 46 14 1878 2360 657019222 657019706 3.560000e-146 529
17 TraesCS7B01G361800 chr7A 82.021 584 52 25 1189 1735 657018261 657018828 1.020000e-121 448
18 TraesCS7B01G361800 chr7A 85.131 343 37 4 3329 3661 57697914 57698252 6.430000e-89 339
19 TraesCS7B01G361800 chr7A 86.331 139 15 4 3673 3808 617112718 617112581 1.160000e-31 148
20 TraesCS7B01G361800 chr7A 86.598 97 7 3 5097 5188 657021676 657021771 9.190000e-18 102
21 TraesCS7B01G361800 chr2D 85.253 651 73 14 3023 3660 552970624 552971264 0.000000e+00 649
22 TraesCS7B01G361800 chr2D 83.000 300 37 10 3024 3317 131479968 131479677 5.150000e-65 259
23 TraesCS7B01G361800 chr5B 82.836 670 74 24 3013 3664 679577748 679577102 3.510000e-156 562
24 TraesCS7B01G361800 chr5B 82.969 640 70 18 3034 3660 103486168 103486781 4.570000e-150 542
25 TraesCS7B01G361800 chr5B 81.221 655 75 26 3022 3661 622547477 622548098 7.810000e-133 484
26 TraesCS7B01G361800 chr5B 83.984 256 30 6 3022 3267 368502693 368502439 8.690000e-58 235
27 TraesCS7B01G361800 chr5B 94.783 115 5 1 3695 3808 679576946 679576832 1.480000e-40 178
28 TraesCS7B01G361800 chr5B 85.811 148 19 2 3662 3808 103486876 103487022 6.960000e-34 156
29 TraesCS7B01G361800 chrUn 82.663 646 65 17 3026 3659 68510544 68511154 3.560000e-146 529
30 TraesCS7B01G361800 chr3B 81.847 628 82 16 3025 3643 373890040 373889436 2.790000e-137 499
31 TraesCS7B01G361800 chr5D 80.710 648 67 20 3026 3661 547612028 547612629 7.920000e-123 451
32 TraesCS7B01G361800 chr5D 88.655 238 23 2 3026 3262 110867703 110867937 2.360000e-73 287
33 TraesCS7B01G361800 chr3D 82.398 392 52 11 3285 3661 276508257 276508646 5.010000e-85 326
34 TraesCS7B01G361800 chr3D 84.553 246 30 5 3020 3264 178526029 178526267 2.410000e-58 237
35 TraesCS7B01G361800 chr3D 82.517 143 24 1 3636 3777 55037050 55036908 1.960000e-24 124
36 TraesCS7B01G361800 chr2B 79.110 517 65 25 3156 3661 638750564 638751048 3.020000e-82 316
37 TraesCS7B01G361800 chr4B 85.246 305 38 5 1 302 406467008 406466708 1.810000e-79 307
38 TraesCS7B01G361800 chr2A 83.188 345 45 8 3329 3661 196528178 196528521 2.350000e-78 303
39 TraesCS7B01G361800 chr2A 87.597 129 12 4 83 208 10595868 10595995 4.190000e-31 147
40 TraesCS7B01G361800 chr6B 84.351 262 31 10 3026 3284 96620435 96620181 1.120000e-61 248
41 TraesCS7B01G361800 chr6B 84.393 173 24 3 3638 3808 436800014 436800185 3.210000e-37 167
42 TraesCS7B01G361800 chr3A 83.721 172 24 2 3638 3808 33420971 33421139 5.380000e-35 159
43 TraesCS7B01G361800 chr1D 87.302 126 15 1 3684 3808 79453907 79454032 5.420000e-30 143
44 TraesCS7B01G361800 chr1D 81.879 149 26 1 3661 3808 412179816 412179668 1.960000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G361800 chr7B 623942850 623948037 5187 False 9581.000000 9581 100.000000 1 5188 1 chr7B.!!$F1 5187
1 TraesCS7B01G361800 chr7D 568362451 568368154 5703 False 682.428571 1053 89.476714 1 5178 7 chr7D.!!$F3 5177
2 TraesCS7B01G361800 chr7D 75137007 75137608 601 False 420.000000 420 79.872000 3054 3661 1 chr7D.!!$F2 607
3 TraesCS7B01G361800 chr7A 657017523 657021771 4248 False 578.833333 902 86.143500 498 5188 6 chr7A.!!$F2 4690
4 TraesCS7B01G361800 chr2D 552970624 552971264 640 False 649.000000 649 85.253000 3023 3660 1 chr2D.!!$F1 637
5 TraesCS7B01G361800 chr5B 622547477 622548098 621 False 484.000000 484 81.221000 3022 3661 1 chr5B.!!$F1 639
6 TraesCS7B01G361800 chr5B 679576832 679577748 916 True 370.000000 562 88.809500 3013 3808 2 chr5B.!!$R2 795
7 TraesCS7B01G361800 chr5B 103486168 103487022 854 False 349.000000 542 84.390000 3034 3808 2 chr5B.!!$F2 774
8 TraesCS7B01G361800 chrUn 68510544 68511154 610 False 529.000000 529 82.663000 3026 3659 1 chrUn.!!$F1 633
9 TraesCS7B01G361800 chr3B 373889436 373890040 604 True 499.000000 499 81.847000 3025 3643 1 chr3B.!!$R1 618
10 TraesCS7B01G361800 chr5D 547612028 547612629 601 False 451.000000 451 80.710000 3026 3661 1 chr5D.!!$F2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 959 0.178935 CCATCTCCTCCTCCTCCTCC 60.179 65.0 0.00 0.0 0.00 4.30 F
1634 1943 0.679505 TCTTACTCAACGGCTGCAGT 59.320 50.0 16.64 0.0 0.00 4.40 F
1840 2260 0.034896 TCCCTGACAAAAGGAGTCGC 59.965 55.0 0.00 0.0 40.02 5.19 F
1854 2274 0.179004 AGTCGCATTGGTTCCCAACA 60.179 50.0 0.00 0.0 46.95 3.33 F
3566 5241 0.038709 CGGCCAAAATTTCGAAGCCA 60.039 50.0 19.95 0.0 40.49 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 2012 0.034059 AGACTGTTGCAAGTCCCTCG 59.966 55.000 13.72 0.00 46.51 4.63 R
3132 4741 0.105246 ATCTCAGGGAGGCGGAGATT 60.105 55.000 0.00 0.00 43.87 2.40 R
3543 5218 1.464376 TTCGAAATTTTGGCCGGCCA 61.464 50.000 44.23 44.23 45.63 5.36 R
3831 5659 4.350368 TCCATTCACAACAGTAAGAGCA 57.650 40.909 0.00 0.00 0.00 4.26 R
4825 6701 0.038343 CAATGCCTGGGGTTTCAACG 60.038 55.000 0.00 0.00 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.741770 CGAGGCCACCAGCTTACAC 60.742 63.158 5.01 0.00 43.05 2.90
82 83 3.464907 TCGTGACCGATCCTAACTCTAG 58.535 50.000 0.00 0.00 38.40 2.43
86 87 3.818180 GACCGATCCTAACTCTAGGTCA 58.182 50.000 6.83 0.00 44.70 4.02
176 179 1.518774 CTTAAGCCGGCCCGTCTTA 59.481 57.895 26.15 12.27 0.00 2.10
220 223 2.499303 CTTGATCCCTTGGGCCCGTT 62.499 60.000 19.37 0.00 0.00 4.44
226 229 3.702048 CTTGGGCCCGTTCGAGGA 61.702 66.667 19.37 0.00 0.00 3.71
295 298 4.110482 GGTCATACCGCGTGATTATATCC 58.890 47.826 4.92 0.00 0.00 2.59
310 313 7.012421 GTGATTATATCCCCAACACTTTCAGTC 59.988 40.741 0.00 0.00 0.00 3.51
316 319 2.874701 CCCAACACTTTCAGTCTCACAG 59.125 50.000 0.00 0.00 0.00 3.66
320 323 5.123820 CCAACACTTTCAGTCTCACAGAAAA 59.876 40.000 0.00 0.00 34.07 2.29
327 330 4.707105 TCAGTCTCACAGAAAATCAGCAA 58.293 39.130 0.00 0.00 0.00 3.91
383 388 7.021196 TCAGTTATTTTGATTAGCGTTTGAGC 58.979 34.615 0.00 0.00 37.41 4.26
433 470 7.354025 TCAAGCAAAAATTTCATGCATACTG 57.646 32.000 23.16 16.27 42.45 2.74
435 472 5.484715 AGCAAAAATTTCATGCATACTGCT 58.515 33.333 23.16 2.29 45.31 4.24
490 527 6.874288 AATATTCTAGTGGCTGCTGAAATC 57.126 37.500 0.00 0.00 0.00 2.17
501 538 5.046878 TGGCTGCTGAAATCAATGAAATTCT 60.047 36.000 11.60 0.00 31.22 2.40
506 543 8.975410 TGCTGAAATCAATGAAATTCTGTAAG 57.025 30.769 15.11 6.77 31.22 2.34
577 621 0.181350 GCGGACATTTGATCCCCTCT 59.819 55.000 0.00 0.00 31.99 3.69
605 649 2.103094 TGATCCTGGAGTTGGCTATTCG 59.897 50.000 1.52 0.00 0.00 3.34
