Multiple sequence alignment - TraesCS7B01G361500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G361500 chr7B 100.000 2666 0 0 1 2666 623571254 623568589 0.000000e+00 4924.0
1 TraesCS7B01G361500 chr7B 89.503 181 15 4 1668 1846 677783331 677783509 2.670000e-55 226.0
2 TraesCS7B01G361500 chr7B 92.941 85 6 0 1 85 54502195 54502279 1.000000e-24 124.0
3 TraesCS7B01G361500 chr7B 86.139 101 13 1 2225 2324 312434034 312433934 1.010000e-19 108.0
4 TraesCS7B01G361500 chr7A 94.065 775 46 0 1667 2441 71976045 71975271 0.000000e+00 1177.0
5 TraesCS7B01G361500 chr7A 79.893 562 98 13 1668 2219 2859513 2858957 5.350000e-107 398.0
6 TraesCS7B01G361500 chr3D 93.935 775 45 2 1668 2441 585932307 585931534 0.000000e+00 1170.0
7 TraesCS7B01G361500 chr3D 83.276 1160 154 28 86 1224 31005487 31004347 0.000000e+00 1031.0
8 TraesCS7B01G361500 chr3D 82.773 1161 159 29 86 1224 31029860 31028719 0.000000e+00 998.0
9 TraesCS7B01G361500 chr3D 82.538 1174 150 32 86 1224 31055109 31053956 0.000000e+00 981.0
10 TraesCS7B01G361500 chr3D 82.973 370 53 6 1304 1670 31003866 31003504 2.560000e-85 326.0
11 TraesCS7B01G361500 chr3D 82.973 370 52 6 1304 1670 31053475 31053114 9.210000e-85 324.0
12 TraesCS7B01G361500 chr3D 82.703 370 54 6 1304 1670 31028238 31027876 1.190000e-83 320.0
13 TraesCS7B01G361500 chr3D 96.970 99 3 0 2343 2441 543684889 543684987 1.640000e-37 167.0
14 TraesCS7B01G361500 chr3D 93.220 59 4 0 1248 1306 31004268 31004210 1.310000e-13 87.9
15 TraesCS7B01G361500 chr3D 93.220 59 4 0 1248 1306 31028640 31028582 1.310000e-13 87.9
16 TraesCS7B01G361500 chr2B 93.702 778 38 5 1666 2443 717581383 717580617 0.000000e+00 1155.0
17 TraesCS7B01G361500 chr2B 80.876 1187 159 44 86 1224 797772698 797771532 0.000000e+00 872.0
18 TraesCS7B01G361500 chr2B 89.071 183 16 4 1666 1846 18843431 18843611 9.600000e-55 224.0
19 TraesCS7B01G361500 chr2B 88.514 148 7 6 2343 2484 667798234 667798091 1.270000e-38 171.0
20 TraesCS7B01G361500 chr2B 94.915 59 3 0 1248 1306 797812782 797812724 2.830000e-15 93.5
21 TraesCS7B01G361500 chr5D 93.540 774 45 4 1668 2441 426778714 426779482 0.000000e+00 1147.0
22 TraesCS7B01G361500 chr5D 82.084 1161 155 32 86 1224 542245478 542246607 0.000000e+00 942.0
23 TraesCS7B01G361500 chr5D 80.811 1110 144 40 86 1147 542211155 542212243 0.000000e+00 806.0
24 TraesCS7B01G361500 chr5D 88.462 156 2 7 2343 2483 441240076 441239922 9.810000e-40 174.0
25 TraesCS7B01G361500 chr5D 93.023 86 4 2 11 95 45951987 45952071 1.000000e-24 124.0
26 TraesCS7B01G361500 chr5D 94.915 59 3 0 1248 1306 542246686 542246744 2.830000e-15 93.5
27 TraesCS7B01G361500 chr7D 82.979 940 124 26 307 1224 74453502 74454427 0.000000e+00 817.0
28 TraesCS7B01G361500 chr7D 83.924 367 50 5 1304 1667 74454907 74455267 2.540000e-90 342.0
29 TraesCS7B01G361500 chr7D 88.649 185 17 4 1664 1846 39952161 39951979 3.450000e-54 222.0
30 TraesCS7B01G361500 chr7D 94.118 85 4 1 11 94 475513673 475513757 7.750000e-26 128.0
31 TraesCS7B01G361500 chr7D 94.915 59 3 0 1248 1306 74454506 74454564 2.830000e-15 93.5
32 TraesCS7B01G361500 chr2D 82.447 940 128 26 307 1224 15452119 15451195 0.000000e+00 787.0
33 TraesCS7B01G361500 chr2D 97.980 99 2 0 2343 2441 49994253 49994155 3.530000e-39 172.0
