Multiple sequence alignment - TraesCS7B01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G361600 chr7B 100.000 4279 0 0 1 4279 623817034 623821312 0.000000e+00 7902.0
1 TraesCS7B01G361600 chr7B 84.495 832 100 19 1006 1830 623795758 623796567 0.000000e+00 795.0
2 TraesCS7B01G361600 chr7B 81.879 1054 87 42 3081 4048 623757650 623758685 0.000000e+00 793.0
3 TraesCS7B01G361600 chr7B 90.844 557 35 12 2475 3027 707011803 707012347 0.000000e+00 732.0
4 TraesCS7B01G361600 chr7B 93.208 427 23 1 1476 1896 623757229 623757655 1.310000e-174 623.0
5 TraesCS7B01G361600 chr7B 80.137 876 138 18 1036 1896 138753127 138753981 4.700000e-174 621.0
6 TraesCS7B01G361600 chr7B 91.124 338 25 5 2136 2473 707011306 707011638 1.810000e-123 453.0
7 TraesCS7B01G361600 chr7B 85.965 285 33 2 3081 3358 138753976 138754260 9.000000e-77 298.0
8 TraesCS7B01G361600 chr7B 90.566 212 4 10 1935 2139 707011013 707011215 2.540000e-67 267.0
9 TraesCS7B01G361600 chr7B 91.083 157 12 2 346 500 371477252 371477096 1.210000e-50 211.0
10 TraesCS7B01G361600 chr7B 94.737 38 1 1 3043 3079 707012349 707012386 1.660000e-04 58.4
11 TraesCS7B01G361600 chr7D 95.017 863 31 3 501 1360 568271839 568272692 0.000000e+00 1345.0
12 TraesCS7B01G361600 chr7D 87.179 897 90 17 1006 1896 568257956 568258833 0.000000e+00 996.0
13 TraesCS7B01G361600 chr7D 91.887 530 35 3 3081 3602 568273611 568274140 0.000000e+00 734.0
14 TraesCS7B01G361600 chr7D 92.293 519 33 2 1385 1896 568273098 568273616 0.000000e+00 730.0
15 TraesCS7B01G361600 chr7D 80.974 862 131 18 1050 1896 174293751 174294594 0.000000e+00 652.0
16 TraesCS7B01G361600 chr7D 89.802 353 32 3 1 351 573717936 573717586 2.350000e-122 449.0
17 TraesCS7B01G361600 chr7D 86.765 204 15 6 1889 2081 517561378 517561176 2.590000e-52 217.0
18 TraesCS7B01G361600 chr7D 92.969 128 4 1 3632 3754 568274798 568274925 9.450000e-42 182.0
19 TraesCS7B01G361600 chr7D 79.079 239 37 10 4046 4279 568271254 568271484 7.410000e-33 152.0
20 TraesCS7B01G361600 chr7D 100.000 33 0 0 3601 3633 568274751 568274783 1.280000e-05 62.1
21 TraesCS7B01G361600 chr7A 81.555 862 126 24 1050 1896 176274971 176275814 0.000000e+00 680.0
22 TraesCS7B01G361600 chr7A 76.952 525 64 35 2202 2700 54672810 54673303 3.300000e-61 246.0
23 TraesCS7B01G361600 chr7A 89.119 193 11 7 1897 2081 266580268 266580078 9.250000e-57 231.0
24 TraesCS7B01G361600 chr7A 86.500 200 16 7 1898 2088 593308680 593308877 4.340000e-50 209.0
25 TraesCS7B01G361600 chr7A 86.842 190 15 5 1898 2078 54670224 54670412 2.020000e-48 204.0
26 TraesCS7B01G361600 chr7A 89.308 159 17 0 346 504 108225197 108225039 2.610000e-47 200.0
27 TraesCS7B01G361600 chr7A 83.077 130 13 7 2055 2183 54670962 54671083 4.520000e-20 110.0
28 TraesCS7B01G361600 chr7A 82.400 125 13 7 2290 2413 182380342 182380458 2.720000e-17 100.0
29 TraesCS7B01G361600 chr5D 91.525 354 26 4 1 352 230014185 230013834 6.430000e-133 484.0
30 TraesCS7B01G361600 chr5D 90.725 345 31 1 1 345 412713847 412714190 3.900000e-125 459.0
31 TraesCS7B01G361600 chr5D 90.462 346 32 1 1 346 311378904 311379248 5.040000e-124 455.0
32 TraesCS7B01G361600 chr5D 90.435 345 30 3 1 345 467857332 467857673 6.520000e-123 451.0
33 TraesCS7B01G361600 chr5D 91.026 156 12 2 1927 2081 528401242 528401088 4.340000e-50 209.0
34 TraesCS7B01G361600 chr5D 83.077 130 12 7 2055 2183 185254635 185254755 4.520000e-20 110.0
35 TraesCS7B01G361600 chr1D 91.066 347 29 2 1 347 364113494 364113838 6.480000e-128 468.0
36 TraesCS7B01G361600 chr1B 90.517 348 31 2 1 347 333472979 333473325 3.900000e-125 459.0
37 TraesCS7B01G361600 chr6D 90.113 354 30 5 1 353 131623352 131623701 5.040000e-124 455.0
38 TraesCS7B01G361600 chr6D 97.297 37 1 0 3038 3074 32411603 32411639 3.570000e-06 63.9
39 TraesCS7B01G361600 chr4D 90.145 345 32 2 4 347 276216213 276215870 8.440000e-122 448.0
40 TraesCS7B01G361600 chr4A 86.364 396 22 17 2484 2879 446608008 446607645 1.850000e-108 403.0
41 TraesCS7B01G361600 chr4A 91.852 270 12 7 1933 2201 446608660 446608400 6.760000e-98 368.0
42 TraesCS7B01G361600 chr4A 78.512 121 15 8 4048 4166 63815566 63815677 7.680000e-08 69.4
43 TraesCS7B01G361600 chr2A 89.313 262 17 6 1934 2194 1819694 1819443 6.900000e-83 318.0
44 TraesCS7B01G361600 chr2A 77.273 528 63 35 2202 2703 578036064 578035568 1.530000e-64 257.0
45 TraesCS7B01G361600 chr2A 86.695 233 20 4 2202 2433 577443227 577443005 9.190000e-62 248.0
46 TraesCS7B01G361600 chr2A 91.515 165 13 1 346 510 744996321 744996158 4.310000e-55 226.0
47 TraesCS7B01G361600 chr2A 86.528 193 16 5 1898 2081 577445811 577445620 2.020000e-48 204.0
48 TraesCS7B01G361600 chr2A 85.586 111 9 5 2073 2183 578037894 578037791 4.520000e-20 110.0
49 TraesCS7B01G361600 chr2A 84.821 112 8 5 2073 2183 577442021 577441918 2.100000e-18 104.0
50 TraesCS7B01G361600 chr2A 78.899 109 12 6 2907 3009 578035267 578035164 3.570000e-06 63.9
51 TraesCS7B01G361600 chr2D 85.978 271 20 7 2202 2464 561214244 561214504 1.520000e-69 274.0
52 TraesCS7B01G361600 chr2D 76.733 202 28 14 2632 2827 561214602 561214790 1.270000e-15 95.3
53 TraesCS7B01G361600 chr6B 80.702 399 34 17 2202 2573 68204289 68204671 1.960000e-68 270.0
54 TraesCS7B01G361600 chr6B 76.996 526 60 35 2202 2703 578001560 578001072 1.190000e-60 244.0
55 TraesCS7B01G361600 chr6B 92.025 163 10 2 350 510 28037319 28037480 4.310000e-55 226.0
56 TraesCS7B01G361600 chr6B 89.032 155 12 2 346 495 713751484 713751330 2.030000e-43 187.0
57 TraesCS7B01G361600 chr6B 83.846 130 12 7 2055 2183 578003386 578003265 9.720000e-22 115.0
58 TraesCS7B01G361600 chr3A 79.221 385 46 22 2202 2573 684761010 684761373 1.990000e-58 237.0
59 TraesCS7B01G361600 chr3A 74.403 293 56 12 1607 1887 194700998 194701283 1.630000e-19 108.0
60 TraesCS7B01G361600 chr2B 93.548 155 10 0 346 500 53969632 53969478 9.250000e-57 231.0
61 TraesCS7B01G361600 chr2B 91.837 147 12 0 354 500 733729525 733729671 5.610000e-49 206.0
62 TraesCS7B01G361600 chr3B 91.824 159 13 0 346 504 444207960 444208118 5.570000e-54 222.0
63 TraesCS7B01G361600 chr5B 89.744 156 12 2 346 500 216838075 216838227 3.380000e-46 196.0
64 TraesCS7B01G361600 chr5B 72.178 381 85 16 1531 1896 565492637 565492263 3.520000e-16 97.1
65 TraesCS7B01G361600 chr5B 72.063 383 83 20 1531 1896 565502307 565501932 4.560000e-15 93.5
66 TraesCS7B01G361600 chr5A 80.899 178 18 9 2238 2413 368129698 368129861 4.490000e-25 126.0
67 TraesCS7B01G361600 chr1A 90.698 86 8 0 2202 2287 488094032 488093947 9.720000e-22 115.0
68 TraesCS7B01G361600 chr1A 84.416 77 8 2 2632 2704 488076165 488076089 5.940000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G361600 chr7B 623817034 623821312 4278 False 7902.000000 7902 100.000000 1 4279 1 chr7B.!!$F2 4278
1 TraesCS7B01G361600 chr7B 623795758 623796567 809 False 795.000000 795 84.495000 1006 1830 1 chr7B.!!$F1 824
2 TraesCS7B01G361600 chr7B 623757229 623758685 1456 False 708.000000 793 87.543500 1476 4048 2 chr7B.!!$F4 2572
3 TraesCS7B01G361600 chr7B 138753127 138754260 1133 False 459.500000 621 83.051000 1036 3358 2 chr7B.!!$F3 2322
4 TraesCS7B01G361600 chr7B 707011013 707012386 1373 False 377.600000 732 91.817750 1935 3079 4 chr7B.!!$F5 1144
5 TraesCS7B01G361600 chr7D 568257956 568258833 877 False 996.000000 996 87.179000 1006 1896 1 chr7D.!!$F2 890
6 TraesCS7B01G361600 chr7D 174293751 174294594 843 False 652.000000 652 80.974000 1050 1896 1 chr7D.!!$F1 846
7 TraesCS7B01G361600 chr7D 568271254 568274925 3671 False 534.183333 1345 91.874167 501 4279 6 chr7D.!!$F3 3778
8 TraesCS7B01G361600 chr7A 176274971 176275814 843 False 680.000000 680 81.555000 1050 1896 1 chr7A.!!$F1 846
9 TraesCS7B01G361600 chr4A 446607645 446608660 1015 True 385.500000 403 89.108000 1933 2879 2 chr4A.!!$R1 946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1077 0.179116 CACATCTCGCTAGCTGCTGT 60.179 55.0 13.43 10.26 40.11 4.40 F
1400 1883 0.034059 AGACTCCACGAAAGGTGCAG 59.966 55.0 0.00 0.00 45.62 4.41 F
1918 2413 0.034089 GGGGTGGAGTCAGGATTTGG 60.034 60.0 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2394 0.034089 CCAAATCCTGACTCCACCCC 60.034 60.0 0.00 0.00 0.00 4.95 R
3226 4081 0.403271 AACAGATGGGCAACTGCTCT 59.597 50.0 2.75 0.00 43.37 4.09 R
3874 5431 0.601311 GACCTCGTAGGCATGGCATC 60.601 60.0 22.64 12.33 39.63 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
50 51 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
51 52 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
52 53 5.186409 AGCTGAAACATATCATGGCAACTTT 59.814 36.000 0.00 0.00 37.61 2.66
54 55 6.694411 GCTGAAACATATCATGGCAACTTTAG 59.306 38.462 0.00 0.00 37.61 1.85
56 57 7.537715 TGAAACATATCATGGCAACTTTAGTG 58.462 34.615 0.00 0.00 37.61 2.74
57 58 7.176515 TGAAACATATCATGGCAACTTTAGTGT 59.823 33.333 0.00 0.00 37.61 3.55
59 60 8.574251 AACATATCATGGCAACTTTAGTGTAA 57.426 30.769 0.00 0.00 37.61 2.41
60 61 8.574251 ACATATCATGGCAACTTTAGTGTAAA 57.426 30.769 0.00 0.00 37.61 2.01
61 62 8.458843 ACATATCATGGCAACTTTAGTGTAAAC 58.541 33.333 0.00 0.00 37.61 2.01
63 64 6.892658 TCATGGCAACTTTAGTGTAAACAT 57.107 33.333 0.00 0.00 37.61 2.71