606 650 1.860641 TCCTGGAGTTGGCTATTCGA 58.139 50.000 0.00 0.00 0.00 3.71
616 660 4.643733 CTATTCGAGCTCGGCCAG 57.356 61.111 33.98 22.95 40.29 4.85
703 777 5.296780 AGAAAGAACACGTGACAATGACATT 59.703 36.000 25.01 1.68 0.00 2.71
704 778 5.499139 AAGAACACGTGACAATGACATTT 57.501 34.783 25.01 0.82 0.00 2.32
705 779 4.847633 AGAACACGTGACAATGACATTTG 58.152 39.130 25.01 0.00 0.00 2.32
706 780 4.574421 AGAACACGTGACAATGACATTTGA 59.426 37.500 25.01 0.00 0.00 2.69
707 781 4.209452 ACACGTGACAATGACATTTGAC 57.791 40.909 25.01 0.00 0.00 3.18
708 782 3.625313 ACACGTGACAATGACATTTGACA 59.375 39.130 25.01 0.00 0.00 3.58
821 898 1.136984 GGGTCGAGCACGTACTCAG 59.863 63.158 17.59 8.60 40.69 3.35
876 953 1.460497 GTCCCCCATCTCCTCCTCC 60.460 68.421 0.00 0.00 0.00 4.30
878 955 1.152139 CCCCCATCTCCTCCTCCTC 60.152 68.421 0.00 0.00 0.00 3.71
879 956 1.152139 CCCCATCTCCTCCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
880 957 1.673928 CCCCATCTCCTCCTCCTCCT 61.674 65.000 0.00 0.00 0.00 3.69
882 959 0.178935 CCATCTCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
883 960 0.859760 CATCTCCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
884 961 1.158007 ATCTCCTCCTCCTCCTCCTC 58.842 60.000 0.00 0.00 0.00 3.71
885 962 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
886 963 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
887 964 1.232792 CCTCCTCCTCCTCCTCCTG 59.767 68.421 0.00 0.00 0.00 3.86
888 965 1.232792 CTCCTCCTCCTCCTCCTGG 59.767 68.421 0.00 0.00 0.00 4.45
889 966 2.445654 CCTCCTCCTCCTCCTGGC 60.446 72.222 0.00 0.00 0.00 4.85
890 967 2.366167 CTCCTCCTCCTCCTGGCA 59.634 66.667 0.00 0.00 0.00 4.92
906 983 0.804989 GGCAACTCCCTTCGTCATTG 59.195 55.000 0.00 0.00 0.00 2.82
941 1018 3.555324 TCAGTGGCTGGCGAACCA 61.555 61.111 0.00 0.00 46.51 3.67
993 1075 1.082690 GAAAGGGAAAGAGCAGAGCG 58.917 55.000 0.00 0.00 0.00 5.03
1132 1214 1.081892 CTCCACATCAAAGGTCAGCG 58.918 55.000 0.00 0.00 0.00 5.18
1155 1237 2.043980 CGCCCCTAACCACGCATTT 61.044 57.895 0.00 0.00 0.00 2.32
1183 1265 2.611473 CGATTGGGGATCTCCTCGATTG 60.611 54.545 16.37 6.72 40.75 2.67
1213 1337 4.124970 TGCTGCTGATCTGCTTTATACTG 58.875 43.478 23.02 6.60 39.95 2.74
1241 1365 5.779932 TTCGTTAGAAGCTAACCCACTGGT 61.780 45.833 10.70 0.00 37.98 4.00
1383 1519 1.048601 TGAAGGACAGGAAGTTCGCT 58.951 50.000 0.00 0.00 0.00 4.93
1386 1522 1.629043 AGGACAGGAAGTTCGCTGTA 58.371 50.000 20.29 0.00 31.31 2.74
1389 1525 2.166664 GGACAGGAAGTTCGCTGTAGAT 59.833 50.000 20.29 5.06 31.31 1.98
1399 1535 0.872021 CGCTGTAGATGAAGCCGTCC 60.872 60.000 0.00 0.00 35.98 4.79
1404 1540 1.065709 GTAGATGAAGCCGTCCCCAAA 60.066 52.381 0.00 0.00 0.00 3.28
1454 1757 9.507329 CCCTACAAAATGCTGATACATATTAGT 57.493 33.333 0.00 0.00 0.00 2.24
1484 1793 6.630071 TCCTTTCTTTCCAGTTTTCACAAAG 58.370 36.000 0.00 0.00 0.00 2.77
1493 1802 7.311092 TCCAGTTTTCACAAAGATCCTAGTA 57.689 36.000 0.00 0.00 0.00 1.82
1506 1815 8.304596 CAAAGATCCTAGTAGTGTTTCAGTGTA 58.695 37.037 0.00 0.00 0.00 2.90
1541 1850 6.457355 TGAGCTACTCCGTAACAATTTTACA 58.543 36.000 0.00 0.00 0.00 2.41
1550 1859 6.703607 TCCGTAACAATTTTACAGTTCGGTTA 59.296 34.615 0.58 0.00 37.30 2.85
1609 1918 8.846943 TGATTATTTTGCTTGTTAGAGTCTCA 57.153 30.769 0.00 0.00 0.00 3.27
1613 1922 4.400529 TTGCTTGTTAGAGTCTCACACA 57.599 40.909 6.66 0.68 0.00 3.72
1634 1943 0.679505 TCTTACTCAACGGCTGCAGT 59.320 50.000 16.64 0.00 0.00 4.40
1642 1959 5.611374 ACTCAACGGCTGCAGTAAATATAT 58.389 37.500 16.64 0.00 0.00 0.86
1647 1964 8.528643 TCAACGGCTGCAGTAAATATATAGTAT 58.471 33.333 16.64 0.00 0.00 2.12
1693 2012 8.941977 TGGGTATATATACGAACATTCAATTGC 58.058 33.333 15.15 0.00 34.11 3.56
1719 2038 3.242870 GGACTTGCAACAGTCTCAACTTG 60.243 47.826 16.19 0.00 42.63 3.16
1740 2059 2.682155 AGAACAGAGGCGAATTCTCC 57.318 50.000 6.34 6.34 31.96 3.71
1748 2067 1.106285 GGCGAATTCTCCCAAGCAAT 58.894 50.000 2.84 0.00 0.00 3.56
1752 2071 3.002759 GCGAATTCTCCCAAGCAATCTAC 59.997 47.826 3.52 0.00 0.00 2.59
1754 2073 4.635765 CGAATTCTCCCAAGCAATCTACAA 59.364 41.667 3.52 0.00 0.00 2.41
1756 2075 6.349280 CGAATTCTCCCAAGCAATCTACAAAA 60.349 38.462 3.52 0.00 0.00 2.44
1760 2079 8.593945 TTCTCCCAAGCAATCTACAAAAATAT 57.406 30.769 0.00 0.00 0.00 1.28
1761 2080 9.693739 TTCTCCCAAGCAATCTACAAAAATATA 57.306 29.630 0.00 0.00 0.00 0.86
1840 2260 0.034896 TCCCTGACAAAAGGAGTCGC 59.965 55.000 0.00 0.00 40.02 5.19
1853 2273 0.521735 GAGTCGCATTGGTTCCCAAC 59.478 55.000 0.00 0.00 46.95 3.77
1854 2274 0.179004 AGTCGCATTGGTTCCCAACA 60.179 50.000 0.00 0.00 46.95 3.33
1866 2286 4.283212 TGGTTCCCAACATGAGGATTTTTC 59.717 41.667 0.00 0.00 30.55 2.29
1976 2547 4.457257 ACTTAAGCTTTCCTTCATCTGCAC 59.543 41.667 3.20 0.00 34.95 4.57
2159 2731 5.242393 CCCACATCTGAATTTCAAGACAAGT 59.758 40.000 0.01 0.00 0.00 3.16
2189 2761 0.995024 ACTGATGTTCCTTCCCCTGG 59.005 55.000 0.00 0.00 0.00 4.45
2196 2768 2.448961 TGTTCCTTCCCCTGGATGAAAA 59.551 45.455 0.00 0.00 33.09 2.29
2454 4043 9.155975 CAATACTGCTATTACAGAAACAAGACT 57.844 33.333 0.00 0.00 40.25 3.24
2603 4192 8.880878 TCCAATTCTTAAAGTTTTTGGTAAGC 57.119 30.769 13.26 0.00 36.02 3.09
2621 4210 5.066634 GGTAAGCTCAATCCTTTTCTTAGCC 59.933 44.000 0.00 0.00 31.91 3.93
2701 4294 5.408299 CCAGATGAGTCACATACGTTTTGAA 59.592 40.000 0.00 0.00 39.56 2.69
2702 4295 6.092670 CCAGATGAGTCACATACGTTTTGAAT 59.907 38.462 0.00 0.00 39.56 2.57
2825 4418 8.821147 TTCAAATGATATAATTGCCTCATTGC 57.179 30.769 10.22 0.00 38.12 3.56
2856 4449 9.618890 TCTATATCCATTTCCAAGAAGAAAGTG 57.381 33.333 0.00 0.00 39.04 3.16
2872 4465 1.523758 AGTGGCGATGGTTGAAAGAC 58.476 50.000 0.00 0.00 0.00 3.01
2877 4470 2.228822 GGCGATGGTTGAAAGACAATGT 59.771 45.455 0.00 0.00 40.76 2.71
2899 4492 6.278363 TGTTTTCTATATACCCTCGAACAGC 58.722 40.000 0.00 0.00 0.00 4.40
2909 4502 5.722021 ACCCTCGAACAGCAAATTTTATT 57.278 34.783 0.00 0.00 0.00 1.40
2941 4534 7.699812 GCAAAGGCATCTAGAGTTATTTTTCTG 59.300 37.037 0.00 0.00 40.72 3.02
2943 4536 8.499403 AAGGCATCTAGAGTTATTTTTCTGAC 57.501 34.615 0.00 0.00 0.00 3.51
2971 4564 6.058183 GTCTTGCATGGATATCCTGTACTTT 58.942 40.000 22.35 0.00 36.82 2.66
2998 4591 7.326968 AGATTTTGAAGCCTTTATAGCTGTC 57.673 36.000 0.00 0.00 40.49 3.51
3031 4637 5.230306 GCGTACAACTAGTTCATTAGAGCAG 59.770 44.000 4.77 0.00 0.00 4.24
3097 4705 1.609501 GAGGCCCAAAAACCCCTCC 60.610 63.158 0.00 0.00 38.31 4.30
3197 4807 4.307032 AATTTGCATCTCCACCTACAGT 57.693 40.909 0.00 0.00 0.00 3.55