34 TraesCS7B01G361500 chr2D 93.023 86 5 1 10 94 134786734 134786819 1.000000e-24 124.0
35 TraesCS7B01G361500 chr2D 94.915 59 3 0 1248 1306 15451116 15451058 2.830000e-15 93.5
36 TraesCS7B01G361500 chr1A 78.966 1141 143 50 152 1224 535734817 535733706 0.000000e+00 688.0
37 TraesCS7B01G361500 chr1A 89.011 182 16 4 1667 1846 550433967 550433788 3.450000e-54 222.0
38 TraesCS7B01G361500 chr1A 96.296 81 2 1 15 94 76829016 76829096 5.990000e-27 132.0
39 TraesCS7B01G361500 chr4A 86.922 497 55 7 703 1197 615009388 615009876 1.400000e-152 549.0
40 TraesCS7B01G361500 chr4A 90.659 364 34 0 1304 1667 515454785 515455148 3.990000e-133 484.0
41 TraesCS7B01G361500 chr4A 81.090 587 73 11 85 660 515453998 515454557 4.080000e-118 435.0
42 TraesCS7B01G361500 chr4A 80.167 479 65 20 181 635 615008776 615009248 5.500000e-87 331.0
43 TraesCS7B01G361500 chr6A 91.008 367 33 0 1304 1670 18537188 18536822 1.840000e-136 496.0
44 TraesCS7B01G361500 chr6A 81.942 587 68 11 85 660 18537982 18537423 1.870000e-126 462.0
45 TraesCS7B01G361500 chr5B 83.747 363 52 5 1304 1665 546721786 546722142 1.180000e-88 337.0
46 TraesCS7B01G361500 chr5B 90.625 96 4 5 11 104 517370055 517369963 3.600000e-24 122.0
47 TraesCS7B01G361500 chr6D 76.573 572 66 46 86 614 375102625 375102079 4.410000e-63 252.0
48 TraesCS7B01G361500 chr2A 76.010 421 71 14 263 657 46346556 46346140 9.740000e-45 191.0
49 TraesCS7B01G361500 chr3B 97.980 99 2 0 2343 2441 805556352 805556450 3.530000e-39 172.0
50 TraesCS7B01G361500 chr4D 94.118 85 4 1 11 94 344369193 344369109 7.750000e-26 128.0
51 TraesCS7B01G361500 chr4D 93.023 86 4 2 11 95 359125564 359125480 1.000000e-24 124.0
52 TraesCS7B01G361500 chr4B 91.209 91 6 2 11 100 302860615 302860704 3.600000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G361500 chr7B 623568589 623571254 2665 True 4924.000000 4924 100.000000 1 2666 1 chr7B.!!$R2 2665
1 TraesCS7B01G361500 chr7A 71975271 71976045 774 True 1177.000000 1177 94.065000 1667 2441 1 chr7A.!!$R2 774
2 TraesCS7B01G361500 chr7A 2858957 2859513 556 True 398.000000 398 79.893000 1668 2219 1 chr7A.!!$R1 551
3 TraesCS7B01G361500 chr3D 585931534 585932307 773 True 1170.000000 1170 93.935000 1668 2441 1 chr3D.!!$R1 773
4 TraesCS7B01G361500 chr3D 31053114 31055109 1995 True 652.500000 981 82.755500 86 1670 2 chr3D.!!$R4 1584
5 TraesCS7B01G361500 chr3D 31003504 31005487 1983 True 481.633333 1031 86.489667 86 1670 3 chr3D.!!$R2 1584
6 TraesCS7B01G361500 chr3D 31027876 31029860 1984 True 468.633333 998 86.232000 86 1670 3 chr3D.!!$R3 1584
7 TraesCS7B01G361500 chr2B 717580617 717581383 766 True 1155.000000 1155 93.702000 1666 2443 1 chr2B.!!$R2 777
8 TraesCS7B01G361500 chr2B 797771532 797772698 1166 True 872.000000 872 80.876000 86 1224 1 chr2B.!!$R3 1138
9 TraesCS7B01G361500 chr5D 426778714 426779482 768 False 1147.000000 1147 93.540000 1668 2441 1 chr5D.!!$F2 773
10 TraesCS7B01G361500 chr5D 542211155 542212243 1088 False 806.000000 806 80.811000 86 1147 1 chr5D.!!$F3 1061
11 TraesCS7B01G361500 chr5D 542245478 542246744 1266 False 517.750000 942 88.499500 86 1306 2 chr5D.!!$F4 1220
12 TraesCS7B01G361500 chr7D 74453502 74455267 1765 False 417.500000 817 87.272667 307 1667 3 chr7D.!!$F2 1360