64 65 6.908825 TCATGGCAACTTTAGTGTAAACATC 58.091 36.000 0.00 0.00 37.61 3.06
65 66 6.488344 TCATGGCAACTTTAGTGTAAACATCA 59.512 34.615 0.00 0.00 37.61 3.07
67 68 6.676950 TGGCAACTTTAGTGTAAACATCATG 58.323 36.000 0.00 0.00 37.61 3.07
69 70 6.801862 GGCAACTTTAGTGTAAACATCATGAC 59.198 38.462 0.00 0.00 0.00 3.06
70 71 7.359595 GCAACTTTAGTGTAAACATCATGACA 58.640 34.615 0.00 0.00 0.00 3.58
71 72 7.860373 GCAACTTTAGTGTAAACATCATGACAA 59.140 33.333 0.00 0.00 0.00 3.18
72 73 9.897744 CAACTTTAGTGTAAACATCATGACAAT 57.102 29.630 0.00 0.00 0.00 2.71
89 90 6.762702 TGACAATTCATGTGCAATAGACAT 57.237 33.333 0.00 0.00 44.12 3.06
98 99 6.579666 ATGTGCAATAGACATGACAACTTT 57.420 33.333 0.00 0.00 32.68 2.66
99 100 6.389830 TGTGCAATAGACATGACAACTTTT 57.610 33.333 0.00 0.00 0.00 2.27
102 103 7.860373 TGTGCAATAGACATGACAACTTTTAAC 59.140 33.333 0.00 0.00 0.00 2.01
103 104 7.059488 GTGCAATAGACATGACAACTTTTAACG 59.941 37.037 0.00 0.00 0.00 3.18
105 106 7.268447 GCAATAGACATGACAACTTTTAACGAC 59.732 37.037 0.00 0.00 0.00 4.34
106 107 7.956420 ATAGACATGACAACTTTTAACGACA 57.044 32.000 0.00 0.00 0.00 4.35
109 110 7.531716 AGACATGACAACTTTTAACGACAAAA 58.468 30.769 0.00 0.00 0.00 2.44
110 111 8.024285 AGACATGACAACTTTTAACGACAAAAA 58.976 29.630 0.00 0.00 0.00 1.94
150 151 7.549615 TTGATACGAGATCTAGTTTCGAAGA 57.450 36.000 13.99 0.00 37.73 2.87
151 152 7.731882 TGATACGAGATCTAGTTTCGAAGAT 57.268 36.000 13.99 0.00 37.73 2.40
152 153 7.798801 TGATACGAGATCTAGTTTCGAAGATC 58.201 38.462 13.99 14.39 45.61 2.75
172 173 1.847818 TCGACGCGAGGGATTTAATG 58.152 50.000 15.93 0.00 0.00 1.90
173 174 0.859232 CGACGCGAGGGATTTAATGG 59.141 55.000 15.93 0.00 0.00 3.16
174 175 1.805120 CGACGCGAGGGATTTAATGGT 60.805 52.381 15.93 0.00 0.00 3.55
175 176 1.597663 GACGCGAGGGATTTAATGGTG 59.402 52.381 15.93 0.00 0.00 4.17
177 178 2.285083 CGCGAGGGATTTAATGGTGAA 58.715 47.619 0.00 0.00 0.00 3.18
178 179 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
180 181 3.489229 GCGAGGGATTTAATGGTGAAAGC 60.489 47.826 0.00 0.00 0.00 3.51
181 182 3.242739 CGAGGGATTTAATGGTGAAAGCG 60.243 47.826 0.00 0.00 36.92 4.68
182 183 3.023832 AGGGATTTAATGGTGAAAGCGG 58.976 45.455 0.00 0.00 36.92 5.52
183 184 3.020984 GGGATTTAATGGTGAAAGCGGA 58.979 45.455 0.00 0.00 36.92 5.54
185 186 4.261614 GGGATTTAATGGTGAAAGCGGATC 60.262 45.833 0.00 0.00 36.92 3.36
186 187 4.580580 GGATTTAATGGTGAAAGCGGATCT 59.419 41.667 0.00 0.00 36.92 2.75
188 189 5.560966 TTTAATGGTGAAAGCGGATCTTC 57.439 39.130 0.00 0.00 36.92 2.87
189 190 2.787473 ATGGTGAAAGCGGATCTTCA 57.213 45.000 0.00 0.00 36.92 3.02
191 192 3.071874 TGGTGAAAGCGGATCTTCAAT 57.928 42.857 0.00 0.00 36.92 2.57
192 193 3.009723 TGGTGAAAGCGGATCTTCAATC 58.990 45.455 0.00 0.00 36.92 2.67
193 194 2.030946 GGTGAAAGCGGATCTTCAATCG 59.969 50.000 0.00 0.00 32.88 3.34
195 196 2.093711 TGAAAGCGGATCTTCAATCGGA 60.094 45.455 0.00 0.00 32.88 4.55
198 199 3.199880 AGCGGATCTTCAATCGGATTT 57.800 42.857 0.00 0.00 0.00 2.17
199 200 3.545703 AGCGGATCTTCAATCGGATTTT 58.454 40.909 0.00 0.00 0.00 1.82
200 201 3.947834 AGCGGATCTTCAATCGGATTTTT 59.052 39.130 0.00 0.00 0.00 1.94
201 202 4.035675 AGCGGATCTTCAATCGGATTTTTC 59.964 41.667 0.00 0.00 0.00 2.29
202 203 4.201910 GCGGATCTTCAATCGGATTTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
203 204 5.506317 GCGGATCTTCAATCGGATTTTTCAT 60.506 40.000 0.00 0.00 0.00 2.57
204 205 6.498304 CGGATCTTCAATCGGATTTTTCATT 58.502 36.000 0.00 0.00 0.00 2.57
205 206 6.974622 CGGATCTTCAATCGGATTTTTCATTT 59.025 34.615 0.00 0.00 0.00 2.32
206 207 8.128582 CGGATCTTCAATCGGATTTTTCATTTA 58.871 33.333 0.00 0.00 0.00 1.40
207 208 9.801873 GGATCTTCAATCGGATTTTTCATTTAA 57.198 29.630 0.00 0.00 0.00 1.52
271 272 2.408271 ATGCATTCATGAGGTGACGT 57.592 45.000 12.75 0.00 36.32 4.34
273 274 0.729116 GCATTCATGAGGTGACGTGG 59.271 55.000 12.75 0.00 36.32 4.94
274 275 0.729116 CATTCATGAGGTGACGTGGC 59.271 55.000 0.00 0.00 36.32 5.01
275 276 0.740868 ATTCATGAGGTGACGTGGCG 60.741 55.000 0.00 0.00 36.32 5.69
276 277 3.490759 CATGAGGTGACGTGGCGC 61.491 66.667 0.00 0.00 0.00 6.53
278 279 3.939837 ATGAGGTGACGTGGCGCAG 62.940 63.158 10.83 1.82 0.00 5.18
279 280 4.664677 GAGGTGACGTGGCGCAGT 62.665 66.667 10.83 5.82 0.00 4.40
281 282 4.664677 GGTGACGTGGCGCAGTCT 62.665 66.667 23.47 0.00 38.16 3.24
282 283 3.406361 GTGACGTGGCGCAGTCTG 61.406 66.667 23.47 0.00 38.16 3.51
286 287 4.156622 CGTGGCGCAGTCTGCATG 62.157 66.667 24.13 10.25 45.36 4.06
288 289 2.281692 TGGCGCAGTCTGCATGTT 60.282 55.556 24.13 0.00 45.36 2.71
289 290 1.003959 TGGCGCAGTCTGCATGTTA 60.004 52.632 24.13 3.18 45.36 2.41
290 291 0.392863 TGGCGCAGTCTGCATGTTAT 60.393 50.000 24.13 0.00 45.36 1.89
291 292 1.134551 TGGCGCAGTCTGCATGTTATA 60.135 47.619 24.13 0.76 45.36 0.98
292 293 1.528586 GGCGCAGTCTGCATGTTATAG 59.471 52.381 24.13 6.68 45.36 1.31
293 294 1.528586 GCGCAGTCTGCATGTTATAGG 59.471 52.381 24.13 5.98 45.36 2.57
294 295 2.138320 CGCAGTCTGCATGTTATAGGG 58.862 52.381 24.13 0.31 45.36 3.53
296 297 2.138320 CAGTCTGCATGTTATAGGGCG 58.862 52.381 0.00 0.00 0.00 6.13
297 298 1.762957 AGTCTGCATGTTATAGGGCGT 59.237 47.619 0.00 0.00 0.00 5.68
298 299 1.867233 GTCTGCATGTTATAGGGCGTG 59.133 52.381 0.00 0.00 0.00 5.34
300 301 1.599071 CTGCATGTTATAGGGCGTGTG 59.401 52.381 0.00 0.00 0.00 3.82
301 302 0.944386 GCATGTTATAGGGCGTGTGG 59.056 55.000 0.00 0.00 0.00 4.17
302 303 0.944386 CATGTTATAGGGCGTGTGGC 59.056 55.000 0.00 0.00 42.51 5.01
320 321 2.520458 CAGGTTTGGCTCCCACCA 59.480 61.111 7.03 0.00 38.16 4.17
321 322 1.903404 CAGGTTTGGCTCCCACCAC 60.903 63.158 7.03 0.00 40.19 4.16
322 323 2.197324 GGTTTGGCTCCCACCACA 59.803 61.111 0.00 0.00 40.19 4.17
323 324 1.228862 GGTTTGGCTCCCACCACAT 60.229 57.895 0.00 0.00 40.19 3.21
326 327 0.827089 TTTGGCTCCCACCACATGTG 60.827 55.000 19.31 19.31 45.01 3.21
327 328 2.005606 TTGGCTCCCACCACATGTGT 62.006 55.000 23.79 9.81 43.85 3.72
328 329 1.973281 GGCTCCCACCACATGTGTG 60.973 63.158 23.79 19.71 43.85 3.82
337 338 1.501741 CACATGTGTGGGCGTTAGC 59.498 57.895 18.03 0.00 42.10 3.09
339 340 2.549019 CACATGTGTGGGCGTTAGCAT 61.549 52.381 18.03 0.00 41.74 3.79
340 341 4.025692 CACATGTGTGGGCGTTAGCATT 62.026 50.000 18.03 0.00 41.74 3.56
354 355 5.696724 GCGTTAGCATTGTCCTATGATTAGT 59.303 40.000 0.00 0.00 44.35 2.24
355 356 6.866770 GCGTTAGCATTGTCCTATGATTAGTA 59.133 38.462 0.00 0.00 44.35 1.82
356 357 7.062371 GCGTTAGCATTGTCCTATGATTAGTAG 59.938 40.741 0.00 0.00 44.35 2.57
357 358 7.062371 CGTTAGCATTGTCCTATGATTAGTAGC 59.938 40.741 0.00 0.00 0.00 3.58
359 360 6.462500 AGCATTGTCCTATGATTAGTAGCTG 58.538 40.000 0.00 0.00 0.00 4.24
360 361 5.121454 GCATTGTCCTATGATTAGTAGCTGC 59.879 44.000 0.00 0.00 0.00 5.25
362 363 7.606349 CATTGTCCTATGATTAGTAGCTGCTA 58.394 38.462 7.53 7.53 0.00 3.49
363 364 7.597288 TTGTCCTATGATTAGTAGCTGCTAA 57.403 36.000 23.95 23.95 35.68 3.09
364 365 7.782897 TGTCCTATGATTAGTAGCTGCTAAT 57.217 36.000 30.02 30.02 42.44 1.73
365 366 8.195165 TGTCCTATGATTAGTAGCTGCTAATT 57.805 34.615 30.11 20.80 40.55 1.40
371 372 7.715265 TGATTAGTAGCTGCTAATTAACTGC 57.285 36.000 30.11 19.60 40.55 4.40
372 373 7.500992 TGATTAGTAGCTGCTAATTAACTGCT 58.499 34.615 30.11 19.85 40.55 4.24
373 374 8.638873 TGATTAGTAGCTGCTAATTAACTGCTA 58.361 33.333 30.11 18.23 40.55 3.49
376 377 7.721286 AGTAGCTGCTAATTAACTGCTAATG 57.279 36.000 21.77 3.01 42.54 1.90
377 378 6.708054 AGTAGCTGCTAATTAACTGCTAATGG 59.292 38.462 21.77 0.00 42.54 3.16
379 380 6.302269 AGCTGCTAATTAACTGCTAATGGAT 58.698 36.000 16.00 0.00 39.03 3.41
380 381 7.453393 AGCTGCTAATTAACTGCTAATGGATA 58.547 34.615 16.00 0.00 39.03 2.59
381 382 7.605691 AGCTGCTAATTAACTGCTAATGGATAG 59.394 37.037 16.00 0.00 39.03 2.08
383 384 8.607441 TGCTAATTAACTGCTAATGGATAGTG 57.393 34.615 0.00 0.00 33.87 2.74
384 385 7.661437 TGCTAATTAACTGCTAATGGATAGTGG 59.339 37.037 0.00 0.00 33.87 4.00
385 386 7.878127 GCTAATTAACTGCTAATGGATAGTGGA 59.122 37.037 0.00 0.00 33.87 4.02
387 388 6.553953 TTAACTGCTAATGGATAGTGGACA 57.446 37.500 0.00 0.00 33.87 4.02
388 389 4.408182 ACTGCTAATGGATAGTGGACAC 57.592 45.455 0.00 0.00 33.87 3.67
389 390 3.181475 ACTGCTAATGGATAGTGGACACG 60.181 47.826 0.00 0.00 36.20 4.49
390 391 2.764010 TGCTAATGGATAGTGGACACGT 59.236 45.455 0.00 0.00 36.20 4.49
391 392 3.955551 TGCTAATGGATAGTGGACACGTA 59.044 43.478 0.00 0.00 36.20 3.57
393 394 4.202080 GCTAATGGATAGTGGACACGTACA 60.202 45.833 0.00 0.00 36.20 2.90
394 395 4.386867 AATGGATAGTGGACACGTACAG 57.613 45.455 0.00 0.00 36.20 2.74
396 397 3.423749 TGGATAGTGGACACGTACAGAA 58.576 45.455 0.00 0.00 36.20 3.02
399 400 5.221481 TGGATAGTGGACACGTACAGAAAAA 60.221 40.000 0.00 0.00 36.20 1.94
427 428 9.793252 GAAAGAAAATAAGATGAAGCTAATGCA 57.207 29.630 0.00 0.00 42.74 3.96
446 447 3.758755 CATACATGCAAGCTAGGGAGA 57.241 47.619 0.00 0.00 0.00 3.71
447 448 4.077300 CATACATGCAAGCTAGGGAGAA 57.923 45.455 0.00 0.00 0.00 2.87
448 449 4.454678 CATACATGCAAGCTAGGGAGAAA 58.545 43.478 0.00 0.00 0.00 2.52
449 450 3.659183 ACATGCAAGCTAGGGAGAAAT 57.341 42.857 0.00 0.00 0.00 2.17
450 451 3.973425 ACATGCAAGCTAGGGAGAAATT 58.027 40.909 0.00 0.00 0.00 1.82
451 452 3.698040 ACATGCAAGCTAGGGAGAAATTG 59.302 43.478 0.00 0.00 0.00 2.32