3341 5010 3.121030 CCTTCGCCGCTTGTCTGG 61.121 66.667 0.00 0.00 0.00 3.86
3472 5145 4.002506 TGCGAAGAAGCAGCGGGA 62.003 61.111 0.00 0.00 42.92 5.14
3566 5241 0.038709 CGGCCAAAATTTCGAAGCCA 60.039 50.000 19.95 0.00 40.49 4.75
3668 5495 3.374012 TACGCCGTTCCCCCGAATG 62.374 63.158 0.00 0.00 35.16 2.67
3808 5636 1.659794 CGTTGGAGTTGGCCCTTTG 59.340 57.895 0.00 0.00 0.00 2.77
3809 5637 1.367471 GTTGGAGTTGGCCCTTTGC 59.633 57.895 0.00 0.00 40.16 3.68
3810 5638 1.075674 TTGGAGTTGGCCCTTTGCA 60.076 52.632 0.00 0.00 43.89 4.08
3811 5639 0.689080 TTGGAGTTGGCCCTTTGCAA 60.689 50.000 0.00 0.00 43.89 4.08
3812 5640 0.689080 TGGAGTTGGCCCTTTGCAAA 60.689 50.000 12.14 12.14 43.89 3.68
3813 5641 0.467804 GGAGTTGGCCCTTTGCAAAA 59.532 50.000 13.84 0.00 43.89 2.44
3814 5642 1.134250 GGAGTTGGCCCTTTGCAAAAA 60.134 47.619 13.84 0.99 43.89 1.94
3815 5643 2.212652 GAGTTGGCCCTTTGCAAAAAG 58.787 47.619 13.84 8.44 43.89 2.27
3816 5644 0.662619 GTTGGCCCTTTGCAAAAAGC 59.337 50.000 19.77 19.77 43.89 3.51
3830 5658 5.376854 GCAAAAAGCACTTCTATTGGAGA 57.623 39.130 0.00 0.00 44.79 3.71
3831 5659 5.958955 GCAAAAAGCACTTCTATTGGAGAT 58.041 37.500 0.00 0.00 44.79 2.75
3832 5660 5.803967 GCAAAAAGCACTTCTATTGGAGATG 59.196 40.000 0.00 0.00 44.79 2.90
3833 5661 5.573337 AAAAGCACTTCTATTGGAGATGC 57.427 39.130 0.00 0.00 37.08 3.91
3834 5662 4.500499 AAGCACTTCTATTGGAGATGCT 57.500 40.909 6.68 6.68 43.90 3.79
3835 5663 4.070630 AGCACTTCTATTGGAGATGCTC 57.929 45.455 6.68 0.00 40.58 4.26
3836 5664 3.710677 AGCACTTCTATTGGAGATGCTCT 59.289 43.478 6.68 0.00 40.58 4.09
3837 5665 4.163839 AGCACTTCTATTGGAGATGCTCTT 59.836 41.667 6.68 0.00 40.58 2.85
3838 5666 5.365025 AGCACTTCTATTGGAGATGCTCTTA 59.635 40.000 6.68 0.00 40.58 2.10
3924 5752 1.740296 GCGGCTTGGCGAAGTTCTA 60.740 57.895 20.30 0.00 0.00 2.10
4014 5842 4.504340 GCCTCCTTGGTCAGTACTGTTTTA 60.504 45.833 21.99 0.00 38.35 1.52
4020 5848 8.266473 TCCTTGGTCAGTACTGTTTTACTTTTA 58.734 33.333 21.99 0.00 29.30 1.52
4045 5873 5.089970 TGAATGGTCTTGATCAGTACTGG 57.910 43.478 22.48 6.39 0.00 4.00
4052 5880 5.393678 GGTCTTGATCAGTACTGGTTCTCTC 60.394 48.000 22.48 3.96 0.00 3.20
4056 5884 5.325239 TGATCAGTACTGGTTCTCTCAAGA 58.675 41.667 22.48 0.00 0.00 3.02
4060 5888 5.184096 TCAGTACTGGTTCTCTCAAGACATC 59.816 44.000 22.48 0.00 0.00 3.06
4075 5904 9.895138 TCTCAAGACATCTCATCAAATGATTTA 57.105 29.630 0.00 0.00 38.85 1.40
4112 5941 9.158233 GTTGTTGCTTGTTCTGTATATAAGGTA 57.842 33.333 0.00 0.00 0.00 3.08
4142 5971 0.320374 ATGCCGAGACCGTGAGAAAA 59.680 50.000 0.00 0.00 0.00 2.29
4206 6035 2.359900 AGGCGTCATGGTTTCTGAATC 58.640 47.619 0.00 0.00 0.00 2.52
4215 6044 2.373169 TGGTTTCTGAATCCTGAGCTGT 59.627 45.455 16.27 0.00 0.00 4.40
4260 6089 3.999663 CAGATTCTGTGGAAGGTCAGTTC 59.000 47.826 5.46 0.00 34.70 3.01
4270 6099 3.406764 GAAGGTCAGTTCAGTGCTGATT 58.593 45.455 2.47 0.00 43.73 2.57
4274 6103 3.406764 GTCAGTTCAGTGCTGATTTCCT 58.593 45.455 2.47 0.00 43.73 3.36
4275 6104 3.434984 GTCAGTTCAGTGCTGATTTCCTC 59.565 47.826 2.47 0.00 43.73 3.71
4276 6105 3.326006 TCAGTTCAGTGCTGATTTCCTCT 59.674 43.478 2.47 0.00 39.64 3.69
4277 6106 3.436015 CAGTTCAGTGCTGATTTCCTCTG 59.564 47.826 2.47 2.91 39.64 3.35
4280 6109 4.090761 TCAGTGCTGATTTCCTCTGTTT 57.909 40.909 0.00 0.00 34.14 2.83
4281 6110 4.067896 TCAGTGCTGATTTCCTCTGTTTC 58.932 43.478 0.00 0.00 34.14 2.78
4282 6111 4.070716 CAGTGCTGATTTCCTCTGTTTCT 58.929 43.478 0.00 0.00 0.00 2.52
4283 6112 4.153835 CAGTGCTGATTTCCTCTGTTTCTC 59.846 45.833 0.00 0.00 0.00 2.87
4330 6159 9.569167 GGTTTATTTTTCTCCAGCAGTATAAAC 57.431 33.333 0.00 0.00 32.90 2.01
4339 6168 6.061022 TCCAGCAGTATAAACAAATCCAGA 57.939 37.500 0.00 0.00 0.00 3.86
4352 6181 4.758674 ACAAATCCAGACATGAACTGTGAG 59.241 41.667 17.80 7.84 38.54 3.51
4370 6199 2.840038 TGAGCTGGACCATGAGTAATGT 59.160 45.455 0.00 0.00 34.11 2.71
4371 6200 3.201290 GAGCTGGACCATGAGTAATGTG 58.799 50.000 0.00 0.00 34.11 3.21
4375 6209 2.017049 GGACCATGAGTAATGTGTGCC 58.983 52.381 0.00 0.00 34.11 5.01
4385 6219 0.899717 AATGTGTGCCAAGGCCGATT 60.900 50.000 8.89 0.00 41.09 3.34
4386 6220 1.315257 ATGTGTGCCAAGGCCGATTC 61.315 55.000 8.89 0.00 41.09 2.52
4388 6222 2.435938 GTGCCAAGGCCGATTCGA 60.436 61.111 7.83 0.00 41.09 3.71
4390 6224 1.819208 TGCCAAGGCCGATTCGATG 60.819 57.895 7.83 1.34 41.09 3.84
4391 6225 2.546494 GCCAAGGCCGATTCGATGG 61.546 63.158 7.83 10.94 34.56 3.51
4392 6226 1.893808 CCAAGGCCGATTCGATGGG 60.894 63.158 7.83 0.00 0.00 4.00
4393 6227 1.893808 CAAGGCCGATTCGATGGGG 60.894 63.158 7.83 0.00 0.00 4.96
4394 6228 2.375345 AAGGCCGATTCGATGGGGT 61.375 57.895 7.83 0.00 0.00 4.95
4395 6229 2.280865 GGCCGATTCGATGGGGTC 60.281 66.667 7.83 0.00 0.00 4.46
4396 6230 2.504032 GCCGATTCGATGGGGTCA 59.496 61.111 7.83 0.00 0.00 4.02
4397 6231 1.887707 GCCGATTCGATGGGGTCAC 60.888 63.158 7.83 0.00 0.00 3.67
4398 6232 1.520192 CCGATTCGATGGGGTCACA 59.480 57.895 7.83 0.00 0.00 3.58
4399 6233 0.530650 CCGATTCGATGGGGTCACAG 60.531 60.000 7.83 0.00 0.00 3.66
4400 6234 0.175760 CGATTCGATGGGGTCACAGT 59.824 55.000 0.00 0.00 0.00 3.55
4401 6235 1.802880 CGATTCGATGGGGTCACAGTC 60.803 57.143 0.00 0.00 0.00 3.51
4402 6236 1.482593 GATTCGATGGGGTCACAGTCT 59.517 52.381 0.00 0.00 0.00 3.24
4403 6237 0.895530 TTCGATGGGGTCACAGTCTC 59.104 55.000 0.00 0.00 0.00 3.36
4404 6238 0.251608 TCGATGGGGTCACAGTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
4405 6239 0.108615 CGATGGGGTCACAGTCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
4406 6240 0.976641 GATGGGGTCACAGTCTCACA 59.023 55.000 0.00 0.00 0.00 3.58
4410 6244 1.205893 GGGGTCACAGTCTCACAGATC 59.794 57.143 0.00 0.00 0.00 2.75
4412 6246 2.499289 GGGTCACAGTCTCACAGATCAT 59.501 50.000 0.00 0.00 0.00 2.45
4416 6250 5.126222 GGTCACAGTCTCACAGATCATAGAA 59.874 44.000 0.00 0.00 0.00 2.10
4451 6289 2.049248 GCGTTGCAACCATGGTGG 60.049 61.111 20.60 18.01 45.02 4.61
4463 6301 0.738762 CATGGTGGTGACGAGAGCTG 60.739 60.000 0.00 0.00 0.00 4.24
4471 6309 3.119459 TGGTGACGAGAGCTGTAATCTTC 60.119 47.826 0.00 0.00 0.00 2.87
4472 6310 3.119459 GGTGACGAGAGCTGTAATCTTCA 60.119 47.826 0.00 0.00 0.00 3.02
4489 6327 2.631160 TCAATCACCGTTTGACCACT 57.369 45.000 0.00 0.00 36.92 4.00
4495 6333 0.464916 ACCGTTTGACCACTGGAACC 60.465 55.000 0.71 0.00 0.00 3.62
4496 6334 1.503818 CCGTTTGACCACTGGAACCG 61.504 60.000 0.71 0.00 0.00 4.44