13 TraesCS7B01G361500 chr2D 15451058 15452119 1061 True 440.250000 787 88.681000 307 1306 2 chr2D.!!$R2 999
14 TraesCS7B01G361500 chr1A 535733706 535734817 1111 True 688.000000 688 78.966000 152 1224 1 chr1A.!!$R1 1072
15 TraesCS7B01G361500 chr4A 515453998 515455148 1150 False 459.500000 484 85.874500 85 1667 2 chr4A.!!$F1 1582
16 TraesCS7B01G361500 chr4A 615008776 615009876 1100 False 440.000000 549 83.544500 181 1197 2 chr4A.!!$F2 1016
17 TraesCS7B01G361500 chr6A 18536822 18537982 1160 True 479.000000 496 86.475000 85 1670 2 chr6A.!!$R1 1585
18 TraesCS7B01G361500 chr6D 375102079 375102625 546 True 252.000000 252 76.573000 86 614 1 chr6D.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 257 0.179062 GTCGGAGGCAGAGCATGAAT 60.179 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2831 0.10576 GCTCTCCTCTCCATCCCTCA 60.106 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.803315 TCGGAGCAAATTATGTCTATATACATC 57.197 33.333 7.00 0.00 40.52 3.06
30 31 9.035607 CGGAGCAAATTATGTCTATATACATCC 57.964 37.037 7.00 1.24 40.52 3.51
31 32 9.035607 GGAGCAAATTATGTCTATATACATCCG 57.964 37.037 7.00 0.00 40.52 4.18
32 33 9.587772 GAGCAAATTATGTCTATATACATCCGT 57.412 33.333 7.00 0.00 40.52 4.69
39 40 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
41 42 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
42 43 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
43 44 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
44 45 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
45 46 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
46 47 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
47 48 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
48 49 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
49 50 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
50 51 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
51 52 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
52 53 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
53 54 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
54 55 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
55 56 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
56 57 7.065803 CGTATGTGGTAGTCCATTTGAAATCTT 59.934 37.037 0.00 0.00 46.20 2.40
57 58 7.781324 ATGTGGTAGTCCATTTGAAATCTTT 57.219 32.000 0.00 0.00 46.20 2.52
58 59 8.877864 ATGTGGTAGTCCATTTGAAATCTTTA 57.122 30.769 0.00 0.00 46.20 1.85
59 60 8.698973 TGTGGTAGTCCATTTGAAATCTTTAA 57.301 30.769 0.00 0.00 46.20 1.52
60 61 9.137459 TGTGGTAGTCCATTTGAAATCTTTAAA 57.863 29.630 0.00 0.00 46.20 1.52
61 62 9.974980 GTGGTAGTCCATTTGAAATCTTTAAAA 57.025 29.630 0.00 0.00 46.20 1.52
91 92 6.694445 ATATTTAGGAACTGAGGCATAGCT 57.306 37.500 0.00 0.00 41.52 3.32
115 116 2.427812 GGGTACTGTTCAGCTAGAGGAC 59.572 54.545 0.00 0.00 0.00 3.85
116 117 3.090037 GGTACTGTTCAGCTAGAGGACA 58.910 50.000 0.00 0.00 0.00 4.02
117 118 3.119424 GGTACTGTTCAGCTAGAGGACAC 60.119 52.174 0.00 0.00 0.00 3.67
171 172 1.983224 CCCGTGACTCTGGTCCATT 59.017 57.895 0.00 0.00 41.47 3.16
176 187 0.321564 TGACTCTGGTCCATTTGCGG 60.322 55.000 0.00 0.00 41.47 5.69
191 202 2.987125 CGGTCCCCCTTGTACCTG 59.013 66.667 0.00 0.00 0.00 4.00