453 454 3.084039 TGCAAGCTAGGGAGAAATTGTG 58.916 45.455 0.00 0.00 0.00 3.33
456 457 1.017387 GCTAGGGAGAAATTGTGCGG 58.983 55.000 0.00 0.00 0.00 5.69
457 458 1.406887 GCTAGGGAGAAATTGTGCGGA 60.407 52.381 0.00 0.00 0.00 5.54
458 459 2.746472 GCTAGGGAGAAATTGTGCGGAT 60.746 50.000 0.00 0.00 0.00 4.18
459 460 2.044123 AGGGAGAAATTGTGCGGATC 57.956 50.000 0.00 0.00 0.00 3.36
460 461 1.561542 AGGGAGAAATTGTGCGGATCT 59.438 47.619 0.00 0.00 0.00 2.75
461 462 1.672881 GGGAGAAATTGTGCGGATCTG 59.327 52.381 0.00 0.00 0.00 2.90
464 465 3.426695 GGAGAAATTGTGCGGATCTGTTG 60.427 47.826 2.89 0.00 0.00 3.33
465 466 2.095059 AGAAATTGTGCGGATCTGTTGC 60.095 45.455 2.89 0.00 0.00 4.17
466 467 1.538047 AATTGTGCGGATCTGTTGCT 58.462 45.000 2.89 0.00 0.00 3.91
467 468 1.538047 ATTGTGCGGATCTGTTGCTT 58.462 45.000 2.89 0.00 0.00 3.91
468 469 2.177394 TTGTGCGGATCTGTTGCTTA 57.823 45.000 2.89 0.00 0.00 3.09
470 471 1.804151 TGTGCGGATCTGTTGCTTAAC 59.196 47.619 2.89 0.00 0.00 2.01
471 472 2.076863 GTGCGGATCTGTTGCTTAACT 58.923 47.619 2.89 0.00 0.00 2.24
474 475 2.742053 GCGGATCTGTTGCTTAACTTCA 59.258 45.455 2.89 0.00 0.00 3.02
476 477 4.142600 GCGGATCTGTTGCTTAACTTCAAT 60.143 41.667 2.89 0.00 0.00 2.57
477 478 5.064707 GCGGATCTGTTGCTTAACTTCAATA 59.935 40.000 2.89 0.00 0.00 1.90
478 479 6.478588 CGGATCTGTTGCTTAACTTCAATAC 58.521 40.000 0.00 0.00 0.00 1.89
480 481 6.092259 GGATCTGTTGCTTAACTTCAATACGT 59.908 38.462 0.00 0.00 0.00 3.57
481 482 6.223138 TCTGTTGCTTAACTTCAATACGTG 57.777 37.500 0.00 0.00 0.00 4.49
482 483 5.756347 TCTGTTGCTTAACTTCAATACGTGT 59.244 36.000 0.00 0.00 0.00 4.49
483 484 5.743467 TGTTGCTTAACTTCAATACGTGTG 58.257 37.500 0.00 0.00 0.00 3.82
484 485 5.144359 GTTGCTTAACTTCAATACGTGTGG 58.856 41.667 0.00 0.00 0.00 4.17
486 487 5.057819 TGCTTAACTTCAATACGTGTGGAA 58.942 37.500 0.00 0.00 0.00 3.53
487 488 5.178623 TGCTTAACTTCAATACGTGTGGAAG 59.821 40.000 23.50 23.50 41.83 3.46
488 489 5.600908 TTAACTTCAATACGTGTGGAAGC 57.399 39.130 24.65 0.00 40.21 3.86
490 491 4.530710 ACTTCAATACGTGTGGAAGCTA 57.469 40.909 24.65 0.00 40.21 3.32
491 492 4.495422 ACTTCAATACGTGTGGAAGCTAG 58.505 43.478 24.65 6.91 40.21 3.42
492 493 2.888594 TCAATACGTGTGGAAGCTAGC 58.111 47.619 6.62 6.62 0.00 3.42
494 495 2.295253 ATACGTGTGGAAGCTAGCAC 57.705 50.000 18.83 10.38 0.00 4.40
495 496 0.963225 TACGTGTGGAAGCTAGCACA 59.037 50.000 18.83 9.61 32.62 4.57
496 497 0.319900 ACGTGTGGAAGCTAGCACAG 60.320 55.000 18.83 8.71 32.62 3.66
497 498 0.319900 CGTGTGGAAGCTAGCACAGT 60.320 55.000 18.83 0.00 32.62 3.55
499 500 0.321671 TGTGGAAGCTAGCACAGTCC 59.678 55.000 18.83 17.04 0.00 3.85
501 502 1.065854 GTGGAAGCTAGCACAGTCCAT 60.066 52.381 23.79 0.00 0.00 3.41
504 505 4.039245 GTGGAAGCTAGCACAGTCCATATA 59.961 45.833 23.79 6.59 0.00 0.86
606 692 1.323412 TACAATTTGCAGCGGGTTGT 58.677 45.000 12.10 12.10 36.94 3.32
693 782 1.134560 CGCCACCAGTAGTTAGACTCC 59.865 57.143 0.00 0.00 0.00 3.85
708 797 1.101049 ACTCCTGGTGTTTGCCAACG 61.101 55.000 0.00 0.00 38.18 4.10
722 811 6.642950 TGTTTGCCAACGGAAATAAATTAGTG 59.357 34.615 0.00 0.00 35.40 2.74
723 812 6.576662 TTGCCAACGGAAATAAATTAGTGA 57.423 33.333 0.00 0.00 0.00 3.41
724 813 5.945155 TGCCAACGGAAATAAATTAGTGAC 58.055 37.500 0.00 0.00 0.00 3.67
725 814 5.473846 TGCCAACGGAAATAAATTAGTGACA 59.526 36.000 0.00 0.00 0.00 3.58
741 830 1.215655 GACATACATCTCGCGGTGCC 61.216 60.000 6.13 0.00 0.00 5.01
848 937 1.286501 CTCGCGGCAGCAAGTAAATA 58.713 50.000 10.08 0.00 45.49 1.40
860 949 3.062254 GCAAGTAAATAGTACGCGACGAC 60.062 47.826 15.93 7.88 0.00 4.34
940 1029 8.497910 ACTCCACTATATAAGAACATCCATGT 57.502 34.615 0.00 0.00 44.20 3.21
978 1067 1.448540 CCCACAGGACACATCTCGC 60.449 63.158 0.00 0.00 33.47 5.03
988 1077 0.179116 CACATCTCGCTAGCTGCTGT 60.179 55.000 13.43 10.26 40.11 4.40
1015 1104 1.967779 TCACAATGTCCTCTTCGTCCA 59.032 47.619 0.00 0.00 0.00 4.02
1101 1190 3.063704 ATGTCCGGGTCGCACGTA 61.064 61.111 0.00 0.00 0.00 3.57
1167 1256 3.309954 GCAAATACATCAAGTCCGAGACC 59.690 47.826 1.06 0.00 32.18 3.85
1295 1384 5.474578 ACTGATGCTAGTGAAGTCAAAGA 57.525 39.130 0.00 0.00 0.00 2.52
1335 1424 2.358737 GACCAGGACAGGCAACCG 60.359 66.667 0.00 0.00 37.17 4.44
1365 1848 2.750637 AGCAGATGCAGCAGCCAC 60.751 61.111 16.19 0.00 45.16 5.01
1366 1849 3.060000 GCAGATGCAGCAGCCACA 61.060 61.111 8.30 0.00 41.13 4.17
1369 1852 0.945099 CAGATGCAGCAGCCACATAG 59.055 55.000 7.13 0.00 41.13 2.23
1383 1866 2.171237 CCACATAGGCACATTCTCCAGA 59.829 50.000 0.00 0.00 0.00 3.86
1384 1867 3.201290 CACATAGGCACATTCTCCAGAC 58.799 50.000 0.00 0.00 0.00 3.51
1385 1868 3.110705 ACATAGGCACATTCTCCAGACT 58.889 45.455 0.00 0.00 0.00 3.24
1386 1869 3.133721 ACATAGGCACATTCTCCAGACTC 59.866 47.826 0.00 0.00 0.00 3.36
1387 1870 0.908198 AGGCACATTCTCCAGACTCC 59.092 55.000 0.00 0.00 0.00 3.85
1389 1872 1.677217 GGCACATTCTCCAGACTCCAC 60.677 57.143 0.00 0.00 0.00 4.02
1398 1881 0.951040 CCAGACTCCACGAAAGGTGC 60.951 60.000 0.00 0.00 45.62 5.01
1399 1882 0.249868 CAGACTCCACGAAAGGTGCA 60.250 55.000 0.00 0.00 45.62 4.57
1400 1883 0.034059 AGACTCCACGAAAGGTGCAG 59.966 55.000 0.00 0.00 45.62 4.41
1401 1884 1.569479 GACTCCACGAAAGGTGCAGC 61.569 60.000 8.11 8.11 45.62 5.25
1402 1885 1.597854 CTCCACGAAAGGTGCAGCA 60.598 57.895 19.63 0.00 45.62 4.41
1403 1886 0.957395 CTCCACGAAAGGTGCAGCAT 60.957 55.000 19.63 2.39 45.62 3.79
1434 1917 5.296283 CGCTCAATTCATCAAGAGAAAGGAT 59.704 40.000 0.00 0.00 0.00 3.24
1459 1942 3.181442 GGAGGAATCCCTTTACCTTAGGC 60.181 52.174 0.00 0.00 44.53 3.93
1501 1984 1.668919 GCGATGTCTCCGTGTCAAAGA 60.669 52.381 0.00 0.00 0.00 2.52
1533 2016 3.124921 CCAATCCCACCGCACGTC 61.125 66.667 0.00 0.00 0.00 4.34
1575 2064 0.687354 ACCAGCATCTCGGACAACTT 59.313 50.000 0.00 0.00 0.00 2.66
1677 2166 1.070786 GTCACCGGTCTTCAAGGCA 59.929 57.895 2.59 0.00 0.00 4.75
1743 2232 1.194218 TCGATGACATGGAAGCCAGA 58.806 50.000 0.00 0.00 36.75 3.86
1783 2278 0.320374 TTTCATCGACTCGTTGCCCT 59.680 50.000 4.86 0.00 0.00 5.19
1792 2287 2.184020 CTCGTTGCCCTCCATGGACA 62.184 60.000 11.44 4.68 38.35 4.02
1880 2375 1.684386 AAGCTGATCTGCGAGGGGAG 61.684 60.000 17.62 0.00 38.13 4.30
1903 2398 2.496899 GTGTGATCACATTCAGGGGT 57.503 50.000 30.10 0.00 43.97 4.95
1904 2399 2.086869 GTGTGATCACATTCAGGGGTG 58.913 52.381 30.10 0.00 43.97 4.61
1905 2400 1.004628 TGTGATCACATTCAGGGGTGG 59.995 52.381 24.56 0.00 36.21 4.61
1906 2401 1.281867 GTGATCACATTCAGGGGTGGA 59.718 52.381 21.07 0.00 35.74 4.02
1907 2402 1.561076 TGATCACATTCAGGGGTGGAG 59.439 52.381 0.00 0.00 35.74 3.86
1908 2403 1.561542 GATCACATTCAGGGGTGGAGT 59.438 52.381 0.00 0.00 35.74 3.85
1909 2404 0.984230 TCACATTCAGGGGTGGAGTC 59.016 55.000 0.00 0.00 35.74 3.36
1910 2405 0.692476 CACATTCAGGGGTGGAGTCA 59.308 55.000 0.00 0.00 0.00 3.41
1911 2406 0.987294 ACATTCAGGGGTGGAGTCAG 59.013 55.000 0.00 0.00 0.00 3.51
1912 2407 0.254178 CATTCAGGGGTGGAGTCAGG 59.746 60.000 0.00 0.00 0.00 3.86
1913 2408 0.119155 ATTCAGGGGTGGAGTCAGGA 59.881 55.000 0.00 0.00 0.00 3.86
1914 2409 0.119155 TTCAGGGGTGGAGTCAGGAT 59.881 55.000 0.00 0.00 0.00 3.24
1915 2410 0.119155 TCAGGGGTGGAGTCAGGATT 59.881 55.000 0.00 0.00 0.00 3.01
1916 2411 0.995024 CAGGGGTGGAGTCAGGATTT 59.005 55.000 0.00 0.00 0.00 2.17
1917 2412 0.995024 AGGGGTGGAGTCAGGATTTG 59.005 55.000 0.00 0.00 0.00 2.32
1918 2413 0.034089 GGGGTGGAGTCAGGATTTGG 60.034 60.000 0.00 0.00 0.00 3.28
1919 2414 0.034089 GGGTGGAGTCAGGATTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
1920 2415 0.698818 GGTGGAGTCAGGATTTGGGT 59.301 55.000 0.00 0.00 0.00 4.51
1921 2416 1.913419 GGTGGAGTCAGGATTTGGGTA 59.087 52.381 0.00 0.00 0.00 3.69
1922 2417 2.509964 GGTGGAGTCAGGATTTGGGTAT 59.490 50.000 0.00 0.00 0.00 2.73
1923 2418 3.545703 GTGGAGTCAGGATTTGGGTATG 58.454 50.000 0.00 0.00 0.00 2.39
1924 2419 2.509548 TGGAGTCAGGATTTGGGTATGG 59.490 50.000 0.00 0.00 0.00 2.74
1925 2420 2.777692 GGAGTCAGGATTTGGGTATGGA 59.222 50.000 0.00 0.00 0.00 3.41
1926 2421 3.181450 GGAGTCAGGATTTGGGTATGGAG 60.181 52.174 0.00 0.00 0.00 3.86
1927 2422 2.780010 AGTCAGGATTTGGGTATGGAGG 59.220 50.000 0.00 0.00 0.00 4.30
1928 2423 2.135189 TCAGGATTTGGGTATGGAGGG 58.865 52.381 0.00 0.00 0.00 4.30
1929 2424 1.145738 CAGGATTTGGGTATGGAGGGG 59.854 57.143 0.00 0.00 0.00 4.79
1930 2425 0.178961 GGATTTGGGTATGGAGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
1931 2426 0.178961 GATTTGGGTATGGAGGGGCC 60.179 60.000 0.00 0.00 37.10 5.80
1998 2499 8.928733 CGTATAGAACAAGGTTTTGCTTAAGTA 58.071 33.333 4.02 0.00 37.85 2.24
2186 2782 7.803724 AGTAGAAAAACATACTTGCGGTTAAG 58.196 34.615 0.00 0.00 0.00 1.85
2194 2790 1.692519 ACTTGCGGTTAAGTGGACTCT 59.307 47.619 0.00 0.00 39.33 3.24
2204 2800 6.128634 CGGTTAAGTGGACTCTGATTTGTAAC 60.129 42.308 0.00 0.00 0.00 2.50
2210 2806 4.202172 TGGACTCTGATTTGTAACGTGTGA 60.202 41.667 0.00 0.00 0.00 3.58
2235 2831 4.621068 TGACTTCTGTTTGTTCTGCAAG 57.379 40.909 0.00 0.00 38.47 4.01
2276 2872 3.589988 ACCTGATCAGAAGCGTTAACTG 58.410 45.455 24.62 5.05 0.00 3.16
2286 2882 1.549170 AGCGTTAACTGGACTCGGATT 59.451 47.619 3.71 0.00 0.00 3.01
2287 2883 1.659098 GCGTTAACTGGACTCGGATTG 59.341 52.381 3.71 0.00 0.00 2.67
2290 2886 2.921754 GTTAACTGGACTCGGATTGTCG 59.078 50.000 0.00 0.00 35.45 4.35