4497 6335 1.503818 CGTTTGACCACTGGAACCGG 61.504 60.000 0.00 0.00 0.00 5.28
4498 6336 1.527380 TTTGACCACTGGAACCGGC 60.527 57.895 0.00 0.00 0.00 6.13
4499 6337 3.818121 TTGACCACTGGAACCGGCG 62.818 63.158 0.00 0.00 0.00 6.46
4502 6340 4.323477 CCACTGGAACCGGCGGAA 62.323 66.667 35.78 13.86 0.00 4.30
4557 6396 2.906897 CTTTGCTGGTGCCACCGT 60.907 61.111 9.78 0.00 42.58 4.83
4558 6397 2.904866 TTTGCTGGTGCCACCGTC 60.905 61.111 9.78 3.75 42.58 4.79
4569 6410 1.816537 CCACCGTCGGATGTCTCAT 59.183 57.895 20.51 0.00 0.00 2.90
4582 6423 4.201920 GGATGTCTCATAAACTTTTCGCCC 60.202 45.833 0.00 0.00 0.00 6.13
4587 6428 0.674269 ATAAACTTTTCGCCCGCGGA 60.674 50.000 30.73 2.89 40.25 5.54
4598 6439 1.154112 CCCGCGGATTTGTTTTCGG 60.154 57.895 30.73 0.00 36.90 4.30
4612 6454 4.688021 TGTTTTCGGGAAATGTTTGAAGG 58.312 39.130 0.00 0.00 0.00 3.46
4617 6459 2.288763 CGGGAAATGTTTGAAGGTTGGG 60.289 50.000 0.00 0.00 0.00 4.12
4623 6465 2.530701 TGTTTGAAGGTTGGGTGTTGT 58.469 42.857 0.00 0.00 0.00 3.32
4624 6466 2.232452 TGTTTGAAGGTTGGGTGTTGTG 59.768 45.455 0.00 0.00 0.00 3.33
4625 6467 1.479709 TTGAAGGTTGGGTGTTGTGG 58.520 50.000 0.00 0.00 0.00 4.17
4626 6468 1.040339 TGAAGGTTGGGTGTTGTGGC 61.040 55.000 0.00 0.00 0.00 5.01
4627 6469 0.755327 GAAGGTTGGGTGTTGTGGCT 60.755 55.000 0.00 0.00 0.00 4.75
4628 6470 1.042559 AAGGTTGGGTGTTGTGGCTG 61.043 55.000 0.00 0.00 0.00 4.85
4629 6471 2.498056 GGTTGGGTGTTGTGGCTGG 61.498 63.158 0.00 0.00 0.00 4.85
4630 6472 1.454847 GTTGGGTGTTGTGGCTGGA 60.455 57.895 0.00 0.00 0.00 3.86
4631 6473 1.454847 TTGGGTGTTGTGGCTGGAC 60.455 57.895 0.00 0.00 0.00 4.02
4632 6474 2.194597 GGGTGTTGTGGCTGGACA 59.805 61.111 0.00 0.00 0.00 4.02
4643 6485 4.093743 TGTGGCTGGACAACTATCTTCTA 58.906 43.478 0.00 0.00 0.00 2.10
4644 6486 4.160439 TGTGGCTGGACAACTATCTTCTAG 59.840 45.833 0.00 0.00 0.00 2.43
4658 6532 9.531158 AACTATCTTCTAGTACTAAGTTGTGGT 57.469 33.333 12.47 2.44 0.00 4.16
4669 6543 8.431222 AGTACTAAGTTGTGGTTGGTGTAAATA 58.569 33.333 0.00 0.00 0.00 1.40
4670 6544 7.739498 ACTAAGTTGTGGTTGGTGTAAATAG 57.261 36.000 0.00 0.00 0.00 1.73
4671 6545 7.284820 ACTAAGTTGTGGTTGGTGTAAATAGT 58.715 34.615 0.00 0.00 0.00 2.12
4672 6546 7.776500 ACTAAGTTGTGGTTGGTGTAAATAGTT 59.224 33.333 0.00 0.00 0.00 2.24
4674 6548 6.801575 AGTTGTGGTTGGTGTAAATAGTTTG 58.198 36.000 0.00 0.00 0.00 2.93
4675 6549 6.603997 AGTTGTGGTTGGTGTAAATAGTTTGA 59.396 34.615 0.00 0.00 0.00 2.69
4676 6550 7.122948 AGTTGTGGTTGGTGTAAATAGTTTGAA 59.877 33.333 0.00 0.00 0.00 2.69
4677 6551 7.033530 TGTGGTTGGTGTAAATAGTTTGAAG 57.966 36.000 0.00 0.00 0.00 3.02
4679 6553 7.504238 TGTGGTTGGTGTAAATAGTTTGAAGAT 59.496 33.333 0.00 0.00 0.00 2.40
4697 6572 5.049336 TGAAGATTTGTCAACGCGGAATAAA 60.049 36.000 12.47 6.54 0.00 1.40
4708 6583 6.916387 TCAACGCGGAATAAATTTTTGTAACA 59.084 30.769 12.47 0.00 0.00 2.41
4714 6589 9.575702 GCGGAATAAATTTTTGTAACAAGTTTC 57.424 29.630 0.00 0.00 0.00 2.78
4747 6623 9.847224 AAAATGGTTATCTCAATAATACCGAGT 57.153 29.630 0.00 0.00 30.28 4.18
4748 6624 9.847224 AAATGGTTATCTCAATAATACCGAGTT 57.153 29.630 0.00 0.00 30.28 3.01
4750 6626 8.657074 TGGTTATCTCAATAATACCGAGTTTG 57.343 34.615 0.00 0.00 30.28 2.93
4752 6628 9.321562 GGTTATCTCAATAATACCGAGTTTGAA 57.678 33.333 0.00 0.00 30.28 2.69
4755 6631 7.177832 TCTCAATAATACCGAGTTTGAAGGA 57.822 36.000 0.00 0.00 0.00 3.36
4760 6636 9.503427 CAATAATACCGAGTTTGAAGGATTTTC 57.497 33.333 0.00 0.00 0.00 2.29
4761 6637 6.510879 AATACCGAGTTTGAAGGATTTTCC 57.489 37.500 0.00 0.00 36.58 3.13
4763 6639 2.492088 CCGAGTTTGAAGGATTTTCCCC 59.508 50.000 0.00 0.00 37.19 4.81
4784 6660 1.657822 TTTTTGCGCTTTGAAACCCC 58.342 45.000 9.73 0.00 0.00 4.95
4786 6662 0.755686 TTTGCGCTTTGAAACCCCAT 59.244 45.000 9.73 0.00 0.00 4.00
4787 6663 0.033228 TTGCGCTTTGAAACCCCATG 59.967 50.000 9.73 0.00 0.00 3.66
4788 6664 1.737735 GCGCTTTGAAACCCCATGC 60.738 57.895 0.00 0.00 0.00 4.06
4789 6665 1.664873 CGCTTTGAAACCCCATGCA 59.335 52.632 0.00 0.00 0.00 3.96
4791 6667 1.338011 CGCTTTGAAACCCCATGCATT 60.338 47.619 0.00 0.00 0.00 3.56
4792 6668 2.078392 GCTTTGAAACCCCATGCATTG 58.922 47.619 0.00 0.00 0.00 2.82
4793 6669 2.289569 GCTTTGAAACCCCATGCATTGA 60.290 45.455 0.00 0.00 0.00 2.57
4795 6671 4.581868 CTTTGAAACCCCATGCATTGATT 58.418 39.130 0.00 0.00 0.00 2.57
4797 6673 4.637387 TGAAACCCCATGCATTGATTTT 57.363 36.364 0.00 0.00 0.00 1.82
4799 6675 4.760715 TGAAACCCCATGCATTGATTTTTG 59.239 37.500 0.00 0.00 0.00 2.44
4800 6676 4.637387 AACCCCATGCATTGATTTTTGA 57.363 36.364 0.00 0.00 0.00 2.69
4801 6677 4.210724 ACCCCATGCATTGATTTTTGAG 57.789 40.909 0.00 0.00 0.00 3.02
4802 6678 3.054948 ACCCCATGCATTGATTTTTGAGG 60.055 43.478 0.00 0.00 0.00 3.86
4803 6679 3.054948 CCCCATGCATTGATTTTTGAGGT 60.055 43.478 0.00 0.00 0.00 3.85
4804 6680 4.186159 CCCATGCATTGATTTTTGAGGTC 58.814 43.478 0.00 0.00 0.00 3.85
4806 6682 4.628333 CCATGCATTGATTTTTGAGGTCAC 59.372 41.667 0.00 0.00 0.00 3.67
4807 6683 4.933505 TGCATTGATTTTTGAGGTCACA 57.066 36.364 0.00 0.00 0.00 3.58
4808 6684 5.471556 TGCATTGATTTTTGAGGTCACAT 57.528 34.783 0.00 0.00 0.00 3.21
4810 6686 5.221481 TGCATTGATTTTTGAGGTCACATGT 60.221 36.000 0.00 0.00 0.00 3.21
4811 6687 5.697633 GCATTGATTTTTGAGGTCACATGTT 59.302 36.000 0.00 0.00 0.00 2.71
4813 6689 7.254863 GCATTGATTTTTGAGGTCACATGTTTT 60.255 33.333 0.00 0.00 0.00 2.43
4814 6690 8.614346 CATTGATTTTTGAGGTCACATGTTTTT 58.386 29.630 0.00 0.00 0.00 1.94
4815 6691 7.769272 TGATTTTTGAGGTCACATGTTTTTC 57.231 32.000 0.00 0.00 0.00 2.29
4817 6693 7.492020 TGATTTTTGAGGTCACATGTTTTTCAG 59.508 33.333 0.00 0.00 0.00 3.02
4818 6694 4.916983 TTGAGGTCACATGTTTTTCAGG 57.083 40.909 0.00 0.00 0.00 3.86
4819 6695 3.221771 TGAGGTCACATGTTTTTCAGGG 58.778 45.455 0.00 0.00 31.56 4.45
4820 6696 2.558359 GAGGTCACATGTTTTTCAGGGG 59.442 50.000 0.00 0.00 31.94 4.79
4822 6698 2.962421 GGTCACATGTTTTTCAGGGGAA 59.038 45.455 0.00 0.00 41.98 3.97
4823 6699 3.578282 GGTCACATGTTTTTCAGGGGAAT 59.422 43.478 0.00 0.00 41.98 3.01
4825 6701 3.006752 TCACATGTTTTTCAGGGGAATGC 59.993 43.478 0.00 0.00 37.32 3.56
4826 6702 2.029110 ACATGTTTTTCAGGGGAATGCG 60.029 45.455 0.00 0.00 31.93 4.73
4827 6703 1.698506 TGTTTTTCAGGGGAATGCGT 58.301 45.000 0.00 0.00 31.93 5.24
4829 6705 2.223923 TGTTTTTCAGGGGAATGCGTTG 60.224 45.455 0.00 0.00 31.93 4.10
4830 6706 1.988293 TTTTCAGGGGAATGCGTTGA 58.012 45.000 0.00 0.00 31.93 3.18