245 257 0.179062 GTCGGAGGCAGAGCATGAAT 60.179 55.000 0.00 0.00 0.00 2.57
280 292 1.686325 GCGGGAGGCAGGATTGTCTA 61.686 60.000 0.00 0.00 39.97 2.59
289 301 3.338249 GCAGGATTGTCTAGTGCAAGAA 58.662 45.455 0.00 0.00 34.18 2.52
291 303 4.573900 CAGGATTGTCTAGTGCAAGAAGT 58.426 43.478 0.00 0.00 0.00 3.01
327 381 3.792736 CCGCCGGGGAATTCCAGA 61.793 66.667 25.67 0.00 38.47 3.86
406 474 9.360093 GTACAGATCTATCACAGGTAAATATGC 57.640 37.037 0.00 0.00 0.00 3.14
439 507 2.293122 TGCGCATAGGTTATTTGGATGC 59.707 45.455 5.66 0.00 39.59 3.91
464 540 1.550327 TGTATTTTGGCATTGGGCGA 58.450 45.000 0.00 0.00 46.16 5.54
475 558 1.878088 CATTGGGCGAGATGGAGATTG 59.122 52.381 0.00 0.00 0.00 2.67
542 632 1.130561 GCAATAGCCGTCAGGTGTTTC 59.869 52.381 0.00 0.00 40.50 2.78
543 633 1.393539 CAATAGCCGTCAGGTGTTTCG 59.606 52.381 0.00 0.00 40.50 3.46
551 641 4.805192 GCCGTCAGGTGTTTCGTATATAAA 59.195 41.667 0.00 0.00 40.50 1.40
608 700 5.731599 AATCTTGAATCTCGATCTGTTGC 57.268 39.130 0.00 0.00 0.00 4.17
610 702 4.428209 TCTTGAATCTCGATCTGTTGCTC 58.572 43.478 0.00 0.00 0.00 4.26
642 734 2.031120 TCCGGGGATGCAAAATGAATC 58.969 47.619 0.00 0.00 31.40 2.52
652 744 6.862608 GGATGCAAAATGAATCGCACATTATA 59.137 34.615 0.00 0.00 33.04 0.98
690 861 2.743938 AGATTAGCTGATACGTTGCCG 58.256 47.619 0.00 0.00 40.83 5.69
693 864 0.812549 TAGCTGATACGTTGCCGTCA 59.187 50.000 0.00 0.00 46.28 4.35
696 867 1.787155 GCTGATACGTTGCCGTCATAG 59.213 52.381 0.00 0.00 46.28 2.23
698 869 3.300857 CTGATACGTTGCCGTCATAGAG 58.699 50.000 0.00 0.00 46.28 2.43
699 870 2.946990 TGATACGTTGCCGTCATAGAGA 59.053 45.455 0.00 0.00 46.28 3.10
701 872 0.179134 ACGTTGCCGTCATAGAGAGC 60.179 55.000 0.00 0.00 46.28 4.09
720 891 8.910351 AGAGAGCTCAATTTTTGTAGTTAGTT 57.090 30.769 17.77 0.00 0.00 2.24
721 892 9.343539 AGAGAGCTCAATTTTTGTAGTTAGTTT 57.656 29.630 17.77 0.00 0.00 2.66
788 961 6.223852 ACAGCCGTAGTATAGAAATCAATGG 58.776 40.000 0.00 0.00 0.00 3.16
793 966 8.403236 GCCGTAGTATAGAAATCAATGGTTTTT 58.597 33.333 0.00 0.00 0.00 1.94
904 1078 1.596934 GACGAATCAGACAGGGGCA 59.403 57.895 0.00 0.00 0.00 5.36
935 1109 8.969267 GTATAACGATCCTACTTTCAGATGTTG 58.031 37.037 0.00 0.00 0.00 3.33
1026 1202 1.061735 TGGGGTGGCACTCTATCCATA 60.062 52.381 18.51 0.05 34.47 2.74
1052 1228 2.736721 TGATCAGCAAGTTAAGCGTCAC 59.263 45.455 0.00 0.00 37.01 3.67
1104 1280 4.574674 TGAGGTCAGACAAGCCATTATT 57.425 40.909 2.17 0.00 0.00 1.40
1178 1354 1.152881 GAATCCCGGCAGCTGGAAT 60.153 57.895 23.25 3.19 33.54 3.01
1190 1366 3.409570 CAGCTGGAATAGATGTGATGGG 58.590 50.000 5.57 0.00 38.01 4.00
1200 1376 3.087031 AGATGTGATGGGCAAAACTCTG 58.913 45.455 0.00 0.00 0.00 3.35
1224 1400 1.134670 AGGAGCGAGACTGTATTTGCC 60.135 52.381 0.00 0.00 0.00 4.52
1225 1401 1.291132 GAGCGAGACTGTATTTGCCC 58.709 55.000 0.00 0.00 0.00 5.36
1227 1403 1.210478 AGCGAGACTGTATTTGCCCAT 59.790 47.619 0.00 0.00 0.00 4.00
1228 1404 2.434336 AGCGAGACTGTATTTGCCCATA 59.566 45.455 0.00 0.00 0.00 2.74
1229 1405 3.118408 AGCGAGACTGTATTTGCCCATAA 60.118 43.478 0.00 0.00 0.00 1.90
1231 1409 3.809832 CGAGACTGTATTTGCCCATAAGG 59.190 47.826 0.00 0.00 39.47 2.69
1243 1421 0.829182 CCATAAGGGGATGCTTGGGC 60.829 60.000 0.00 0.00 39.26 5.36
1287 1518 0.957395 AACAGAGGTGGCTGCATTCG 60.957 55.000 0.50 0.00 39.51 3.34