2304 2900 4.436852 CGGATTGTCGGATTTGTAACTTGG 60.437 45.833 0.00 0.00 0.00 3.61
2336 2932 6.037610 GCCTCACTAACAATTTCAGTAGGATG 59.962 42.308 0.00 0.00 0.00 3.51
2352 2948 4.363991 AGGATGAGAACTTGAAGCAACT 57.636 40.909 0.00 0.00 0.00 3.16
2389 2985 2.579410 ATCTTAACGGGTGTTTGGCT 57.421 45.000 0.00 0.00 39.54 4.75
2390 2986 2.351706 TCTTAACGGGTGTTTGGCTT 57.648 45.000 0.00 0.00 39.54 4.35
2404 3000 3.354089 TTGGCTTTGCTTTTCTCTTCG 57.646 42.857 0.00 0.00 0.00 3.79
2426 3022 2.361992 TGCTGCCTGCTGGATTGG 60.362 61.111 14.77 0.88 43.37 3.16
2433 3029 1.961435 GCCTGCTGGATTGGAATGGAA 60.961 52.381 14.77 0.00 34.57 3.53
2437 3033 4.442472 CCTGCTGGATTGGAATGGAAAATC 60.442 45.833 2.92 0.00 34.57 2.17
2446 3042 7.707893 GGATTGGAATGGAAAATCAACATACTG 59.292 37.037 0.00 0.00 32.96 2.74
2536 3387 0.824759 ATAGGAACTGGCCGAGACAC 59.175 55.000 8.91 0.00 41.52 3.67
2538 3389 1.194781 AGGAACTGGCCGAGACACAT 61.195 55.000 8.91 0.00 37.18 3.21
2603 3454 7.232534 GGGACATTTACAAAATAGGCATATCCA 59.767 37.037 0.00 0.00 37.29 3.41
2619 3470 5.106634 GCATATCCAGATCAGAAGCATCAAC 60.107 44.000 0.00 0.00 0.00 3.18
2675 3527 8.138712 TCACAAATTACAGAACCAAATTACCAC 58.861 33.333 0.00 0.00 0.00 4.16
2679 3534 9.892130 AAATTACAGAACCAAATTACCACAAAA 57.108 25.926 0.00 0.00 0.00 2.44
2727 3582 4.464947 TCGACACTGATACAGGATGAGAT 58.535 43.478 0.00 0.00 39.69 2.75
2752 3607 7.246171 TCTACAGAGATTAAACCTTTGCTCT 57.754 36.000 0.00 0.00 33.33 4.09
2771 3626 1.463444 CTTTCGTTGGTTAAGCGGGAG 59.537 52.381 0.00 0.00 0.00 4.30
2784 3639 3.695830 AGCGGGAGAAATTGACAAGTA 57.304 42.857 0.00 0.00 0.00 2.24
2805 3660 4.235079 ACAGCAGCCAAATACCTGAATA 57.765 40.909 0.00 0.00 0.00 1.75
2850 3705 3.499406 AGCATGGCTTGGTCCTGA 58.501 55.556 0.00 0.00 33.89 3.86
2893 3748 4.178861 GCGGTGTCAGCGACATTA 57.821 55.556 27.42 0.00 44.63 1.90
2928 3783 1.871676 GAGGGTGTCGAAAACTGGAAC 59.128 52.381 0.00 0.00 0.00 3.62
2940 3795 4.124351 TGGAACGGCGGCGACTAG 62.124 66.667 38.93 9.08 0.00 2.57
2950 3805 0.311165 CGGCGACTAGTCCCATGTAG 59.689 60.000 22.56 8.64 0.00 2.74
2951 3806 1.400737 GGCGACTAGTCCCATGTAGT 58.599 55.000 17.23 0.00 31.97 2.73
2952 3807 2.579873 GGCGACTAGTCCCATGTAGTA 58.420 52.381 17.23 0.00 29.34 1.82
2961 3816 7.829869 ACTAGTCCCATGTAGTATACCCTAAA 58.170 38.462 0.00 0.00 42.12 1.85
2962 3817 8.462676 ACTAGTCCCATGTAGTATACCCTAAAT 58.537 37.037 0.00 0.00 42.12 1.40
2968 3823 8.755977 CCCATGTAGTATACCCTAAATACGAAT 58.244 37.037 0.00 0.00 42.12 3.34
2988 3843 7.533426 ACGAATTACAGACTTACAGTTACGAT 58.467 34.615 0.00 0.00 0.00 3.73
2992 3847 3.187700 CAGACTTACAGTTACGATGGGC 58.812 50.000 0.00 0.00 0.00 5.36
2999 3854 1.153229 GTTACGATGGGCAGGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
3032 3887 2.526432 CCCATCGGCCACTACTATAGT 58.474 52.381 10.87 10.87 40.28 2.12
3033 3888 3.693807 CCCATCGGCCACTACTATAGTA 58.306 50.000 12.05 12.05 37.23 1.82
3073 3928 4.335400 TTTCACATGGGCCTTTTTCTTC 57.665 40.909 4.53 0.00 0.00 2.87
3075 3930 2.158325 TCACATGGGCCTTTTTCTTCCT 60.158 45.455 4.53 0.00 0.00 3.36
3079 3934 4.202357 ACATGGGCCTTTTTCTTCCTTTTC 60.202 41.667 4.53 0.00 0.00 2.29
3080 3935 3.653164 TGGGCCTTTTTCTTCCTTTTCT 58.347 40.909 4.53 0.00 0.00 2.52
3081 3936 3.641436 TGGGCCTTTTTCTTCCTTTTCTC 59.359 43.478 4.53 0.00 0.00 2.87
3082 3937 3.641436 GGGCCTTTTTCTTCCTTTTCTCA 59.359 43.478 0.84 0.00 0.00 3.27
3083 3938 4.501571 GGGCCTTTTTCTTCCTTTTCTCAC 60.502 45.833 0.84 0.00 0.00 3.51
3084 3939 4.099419 GGCCTTTTTCTTCCTTTTCTCACA 59.901 41.667 0.00 0.00 0.00 3.58
3224 4079 4.822685 ATCTGATGGATATGAGCACCTC 57.177 45.455 0.00 0.00 32.04 3.85
3226 4081 3.969312 TCTGATGGATATGAGCACCTCAA 59.031 43.478 0.00 0.00 44.04 3.02
3316 4178 4.848357 ACTCACAAGACCTGGATATTTGG 58.152 43.478 0.00 0.00 0.00 3.28
3324 4186 4.141181 AGACCTGGATATTTGGCATGCTAA 60.141 41.667 18.92 15.97 0.00 3.09
3364 4231 8.104566 AGTGATGATATCCTACTACTGGTAGTC 58.895 40.741 15.50 2.53 44.58 2.59
3365 4232 7.064847 GTGATGATATCCTACTACTGGTAGTCG 59.935 44.444 15.50 10.26 44.58 4.18
3382 4249 2.034812 AGTCGTCTGTGAAGGACTGTTC 59.965 50.000 0.00 0.00 41.48 3.18
3422 4289 0.522076 GCTTACGTTGCTGCATCTGC 60.522 55.000 1.84 0.00 42.50 4.26
3435 4302 4.552355 CTGCATCTGCTTGATTCAAACAA 58.448 39.130 4.22 0.00 42.66 2.83
3440 4307 6.183360 GCATCTGCTTGATTCAAACAATCTTG 60.183 38.462 4.22 1.93 38.21 3.02
3772 5326 3.142838 CCCGGCTCCAAGGCAATG 61.143 66.667 0.00 0.00 41.44 2.82
3773 5327 3.142838 CCGGCTCCAAGGCAATGG 61.143 66.667 3.13 3.13 41.44 3.16
3786 5340 1.743623 CAATGGCGGGCACGTAAGA 60.744 57.895 11.45 0.00 43.45 2.10
3789 5343 4.424566 GGCGGGCACGTAAGACGA 62.425 66.667 11.45 0.00 46.05 4.20
3790 5344 3.177249 GCGGGCACGTAAGACGAC 61.177 66.667 11.45 0.00 46.05 4.34
3791 5345 2.256158 CGGGCACGTAAGACGACA 59.744 61.111 0.00 0.00 46.05 4.35
3796 5350 0.640768 GCACGTAAGACGACATCTGC 59.359 55.000 5.94 1.04 46.05 4.26
3823 5377 4.864334 GGGATGCCGCCACTCCTG 62.864 72.222 0.00 0.00 0.00 3.86
3895 5452 1.521681 GCCATGCCTACGAGGTCAC 60.522 63.158 0.00 0.00 37.80 3.67
3900 5457 1.248785 TGCCTACGAGGTCACTGTCC 61.249 60.000 0.00 0.00 37.80 4.02
3902 5459 1.654954 CCTACGAGGTCACTGTCCGG 61.655 65.000 0.00 0.00 0.00 5.14
3904 5461 1.239296 TACGAGGTCACTGTCCGGTG 61.239 60.000 0.00 0.00 38.44 4.94
3908 5465 1.227853 GGTCACTGTCCGGTGCTTT 60.228 57.895 0.00 0.00 37.16 3.51
4048 5614 2.665649 TGTATGCTCGATCCGTTTGT 57.334 45.000 0.00 0.00 0.00 2.83
4049 5615 2.967362 TGTATGCTCGATCCGTTTGTT 58.033 42.857 0.00 0.00 0.00 2.83
4050 5616 3.331150 TGTATGCTCGATCCGTTTGTTT 58.669 40.909 0.00 0.00 0.00 2.83
4051 5617 3.749088 TGTATGCTCGATCCGTTTGTTTT 59.251 39.130 0.00 0.00 0.00 2.43
4052 5618 2.961522 TGCTCGATCCGTTTGTTTTC 57.038 45.000 0.00 0.00 0.00 2.29
4053 5619 2.214347 TGCTCGATCCGTTTGTTTTCA 58.786 42.857 0.00 0.00 0.00 2.69
4054 5620 2.032377 TGCTCGATCCGTTTGTTTTCAC 60.032 45.455 0.00 0.00 0.00 3.18
4055 5621 2.223377 GCTCGATCCGTTTGTTTTCACT 59.777 45.455 0.00 0.00 0.00 3.41
4056 5622 3.303791 GCTCGATCCGTTTGTTTTCACTT 60.304 43.478 0.00 0.00 0.00 3.16
4057 5623 4.788521 GCTCGATCCGTTTGTTTTCACTTT 60.789 41.667 0.00 0.00 0.00 2.66
4058 5624 4.839796 TCGATCCGTTTGTTTTCACTTTC 58.160 39.130 0.00 0.00 0.00 2.62
4059 5625 4.333095 TCGATCCGTTTGTTTTCACTTTCA 59.667 37.500 0.00 0.00 0.00 2.69
4060 5626 4.670621 CGATCCGTTTGTTTTCACTTTCAG 59.329 41.667 0.00 0.00 0.00 3.02
4061 5627 5.576447 ATCCGTTTGTTTTCACTTTCAGT 57.424 34.783 0.00 0.00 0.00 3.41
4062 5628 5.379732 TCCGTTTGTTTTCACTTTCAGTT 57.620 34.783 0.00 0.00 0.00 3.16
4063 5629 5.774630 TCCGTTTGTTTTCACTTTCAGTTT 58.225 33.333 0.00 0.00 0.00 2.66
4064 5630 5.859648 TCCGTTTGTTTTCACTTTCAGTTTC 59.140 36.000 0.00 0.00 0.00 2.78
4065 5631 5.631512 CCGTTTGTTTTCACTTTCAGTTTCA 59.368 36.000 0.00 0.00 0.00 2.69
4066 5632 6.399564 CCGTTTGTTTTCACTTTCAGTTTCAC 60.400 38.462 0.00 0.00 0.00 3.18
4067 5633 6.143118 CGTTTGTTTTCACTTTCAGTTTCACA 59.857 34.615 0.00 0.00 0.00 3.58
4068 5634 7.306283 CGTTTGTTTTCACTTTCAGTTTCACAA 60.306 33.333 0.00 0.00 0.00 3.33
4069 5635 8.331742 GTTTGTTTTCACTTTCAGTTTCACAAA 58.668 29.630 0.00 0.00 0.00 2.83
4070 5636 8.425577 TTGTTTTCACTTTCAGTTTCACAAAA 57.574 26.923 0.00 0.00 0.00 2.44
4071 5637 8.600449 TGTTTTCACTTTCAGTTTCACAAAAT 57.400 26.923 0.00 0.00 0.00 1.82
4072 5638 9.698309 TGTTTTCACTTTCAGTTTCACAAAATA 57.302 25.926 0.00 0.00 0.00 1.40
4081 5647 8.810652 TTCAGTTTCACAAAATATTTAGCACC 57.189 30.769 0.01 0.00 0.00 5.01
4082 5648 7.946207 TCAGTTTCACAAAATATTTAGCACCA 58.054 30.769 0.01 0.00 0.00 4.17
4083 5649 8.081633 TCAGTTTCACAAAATATTTAGCACCAG 58.918 33.333 0.01 0.00 0.00 4.00
4084 5650 7.867403 CAGTTTCACAAAATATTTAGCACCAGT 59.133 33.333 0.01 0.00 0.00 4.00
4085 5651 8.082242 AGTTTCACAAAATATTTAGCACCAGTC 58.918 33.333 0.01 0.00 0.00 3.51
4086 5652 6.176975 TCACAAAATATTTAGCACCAGTCG 57.823 37.500 0.01 0.00 0.00 4.18
4087 5653 5.935206 TCACAAAATATTTAGCACCAGTCGA 59.065 36.000 0.01 0.00 0.00 4.20
4088 5654 6.428465 TCACAAAATATTTAGCACCAGTCGAA 59.572 34.615 0.01 0.00 0.00 3.71
4089 5655 7.041030 TCACAAAATATTTAGCACCAGTCGAAA 60.041 33.333 0.01 0.00 0.00 3.46
4090 5656 7.593273 CACAAAATATTTAGCACCAGTCGAAAA 59.407 33.333 0.01 0.00 0.00 2.29
4091 5657 7.593644 ACAAAATATTTAGCACCAGTCGAAAAC 59.406 33.333 0.01 0.00 0.00 2.43
4092 5658 6.811253 AATATTTAGCACCAGTCGAAAACA 57.189 33.333 0.00 0.00 0.00 2.83
4093 5659 3.955771 TTTAGCACCAGTCGAAAACAC 57.044 42.857 0.00 0.00 0.00 3.32
4094 5660 1.873698 TAGCACCAGTCGAAAACACC 58.126 50.000 0.00 0.00 0.00 4.16
4095 5661 1.157870 AGCACCAGTCGAAAACACCG 61.158 55.000 0.00 0.00 0.00 4.94
4096 5662 1.155424 GCACCAGTCGAAAACACCGA 61.155 55.000 0.00 0.00 0.00 4.69
4097 5663 1.292061 CACCAGTCGAAAACACCGAA 58.708 50.000 0.00 0.00 37.81 4.30
4098 5664 1.666700 CACCAGTCGAAAACACCGAAA 59.333 47.619 0.00 0.00 37.81 3.46
4099 5665 2.289547 CACCAGTCGAAAACACCGAAAT 59.710 45.455 0.00 0.00 37.81 2.17
4100 5666 2.946990 ACCAGTCGAAAACACCGAAATT 59.053 40.909 0.00 0.00 37.81 1.82
4101 5667 3.002965 ACCAGTCGAAAACACCGAAATTC 59.997 43.478 0.00 0.00 37.81 2.17
4102 5668 3.002862 CCAGTCGAAAACACCGAAATTCA 59.997 43.478 0.00 0.00 37.81 2.57