4831 6707 1.988293 TTTCAGGGGAATGCGTTGAA 58.012 45.000 0.00 0.00 31.93 2.69
4832 6708 1.988293 TTCAGGGGAATGCGTTGAAA 58.012 45.000 0.00 0.00 0.00 2.69
4860 6788 1.196104 ATTGTTGCAAGGCCATGGCT 61.196 50.000 34.70 18.82 41.24 4.75
4874 6802 2.496871 CCATGGCTATGCACTCCAAAAA 59.503 45.455 4.19 0.00 33.04 1.94
4876 6804 2.591923 TGGCTATGCACTCCAAAAACA 58.408 42.857 0.00 0.00 0.00 2.83
4879 6807 4.176271 GGCTATGCACTCCAAAAACAATC 58.824 43.478 0.00 0.00 0.00 2.67
4892 6820 3.708563 AAACAATCTCACGTTGGTTGG 57.291 42.857 13.68 0.00 35.32 3.77
4899 6827 2.028476 TCTCACGTTGGTTGGTATCCTG 60.028 50.000 0.00 0.00 0.00 3.86
4900 6828 0.802494 CACGTTGGTTGGTATCCTGC 59.198 55.000 0.00 0.00 0.00 4.85
4903 6831 1.883275 CGTTGGTTGGTATCCTGCAAA 59.117 47.619 0.00 0.00 0.00 3.68
4904 6832 2.294791 CGTTGGTTGGTATCCTGCAAAA 59.705 45.455 0.00 0.00 0.00 2.44
4905 6833 3.243569 CGTTGGTTGGTATCCTGCAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
4958 6886 1.386533 GTCATGTGGATTCCAGGCTG 58.613 55.000 5.39 7.75 32.34 4.85
4959 6887 1.065199 GTCATGTGGATTCCAGGCTGA 60.065 52.381 17.94 6.66 32.34 4.26
4960 6888 1.848388 TCATGTGGATTCCAGGCTGAT 59.152 47.619 17.94 1.44 32.34 2.90
4962 6918 3.654321 TCATGTGGATTCCAGGCTGATAT 59.346 43.478 17.94 8.59 32.34 1.63
4964 6920 5.489997 TCATGTGGATTCCAGGCTGATATAT 59.510 40.000 17.94 3.20 32.34 0.86
5014 7163 7.472334 AGCAAAATCACTATCAACCAGATTT 57.528 32.000 0.00 0.00 39.74 2.17
5025 7177 2.679342 CCAGATTTGGCCGGGGAGA 61.679 63.158 2.18 0.00 37.73 3.71
5132 7288 2.287117 TCCCACCCATCCAGGCAT 60.287 61.111 0.00 0.00 35.39 4.40
5138 7294 0.974010 ACCCATCCAGGCATTGCTTG 60.974 55.000 13.42 13.42 35.37 4.01
5179 7335 4.903010 GGTCACACCGCCACACGT 62.903 66.667 0.00 0.00 41.42 4.49
5181 7337 4.934942 TCACACCGCCACACGTCG 62.935 66.667 0.00 0.00 41.42 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.893398 CTGGTGGCCTCGACCTAC 59.107 66.667 11.76 0.00 34.26 3.18
14 15 3.075005 GCTGGTGGCCTCGACCTA 61.075 66.667 11.76 0.00 34.26 3.08
82 83 2.027192 TGTCATAGAAGGCAAGGTGACC 60.027 50.000 0.00 0.00 36.14 4.02
86 87 3.327757 TGACTTGTCATAGAAGGCAAGGT 59.672 43.478 12.24 0.00 41.65 3.50
165 168 2.280186 GGCTCATAAGACGGGCCG 60.280 66.667 27.06 27.06 33.30 6.13
220 223 1.065345 ACTCTCGAAGATGGTCCTCGA 60.065 52.381 1.47 1.47 33.89 4.04
226 229 0.965866 TGGCGACTCTCGAAGATGGT 60.966 55.000 0.00 0.00 43.74 3.55
310 313 4.202040 TGGTTGTTGCTGATTTTCTGTGAG 60.202 41.667 0.00 0.00 0.00 3.51
375 380 0.856641 TTCGGTCTTTCGCTCAAACG 59.143 50.000 0.00 0.00 0.00 3.60
383 388 6.403333 TCAAGTGAATATTTCGGTCTTTCG 57.597 37.500 0.00 0.00 0.00 3.46
454 491 7.931948 GCCACTAGAATATTTACCTTTCAGCTA 59.068 37.037 0.00 0.00 0.00 3.32
455 492 6.768381 GCCACTAGAATATTTACCTTTCAGCT 59.232 38.462 0.00 0.00 0.00 4.24
473 510 3.943381 TCATTGATTTCAGCAGCCACTAG 59.057 43.478 0.00 0.00 0.00 2.57
474 511 3.954200 TCATTGATTTCAGCAGCCACTA 58.046 40.909 0.00 0.00 0.00 2.74
490 527 9.663904 TTCGAAGAAACTTACAGAATTTCATTG 57.336 29.630 0.00 0.00 45.90 2.82
501 538 5.404366 CGGTGAGATTTCGAAGAAACTTACA 59.596 40.000 0.00 6.18 45.90 2.41
506 543 3.323243 TCCGGTGAGATTTCGAAGAAAC 58.677 45.455 0.00 0.00 45.90 2.78
577 621 2.038952 CCAACTCCAGGATCACAGTTCA 59.961 50.000 0.00 0.00 0.00 3.18
703 777 0.179111 GAGCCGATCGACCATGTCAA 60.179 55.000 18.66 0.00 32.09 3.18
704 778 1.437573 GAGCCGATCGACCATGTCA 59.562 57.895 18.66 0.00 32.09 3.58
705 779 4.327885 GAGCCGATCGACCATGTC 57.672 61.111 18.66 0.00 0.00 3.06
805 882 3.002990 CACTGAGTACGTGCTCGAC 57.997 57.895 25.45 6.53 38.28 4.20
862 939 0.178935 GAGGAGGAGGAGGAGATGGG 60.179 65.000 0.00 0.00 0.00 4.00
876 953 1.621672 GGAGTTGCCAGGAGGAGGAG 61.622 65.000 0.00 0.00 36.89 3.69
878 955 2.674220 GGGAGTTGCCAGGAGGAGG 61.674 68.421 0.00 0.00 38.95 4.30
879 956 1.204113 AAGGGAGTTGCCAGGAGGAG 61.204 60.000 0.00 0.00 38.95 3.69
880 957 1.151810 AAGGGAGTTGCCAGGAGGA 60.152 57.895 0.00 0.00 38.95 3.71
882 959 1.078848 CGAAGGGAGTTGCCAGGAG 60.079 63.158 0.00 0.00 38.95 3.69
883 960 1.827399 GACGAAGGGAGTTGCCAGGA 61.827 60.000 0.00 0.00 38.95 3.86
884 961 1.376037 GACGAAGGGAGTTGCCAGG 60.376 63.158 0.00 0.00 38.95 4.45
885 962 0.036010 ATGACGAAGGGAGTTGCCAG 60.036 55.000 0.00 0.00 38.95 4.85
886 963 0.400213 AATGACGAAGGGAGTTGCCA 59.600 50.000 0.00 0.00 38.95 4.92
887 964 0.804989 CAATGACGAAGGGAGTTGCC 59.195 55.000 0.00 0.00 0.00 4.52
888 965 0.169009 GCAATGACGAAGGGAGTTGC 59.831 55.000 0.00 0.00 35.74 4.17
889 966 1.522668 TGCAATGACGAAGGGAGTTG 58.477 50.000 0.00 0.00 0.00 3.16
890 967 2.154462 CTTGCAATGACGAAGGGAGTT 58.846 47.619 0.00 0.00 0.00 3.01
933 1010 1.644786 CGGGAGTTTGATGGTTCGCC 61.645 60.000 0.00 0.00 37.92 5.54
934 1011 1.644786 CCGGGAGTTTGATGGTTCGC 61.645 60.000 0.00 0.00 0.00 4.70
935 1012 0.036765 TCCGGGAGTTTGATGGTTCG 60.037 55.000 0.00 0.00 0.00 3.95
941 1018 5.104109 TGGAAATCTTATCCGGGAGTTTGAT 60.104 40.000 0.00 1.16 39.98 2.57
1009 1091 4.070552 GGAACGGAGCGAGCAGGT 62.071 66.667 0.00 0.00 0.00 4.00
1151 1233 1.027357 CCCCAATCGAGAGCCAAATG 58.973 55.000 0.00 0.00 0.00 2.32
1155 1237 0.399091 AGATCCCCAATCGAGAGCCA 60.399 55.000 0.00 0.00 39.55 4.75
1183 1265 1.948145 CAGATCAGCAGCAAAGGGATC 59.052 52.381 0.00 0.00 35.70 3.36
1213 1337 5.292834 GTGGGTTAGCTTCTAACGAATTACC 59.707 44.000 0.00 5.87 0.00 2.85
1241 1365 0.035152 AGCCAATGCGAGATCCACAA 60.035 50.000 0.00 0.00 44.33 3.33
1244 1368 0.745486 CACAGCCAATGCGAGATCCA 60.745 55.000 0.00 0.00 44.33 3.41
1294 1430 2.830370 GCCCGGATGCTCCCTTTG 60.830 66.667 0.73 0.00 31.13 2.77
1383 1519 0.616395 TGGGGACGGCTTCATCTACA 60.616 55.000 0.00 0.00 0.00 2.74
1386 1522 0.322546 GTTTGGGGACGGCTTCATCT 60.323 55.000 0.00 0.00 0.00 2.90
1389 1525 1.228124 CAGTTTGGGGACGGCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
1399 1535 3.313524 GGCCTTGGCCAGTTTGGG 61.314 66.667 24.50 5.99 38.19 4.12
1404 1540 1.635817 ATACGATGGCCTTGGCCAGT 61.636 55.000 32.97 27.66 43.67 4.00
1454 1757 6.605594 TGAAAACTGGAAAGAAAGGAGCTAAA 59.394 34.615 0.00 0.00 0.00 1.85
1460 1763 6.435904 TCTTTGTGAAAACTGGAAAGAAAGGA 59.564 34.615 0.00 0.00 31.38 3.36
1484 1793 6.697892 GCATACACTGAAACACTACTAGGATC 59.302 42.308 0.00 0.00 0.00 3.36
1493 1802 3.480470 AGCAAGCATACACTGAAACACT 58.520 40.909 0.00 0.00 0.00 3.55
1527 1836 7.750354 GTAACCGAACTGTAAAATTGTTACG 57.250 36.000 0.00 0.00 31.00 3.18