1295 1526 1.171549 TGGCTGCATTCGAAACTGCA 61.172 50.000 21.60 21.60 45.60 4.41
1311 1895 7.024171 CGAAACTGCATACATCGTATCTAGAT 58.976 38.462 10.73 10.73 0.00 1.98
1367 1951 5.640147 TGATGTGTTCCCCAGAATAAAAGT 58.360 37.500 0.00 0.00 33.67 2.66
1385 1969 3.547649 AGTTTTCACGGCGGATAAAAC 57.452 42.857 25.62 25.62 40.46 2.43
1434 2018 2.614057 GCCGATGGATTCAACGAAGAAT 59.386 45.455 5.04 6.77 40.87 2.40
1435 2019 3.807622 GCCGATGGATTCAACGAAGAATA 59.192 43.478 5.04 0.00 40.87 1.75
1454 2038 9.298774 GAAGAATAGAGATTTCATTTTTGGCAG 57.701 33.333 0.00 0.00 0.00 4.85
1479 2063 1.066787 GCAGTAAGTCTCCACCCAGAC 60.067 57.143 0.00 0.00 42.91 3.51
1513 2097 4.337985 CAGTTTAGCACTGCATCTTCAG 57.662 45.455 3.30 0.00 46.70 3.02
1529 2113 1.974265 TCAGAGAGAGGGCATACTCG 58.026 55.000 0.00 0.00 42.31 4.18
1533 2117 0.180642 AGAGAGGGCATACTCGTCGA 59.819 55.000 0.00 0.00 42.31 4.20
1593 2179 3.250617 TCAGCATATTCCAGGGCAGATA 58.749 45.455 0.00 0.00 0.00 1.98
1603 2189 4.673968 TCCAGGGCAGATAACGACTATAT 58.326 43.478 0.00 0.00 0.00 0.86
1614 2200 7.846107 CAGATAACGACTATATTGCACAACAAC 59.154 37.037 0.00 0.00 42.27 3.32
1729 2317 4.028490 TCATTTGGACCGGCCGCT 62.028 61.111 22.85 5.96 40.66 5.52
1842 2430 4.308458 CCAACCACTCACCGGCGA 62.308 66.667 9.30 0.00 0.00 5.54
2001 2594 4.395080 GACGATGAATGACGGCGA 57.605 55.556 16.62 0.00 0.00 5.54
2063 2656 2.734755 AATCAGGCCGATTCATTCCA 57.265 45.000 14.54 0.00 40.48 3.53
2116 2709 0.536460 GGACATGGTGGTTGGTCGTT 60.536 55.000 0.00 0.00 0.00 3.85
2222 2818 2.954753 GCGAAACGTGTCCTGCAGG 61.955 63.158 27.87 27.87 38.79 4.85
2235 2831 2.236223 CTGCAGGATCGAGGCACTGT 62.236 60.000 5.57 0.00 41.55 3.55
2281 2877 2.447572 TGGCTGGTGGAGTGGTGA 60.448 61.111 0.00 0.00 0.00 4.02
2325 2921 0.688087 GGATGGGAGAGGAAGACGGT 60.688 60.000 0.00 0.00 0.00 4.83
2408 3004 0.960364 GCTTTGTCGGGCCTGATTCA 60.960 55.000 19.55 9.39 0.00 2.57
2423 3019 1.000283 GATTCATGAGCTCGGACCGAT 60.000 52.381 18.71 2.69 34.61 4.18
2457 3053 4.367023 CCACGAGCCGGTCCGAAA 62.367 66.667 21.13 0.00 0.00 3.46
2458 3054 2.809601 CACGAGCCGGTCCGAAAG 60.810 66.667 21.13 3.65 0.00 2.62
2470 3066 2.049433 CGAAAGGACCGCTCGTGT 60.049 61.111 9.41 0.00 0.00 4.49
2471 3067 2.087009 CGAAAGGACCGCTCGTGTC 61.087 63.158 9.41 3.44 0.00 3.67
2472 3068 2.049433 AAAGGACCGCTCGTGTCG 60.049 61.111 0.00 0.00 33.46 4.35
2473 3069 2.744307 GAAAGGACCGCTCGTGTCGT 62.744 60.000 0.00 3.75 33.46 4.34
2474 3070 2.744307 AAAGGACCGCTCGTGTCGTC 62.744 60.000 6.58 0.00 33.46 4.20
2475 3071 4.773117 GGACCGCTCGTGTCGTCC 62.773 72.222 8.64 8.64 33.46 4.79
2476 3072 4.034258 GACCGCTCGTGTCGTCCA 62.034 66.667 0.00 0.00 0.00 4.02
2477 3073 4.338539 ACCGCTCGTGTCGTCCAC 62.339 66.667 0.00 0.00 40.89 4.02
2480 3076 3.681835 GCTCGTGTCGTCCACCCT 61.682 66.667 3.10 0.00 41.26 4.34
2481 3077 2.258591 CTCGTGTCGTCCACCCTG 59.741 66.667 3.10 0.00 41.26 4.45
2482 3078 2.203379 TCGTGTCGTCCACCCTGA 60.203 61.111 3.10 0.00 41.26 3.86
2483 3079 2.201436 CTCGTGTCGTCCACCCTGAG 62.201 65.000 3.10 1.49 41.26 3.35
2484 3080 2.657237 GTGTCGTCCACCCTGAGG 59.343 66.667 0.00 0.00 38.18 3.86
2485 3081 3.311110 TGTCGTCCACCCTGAGGC 61.311 66.667 0.00 0.00 36.11 4.70
2486 3082 2.997897 GTCGTCCACCCTGAGGCT 60.998 66.667 0.00 0.00 36.11 4.58