4103 5669 4.211389 CAGTCGAAAACACCGAAATTCAG 58.789 43.478 0.00 0.00 37.81 3.02
4104 5670 3.875134 AGTCGAAAACACCGAAATTCAGT 59.125 39.130 0.00 0.00 37.81 3.41
4105 5671 3.966218 GTCGAAAACACCGAAATTCAGTG 59.034 43.478 7.72 7.72 37.81 3.66
4106 5672 3.872182 TCGAAAACACCGAAATTCAGTGA 59.128 39.130 15.43 0.00 35.47 3.41
4107 5673 4.333095 TCGAAAACACCGAAATTCAGTGAA 59.667 37.500 15.43 8.27 35.47 3.18
4108 5674 5.008217 TCGAAAACACCGAAATTCAGTGAAT 59.992 36.000 15.43 12.75 35.47 2.57
4109 5675 5.685511 CGAAAACACCGAAATTCAGTGAATT 59.314 36.000 22.70 22.70 43.07 2.17
4127 5693 9.801714 CAGTGAATTTCAGTTATTTTGATTTGC 57.198 29.630 3.94 0.00 0.00 3.68
4128 5694 9.545105 AGTGAATTTCAGTTATTTTGATTTGCA 57.455 25.926 0.00 0.00 0.00 4.08
4136 5702 8.772705 TCAGTTATTTTGATTTGCATTTTGACC 58.227 29.630 0.00 0.00 0.00 4.02
4137 5703 8.557864 CAGTTATTTTGATTTGCATTTTGACCA 58.442 29.630 0.00 0.00 0.00 4.02
4138 5704 9.118300 AGTTATTTTGATTTGCATTTTGACCAA 57.882 25.926 0.00 0.00 0.00 3.67
4139 5705 9.727627 GTTATTTTGATTTGCATTTTGACCAAA 57.272 25.926 0.00 0.00 33.54 3.28
4140 5706 9.947669 TTATTTTGATTTGCATTTTGACCAAAG 57.052 25.926 0.00 0.00 32.65 2.77
4141 5707 6.998968 TTTGATTTGCATTTTGACCAAAGT 57.001 29.167 0.00 0.00 32.65 2.66
4142 5708 6.601741 TTGATTTGCATTTTGACCAAAGTC 57.398 33.333 0.00 0.00 43.83 3.01
4143 5709 4.744137 TGATTTGCATTTTGACCAAAGTCG 59.256 37.500 0.00 0.00 46.74 4.18
4144 5710 4.377839 TTTGCATTTTGACCAAAGTCGA 57.622 36.364 0.00 0.00 46.74 4.20
4145 5711 4.377839 TTGCATTTTGACCAAAGTCGAA 57.622 36.364 0.00 0.00 46.74 3.71
4154 5720 7.504924 TTTGACCAAAGTCGAAATATTCACT 57.495 32.000 0.00 0.00 46.74 3.41
4155 5721 7.504924 TTGACCAAAGTCGAAATATTCACTT 57.495 32.000 0.00 0.00 46.74 3.16
4156 5722 6.898041 TGACCAAAGTCGAAATATTCACTTG 58.102 36.000 7.72 1.78 46.74 3.16
4157 5723 6.708502 TGACCAAAGTCGAAATATTCACTTGA 59.291 34.615 7.72 0.00 46.74 3.02
4158 5724 7.227711 TGACCAAAGTCGAAATATTCACTTGAA 59.772 33.333 7.72 0.00 46.74 2.69
4159 5725 7.584987 ACCAAAGTCGAAATATTCACTTGAAG 58.415 34.615 7.72 0.00 37.48 3.02
4160 5726 7.228706 ACCAAAGTCGAAATATTCACTTGAAGT 59.771 33.333 0.00 0.00 37.48 3.01
4161 5727 7.746475 CCAAAGTCGAAATATTCACTTGAAGTC 59.254 37.037 0.00 0.00 37.48 3.01
4162 5728 7.962964 AAGTCGAAATATTCACTTGAAGTCA 57.037 32.000 0.00 0.00 37.48 3.41
4163 5729 7.962964 AGTCGAAATATTCACTTGAAGTCAA 57.037 32.000 0.00 0.00 37.48 3.18
4164 5730 8.553459 AGTCGAAATATTCACTTGAAGTCAAT 57.447 30.769 0.00 0.00 37.48 2.57
4165 5731 9.003658 AGTCGAAATATTCACTTGAAGTCAATT 57.996 29.630 0.00 0.00 37.48 2.32
4166 5732 9.612620 GTCGAAATATTCACTTGAAGTCAATTT 57.387 29.630 0.00 2.23 37.48 1.82
4228 5794 9.460019 TTTGAATTCATATGTACCACTGAATGA 57.540 29.630 9.40 1.57 38.12 2.57
4229 5795 9.460019 TTGAATTCATATGTACCACTGAATGAA 57.540 29.630 9.40 8.45 38.12 2.57
4230 5796 9.460019 TGAATTCATATGTACCACTGAATGAAA 57.540 29.630 3.38 2.83 38.12 2.69
4234 5800 7.706159 TCATATGTACCACTGAATGAAATTGC 58.294 34.615 1.90 0.00 36.07 3.56
4235 5801 4.782019 TGTACCACTGAATGAAATTGCC 57.218 40.909 0.00 0.00 36.07 4.52
4236 5802 3.509575 TGTACCACTGAATGAAATTGCCC 59.490 43.478 0.00 0.00 36.07 5.36
4237 5803 2.607499 ACCACTGAATGAAATTGCCCA 58.393 42.857 0.00 0.00 36.07 5.36
4238 5804 2.971330 ACCACTGAATGAAATTGCCCAA 59.029 40.909 0.00 0.00 36.07 4.12
4239 5805 3.390639 ACCACTGAATGAAATTGCCCAAA 59.609 39.130 0.00 0.00 36.07 3.28
4240 5806 4.041938 ACCACTGAATGAAATTGCCCAAAT 59.958 37.500 0.00 0.00 36.07 2.32
4241 5807 5.248020 ACCACTGAATGAAATTGCCCAAATA 59.752 36.000 0.00 0.00 36.07 1.40
4242 5808 6.070078 ACCACTGAATGAAATTGCCCAAATAT 60.070 34.615 0.00 0.00 36.07 1.28
4243 5809 6.824704 CCACTGAATGAAATTGCCCAAATATT 59.175 34.615 0.00 0.00 36.07 1.28
4244 5810 7.337436 CCACTGAATGAAATTGCCCAAATATTT 59.663 33.333 0.00 0.00 36.07 1.40
4245 5811 8.732531 CACTGAATGAAATTGCCCAAATATTTT 58.267 29.630 0.00 0.00 36.07 1.82
4246 5812 9.956640 ACTGAATGAAATTGCCCAAATATTTTA 57.043 25.926 0.00 0.00 36.07 1.52
4248 5814 8.891720 TGAATGAAATTGCCCAAATATTTTAGC 58.108 29.630 10.85 10.85 36.07 3.09
4249 5815 9.112725 GAATGAAATTGCCCAAATATTTTAGCT 57.887 29.630 16.31 0.00 36.07 3.32
4250 5816 7.846644 TGAAATTGCCCAAATATTTTAGCTG 57.153 32.000 16.31 0.17 0.00 4.24
4251 5817 7.619050 TGAAATTGCCCAAATATTTTAGCTGA 58.381 30.769 16.31 8.55 0.00 4.26
4252 5818 8.099537 TGAAATTGCCCAAATATTTTAGCTGAA 58.900 29.630 16.31 0.00 0.00 3.02
4253 5819 8.860780 AAATTGCCCAAATATTTTAGCTGAAA 57.139 26.923 16.31 6.09 0.00 2.69
4254 5820 9.465199 AAATTGCCCAAATATTTTAGCTGAAAT 57.535 25.926 19.09 19.09 33.95 2.17
4255 5821 7.846644 TTGCCCAAATATTTTAGCTGAAATG 57.153 32.000 22.83 10.22 31.96 2.32
4256 5822 5.816777 TGCCCAAATATTTTAGCTGAAATGC 59.183 36.000 22.83 17.04 31.96 3.56
4257 5823 5.816777 GCCCAAATATTTTAGCTGAAATGCA 59.183 36.000 22.83 7.64 34.99 3.96
4258 5824 6.315891 GCCCAAATATTTTAGCTGAAATGCAA 59.684 34.615 22.83 6.98 34.99 4.08
4259 5825 7.148272 GCCCAAATATTTTAGCTGAAATGCAAA 60.148 33.333 22.83 6.66 34.99 3.68
4260 5826 8.895737 CCCAAATATTTTAGCTGAAATGCAAAT 58.104 29.630 22.83 8.51 34.99 2.32
4272 5838 9.880157 AGCTGAAATGCAAATATTTTAGTGATT 57.120 25.926 0.00 0.00 36.54 2.57
4273 5839 9.910511 GCTGAAATGCAAATATTTTAGTGATTG 57.089 29.630 0.00 0.00 36.54 2.67
4274 5840 9.910511 CTGAAATGCAAATATTTTAGTGATTGC 57.089 29.630 0.00 0.00 42.49 3.56
4275 5841 9.656040 TGAAATGCAAATATTTTAGTGATTGCT 57.344 25.926 9.36 0.00 42.59 3.91
4276 5842 9.910511 GAAATGCAAATATTTTAGTGATTGCTG 57.089 29.630 9.36 0.00 42.59 4.41
4277 5843 9.656040 AAATGCAAATATTTTAGTGATTGCTGA 57.344 25.926 9.36 0.00 42.59 4.26
4278 5844 9.656040 AATGCAAATATTTTAGTGATTGCTGAA 57.344 25.926 9.36 0.00 42.59 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.784037 TGCCATGATATGTTTCAGCTATTTTT 58.216 30.769 0.00 0.00 0.00 1.94
27 28 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
28 29 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
29 30 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
30 31 7.699391 CACTAAAGTTGCCATGATATGTTTCAG 59.301 37.037 0.00 0.00 0.00 3.02
31 32 7.176515 ACACTAAAGTTGCCATGATATGTTTCA 59.823 33.333 0.00 0.00 0.00 2.69
32 33 7.538575 ACACTAAAGTTGCCATGATATGTTTC 58.461 34.615 0.00 0.00 0.00 2.78
33 34 7.466746 ACACTAAAGTTGCCATGATATGTTT 57.533 32.000 0.00 0.00 0.00 2.83
34 35 8.574251 TTACACTAAAGTTGCCATGATATGTT 57.426 30.769 0.00 0.00 0.00 2.71
37 38 8.574251 TGTTTACACTAAAGTTGCCATGATAT 57.426 30.769 0.00 0.00 0.00 1.63
38 39 7.987750 TGTTTACACTAAAGTTGCCATGATA 57.012 32.000 0.00 0.00 0.00 2.15
40 41 6.488344 TGATGTTTACACTAAAGTTGCCATGA 59.512 34.615 0.00 0.00 0.00 3.07
43 44 6.488344 TCATGATGTTTACACTAAAGTTGCCA 59.512 34.615 0.00 0.00 0.00 4.92
44 45 6.801862 GTCATGATGTTTACACTAAAGTTGCC 59.198 38.462 0.00 0.00 0.00 4.52
45 46 7.359595 TGTCATGATGTTTACACTAAAGTTGC 58.640 34.615 0.00 0.00 0.00 4.17
46 47 9.897744 ATTGTCATGATGTTTACACTAAAGTTG 57.102 29.630 0.00 0.00 0.00 3.16
65 66 6.762702 TGTCTATTGCACATGAATTGTCAT 57.237 33.333 0.00 0.00 45.80 3.06
75 76 6.579666 AAAGTTGTCATGTCTATTGCACAT 57.420 33.333 0.00 0.00 34.67 3.21
78 79 7.041712 TCGTTAAAAGTTGTCATGTCTATTGCA 60.042 33.333 0.00 0.00 0.00 4.08
79 80 7.268447 GTCGTTAAAAGTTGTCATGTCTATTGC 59.732 37.037 0.00 0.00 0.00 3.56
80 81 8.279800 TGTCGTTAAAAGTTGTCATGTCTATTG 58.720 33.333 0.00 0.00 0.00 1.90
81 82 8.373048 TGTCGTTAAAAGTTGTCATGTCTATT 57.627 30.769 0.00 0.00 0.00 1.73
82 83 7.956420 TGTCGTTAAAAGTTGTCATGTCTAT 57.044 32.000 0.00 0.00 0.00 1.98
83 84 7.773864 TTGTCGTTAAAAGTTGTCATGTCTA 57.226 32.000 0.00 0.00 0.00 2.59
84 85 6.671614 TTGTCGTTAAAAGTTGTCATGTCT 57.328 33.333 0.00 0.00 0.00 3.41
85 86 7.728580 TTTTGTCGTTAAAAGTTGTCATGTC 57.271 32.000 0.00 0.00 0.00 3.06
124 125 9.269453 TCTTCGAAACTAGATCTCGTATCAATA 57.731 33.333 0.00 0.00 34.27 1.90
125 126 8.155821 TCTTCGAAACTAGATCTCGTATCAAT 57.844 34.615 0.00 0.00 34.27 2.57
126 127 7.549615 TCTTCGAAACTAGATCTCGTATCAA 57.450 36.000 0.00 0.00 34.27 2.57
153 154 1.537348 CCATTAAATCCCTCGCGTCGA 60.537 52.381 5.77 0.00 0.00 4.20
154 155 0.859232 CCATTAAATCCCTCGCGTCG 59.141 55.000 5.77 0.00 0.00 5.12
155 156 1.597663 CACCATTAAATCCCTCGCGTC 59.402 52.381 5.77 0.00 0.00 5.19
156 157 1.208535 TCACCATTAAATCCCTCGCGT 59.791 47.619 5.77 0.00 0.00 6.01
157 158 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
158 159 3.489229 GCTTTCACCATTAAATCCCTCGC 60.489 47.826 0.00 0.00 0.00 5.03
159 160 3.242739 CGCTTTCACCATTAAATCCCTCG 60.243 47.826 0.00 0.00 0.00 4.63
160 161 3.066760 CCGCTTTCACCATTAAATCCCTC 59.933 47.826 0.00 0.00 0.00 4.30
161 162 3.023832 CCGCTTTCACCATTAAATCCCT 58.976 45.455 0.00 0.00 0.00 4.20
162 163 3.020984 TCCGCTTTCACCATTAAATCCC 58.979 45.455 0.00 0.00 0.00 3.85
164 165 5.757850 AGATCCGCTTTCACCATTAAATC 57.242 39.130 0.00 0.00 0.00 2.17
166 167 5.007034 TGAAGATCCGCTTTCACCATTAAA 58.993 37.500 0.00 0.00 36.83 1.52
167 168 4.584874 TGAAGATCCGCTTTCACCATTAA 58.415 39.130 0.00 0.00 36.83 1.40
169 170 3.071874 TGAAGATCCGCTTTCACCATT 57.928 42.857 0.00 0.00 36.83 3.16
170 171 2.787473 TGAAGATCCGCTTTCACCAT 57.213 45.000 0.00 0.00 36.83 3.55
171 172 2.559698 TTGAAGATCCGCTTTCACCA 57.440 45.000 0.00 0.00 36.83 4.17