1528 1837 6.300668 GCGTAACCGAACTGTAAAATTGTTAC 59.699 38.462 0.00 0.00 35.61 2.50
1529 1838 6.018425 TGCGTAACCGAACTGTAAAATTGTTA 60.018 34.615 0.00 0.00 35.63 2.41
1530 1839 5.207033 GCGTAACCGAACTGTAAAATTGTT 58.793 37.500 0.00 0.00 35.63 2.83
1541 1850 0.389426 AAGCGATGCGTAACCGAACT 60.389 50.000 3.17 0.00 35.63 3.01
1609 1918 1.687123 AGCCGTTGAGTAAGAGTGTGT 59.313 47.619 0.00 0.00 0.00 3.72
1613 1922 0.679505 TGCAGCCGTTGAGTAAGAGT 59.320 50.000 0.00 0.00 0.00 3.24
1618 1927 2.823924 TTTACTGCAGCCGTTGAGTA 57.176 45.000 15.27 0.00 0.00 2.59
1647 1964 7.086685 ACCCAAGAATCTAGTTACCTTGAAA 57.913 36.000 13.34 0.00 37.10 2.69
1693 2012 0.034059 AGACTGTTGCAAGTCCCTCG 59.966 55.000 13.72 0.00 46.51 4.63
1719 2038 2.933260 GGAGAATTCGCCTCTGTTCTTC 59.067 50.000 19.89 0.00 31.51 2.87
1748 2067 9.391006 AGTTGCTCCGAATTATATTTTTGTAGA 57.609 29.630 0.00 0.00 0.00 2.59
1752 2071 8.687824 AACAGTTGCTCCGAATTATATTTTTG 57.312 30.769 0.00 0.00 0.00 2.44
1754 2073 9.705290 AAAAACAGTTGCTCCGAATTATATTTT 57.295 25.926 0.00 0.00 0.00 1.82
1756 2075 9.783256 GTAAAAACAGTTGCTCCGAATTATATT 57.217 29.630 0.00 0.00 0.00 1.28
1760 2079 5.531659 TGGTAAAAACAGTTGCTCCGAATTA 59.468 36.000 0.00 0.00 0.00 1.40
1761 2080 4.339814 TGGTAAAAACAGTTGCTCCGAATT 59.660 37.500 0.00 0.00 0.00 2.17
1763 2082 3.280295 TGGTAAAAACAGTTGCTCCGAA 58.720 40.909 0.00 0.00 0.00 4.30
1765 2084 3.701532 TTGGTAAAAACAGTTGCTCCG 57.298 42.857 0.00 0.00 0.00 4.63
1853 2273 8.910944 ACATCATCTTTAGGAAAAATCCTCATG 58.089 33.333 0.00 1.21 41.12 3.07
1866 2286 7.443575 CCTCCATGAAACTACATCATCTTTAGG 59.556 40.741 0.00 0.00 35.38 2.69
1976 2547 3.561725 GGAAATCCTGACGCCATTTCTAG 59.438 47.826 0.00 0.00 36.93 2.43
2189 2761 7.584987 ACTTAGCAAGTGTGTGTATTTTCATC 58.415 34.615 1.44 0.00 41.01 2.92
2244 2816 3.868077 CACTAGTCAAGGCATAACTCTGC 59.132 47.826 0.00 0.00 41.53 4.26
2433 4022 6.870965 AGTGAGTCTTGTTTCTGTAATAGCAG 59.129 38.462 0.00 0.00 37.81 4.24
2454 4043 6.348786 GCACATAGCTTCTCATTTTCAAGTGA 60.349 38.462 0.00 0.00 41.15 3.41
2603 4192 4.260948 GCATCGGCTAAGAAAAGGATTGAG 60.261 45.833 0.00 0.00 36.96 3.02
2621 4210 2.300433 TCAGGGAAAATGATGGCATCG 58.700 47.619 21.65 5.08 32.35 3.84
2778 4371 7.512130 TGAAATCTCATATACCATTGCAGTCT 58.488 34.615 0.00 0.00 0.00 3.24
2780 4373 8.523915 TTTGAAATCTCATATACCATTGCAGT 57.476 30.769 0.00 0.00 0.00 4.40
2782 4375 9.134055 TCATTTGAAATCTCATATACCATTGCA 57.866 29.630 0.00 0.00 0.00 4.08
2820 4413 7.898918 TGGAAATGGATATAGAAATGGCAATG 58.101 34.615 0.00 0.00 0.00 2.82
2825 4418 9.578576 TCTTCTTGGAAATGGATATAGAAATGG 57.421 33.333 0.00 0.00 0.00 3.16
2856 4449 2.228822 ACATTGTCTTTCAACCATCGCC 59.771 45.455 0.00 0.00 38.97 5.54
2872 4465 8.657074 TGTTCGAGGGTATATAGAAAACATTG 57.343 34.615 0.00 0.00 0.00 2.82
2877 4470 6.474140 TGCTGTTCGAGGGTATATAGAAAA 57.526 37.500 0.00 0.00 0.00 2.29
2925 4518 5.731591 ACCCCGTCAGAAAAATAACTCTAG 58.268 41.667 0.00 0.00 0.00 2.43
2930 4523 4.615223 GCAAGACCCCGTCAGAAAAATAAC 60.615 45.833 0.00 0.00 34.60 1.89
2941 4534 0.468226 TATCCATGCAAGACCCCGTC 59.532 55.000 0.00 0.00 0.00 4.79
2943 4536 1.611673 GGATATCCATGCAAGACCCCG 60.612 57.143 17.34 0.00 35.64 5.73
2971 4564 7.394359 ACAGCTATAAAGGCTTCAAAATCTTGA 59.606 33.333 0.00 0.00 39.87 3.02
2989 4582 1.651987 GCAAAGGTGCGACAGCTATA 58.348 50.000 11.04 0.00 41.59 1.31
2990 4583 2.471255 GCAAAGGTGCGACAGCTAT 58.529 52.632 11.04 1.63 41.59 2.97
3031 4637 5.485620 TGCATCTACATCATCTATTGGAGC 58.514 41.667 0.00 0.00 0.00 4.70
3097 4705 3.812262 TGCATCTACATCATCTGTTGGG 58.188 45.455 0.00 0.00 39.39 4.12
3129 4738 0.991920 TCAGGGAGGCGGAGATTTTT 59.008 50.000 0.00 0.00 0.00 1.94
3130 4739 0.543749 CTCAGGGAGGCGGAGATTTT 59.456 55.000 0.00 0.00 0.00 1.82
3132 4741 0.105246 ATCTCAGGGAGGCGGAGATT 60.105 55.000 0.00 0.00 43.87 2.40
3197 4807 2.669434 GCGACTGCCGTTTTTACATCTA 59.331 45.455 0.00 0.00 41.15 1.98
3320 4963 3.296709 GACAAGCGGCGAAGGAGGA 62.297 63.158 12.98 0.00 0.00 3.71
3322 4965 2.097038 CAGACAAGCGGCGAAGGAG 61.097 63.158 12.98 0.00 0.00 3.69
3323 4966 2.048222 CAGACAAGCGGCGAAGGA 60.048 61.111 12.98 0.00 0.00 3.36
3454 5127 3.793144 CCCGCTGCTTCTTCGCAC 61.793 66.667 0.00 0.00 35.74 5.34
3543 5218 1.464376 TTCGAAATTTTGGCCGGCCA 61.464 50.000 44.23 44.23 45.63 5.36
3764 5592 5.457140 TGATGCAAAACGGAGATGTAAAAC 58.543 37.500 0.00 0.00 0.00 2.43
3808 5636 5.376854 TCTCCAATAGAAGTGCTTTTTGC 57.623 39.130 0.00 0.00 43.25 3.68
3809 5637 5.803967 GCATCTCCAATAGAAGTGCTTTTTG 59.196 40.000 0.00 0.00 37.29 2.44
3810 5638 5.713861 AGCATCTCCAATAGAAGTGCTTTTT 59.286 36.000 0.00 0.00 44.54 1.94
3811 5639 5.259632 AGCATCTCCAATAGAAGTGCTTTT 58.740 37.500 0.00 0.00 44.54 2.27
3812 5640 4.853007 AGCATCTCCAATAGAAGTGCTTT 58.147 39.130 0.00 0.00 44.54 3.51
3813 5641 4.450053 GAGCATCTCCAATAGAAGTGCTT 58.550 43.478 4.99 0.00 46.08 3.91
3829 5657 4.937620 TCCATTCACAACAGTAAGAGCATC 59.062 41.667 0.00 0.00 0.00 3.91
3830 5658 4.910195 TCCATTCACAACAGTAAGAGCAT 58.090 39.130 0.00 0.00 0.00 3.79
3831 5659 4.350368 TCCATTCACAACAGTAAGAGCA 57.650 40.909 0.00 0.00 0.00 4.26
3832 5660 4.697352 ACATCCATTCACAACAGTAAGAGC 59.303 41.667 0.00 0.00 0.00 4.09
3833 5661 6.808008 AACATCCATTCACAACAGTAAGAG 57.192 37.500 0.00 0.00 0.00 2.85
3834 5662 8.862325 ATTAACATCCATTCACAACAGTAAGA 57.138 30.769 0.00 0.00 0.00 2.10
3835 5663 9.912634 AAATTAACATCCATTCACAACAGTAAG 57.087 29.630 0.00 0.00 0.00 2.34
3836 5664 9.906660 GAAATTAACATCCATTCACAACAGTAA 57.093 29.630 0.00 0.00 0.00 2.24
3837 5665 8.519526 GGAAATTAACATCCATTCACAACAGTA 58.480 33.333 3.95 0.00 35.71 2.74
3838 5666 7.015098 TGGAAATTAACATCCATTCACAACAGT 59.985 33.333 6.91 0.00 40.74 3.55
3879 5707 8.107399 TGGGATAGTAATAGTAGAACACATCG 57.893 38.462 0.00 0.00 0.00 3.84
4014 5842 9.082313 ACTGATCAAGACCATTCAAATAAAAGT 57.918 29.630 0.00 0.00 0.00 2.66
4020 5848 6.600822 CCAGTACTGATCAAGACCATTCAAAT 59.399 38.462 24.68 0.00 0.00 2.32
4035 5863 5.080337 TGTCTTGAGAGAACCAGTACTGAT 58.920 41.667 24.68 12.43 32.66 2.90
4045 5873 7.548427 TCATTTGATGAGATGTCTTGAGAGAAC 59.452 37.037 0.00 0.00 33.59 3.01
4052 5880 9.512435 GGTTAAATCATTTGATGAGATGTCTTG 57.488 33.333 0.00 0.00 43.53 3.02
4075 5904 6.998673 AGAACAAGCAACAACTATTAGAGGTT 59.001 34.615 0.00 0.00 0.00 3.50
4112 5941 2.749621 GGTCTCGGCATCACAAAATCTT 59.250 45.455 0.00 0.00 0.00 2.40
4142 5971 4.341520 ACGGTTTCTTCTGTGAAGTACTCT 59.658 41.667 0.00 0.00 0.00 3.24