2487 3083 2.203788 TCGTCCACCCTGAGGCTT 60.204 61.111 0.00 0.00 36.11 4.35
2488 3084 2.046892 CGTCCACCCTGAGGCTTG 60.047 66.667 0.00 0.00 36.11 4.01
2489 3085 2.583441 CGTCCACCCTGAGGCTTGA 61.583 63.158 0.00 0.00 36.11 3.02
2490 3086 1.003233 GTCCACCCTGAGGCTTGAC 60.003 63.158 0.00 0.00 36.11 3.18
2491 3087 1.461268 TCCACCCTGAGGCTTGACA 60.461 57.895 0.00 0.00 36.11 3.58
2492 3088 1.302832 CCACCCTGAGGCTTGACAC 60.303 63.158 0.00 0.00 36.11 3.67
2493 3089 1.451504 CACCCTGAGGCTTGACACA 59.548 57.895 0.00 0.00 36.11 3.72
2494 3090 0.037303 CACCCTGAGGCTTGACACAT 59.963 55.000 0.00 0.00 36.11 3.21
2495 3091 0.326264 ACCCTGAGGCTTGACACATC 59.674 55.000 0.00 0.00 36.11 3.06
2496 3092 0.325933 CCCTGAGGCTTGACACATCA 59.674 55.000 0.00 0.00 0.00 3.07
2497 3093 1.678123 CCCTGAGGCTTGACACATCAG 60.678 57.143 0.00 1.78 35.83 2.90
2498 3094 1.735386 CTGAGGCTTGACACATCAGG 58.265 55.000 0.00 0.00 35.83 3.86
2499 3095 1.002888 CTGAGGCTTGACACATCAGGT 59.997 52.381 0.00 0.00 35.83 4.00
2513 3109 3.778955 AGGTGACACTCCTGACCG 58.221 61.111 5.39 0.00 33.62 4.79
2514 3110 2.048127 GGTGACACTCCTGACCGC 60.048 66.667 5.39 0.00 0.00 5.68
2515 3111 2.734591 GTGACACTCCTGACCGCA 59.265 61.111 0.00 0.00 0.00 5.69
2516 3112 1.069090 GTGACACTCCTGACCGCAA 59.931 57.895 0.00 0.00 0.00 4.85
2517 3113 0.320771 GTGACACTCCTGACCGCAAT 60.321 55.000 0.00 0.00 0.00 3.56
2518 3114 0.320683 TGACACTCCTGACCGCAATG 60.321 55.000 0.00 0.00 0.00 2.82
2519 3115 0.320771 GACACTCCTGACCGCAATGT 60.321 55.000 0.00 0.00 0.00 2.71
2520 3116 0.108585 ACACTCCTGACCGCAATGTT 59.891 50.000 0.00 0.00 0.00 2.71
2521 3117 0.518636 CACTCCTGACCGCAATGTTG 59.481 55.000 0.00 0.00 0.00 3.33
2522 3118 0.108585 ACTCCTGACCGCAATGTTGT 59.891 50.000 0.00 0.00 0.00 3.32
2523 3119 1.238439 CTCCTGACCGCAATGTTGTT 58.762 50.000 0.00 0.00 0.00 2.83
2524 3120 1.608590 CTCCTGACCGCAATGTTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
2525 3121 1.606668 TCCTGACCGCAATGTTGTTTC 59.393 47.619 0.00 0.00 0.00 2.78
2526 3122 1.336440 CCTGACCGCAATGTTGTTTCA 59.664 47.619 0.00 0.00 0.00 2.69
2527 3123 2.384382 CTGACCGCAATGTTGTTTCAC 58.616 47.619 0.00 0.00 0.00 3.18
2528 3124 1.745653 TGACCGCAATGTTGTTTCACA 59.254 42.857 0.00 0.00 0.00 3.58
2529 3125 2.360483 TGACCGCAATGTTGTTTCACAT 59.640 40.909 0.00 0.00 39.17 3.21
2530 3126 3.565902 TGACCGCAATGTTGTTTCACATA 59.434 39.130 0.00 0.00 36.30 2.29
2531 3127 4.036852 TGACCGCAATGTTGTTTCACATAA 59.963 37.500 0.00 0.00 36.30 1.90
2532 3128 5.132897 ACCGCAATGTTGTTTCACATAAT 57.867 34.783 0.00 0.00 36.30 1.28
2533 3129 6.072452 TGACCGCAATGTTGTTTCACATAATA 60.072 34.615 0.00 0.00 36.30 0.98
2534 3130 6.682746 ACCGCAATGTTGTTTCACATAATAA 58.317 32.000 0.00 0.00 36.30 1.40
2535 3131 7.319646 ACCGCAATGTTGTTTCACATAATAAT 58.680 30.769 0.00 0.00 36.30 1.28
2536 3132 7.816995 ACCGCAATGTTGTTTCACATAATAATT 59.183 29.630 0.00 0.00 36.30 1.40
2537 3133 9.295214 CCGCAATGTTGTTTCACATAATAATTA 57.705 29.630 0.00 0.00 36.30 1.40
2552 3148 8.409413 CATAATAATTATGTGCTGTCGAAACG 57.591 34.615 0.00 0.00 38.51 3.60
2553 3149 6.417191 AATAATTATGTGCTGTCGAAACGT 57.583 33.333 0.00 0.00 0.00 3.99
2554 3150 3.991605 ATTATGTGCTGTCGAAACGTC 57.008 42.857 0.00 0.00 0.00 4.34