172 173 2.030946 CGATTGAAGATCCGCTTTCACC 59.969 50.000 0.00 0.00 36.83 4.02
173 174 2.030946 CCGATTGAAGATCCGCTTTCAC 59.969 50.000 0.00 0.00 36.83 3.18
174 175 2.093711 TCCGATTGAAGATCCGCTTTCA 60.094 45.455 0.00 0.00 36.83 2.69
175 176 2.550978 TCCGATTGAAGATCCGCTTTC 58.449 47.619 0.00 0.00 36.83 2.62
177 178 2.918712 ATCCGATTGAAGATCCGCTT 57.081 45.000 0.00 0.00 40.25 4.68
178 179 2.918712 AATCCGATTGAAGATCCGCT 57.081 45.000 0.00 0.00 0.00 5.52
180 181 5.484173 TGAAAAATCCGATTGAAGATCCG 57.516 39.130 0.00 0.00 0.00 4.18
181 182 9.801873 TTAAATGAAAAATCCGATTGAAGATCC 57.198 29.630 0.00 0.00 0.00 3.36
252 253 2.011947 CACGTCACCTCATGAATGCAT 58.988 47.619 0.00 0.00 39.72 3.96
253 254 1.441738 CACGTCACCTCATGAATGCA 58.558 50.000 0.00 0.00 39.72 3.96
254 255 0.729116 CCACGTCACCTCATGAATGC 59.271 55.000 0.00 0.00 39.72 3.56
255 256 0.729116 GCCACGTCACCTCATGAATG 59.271 55.000 0.00 0.00 39.72 2.67
256 257 0.740868 CGCCACGTCACCTCATGAAT 60.741 55.000 0.00 0.00 39.72 2.57
257 258 1.374125 CGCCACGTCACCTCATGAA 60.374 57.895 0.00 0.00 39.72 2.57
258 259 2.261361 CGCCACGTCACCTCATGA 59.739 61.111 0.00 0.00 33.79 3.07
259 260 3.490759 GCGCCACGTCACCTCATG 61.491 66.667 0.00 0.00 0.00 3.07
262 263 4.664677 ACTGCGCCACGTCACCTC 62.665 66.667 4.18 0.00 0.00 3.85
263 264 4.664677 GACTGCGCCACGTCACCT 62.665 66.667 4.18 0.00 0.00 4.00
264 265 4.664677 AGACTGCGCCACGTCACC 62.665 66.667 19.29 0.00 32.68 4.02
265 266 3.406361 CAGACTGCGCCACGTCAC 61.406 66.667 19.29 0.36 32.68 3.67
275 276 1.876156 GCCCTATAACATGCAGACTGC 59.124 52.381 20.86 20.86 45.29 4.40
276 277 2.138320 CGCCCTATAACATGCAGACTG 58.862 52.381 0.00 0.00 0.00 3.51
278 279 1.867233 CACGCCCTATAACATGCAGAC 59.133 52.381 0.00 0.00 0.00 3.51
279 280 1.484653 ACACGCCCTATAACATGCAGA 59.515 47.619 0.00 0.00 0.00 4.26
281 282 1.662517 CACACGCCCTATAACATGCA 58.337 50.000 0.00 0.00 0.00 3.96
282 283 0.944386 CCACACGCCCTATAACATGC 59.056 55.000 0.00 0.00 0.00 4.06
283 284 0.944386 GCCACACGCCCTATAACATG 59.056 55.000 0.00 0.00 0.00 3.21
284 285 3.396951 GCCACACGCCCTATAACAT 57.603 52.632 0.00 0.00 0.00 2.71
294 295 3.977244 CCAAACCTGGCCACACGC 61.977 66.667 0.00 0.00 35.39 5.34
302 303 2.283173 GGTGGGAGCCAAACCTGG 60.283 66.667 0.00 0.00 46.65 4.45
303 304 1.903404 GTGGTGGGAGCCAAACCTG 60.903 63.158 10.75 0.00 40.68 4.00
306 307 0.827507 ACATGTGGTGGGAGCCAAAC 60.828 55.000 0.00 0.00 40.68 2.93
307 308 0.827089 CACATGTGGTGGGAGCCAAA 60.827 55.000 18.51 0.00 44.04 3.28
308 309 1.228521 CACATGTGGTGGGAGCCAA 60.229 57.895 18.51 0.00 44.04 4.52
309 310 2.435663 CACATGTGGTGGGAGCCA 59.564 61.111 18.51 0.00 44.04 4.75
320 321 0.322456 ATGCTAACGCCCACACATGT 60.322 50.000 0.00 0.00 34.43 3.21
321 322 0.810648 AATGCTAACGCCCACACATG 59.189 50.000 0.00 0.00 34.43 3.21
322 323 0.810648 CAATGCTAACGCCCACACAT 59.189 50.000 0.00 0.00 34.43 3.21
323 324 0.536233 ACAATGCTAACGCCCACACA 60.536 50.000 0.00 0.00 34.43 3.72
326 327 0.676782 AGGACAATGCTAACGCCCAC 60.677 55.000 0.00 0.00 34.43 4.61
327 328 0.906066 TAGGACAATGCTAACGCCCA 59.094 50.000 0.00 0.00 34.43 5.36
328 329 1.873591 CATAGGACAATGCTAACGCCC 59.126 52.381 0.00 0.00 34.43 6.13
329 330 2.833794 TCATAGGACAATGCTAACGCC 58.166 47.619 0.00 0.00 34.43 5.68
330 331 5.696724 ACTAATCATAGGACAATGCTAACGC 59.303 40.000 0.00 0.00 33.15 4.84
331 332 7.062371 GCTACTAATCATAGGACAATGCTAACG 59.938 40.741 0.00 0.00 33.15 3.18
332 333 8.091449 AGCTACTAATCATAGGACAATGCTAAC 58.909 37.037 0.00 0.00 33.15 2.34
333 334 8.090831 CAGCTACTAATCATAGGACAATGCTAA 58.909 37.037 0.00 0.00 33.15 3.09
334 335 7.606349 CAGCTACTAATCATAGGACAATGCTA 58.394 38.462 0.00 0.00 33.15 3.49
335 336 6.462500 CAGCTACTAATCATAGGACAATGCT 58.538 40.000 0.00 0.00 33.15 3.79
337 338 6.462500 AGCAGCTACTAATCATAGGACAATG 58.538 40.000 0.00 0.00 33.15 2.82
339 340 7.597288 TTAGCAGCTACTAATCATAGGACAA 57.403 36.000 0.00 0.00 33.15 3.18
340 341 7.782897 ATTAGCAGCTACTAATCATAGGACA 57.217 36.000 12.66 0.00 38.21 4.02
346 347 8.153550 AGCAGTTAATTAGCAGCTACTAATCAT 58.846 33.333 17.68 7.67 41.03 2.45
348 349 7.954788 AGCAGTTAATTAGCAGCTACTAATC 57.045 36.000 17.68 7.51 41.03 1.75
350 351 9.261180 CATTAGCAGTTAATTAGCAGCTACTAA 57.739 33.333 20.78 8.86 32.91 2.24
351 352 7.872993 CCATTAGCAGTTAATTAGCAGCTACTA 59.127 37.037 20.78 11.45 32.91 1.82
352 353 6.708054 CCATTAGCAGTTAATTAGCAGCTACT 59.292 38.462 20.78 15.09 32.91 2.57
354 355 6.826668 TCCATTAGCAGTTAATTAGCAGCTA 58.173 36.000 18.26 18.26 32.18 3.32
355 356 5.684704 TCCATTAGCAGTTAATTAGCAGCT 58.315 37.500 20.00 20.00 34.10 4.24
356 357 6.566197 ATCCATTAGCAGTTAATTAGCAGC 57.434 37.500 8.38 8.38 29.37 5.25
357 358 8.715998 CACTATCCATTAGCAGTTAATTAGCAG 58.284 37.037 1.97 0.00 29.37 4.24
359 360 7.878127 TCCACTATCCATTAGCAGTTAATTAGC 59.122 37.037 0.00 0.00 29.37 3.09
360 361 9.209175 GTCCACTATCCATTAGCAGTTAATTAG 57.791 37.037 0.00 0.00 29.37 1.73
362 363 7.499232 GTGTCCACTATCCATTAGCAGTTAATT 59.501 37.037 0.00 0.00 29.37 1.40
363 364 6.992715 GTGTCCACTATCCATTAGCAGTTAAT 59.007 38.462 0.00 0.00 32.08 1.40
364 365 6.346096 GTGTCCACTATCCATTAGCAGTTAA 58.654 40.000 0.00 0.00 0.00 2.01
365 366 5.451381 CGTGTCCACTATCCATTAGCAGTTA 60.451 44.000 0.00 0.00 0.00 2.24
367 368 3.181475 CGTGTCCACTATCCATTAGCAGT 60.181 47.826 0.00 0.00 0.00 4.40
368 369 3.181475 ACGTGTCCACTATCCATTAGCAG 60.181 47.826 0.00 0.00 0.00 4.24
369 370 2.764010 ACGTGTCCACTATCCATTAGCA 59.236 45.455 0.00 0.00 0.00 3.49
371 372 5.298527 TCTGTACGTGTCCACTATCCATTAG 59.701 44.000 0.00 0.00 0.00 1.73
372 373 5.195185 TCTGTACGTGTCCACTATCCATTA 58.805 41.667 0.00 0.00 0.00 1.90
373 374 4.021229 TCTGTACGTGTCCACTATCCATT 58.979 43.478 0.00 0.00 0.00 3.16
376 377 4.445452 TTTCTGTACGTGTCCACTATCC 57.555 45.455 0.00 0.00 0.00 2.59
401 402 9.793252 TGCATTAGCTTCATCTTATTTTCTTTC 57.207 29.630 0.00 0.00 42.74 2.62
426 427 3.758755 TCTCCCTAGCTTGCATGTATG 57.241 47.619 0.00 0.00 0.00 2.39
427 428 4.778213 TTTCTCCCTAGCTTGCATGTAT 57.222 40.909 0.00 0.00 0.00 2.29
429 430 3.659183 ATTTCTCCCTAGCTTGCATGT 57.341 42.857 0.00 0.00 0.00 3.21
431 432 3.698040 CACAATTTCTCCCTAGCTTGCAT 59.302 43.478 0.00 0.00 0.00 3.96
432 433 3.084039 CACAATTTCTCCCTAGCTTGCA 58.916 45.455 0.00 0.00 0.00 4.08
434 435 2.096496 CGCACAATTTCTCCCTAGCTTG 59.904 50.000 0.00 0.00 0.00 4.01
435 436 2.359900 CGCACAATTTCTCCCTAGCTT 58.640 47.619 0.00 0.00 0.00 3.74
436 437 1.407437 CCGCACAATTTCTCCCTAGCT 60.407 52.381 0.00 0.00 0.00 3.32
439 440 2.771943 AGATCCGCACAATTTCTCCCTA 59.228 45.455 0.00 0.00 0.00 3.53
440 441 1.561542 AGATCCGCACAATTTCTCCCT 59.438 47.619 0.00 0.00 0.00 4.20
441 442 1.672881 CAGATCCGCACAATTTCTCCC 59.327 52.381 0.00 0.00 0.00 4.30
444 445 2.095059 GCAACAGATCCGCACAATTTCT 60.095 45.455 0.00 0.00 0.00 2.52
446 447 1.888512 AGCAACAGATCCGCACAATTT 59.111 42.857 0.00 0.00 0.00 1.82
447 448 1.538047 AGCAACAGATCCGCACAATT 58.462 45.000 0.00 0.00 0.00 2.32
448 449 1.538047 AAGCAACAGATCCGCACAAT 58.462 45.000 0.00 0.00 0.00 2.71
449 450 2.177394 TAAGCAACAGATCCGCACAA 57.823 45.000 0.00 0.00 0.00 3.33
450 451 1.804151 GTTAAGCAACAGATCCGCACA 59.196 47.619 0.00 0.00 34.60 4.57
451 452 2.076863 AGTTAAGCAACAGATCCGCAC 58.923 47.619 0.00 0.00 37.10 5.34
453 454 2.742053 TGAAGTTAAGCAACAGATCCGC 59.258 45.455 0.00 0.00 37.10 5.54
456 457 6.955963 CACGTATTGAAGTTAAGCAACAGATC 59.044 38.462 0.00 0.00 37.10 2.75
457 458 6.426937 ACACGTATTGAAGTTAAGCAACAGAT 59.573 34.615 0.00 0.00 37.10 2.90
458 459 5.756347 ACACGTATTGAAGTTAAGCAACAGA 59.244 36.000 0.00 0.00 37.10 3.41
459 460 5.845953 CACACGTATTGAAGTTAAGCAACAG 59.154 40.000 0.00 0.00 37.10 3.16
460 461 5.277586 CCACACGTATTGAAGTTAAGCAACA 60.278 40.000 0.00 0.00 37.10 3.33
461 462 5.049954 TCCACACGTATTGAAGTTAAGCAAC 60.050 40.000 0.00 0.00 34.67 4.17
464 465 5.600908 TTCCACACGTATTGAAGTTAAGC 57.399 39.130 0.00 0.00 0.00 3.09
465 466 5.408604 AGCTTCCACACGTATTGAAGTTAAG 59.591 40.000 9.16 0.79 37.21 1.85
466 467 5.302360 AGCTTCCACACGTATTGAAGTTAA 58.698 37.500 9.16 0.00 37.21 2.01
467 468 4.890088 AGCTTCCACACGTATTGAAGTTA 58.110 39.130 9.16 0.00 37.21 2.24
468 469 3.740115 AGCTTCCACACGTATTGAAGTT 58.260 40.909 9.16 0.66 37.21 2.66
470 471 3.307242 GCTAGCTTCCACACGTATTGAAG 59.693 47.826 7.70 3.40 37.78 3.02
471 472 3.259064 GCTAGCTTCCACACGTATTGAA 58.741 45.455 7.70 0.00 0.00 2.69
474 475 2.028476 TGTGCTAGCTTCCACACGTATT 60.028 45.455 17.23 0.00 37.07 1.89
476 477 0.963225 TGTGCTAGCTTCCACACGTA 59.037 50.000 17.23 0.00 37.07 3.57
477 478 0.319900 CTGTGCTAGCTTCCACACGT 60.320 55.000 17.23 0.00 37.07 4.49
478 479 0.319900 ACTGTGCTAGCTTCCACACG 60.320 55.000 17.23 8.20 37.07 4.49
480 481 0.321671 GGACTGTGCTAGCTTCCACA 59.678 55.000 17.23 15.56 39.45 4.17
481 482 0.321671 TGGACTGTGCTAGCTTCCAC 59.678 55.000 17.23 6.11 0.00 4.02
482 483 1.279496 ATGGACTGTGCTAGCTTCCA 58.721 50.000 22.10 22.10 0.00 3.53
483 484 3.760580 ATATGGACTGTGCTAGCTTCC 57.239 47.619 17.23 15.66 0.00 3.46
484 485 8.833231 TTATTTATATGGACTGTGCTAGCTTC 57.167 34.615 17.23 9.73 0.00 3.86
546 632 2.511373 TCCGCGCAGGTGCATAAG 60.511 61.111 8.75 0.00 42.21 1.73
558 644 4.004314 AGATCGATATATATCCCTCCGCG 58.996 47.826 15.61 0.00 0.00 6.46
606 692 0.607217 GCCATGGCCATGATCGATGA 60.607 55.000 41.32 0.00 41.20 2.92