4206 6035 4.813161 CCATTAACAGTATGACAGCTCAGG 59.187 45.833 0.00 0.00 39.69 3.86
4215 6044 3.884895 CCACCAGCCATTAACAGTATGA 58.115 45.455 0.00 0.00 39.69 2.15
4260 6089 4.070716 AGAAACAGAGGAAATCAGCACTG 58.929 43.478 0.00 0.00 0.00 3.66
4270 6099 4.503296 CGAAGAAAGGGAGAAACAGAGGAA 60.503 45.833 0.00 0.00 0.00 3.36
4274 6103 3.244112 GGACGAAGAAAGGGAGAAACAGA 60.244 47.826 0.00 0.00 0.00 3.41
4275 6104 3.067833 GGACGAAGAAAGGGAGAAACAG 58.932 50.000 0.00 0.00 0.00 3.16
4276 6105 2.704065 AGGACGAAGAAAGGGAGAAACA 59.296 45.455 0.00 0.00 0.00 2.83
4277 6106 3.404224 AGGACGAAGAAAGGGAGAAAC 57.596 47.619 0.00 0.00 0.00 2.78
4280 6109 2.563179 CAGAAGGACGAAGAAAGGGAGA 59.437 50.000 0.00 0.00 0.00 3.71
4281 6110 2.300437 ACAGAAGGACGAAGAAAGGGAG 59.700 50.000 0.00 0.00 0.00 4.30
4282 6111 2.299297 GACAGAAGGACGAAGAAAGGGA 59.701 50.000 0.00 0.00 0.00 4.20
4283 6112 2.689646 GACAGAAGGACGAAGAAAGGG 58.310 52.381 0.00 0.00 0.00 3.95
4330 6159 4.379186 GCTCACAGTTCATGTCTGGATTTG 60.379 45.833 18.90 11.35 41.41 2.32
4339 6168 1.271054 GGTCCAGCTCACAGTTCATGT 60.271 52.381 0.00 0.00 45.43 3.21
4352 6181 2.679837 CACACATTACTCATGGTCCAGC 59.320 50.000 0.00 0.00 37.17 4.85
4370 6199 2.535485 ATCGAATCGGCCTTGGCACA 62.535 55.000 14.04 0.00 0.00 4.57
4371 6200 1.819632 ATCGAATCGGCCTTGGCAC 60.820 57.895 14.04 2.31 0.00 5.01
4375 6209 1.893808 CCCCATCGAATCGGCCTTG 60.894 63.158 1.76 0.00 0.00 3.61
4385 6219 0.251608 TGAGACTGTGACCCCATCGA 60.252 55.000 0.00 0.00 0.00 3.59
4386 6220 0.108615 GTGAGACTGTGACCCCATCG 60.109 60.000 0.00 0.00 0.00 3.84
4388 6222 0.979665 CTGTGAGACTGTGACCCCAT 59.020 55.000 0.00 0.00 0.00 4.00
4390 6224 1.205893 GATCTGTGAGACTGTGACCCC 59.794 57.143 0.00 0.00 0.00 4.95
4391 6225 1.895798 TGATCTGTGAGACTGTGACCC 59.104 52.381 0.00 0.00 0.00 4.46
4392 6226 3.883830 ATGATCTGTGAGACTGTGACC 57.116 47.619 0.00 0.00 0.00 4.02
4393 6227 5.826601 TCTATGATCTGTGAGACTGTGAC 57.173 43.478 0.00 0.00 0.00 3.67
4394 6228 6.682362 GCATTCTATGATCTGTGAGACTGTGA 60.682 42.308 0.00 0.00 0.00 3.58
4395 6229 5.462729 GCATTCTATGATCTGTGAGACTGTG 59.537 44.000 0.00 0.00 0.00 3.66
4396 6230 5.363292 AGCATTCTATGATCTGTGAGACTGT 59.637 40.000 0.00 0.00 0.00 3.55
4397 6231 5.845103 AGCATTCTATGATCTGTGAGACTG 58.155 41.667 0.00 0.00 0.00 3.51
4398 6232 6.294675 GCTAGCATTCTATGATCTGTGAGACT 60.295 42.308 10.63 0.00 0.00 3.24
4399 6233 5.863397 GCTAGCATTCTATGATCTGTGAGAC 59.137 44.000 10.63 0.00 0.00 3.36
4400 6234 5.774184 AGCTAGCATTCTATGATCTGTGAGA 59.226 40.000 18.83 0.00 0.00 3.27
4401 6235 5.865013 CAGCTAGCATTCTATGATCTGTGAG 59.135 44.000 18.83 0.00 0.00 3.51
4402 6236 5.537674 TCAGCTAGCATTCTATGATCTGTGA 59.462 40.000 18.83 3.41 0.00 3.58
4403 6237 5.780984 TCAGCTAGCATTCTATGATCTGTG 58.219 41.667 18.83 0.77 0.00 3.66
4404 6238 6.014413 ACATCAGCTAGCATTCTATGATCTGT 60.014 38.462 18.83 9.70 27.53 3.41
4405 6239 6.399743 ACATCAGCTAGCATTCTATGATCTG 58.600 40.000 18.83 9.10 27.53 2.90
4406 6240 6.608539 ACATCAGCTAGCATTCTATGATCT 57.391 37.500 18.83 0.96 27.53 2.75
4410 6244 7.348808 CTGTAACATCAGCTAGCATTCTATG 57.651 40.000 18.83 13.97 0.00 2.23
4451 6289 4.098055 TGAAGATTACAGCTCTCGTCAC 57.902 45.455 0.00 0.00 0.00 3.67
4452 6290 4.783764 TTGAAGATTACAGCTCTCGTCA 57.216 40.909 0.00 0.00 0.00 4.35
4463 6301 5.180492 TGGTCAAACGGTGATTGAAGATTAC 59.820 40.000 0.00 0.00 38.44 1.89
4471 6309 1.266718 CCAGTGGTCAAACGGTGATTG 59.733 52.381 0.00 0.00 38.90 2.67
4472 6310 1.142060 TCCAGTGGTCAAACGGTGATT 59.858 47.619 9.54 0.00 38.90 2.57
4489 6327 4.238654 AACGTTCCGCCGGTTCCA 62.239 61.111 1.63 0.00 0.00 3.53
4498 6336 0.808453 ATATGGCGTCCAACGTTCCG 60.808 55.000 0.00 2.22 44.73 4.30
4499 6337 0.655733 CATATGGCGTCCAACGTTCC 59.344 55.000 0.00 0.00 44.73 3.62
4500 6338 1.062002 CACATATGGCGTCCAACGTTC 59.938 52.381 7.80 0.00 44.73 3.95
4501 6339 1.083489 CACATATGGCGTCCAACGTT 58.917 50.000 7.80 0.00 44.73 3.99
4502 6340 0.248012 TCACATATGGCGTCCAACGT 59.752 50.000 7.80 0.00 44.73 3.99
4514 6352 1.479942 CCATGGCCTGCCTTCACATAT 60.480 52.381 9.97 0.00 36.94 1.78
4557 6396 4.328983 GCGAAAAGTTTATGAGACATCCGA 59.671 41.667 0.00 0.00 0.00 4.55
4558 6397 4.494199 GGCGAAAAGTTTATGAGACATCCG 60.494 45.833 0.00 0.00 0.00 4.18
4569 6410 0.674269 ATCCGCGGGCGAAAAGTTTA 60.674 50.000 27.83 0.12 42.83 2.01
4582 6423 0.238817 TTCCCGAAAACAAATCCGCG 59.761 50.000 0.00 0.00 0.00 6.46
4587 6428 6.259829 CCTTCAAACATTTCCCGAAAACAAAT 59.740 34.615 0.00 0.00 33.56 2.32
4598 6439 3.133901 ACACCCAACCTTCAAACATTTCC 59.866 43.478 0.00 0.00 0.00 3.13
4612 6454 1.454847 TCCAGCCACAACACCCAAC 60.455 57.895 0.00 0.00 0.00 3.77
4623 6465 4.353777 ACTAGAAGATAGTTGTCCAGCCA 58.646 43.478 0.00 0.00 0.00 4.75
4624 6466 5.595133 AGTACTAGAAGATAGTTGTCCAGCC 59.405 44.000 0.00 0.00 0.00 4.85
4625 6467 6.702716 AGTACTAGAAGATAGTTGTCCAGC 57.297 41.667 0.00 0.00 0.00 4.85
4626 6468 9.398538 ACTTAGTACTAGAAGATAGTTGTCCAG 57.601 37.037 11.55 0.13 0.00 3.86
4627 6469 9.750783 AACTTAGTACTAGAAGATAGTTGTCCA 57.249 33.333 11.55 0.00 0.00 4.02
4631 6473 9.790389 CCACAACTTAGTACTAGAAGATAGTTG 57.210 37.037 26.63 26.63 44.02 3.16
4632 6474 9.531158 ACCACAACTTAGTACTAGAAGATAGTT 57.469 33.333 11.55 10.11 0.00 2.24
4635 6477 8.746530 CCAACCACAACTTAGTACTAGAAGATA 58.253 37.037 11.55 0.00 0.00 1.98
4637 6479 6.552350 ACCAACCACAACTTAGTACTAGAAGA 59.448 38.462 11.55 0.00 0.00 2.87
4639 6481 6.098695 ACACCAACCACAACTTAGTACTAGAA 59.901 38.462 2.23 0.00 0.00 2.10
4643 6485 4.765813 ACACCAACCACAACTTAGTACT 57.234 40.909 0.00 0.00 0.00 2.73
4644 6486 6.923928 TTTACACCAACCACAACTTAGTAC 57.076 37.500 0.00 0.00 0.00 2.73
4654 6528 7.266922 TCTTCAAACTATTTACACCAACCAC 57.733 36.000 0.00 0.00 0.00 4.16
4656 6530 9.191995 CAAATCTTCAAACTATTTACACCAACC 57.808 33.333 0.00 0.00 0.00 3.77
4658 6532 9.959749 GACAAATCTTCAAACTATTTACACCAA 57.040 29.630 0.00 0.00 0.00 3.67
4669 6543 3.548014 CCGCGTTGACAAATCTTCAAACT 60.548 43.478 4.92 0.00 34.78 2.66
4670 6544 2.719046 CCGCGTTGACAAATCTTCAAAC 59.281 45.455 4.92 0.00 34.78 2.93
4671 6545 2.614520 TCCGCGTTGACAAATCTTCAAA 59.385 40.909 4.92 0.00 34.78 2.69
4672 6546 2.214347 TCCGCGTTGACAAATCTTCAA 58.786 42.857 4.92 0.00 0.00 2.69
4674 6548 2.961522 TTCCGCGTTGACAAATCTTC 57.038 45.000 4.92 0.00 0.00 2.87
4675 6549 5.365403 TTTATTCCGCGTTGACAAATCTT 57.635 34.783 4.92 0.00 0.00 2.40