2555 3151 2.425578 TATGTGCTGTCGAAACGTCA 57.574 45.000 0.00 0.00 0.00 4.35
2556 3152 1.577468 ATGTGCTGTCGAAACGTCAA 58.423 45.000 0.00 0.00 0.00 3.18
2557 3153 1.577468 TGTGCTGTCGAAACGTCAAT 58.423 45.000 0.00 0.00 0.00 2.57
2558 3154 1.525197 TGTGCTGTCGAAACGTCAATC 59.475 47.619 0.00 0.00 0.00 2.67
2559 3155 1.136336 GTGCTGTCGAAACGTCAATCC 60.136 52.381 0.00 0.00 0.00 3.01
2560 3156 1.270094 TGCTGTCGAAACGTCAATCCT 60.270 47.619 0.00 0.00 0.00 3.24
2561 3157 1.798813 GCTGTCGAAACGTCAATCCTT 59.201 47.619 0.00 0.00 0.00 3.36
2562 3158 2.223377 GCTGTCGAAACGTCAATCCTTT 59.777 45.455 0.00 0.00 0.00 3.11
2563 3159 3.303791 GCTGTCGAAACGTCAATCCTTTT 60.304 43.478 0.00 0.00 0.00 2.27
2564 3160 4.084223 GCTGTCGAAACGTCAATCCTTTTA 60.084 41.667 0.00 0.00 0.00 1.52
2565 3161 5.559417 GCTGTCGAAACGTCAATCCTTTTAA 60.559 40.000 0.00 0.00 0.00 1.52
2566 3162 5.981174 TGTCGAAACGTCAATCCTTTTAAG 58.019 37.500 0.00 0.00 0.00 1.85
2567 3163 5.524646 TGTCGAAACGTCAATCCTTTTAAGT 59.475 36.000 0.00 0.00 0.00 2.24
2568 3164 5.844396 GTCGAAACGTCAATCCTTTTAAGTG 59.156 40.000 0.00 0.00 0.00 3.16
2569 3165 5.754406 TCGAAACGTCAATCCTTTTAAGTGA 59.246 36.000 0.00 0.00 0.00 3.41
2570 3166 6.425721 TCGAAACGTCAATCCTTTTAAGTGAT 59.574 34.615 0.00 0.00 0.00 3.06
2571 3167 6.519761 CGAAACGTCAATCCTTTTAAGTGATG 59.480 38.462 0.00 0.00 0.00 3.07
2572 3168 7.504924 AAACGTCAATCCTTTTAAGTGATGA 57.495 32.000 0.00 0.00 0.00 2.92
2573 3169 6.481954 ACGTCAATCCTTTTAAGTGATGAC 57.518 37.500 7.42 7.67 0.00 3.06
2574 3170 5.995282 ACGTCAATCCTTTTAAGTGATGACA 59.005 36.000 13.95 0.00 0.00 3.58
2575 3171 6.655003 ACGTCAATCCTTTTAAGTGATGACAT 59.345 34.615 13.95 0.00 0.00 3.06
2576 3172 7.822334 ACGTCAATCCTTTTAAGTGATGACATA 59.178 33.333 13.95 0.00 0.00 2.29
2577 3173 8.116753 CGTCAATCCTTTTAAGTGATGACATAC 58.883 37.037 13.95 0.00 0.00 2.39
2578 3174 8.116753 GTCAATCCTTTTAAGTGATGACATACG 58.883 37.037 0.00 0.00 0.00 3.06
2579 3175 7.822334 TCAATCCTTTTAAGTGATGACATACGT 59.178 33.333 0.00 0.00 0.00 3.57
2580 3176 8.450964 CAATCCTTTTAAGTGATGACATACGTT 58.549 33.333 0.00 0.00 0.00 3.99
2581 3177 7.972832 TCCTTTTAAGTGATGACATACGTTT 57.027 32.000 0.00 0.00 0.00 3.60
2582 3178 8.025243 TCCTTTTAAGTGATGACATACGTTTC 57.975 34.615 0.00 0.00 0.00 2.78
2583 3179 7.876068 TCCTTTTAAGTGATGACATACGTTTCT 59.124 33.333 0.00 0.00 0.00 2.52
2584 3180 9.146984 CCTTTTAAGTGATGACATACGTTTCTA 57.853 33.333 0.00 0.00 0.00 2.10
2589 3185 7.360575 AGTGATGACATACGTTTCTAAAACC 57.639 36.000 0.00 0.00 0.00 3.27
2590 3186 6.932400 AGTGATGACATACGTTTCTAAAACCA 59.068 34.615 0.00 0.00 0.00 3.67
2591 3187 7.606456 AGTGATGACATACGTTTCTAAAACCAT 59.394 33.333 0.00 0.00 0.00 3.55
2592 3188 8.875803 GTGATGACATACGTTTCTAAAACCATA 58.124 33.333 0.00 0.00 0.00 2.74
2593 3189 9.607988 TGATGACATACGTTTCTAAAACCATAT 57.392 29.630 0.00 0.00 0.00 1.78
2594 3190 9.864034 GATGACATACGTTTCTAAAACCATATG 57.136 33.333 0.00 14.15 0.00 1.78
2595 3191 9.607988 ATGACATACGTTTCTAAAACCATATGA 57.392 29.630 18.76 6.78 0.00 2.15
2596 3192 8.875803 TGACATACGTTTCTAAAACCATATGAC 58.124 33.333 18.76 15.31 0.00 3.06
2597 3193 9.095065 GACATACGTTTCTAAAACCATATGACT 57.905 33.333 18.76 6.48 0.00 3.41
2598 3194 8.879759 ACATACGTTTCTAAAACCATATGACTG 58.120 33.333 18.76 0.00 0.00 3.51