638 724 0.996727 CTCGCCGCCGTTTCAAAAAG 60.997 55.000 0.00 0.00 35.54 2.27
639 725 1.009449 CTCGCCGCCGTTTCAAAAA 60.009 52.632 0.00 0.00 35.54 1.94
640 726 2.634777 CTCGCCGCCGTTTCAAAA 59.365 55.556 0.00 0.00 35.54 2.44
641 727 4.020378 GCTCGCCGCCGTTTCAAA 62.020 61.111 0.00 0.00 35.54 2.69
693 782 0.457851 TTTCCGTTGGCAAACACCAG 59.542 50.000 0.00 0.00 41.82 4.00
722 811 1.215655 GGCACCGCGAGATGTATGTC 61.216 60.000 8.23 0.00 0.00 3.06
723 812 1.227263 GGCACCGCGAGATGTATGT 60.227 57.895 8.23 0.00 0.00 2.29
724 813 0.941463 GAGGCACCGCGAGATGTATG 60.941 60.000 8.23 0.00 0.00 2.39
725 814 1.364171 GAGGCACCGCGAGATGTAT 59.636 57.895 8.23 0.00 0.00 2.29
741 830 1.466697 GCGAGAGAGACAGGAAACGAG 60.467 57.143 0.00 0.00 0.00 4.18
787 876 2.472059 TACGACTCGCCGGCGTAAT 61.472 57.895 44.16 31.27 37.54 1.89
848 937 2.479650 GAGCAGTCGTCGCGTACT 59.520 61.111 5.77 5.82 0.00 2.73
940 1029 3.173668 GTATGGAGTTGCGATACCACA 57.826 47.619 4.53 0.00 33.53 4.17
978 1067 1.135141 GTGAGTGGAGACAGCAGCTAG 60.135 57.143 0.00 0.00 44.46 3.42
988 1077 2.894731 AGAGGACATTGTGAGTGGAGA 58.105 47.619 0.00 0.00 0.00 3.71
1015 1104 4.329545 AGCGATGTTGCCCACCGT 62.330 61.111 0.00 0.00 34.65 4.83
1101 1190 3.215975 GGAGTAGCCGTCTATCTTGACT 58.784 50.000 0.00 0.00 35.00 3.41
1167 1256 0.533755 GATGGCCTCCGATGGTGAAG 60.534 60.000 3.32 0.00 0.00 3.02
1295 1384 5.824624 TCAAGCAAACTCATCTTGAACTCTT 59.175 36.000 1.88 0.00 42.00 2.85
1335 1424 1.402968 CATCTGCTGTACAATGCCACC 59.597 52.381 4.79 0.00 0.00 4.61
1365 1848 3.494048 GGAGTCTGGAGAATGTGCCTATG 60.494 52.174 0.00 0.00 0.00 2.23
1366 1849 2.703007 GGAGTCTGGAGAATGTGCCTAT 59.297 50.000 0.00 0.00 0.00 2.57
1369 1852 0.615331 TGGAGTCTGGAGAATGTGCC 59.385 55.000 0.00 0.00 0.00 5.01
1385 1868 1.073025 ATGCTGCACCTTTCGTGGA 59.927 52.632 3.57 0.00 43.24 4.02
1386 1869 1.210931 CATGCTGCACCTTTCGTGG 59.789 57.895 3.57 0.00 43.24 4.94
1387 1870 1.210931 CCATGCTGCACCTTTCGTG 59.789 57.895 3.57 0.00 46.03 4.35
1389 1872 2.879907 CCCATGCTGCACCTTTCG 59.120 61.111 3.57 0.00 0.00 3.46
1434 1917 5.044402 CCTAAGGTAAAGGGATTCCTCCAAA 60.044 44.000 0.00 0.00 44.07 3.28
1501 1984 2.420687 GGATTGGCTCGGTGAAGATCTT 60.421 50.000 7.95 7.95 0.00 2.40
1533 2016 4.308458 TTGGACGGTGGCAGGACG 62.308 66.667 4.85 4.85 0.00 4.79
1537 2026 2.981560 GCATGTTGGACGGTGGCAG 61.982 63.158 0.00 0.00 0.00 4.85
1566 2055 1.291877 CGGCCAAGAGAAGTTGTCCG 61.292 60.000 2.24 0.00 41.99 4.79
1677 2166 2.286732 ATGGGGCCAAGGAGCTCT 60.287 61.111 14.64 0.00 32.16 4.09
1728 2217 1.059098 ACACTCTGGCTTCCATGTCA 58.941 50.000 0.00 0.00 30.82 3.58
1743 2232 1.166531 GGAGCAACGCCTTGAACACT 61.167 55.000 0.00 0.00 0.00 3.55
1783 2278 2.361104 GCCGCCTTTGTCCATGGA 60.361 61.111 11.44 11.44 0.00 3.41
1804 2299 1.741706 CAAATGCTGAGCAATCTCCGT 59.258 47.619 12.69 0.00 43.62 4.69
1895 2390 0.119155 ATCCTGACTCCACCCCTGAA 59.881 55.000 0.00 0.00 0.00 3.02
1896 2391 0.119155 AATCCTGACTCCACCCCTGA 59.881 55.000 0.00 0.00 0.00 3.86
1897 2392 0.995024 AAATCCTGACTCCACCCCTG 59.005 55.000 0.00 0.00 0.00 4.45
1898 2393 0.995024 CAAATCCTGACTCCACCCCT 59.005 55.000 0.00 0.00 0.00 4.79
1899 2394 0.034089 CCAAATCCTGACTCCACCCC 60.034 60.000 0.00 0.00 0.00 4.95
1900 2395 0.034089 CCCAAATCCTGACTCCACCC 60.034 60.000 0.00 0.00 0.00 4.61
1901 2396 0.698818 ACCCAAATCCTGACTCCACC 59.301 55.000 0.00 0.00 0.00 4.61
1902 2397 3.545703 CATACCCAAATCCTGACTCCAC 58.454 50.000 0.00 0.00 0.00 4.02
1903 2398 2.509548 CCATACCCAAATCCTGACTCCA 59.490 50.000 0.00 0.00 0.00 3.86
1904 2399 2.777692 TCCATACCCAAATCCTGACTCC 59.222 50.000 0.00 0.00 0.00 3.85
1905 2400 3.181450 CCTCCATACCCAAATCCTGACTC 60.181 52.174 0.00 0.00 0.00 3.36
1906 2401 2.780010 CCTCCATACCCAAATCCTGACT 59.220 50.000 0.00 0.00 0.00 3.41
1907 2402 2.158608 CCCTCCATACCCAAATCCTGAC 60.159 54.545 0.00 0.00 0.00 3.51
1908 2403 2.135189 CCCTCCATACCCAAATCCTGA 58.865 52.381 0.00 0.00 0.00 3.86
1909 2404 1.145738 CCCCTCCATACCCAAATCCTG 59.854 57.143 0.00 0.00 0.00 3.86
1910 2405 1.534338 CCCCTCCATACCCAAATCCT 58.466 55.000 0.00 0.00 0.00 3.24
1911 2406 0.178961 GCCCCTCCATACCCAAATCC 60.179 60.000 0.00 0.00 0.00 3.01
1912 2407 0.178961 GGCCCCTCCATACCCAAATC 60.179 60.000 0.00 0.00 34.01 2.17
1913 2408 0.928726 TGGCCCCTCCATACCCAAAT 60.929 55.000 0.00 0.00 40.72 2.32
1914 2409 1.149782 TTGGCCCCTCCATACCCAAA 61.150 55.000 0.00 0.00 46.04 3.28
1915 2410 1.545173 TTGGCCCCTCCATACCCAA 60.545 57.895 0.00 0.00 46.04 4.12
1916 2411 2.006415 CTTGGCCCCTCCATACCCA 61.006 63.158 0.00 0.00 46.04 4.51
1917 2412 2.927056 CTTGGCCCCTCCATACCC 59.073 66.667 0.00 0.00 46.04 3.69
1918 2413 2.195956 GCTTGGCCCCTCCATACC 59.804 66.667 0.00 0.00 46.04 2.73
1919 2414 2.195956 GGCTTGGCCCCTCCATAC 59.804 66.667 0.00 0.00 46.04 2.39
2024 2525 6.592607 CAGTCGTAGAGGCCACTTTAAATTAA 59.407 38.462 8.39 0.00 36.95 1.40
2091 2592 9.428097 GGTTGCTTTTTATCTTGAGAATTGATT 57.572 29.630 0.00 0.00 0.00 2.57
2092 2593 8.587608 TGGTTGCTTTTTATCTTGAGAATTGAT 58.412 29.630 0.00 0.00 0.00 2.57
2154 2750 9.731819 CGCAAGTATGTTTTTCTACTCTCTATA 57.268 33.333 0.00 0.00 0.00 1.31
2155 2751 7.707035 CCGCAAGTATGTTTTTCTACTCTCTAT 59.293 37.037 0.00 0.00 0.00 1.98
2186 2782 4.056050 ACACGTTACAAATCAGAGTCCAC 58.944 43.478 0.00 0.00 0.00 4.02
2194 2790 7.899178 AGTCATAATCACACGTTACAAATCA 57.101 32.000 0.00 0.00 0.00 2.57
2204 2800 6.228273 ACAAACAGAAGTCATAATCACACG 57.772 37.500 0.00 0.00 0.00 4.49
2210 2806 6.882610 TGCAGAACAAACAGAAGTCATAAT 57.117 33.333 0.00 0.00 0.00 1.28
2235 2831 3.252458 GGTTATGCCGGACATGGTAAATC 59.748 47.826 18.08 4.72 40.06 2.17
2276 2872 1.933853 CAAATCCGACAATCCGAGTCC 59.066 52.381 0.00 0.00 32.41 3.85
2286 2882 4.074627 TGTCCAAGTTACAAATCCGACA 57.925 40.909 0.00 0.00 0.00 4.35
2287 2883 4.693566 TGATGTCCAAGTTACAAATCCGAC 59.306 41.667 0.00 0.00 0.00 4.79
2290 2886 4.142381 GGCTGATGTCCAAGTTACAAATCC 60.142 45.833 0.00 0.00 0.00 3.01
2304 2900 5.412594 TGAAATTGTTAGTGAGGCTGATGTC 59.587 40.000 0.00 0.00 0.00 3.06
2336 2932 2.695613 GCCAGTTGCTTCAAGTTCTC 57.304 50.000 0.00 0.00 36.87 2.87
2380 2976 3.785486 AGAGAAAAGCAAAGCCAAACAC 58.215 40.909 0.00 0.00 0.00 3.32
2389 2985 3.058914 GCAGCTACGAAGAGAAAAGCAAA 60.059 43.478 0.00 0.00 0.00 3.68
2390 2986 2.480419 GCAGCTACGAAGAGAAAAGCAA 59.520 45.455 0.00 0.00 0.00 3.91
2469 3065 9.542462 GTATTAGTTCCTAACTGTGATGCAATA 57.458 33.333 2.59 0.00 42.84 1.90
2470 3066 8.046708 TGTATTAGTTCCTAACTGTGATGCAAT 58.953 33.333 2.59 0.00 42.84 3.56
2472 3068 6.941857 TGTATTAGTTCCTAACTGTGATGCA 58.058 36.000 2.59 0.00 42.84 3.96
2473 3069 7.011482 CCTTGTATTAGTTCCTAACTGTGATGC 59.989 40.741 2.59 0.08 42.84 3.91
2482 3333 9.742144 TGCAAATTACCTTGTATTAGTTCCTAA 57.258 29.630 0.00 0.00 0.00 2.69
2603 3454 3.262660 TGTCCAGTTGATGCTTCTGATCT 59.737 43.478 0.88 0.00 0.00 2.75
2619 3470 4.743057 TCTATGATTCAGTGGTGTCCAG 57.257 45.455 0.00 0.00 32.34 3.86
2679 3534 6.074648 TGTGGAATTGGTACTCCAGATTTTT 58.925 36.000 1.94 0.00 45.22 1.94
2727 3582 7.680730 AGAGCAAAGGTTTAATCTCTGTAGAA 58.319 34.615 0.00 0.00 34.73 2.10
2752 3607 1.070445 TCTCCCGCTTAACCAACGAAA 59.930 47.619 0.00 0.00 0.00 3.46
2771 3626 3.253188 TGGCTGCTGTACTTGTCAATTTC 59.747 43.478 0.00 0.00 0.00 2.17
2784 3639 2.584835 TTCAGGTATTTGGCTGCTGT 57.415 45.000 0.00 0.00 0.00 4.40
2837 3692 1.834856 CTGCTCTCAGGACCAAGCCA 61.835 60.000 0.00 0.00 36.68 4.75
2850 3705 2.057408 CCTCTTCTCGCCCTGCTCT 61.057 63.158 0.00 0.00 0.00 4.09
2880 3735 0.739462 CGCCCTTAATGTCGCTGACA 60.739 55.000 12.53 12.53 46.90 3.58
2884 3739 2.890474 CGCGCCCTTAATGTCGCT 60.890 61.111 0.00 0.00 44.72 4.93
2886 3741 2.237751 CCTCGCGCCCTTAATGTCG 61.238 63.158 0.00 0.00 0.00 4.35
2888 3743 2.513897 GCCTCGCGCCCTTAATGT 60.514 61.111 0.00 0.00 0.00 2.71
2913 3768 1.492319 CGCCGTTCCAGTTTTCGACA 61.492 55.000 0.00 0.00 0.00 4.35
2922 3777 4.124351 TAGTCGCCGCCGTTCCAG 62.124 66.667 0.00 0.00 35.54 3.86
2940 3795 7.394359 TCGTATTTAGGGTATACTACATGGGAC 59.606 40.741 2.25 0.00 0.00 4.46
2988 3843 2.368594 CTCTAGGTCCCCTGCCCA 59.631 66.667 0.00 0.00 34.61 5.36
2992 3847 1.152440 ATCGGCTCTAGGTCCCCTG 60.152 63.158 0.00 0.00 34.61 4.45
2999 3854 1.294780 GATGGGCATCGGCTCTAGG 59.705 63.158 0.00 0.00 42.67 3.02
3027 3882 4.313020 GCCCACTAGTAGGCCTACTATA 57.687 50.000 40.12 27.69 44.76 1.31
3028 3883 3.172471 GCCCACTAGTAGGCCTACTAT 57.828 52.381 40.12 29.52 44.76 2.12
3029 3884 2.671896 GCCCACTAGTAGGCCTACTA 57.328 55.000 38.36 38.36 43.98 1.82
3070 3925 5.443185 TTTGCAGATGTGAGAAAAGGAAG 57.557 39.130 0.00 0.00 0.00 3.46
3073 3928 3.985925 GCTTTTGCAGATGTGAGAAAAGG 59.014 43.478 20.04 8.98 46.58 3.11
3134 3989 1.440708 CCTTCTTGAGAGCAGCACAG 58.559 55.000 0.00 0.00 0.00 3.66
3139 3994 0.733729 GCATGCCTTCTTGAGAGCAG 59.266 55.000 6.36 0.00 35.81 4.24
3224 4079 0.809385 CAGATGGGCAACTGCTCTTG 59.191 55.000 2.75 0.00 43.37 3.02
3226 4081 0.403271 AACAGATGGGCAACTGCTCT 59.597 50.000 2.75 0.00 43.37 4.09
3363 4230 2.028876 TGAACAGTCCTTCACAGACGA 58.971 47.619 0.00 0.00 39.31 4.20
3364 4231 2.509052 TGAACAGTCCTTCACAGACG 57.491 50.000 0.00 0.00 39.31 4.18
3365 4232 4.636249 AGAATGAACAGTCCTTCACAGAC 58.364 43.478 0.00 0.00 32.95 3.51