4676 6550 5.560966 ATTTATTCCGCGTTGACAAATCT 57.439 34.783 4.92 0.00 0.00 2.40
4677 6551 6.626199 AAATTTATTCCGCGTTGACAAATC 57.374 33.333 4.92 0.00 0.00 2.17
4679 6553 6.255887 ACAAAAATTTATTCCGCGTTGACAAA 59.744 30.769 4.92 0.00 0.00 2.83
4742 6618 2.492088 GGGGAAAATCCTTCAAACTCGG 59.508 50.000 0.00 0.00 36.57 4.63
4743 6619 3.421844 AGGGGAAAATCCTTCAAACTCG 58.578 45.455 0.00 0.00 36.57 4.18
4745 6621 6.575244 AAAAAGGGGAAAATCCTTCAAACT 57.425 33.333 0.00 0.00 43.24 2.66
4770 6646 1.737735 GCATGGGGTTTCAAAGCGC 60.738 57.895 9.34 9.34 41.57 5.92
4771 6647 0.247185 ATGCATGGGGTTTCAAAGCG 59.753 50.000 0.00 0.00 0.00 4.68
4772 6648 2.078392 CAATGCATGGGGTTTCAAAGC 58.922 47.619 0.00 0.00 0.00 3.51
4773 6649 3.681593 TCAATGCATGGGGTTTCAAAG 57.318 42.857 0.00 0.00 0.00 2.77
4774 6650 4.637387 AATCAATGCATGGGGTTTCAAA 57.363 36.364 0.00 0.00 0.00 2.69
4775 6651 4.637387 AAATCAATGCATGGGGTTTCAA 57.363 36.364 0.00 0.00 0.00 2.69
4776 6652 4.637387 AAAATCAATGCATGGGGTTTCA 57.363 36.364 0.00 0.00 0.00 2.69
4777 6653 5.002516 TCAAAAATCAATGCATGGGGTTTC 58.997 37.500 0.00 0.00 0.00 2.78
4779 6655 4.566070 CCTCAAAAATCAATGCATGGGGTT 60.566 41.667 0.00 0.00 0.00 4.11
4780 6656 3.054948 CCTCAAAAATCAATGCATGGGGT 60.055 43.478 0.00 0.00 0.00 4.95
4782 6658 4.186159 GACCTCAAAAATCAATGCATGGG 58.814 43.478 0.00 0.00 0.00 4.00
4783 6659 4.628333 GTGACCTCAAAAATCAATGCATGG 59.372 41.667 0.00 0.00 0.00 3.66
4784 6660 5.231702 TGTGACCTCAAAAATCAATGCATG 58.768 37.500 0.00 0.00 0.00 4.06
4786 6662 4.933505 TGTGACCTCAAAAATCAATGCA 57.066 36.364 0.00 0.00 0.00 3.96
4787 6663 5.232463 ACATGTGACCTCAAAAATCAATGC 58.768 37.500 0.00 0.00 0.00 3.56
4788 6664 7.718272 AAACATGTGACCTCAAAAATCAATG 57.282 32.000 0.00 0.00 0.00 2.82
4789 6665 8.735692 AAAAACATGTGACCTCAAAAATCAAT 57.264 26.923 0.00 0.00 0.00 2.57
4791 6667 7.326454 TGAAAAACATGTGACCTCAAAAATCA 58.674 30.769 0.00 0.00 0.00 2.57
4792 6668 7.042523 CCTGAAAAACATGTGACCTCAAAAATC 60.043 37.037 0.00 0.00 0.00 2.17
4793 6669 6.762661 CCTGAAAAACATGTGACCTCAAAAAT 59.237 34.615 0.00 0.00 0.00 1.82
4795 6671 5.395103 CCCTGAAAAACATGTGACCTCAAAA 60.395 40.000 0.00 0.00 0.00 2.44
4797 6673 3.636300 CCCTGAAAAACATGTGACCTCAA 59.364 43.478 0.00 0.00 0.00 3.02
4799 6675 2.558359 CCCCTGAAAAACATGTGACCTC 59.442 50.000 0.00 0.00 0.00 3.85
4800 6676 2.176798 TCCCCTGAAAAACATGTGACCT 59.823 45.455 0.00 0.00 0.00 3.85
4801 6677 2.593026 TCCCCTGAAAAACATGTGACC 58.407 47.619 0.00 0.00 0.00 4.02
4802 6678 4.559153 CATTCCCCTGAAAAACATGTGAC 58.441 43.478 0.00 0.00 33.32 3.67
4803 6679 3.006752 GCATTCCCCTGAAAAACATGTGA 59.993 43.478 0.00 0.00 33.32 3.58
4804 6680 3.328505 GCATTCCCCTGAAAAACATGTG 58.671 45.455 0.00 0.00 33.32 3.21
4806 6682 2.029110 ACGCATTCCCCTGAAAAACATG 60.029 45.455 0.00 0.00 33.32 3.21
4807 6683 2.247358 ACGCATTCCCCTGAAAAACAT 58.753 42.857 0.00 0.00 33.32 2.71
4808 6684 1.698506 ACGCATTCCCCTGAAAAACA 58.301 45.000 0.00 0.00 33.32 2.83
4810 6686 2.311463 TCAACGCATTCCCCTGAAAAA 58.689 42.857 0.00 0.00 33.32 1.94
4811 6687 1.988293 TCAACGCATTCCCCTGAAAA 58.012 45.000 0.00 0.00 33.32 2.29
4813 6689 1.611491 GTTTCAACGCATTCCCCTGAA 59.389 47.619 0.00 0.00 34.33 3.02
4814 6690 1.243902 GTTTCAACGCATTCCCCTGA 58.756 50.000 0.00 0.00 0.00 3.86
4815 6691 0.243636 GGTTTCAACGCATTCCCCTG 59.756 55.000 0.00 0.00 0.00 4.45
4817 6693 1.589630 GGGTTTCAACGCATTCCCC 59.410 57.895 2.04 0.00 41.07 4.81
4818 6694 1.182385 TGGGGTTTCAACGCATTCCC 61.182 55.000 8.79 2.24 42.95 3.97
4819 6695 0.243636 CTGGGGTTTCAACGCATTCC 59.756 55.000 8.79 0.00 42.95 3.01
4820 6696 0.243636 CCTGGGGTTTCAACGCATTC 59.756 55.000 8.79 0.00 42.95 2.67
4822 6698 2.275380 GCCTGGGGTTTCAACGCAT 61.275 57.895 8.79 0.00 42.95 4.73
4823 6699 2.909965 GCCTGGGGTTTCAACGCA 60.910 61.111 8.79 0.00 42.95 5.24
4825 6701 0.038343 CAATGCCTGGGGTTTCAACG 60.038 55.000 0.00 0.00 0.00 4.10
4826 6702 1.047801 ACAATGCCTGGGGTTTCAAC 58.952 50.000 0.00 0.00 0.00 3.18
4827 6703 1.415659 CAACAATGCCTGGGGTTTCAA 59.584 47.619 0.00 0.00 0.00 2.69
4829 6705 3.912899 CAACAATGCCTGGGGTTTC 57.087 52.632 0.00 0.00 0.00 2.78
4848 6774 0.754217 AGTGCATAGCCATGGCCTTG 60.754 55.000 33.14 28.50 43.17 3.61
4860 6788 5.334802 CGTGAGATTGTTTTTGGAGTGCATA 60.335 40.000 0.00 0.00 0.00 3.14
4874 6802 2.341846 ACCAACCAACGTGAGATTGT 57.658 45.000 0.00 0.00 0.00 2.71
4876 6804 3.263425 AGGATACCAACCAACGTGAGATT 59.737 43.478 0.00 0.00 37.17 2.40
4879 6807 2.346803 CAGGATACCAACCAACGTGAG 58.653 52.381 0.00 0.00 37.17 3.51
4909 6837 9.623000 GCTCATCTTTAAGTTATACCCCTTAAA 57.377 33.333 0.00 0.00 39.54 1.52
4910 6838 7.929785 CGCTCATCTTTAAGTTATACCCCTTAA 59.070 37.037 0.00 0.00 32.75 1.85
4911 6839 7.439381 CGCTCATCTTTAAGTTATACCCCTTA 58.561 38.462 0.00 0.00 0.00 2.69
4912 6840 6.289064 CGCTCATCTTTAAGTTATACCCCTT 58.711 40.000 0.00 0.00 0.00 3.95
4913 6841 5.742255 GCGCTCATCTTTAAGTTATACCCCT 60.742 44.000 0.00 0.00 0.00 4.79
4915 6843 4.451435 GGCGCTCATCTTTAAGTTATACCC 59.549 45.833 7.64 0.00 0.00 3.69
4918 6846 4.940463 ACGGCGCTCATCTTTAAGTTATA 58.060 39.130 6.90 0.00 0.00 0.98
4919 6847 3.793559 ACGGCGCTCATCTTTAAGTTAT 58.206 40.909 6.90 0.00 0.00 1.89
4920 6848 3.184541 GACGGCGCTCATCTTTAAGTTA 58.815 45.455 6.90 0.00 0.00 2.24
4921 6849 2.000447 GACGGCGCTCATCTTTAAGTT 59.000 47.619 6.90 0.00 0.00 2.66
4922 6850 1.067142 TGACGGCGCTCATCTTTAAGT 60.067 47.619 6.90 0.00 0.00 2.24
4982 7029 8.992073 GGTTGATAGTGATTTTGCTTTCAAATT 58.008 29.630 0.00 0.00 41.37 1.82
4985 7032 7.014134 TCTGGTTGATAGTGATTTTGCTTTCAA 59.986 33.333 0.00 0.00 32.90 2.69
4988 7035 6.899393 TCTGGTTGATAGTGATTTTGCTTT 57.101 33.333 0.00 0.00 0.00 3.51
4990 7037 7.318141 CAAATCTGGTTGATAGTGATTTTGCT 58.682 34.615 0.00 0.00 35.84 3.91
4992 7039 6.532657 GCCAAATCTGGTTGATAGTGATTTTG 59.467 38.462 0.00 0.00 45.53 2.44
4993 7040 6.351286 GGCCAAATCTGGTTGATAGTGATTTT 60.351 38.462 0.00 0.00 45.53 1.82
5044 7200 2.281484 GCGTTCCTGCTTGGGTCA 60.281 61.111 0.00 0.00 36.20 4.02
5070 7226 3.782244 GGTTCACTCGCTGCGCTG 61.782 66.667 18.65 14.59 0.00 5.18
5110 7266 1.379044 CTGGATGGGTGGGACAAGC 60.379 63.158 0.00 0.00 44.16 4.01
5111 7267 1.304282 CCTGGATGGGTGGGACAAG 59.696 63.158 0.00 0.00 44.16 3.16
5122 7278 1.135199 GTGTCAAGCAATGCCTGGATG 60.135 52.381 0.00 0.00 0.00 3.51
5132 7288 2.970324 GGCGTCCGTGTCAAGCAA 60.970 61.111 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.