3422 4289 9.713740 GCTACTATCAAGATTGTTTGAATCAAG 57.286 33.333 2.71 0.00 40.21 3.02
3476 4357 9.099454 GTTTCTCTCTCAGTTTTCAAACTTCTA 57.901 33.333 2.01 0.00 46.52 2.10
3481 4362 7.907563 CAGAAGTTTCTCTCTCAGTTTTCAAAC 59.092 37.037 0.00 0.00 34.74 2.93
3759 5313 3.830192 CCGCCATTGCCTTGGAGC 61.830 66.667 6.22 0.00 39.25 4.70
3769 5323 1.743995 GTCTTACGTGCCCGCCATT 60.744 57.895 0.00 0.00 37.70 3.16
3770 5324 2.125269 GTCTTACGTGCCCGCCAT 60.125 61.111 0.00 0.00 37.70 4.40
3771 5325 4.728102 CGTCTTACGTGCCCGCCA 62.728 66.667 0.00 0.00 36.74 5.69
3772 5326 4.424566 TCGTCTTACGTGCCCGCC 62.425 66.667 0.00 0.00 43.14 6.13
3773 5327 3.177249 GTCGTCTTACGTGCCCGC 61.177 66.667 0.00 0.00 43.14 6.13
3789 5343 4.457496 CTGACCGGCCGCAGATGT 62.457 66.667 23.64 14.77 34.06 3.06
3860 5417 4.100084 CATCCGAGGCCACCTGCA 62.100 66.667 5.01 0.00 43.89 4.41
3874 5431 0.601311 GACCTCGTAGGCATGGCATC 60.601 60.000 22.64 12.33 39.63 3.91
4015 5581 9.121517 GATCGAGCATACAAATGGATAAAATTG 57.878 33.333 0.00 0.00 33.38 2.32
4016 5582 8.299570 GGATCGAGCATACAAATGGATAAAATT 58.700 33.333 1.84 0.00 33.38 1.82
4030 5596 4.142988 TGAAAACAAACGGATCGAGCATAC 60.143 41.667 1.84 0.00 0.00 2.39
4055 5621 9.255304 GGTGCTAAATATTTTGTGAAACTGAAA 57.745 29.630 5.91 0.00 38.04 2.69
4056 5622 8.417106 TGGTGCTAAATATTTTGTGAAACTGAA 58.583 29.630 5.91 0.00 38.04 3.02
4057 5623 7.946207 TGGTGCTAAATATTTTGTGAAACTGA 58.054 30.769 5.91 0.00 38.04 3.41
4058 5624 7.867403 ACTGGTGCTAAATATTTTGTGAAACTG 59.133 33.333 5.91 4.78 38.04 3.16
4059 5625 7.951591 ACTGGTGCTAAATATTTTGTGAAACT 58.048 30.769 5.91 0.00 38.04 2.66
4060 5626 7.060633 CGACTGGTGCTAAATATTTTGTGAAAC 59.939 37.037 5.91 3.01 37.35 2.78
4061 5627 7.041030 TCGACTGGTGCTAAATATTTTGTGAAA 60.041 33.333 5.91 0.00 0.00 2.69
4062 5628 6.428465 TCGACTGGTGCTAAATATTTTGTGAA 59.572 34.615 5.91 0.00 0.00 3.18
4063 5629 5.935206 TCGACTGGTGCTAAATATTTTGTGA 59.065 36.000 5.91 0.00 0.00 3.58
4064 5630 6.176975 TCGACTGGTGCTAAATATTTTGTG 57.823 37.500 5.91 0.00 0.00 3.33
4065 5631 6.811253 TTCGACTGGTGCTAAATATTTTGT 57.189 33.333 5.91 0.00 0.00 2.83
4066 5632 7.593273 TGTTTTCGACTGGTGCTAAATATTTTG 59.407 33.333 5.91 5.62 0.00 2.44
4067 5633 7.593644 GTGTTTTCGACTGGTGCTAAATATTTT 59.406 33.333 5.91 0.00 0.00 1.82
4068 5634 7.081976 GTGTTTTCGACTGGTGCTAAATATTT 58.918 34.615 5.89 5.89 0.00 1.40
4069 5635 6.349033 GGTGTTTTCGACTGGTGCTAAATATT 60.349 38.462 0.00 0.00 0.00 1.28
4070 5636 5.123344 GGTGTTTTCGACTGGTGCTAAATAT 59.877 40.000 0.00 0.00 0.00 1.28
4071 5637 4.453136 GGTGTTTTCGACTGGTGCTAAATA 59.547 41.667 0.00 0.00 0.00 1.40
4072 5638 3.252458 GGTGTTTTCGACTGGTGCTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
4073 5639 2.614983 GGTGTTTTCGACTGGTGCTAAA 59.385 45.455 0.00 0.00 0.00 1.85
4074 5640 2.215196 GGTGTTTTCGACTGGTGCTAA 58.785 47.619 0.00 0.00 0.00 3.09
4075 5641 1.870580 CGGTGTTTTCGACTGGTGCTA 60.871 52.381 0.00 0.00 0.00 3.49
4076 5642 1.157870 CGGTGTTTTCGACTGGTGCT 61.158 55.000 0.00 0.00 0.00 4.40
4077 5643 1.155424 TCGGTGTTTTCGACTGGTGC 61.155 55.000 0.00 0.00 0.00 5.01
4078 5644 1.292061 TTCGGTGTTTTCGACTGGTG 58.708 50.000 0.00 0.00 36.30 4.17
4079 5645 2.027003 TTTCGGTGTTTTCGACTGGT 57.973 45.000 0.00 0.00 36.30 4.00
4080 5646 3.002862 TGAATTTCGGTGTTTTCGACTGG 59.997 43.478 0.00 0.00 36.30 4.00
4081 5647 4.203950 TGAATTTCGGTGTTTTCGACTG 57.796 40.909 0.00 0.00 36.30 3.51
4082 5648 3.875134 ACTGAATTTCGGTGTTTTCGACT 59.125 39.130 10.08 0.00 34.08 4.18
4083 5649 3.966218 CACTGAATTTCGGTGTTTTCGAC 59.034 43.478 24.26 0.00 46.05 4.20
4084 5650 4.203950 CACTGAATTTCGGTGTTTTCGA 57.796 40.909 24.26 0.00 46.05 3.71
4101 5667 9.801714 GCAAATCAAAATAACTGAAATTCACTG 57.198 29.630 0.00 0.00 0.00 3.66
4102 5668 9.545105 TGCAAATCAAAATAACTGAAATTCACT 57.455 25.926 0.00 0.00 0.00 3.41
4110 5676 8.772705 GGTCAAAATGCAAATCAAAATAACTGA 58.227 29.630 0.00 0.00 0.00 3.41
4111 5677 8.557864 TGGTCAAAATGCAAATCAAAATAACTG 58.442 29.630 0.00 0.00 0.00 3.16
4112 5678 8.674263 TGGTCAAAATGCAAATCAAAATAACT 57.326 26.923 0.00 0.00 0.00 2.24
4113 5679 9.727627 TTTGGTCAAAATGCAAATCAAAATAAC 57.272 25.926 0.00 0.00 0.00 1.89
4114 5680 9.947669 CTTTGGTCAAAATGCAAATCAAAATAA 57.052 25.926 0.00 0.00 0.00 1.40
4115 5681 9.118300 ACTTTGGTCAAAATGCAAATCAAAATA 57.882 25.926 0.00 0.00 0.00 1.40
4116 5682 7.998580 ACTTTGGTCAAAATGCAAATCAAAAT 58.001 26.923 0.00 0.00 0.00 1.82
4117 5683 7.388460 ACTTTGGTCAAAATGCAAATCAAAA 57.612 28.000 0.00 0.00 0.00 2.44
4118 5684 6.238049 CGACTTTGGTCAAAATGCAAATCAAA 60.238 34.615 0.00 0.00 42.21 2.69
4119 5685 5.233902 CGACTTTGGTCAAAATGCAAATCAA 59.766 36.000 0.00 0.00 42.21 2.57
4120 5686 4.744137 CGACTTTGGTCAAAATGCAAATCA 59.256 37.500 0.00 0.00 42.21 2.57
4121 5687 4.981674 TCGACTTTGGTCAAAATGCAAATC 59.018 37.500 0.00 0.00 42.21 2.17
4122 5688 4.942852 TCGACTTTGGTCAAAATGCAAAT 58.057 34.783 0.00 0.00 42.21 2.32
4123 5689 4.377839 TCGACTTTGGTCAAAATGCAAA 57.622 36.364 0.00 0.00 42.21 3.68
4124 5690 4.377839 TTCGACTTTGGTCAAAATGCAA 57.622 36.364 0.00 0.00 42.21 4.08
4125 5691 4.377839 TTTCGACTTTGGTCAAAATGCA 57.622 36.364 0.00 0.00 42.21 3.96
4126 5692 7.328249 TGAATATTTCGACTTTGGTCAAAATGC 59.672 33.333 5.62 0.00 38.86 3.56
4127 5693 8.638565 GTGAATATTTCGACTTTGGTCAAAATG 58.361 33.333 5.62 0.00 38.86 2.32
4128 5694 8.576442 AGTGAATATTTCGACTTTGGTCAAAAT 58.424 29.630 0.00 0.00 40.70 1.82
4129 5695 7.936584 AGTGAATATTTCGACTTTGGTCAAAA 58.063 30.769 0.00 0.00 42.21 2.44
4130 5696 7.504924 AGTGAATATTTCGACTTTGGTCAAA 57.495 32.000 0.00 0.00 42.21 2.69
4131 5697 7.227711 TCAAGTGAATATTTCGACTTTGGTCAA 59.772 33.333 5.98 0.00 42.21 3.18
4132 5698 6.708502 TCAAGTGAATATTTCGACTTTGGTCA 59.291 34.615 5.98 0.00 42.21 4.02
4133 5699 7.129109 TCAAGTGAATATTTCGACTTTGGTC 57.871 36.000 5.98 0.00 38.97 4.02
4134 5700 7.228706 ACTTCAAGTGAATATTTCGACTTTGGT 59.771 33.333 0.00 4.13 32.56 3.67
4135 5701 7.584987 ACTTCAAGTGAATATTTCGACTTTGG 58.415 34.615 0.00 3.72 32.56 3.28
4136 5702 8.282592 TGACTTCAAGTGAATATTTCGACTTTG 58.717 33.333 0.00 4.00 32.56 2.77
4137 5703 8.378172 TGACTTCAAGTGAATATTTCGACTTT 57.622 30.769 0.00 0.00 32.56 2.66
4138 5704 7.962964 TGACTTCAAGTGAATATTTCGACTT 57.037 32.000 0.00 0.00 34.01 3.01
4139 5705 7.962964 TTGACTTCAAGTGAATATTTCGACT 57.037 32.000 0.00 0.00 33.01 4.18
4140 5706 9.612620 AAATTGACTTCAAGTGAATATTTCGAC 57.387 29.630 2.35 0.00 39.47 4.20
4208 5774 8.190122 GCAATTTCATTCAGTGGTACATATGAA 58.810 33.333 10.38 7.92 45.89 2.57
4209 5775 7.201812 GGCAATTTCATTCAGTGGTACATATGA 60.202 37.037 10.38 0.00 44.52 2.15
4210 5776 6.919662 GGCAATTTCATTCAGTGGTACATATG 59.080 38.462 0.00 0.00 44.52 1.78
4211 5777 6.040842 GGGCAATTTCATTCAGTGGTACATAT 59.959 38.462 0.00 0.00 44.52 1.78
4212 5778 5.359576 GGGCAATTTCATTCAGTGGTACATA 59.640 40.000 0.00 0.00 44.52 2.29
4213 5779 4.160252 GGGCAATTTCATTCAGTGGTACAT 59.840 41.667 0.00 0.00 44.52 2.29
4214 5780 3.509575 GGGCAATTTCATTCAGTGGTACA 59.490 43.478 0.00 0.00 0.00 2.90
4215 5781 3.509575 TGGGCAATTTCATTCAGTGGTAC 59.490 43.478 0.00 0.00 0.00 3.34
4216 5782 3.772387 TGGGCAATTTCATTCAGTGGTA 58.228 40.909 0.00 0.00 0.00 3.25
4217 5783 2.607499 TGGGCAATTTCATTCAGTGGT 58.393 42.857 0.00 0.00 0.00 4.16
4218 5784 3.681593 TTGGGCAATTTCATTCAGTGG 57.318 42.857 0.00 0.00 0.00 4.00
4219 5785 7.852971 AATATTTGGGCAATTTCATTCAGTG 57.147 32.000 0.00 0.00 0.00 3.66
4220 5786 8.866970 AAAATATTTGGGCAATTTCATTCAGT 57.133 26.923 0.39 0.00 0.00 3.41
4222 5788 8.891720 GCTAAAATATTTGGGCAATTTCATTCA 58.108 29.630 16.05 0.00 0.00 2.57
4223 5789 9.112725 AGCTAAAATATTTGGGCAATTTCATTC 57.887 29.630 20.37 0.00 0.00 2.67
4224 5790 8.895737 CAGCTAAAATATTTGGGCAATTTCATT 58.104 29.630 20.37 0.00 0.00 2.57
4225 5791 8.266473 TCAGCTAAAATATTTGGGCAATTTCAT 58.734 29.630 20.37 3.43 0.00 2.57
4226 5792 7.619050 TCAGCTAAAATATTTGGGCAATTTCA 58.381 30.769 20.37 3.22 0.00 2.69
4227 5793 8.491331 TTCAGCTAAAATATTTGGGCAATTTC 57.509 30.769 20.37 0.00 0.00 2.17
4228 5794 8.860780 TTTCAGCTAAAATATTTGGGCAATTT 57.139 26.923 20.37 4.72 0.00 1.82
4229 5795 8.895737 CATTTCAGCTAAAATATTTGGGCAATT 58.104 29.630 20.37 1.34 0.00 2.32
4230 5796 7.012610 GCATTTCAGCTAAAATATTTGGGCAAT 59.987 33.333 20.37 12.40 0.00 3.56
4231 5797 6.315891 GCATTTCAGCTAAAATATTTGGGCAA 59.684 34.615 20.37 11.19 0.00 4.52
4232 5798 5.816777 GCATTTCAGCTAAAATATTTGGGCA 59.183 36.000 20.37 6.96 0.00 5.36
4233 5799 5.816777 TGCATTTCAGCTAAAATATTTGGGC 59.183 36.000 14.17 14.17 34.99 5.36
4234 5800 7.846644 TTGCATTTCAGCTAAAATATTTGGG 57.153 32.000 0.39 0.00 34.99 4.12
4246 5812 9.880157 AATCACTAAAATATTTGCATTTCAGCT 57.120 25.926 0.39 0.00 34.99 4.24
4247 5813 9.910511 CAATCACTAAAATATTTGCATTTCAGC 57.089 29.630 0.39 0.00 0.00 4.26
4248 5814 9.910511 GCAATCACTAAAATATTTGCATTTCAG 57.089 29.630 0.39 0.00 0.00 3.02
4249 5815 9.656040 AGCAATCACTAAAATATTTGCATTTCA 57.344 25.926 0.39 0.00 0.00 2.69
4250 5816 9.910511 CAGCAATCACTAAAATATTTGCATTTC 57.089 29.630 0.39 0.00 0.00 2.17
4251 5817 9.656040 TCAGCAATCACTAAAATATTTGCATTT 57.344 25.926 0.39 0.00 0.00 2.32
4252 5818 9.656040 TTCAGCAATCACTAAAATATTTGCATT 57.344 25.926 0.39 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.