2599 3195 9.093970 CATACGTTTCTAAAACCATATGACTGA 57.906 33.333 3.65 0.00 0.00 3.41
2600 3196 9.832445 ATACGTTTCTAAAACCATATGACTGAT 57.168 29.630 3.65 0.00 0.00 2.90
2601 3197 8.197988 ACGTTTCTAAAACCATATGACTGATC 57.802 34.615 3.65 0.00 0.00 2.92
2602 3198 8.041323 ACGTTTCTAAAACCATATGACTGATCT 58.959 33.333 3.65 0.00 0.00 2.75
2603 3199 8.543774 CGTTTCTAAAACCATATGACTGATCTC 58.456 37.037 3.65 0.00 0.00 2.75
2604 3200 8.831550 GTTTCTAAAACCATATGACTGATCTCC 58.168 37.037 3.65 0.00 0.00 3.71
2605 3201 6.749139 TCTAAAACCATATGACTGATCTCCG 58.251 40.000 3.65 0.00 0.00 4.63
2606 3202 5.359194 AAAACCATATGACTGATCTCCGT 57.641 39.130 3.65 0.00 0.00 4.69
2607 3203 4.327982 AACCATATGACTGATCTCCGTG 57.672 45.455 3.65 0.00 0.00 4.94
2608 3204 2.036475 ACCATATGACTGATCTCCGTGC 59.964 50.000 3.65 0.00 0.00 5.34
2609 3205 2.036346 CCATATGACTGATCTCCGTGCA 59.964 50.000 3.65 0.00 0.00 4.57
2610 3206 3.315418 CATATGACTGATCTCCGTGCAG 58.685 50.000 0.00 0.00 35.81 4.41
2611 3207 0.463204 ATGACTGATCTCCGTGCAGG 59.537 55.000 0.00 0.00 42.97 4.85
2612 3208 1.520342 GACTGATCTCCGTGCAGGC 60.520 63.158 0.00 0.00 40.77 4.85
2613 3209 2.202987 CTGATCTCCGTGCAGGCC 60.203 66.667 0.00 0.00 40.77 5.19
2614 3210 3.002583 TGATCTCCGTGCAGGCCA 61.003 61.111 5.01 0.00 40.77 5.36
2615 3211 2.268920 GATCTCCGTGCAGGCCAA 59.731 61.111 5.01 0.00 40.77 4.52
2616 3212 1.377202 GATCTCCGTGCAGGCCAAA 60.377 57.895 5.01 0.00 40.77 3.28
2617 3213 1.648467 GATCTCCGTGCAGGCCAAAC 61.648 60.000 5.01 0.00 40.77 2.93
2618 3214 2.129555 ATCTCCGTGCAGGCCAAACT 62.130 55.000 5.01 0.00 40.77 2.66
2619 3215 1.898574 CTCCGTGCAGGCCAAACTT 60.899 57.895 5.01 0.00 40.77 2.66
2620 3216 0.605319 CTCCGTGCAGGCCAAACTTA 60.605 55.000 5.01 0.00 40.77 2.24
2621 3217 0.179015 TCCGTGCAGGCCAAACTTAA 60.179 50.000 5.01 0.00 40.77 1.85
2622 3218 0.039527 CCGTGCAGGCCAAACTTAAC 60.040 55.000 5.01 0.00 0.00 2.01
2623 3219 0.039527 CGTGCAGGCCAAACTTAACC 60.040 55.000 5.01 0.00 0.00 2.85
2624 3220 1.328279 GTGCAGGCCAAACTTAACCT 58.672 50.000 5.01 0.00 0.00 3.50
2625 3221 1.686587 GTGCAGGCCAAACTTAACCTT 59.313 47.619 5.01 0.00 0.00 3.50
2626 3222 2.102420 GTGCAGGCCAAACTTAACCTTT 59.898 45.455 5.01 0.00 0.00 3.11
2627 3223 3.319689 GTGCAGGCCAAACTTAACCTTTA 59.680 43.478 5.01 0.00 0.00 1.85
2628 3224 4.021456 GTGCAGGCCAAACTTAACCTTTAT 60.021 41.667 5.01 0.00 0.00 1.40
2629 3225 5.184287 GTGCAGGCCAAACTTAACCTTTATA 59.816 40.000 5.01 0.00 0.00 0.98
2630 3226 5.775701 TGCAGGCCAAACTTAACCTTTATAA 59.224 36.000 5.01 0.00 0.00 0.98
2631 3227 6.439058 TGCAGGCCAAACTTAACCTTTATAAT 59.561 34.615 5.01 0.00 0.00 1.28
2632 3228 7.616150 TGCAGGCCAAACTTAACCTTTATAATA 59.384 33.333 5.01 0.00 0.00 0.98
2633 3229 8.471609 GCAGGCCAAACTTAACCTTTATAATAA 58.528 33.333 5.01 0.00 0.00 1.40
2635 3231 8.692710 AGGCCAAACTTAACCTTTATAATAAGC 58.307 33.333 5.01 0.00 0.00 3.09
2636 3232 8.692710 GGCCAAACTTAACCTTTATAATAAGCT 58.307 33.333 0.00 0.00 0.00 3.74
2637 3233 9.516314 GCCAAACTTAACCTTTATAATAAGCTG 57.484 33.333 0.00 3.14 0.00 4.24
2654 3250 1.747709 CTGAAAGCACATCAGGAGGG 58.252 55.000 5.73 0.00 40.48 4.30
2655 3251 0.322816 TGAAAGCACATCAGGAGGGC 60.323 55.000 0.00 0.00 0.00 5.19
2656 3252 0.322816 GAAAGCACATCAGGAGGGCA 60.323 55.000 0.00 0.00 0.00 5.36
2657 3253 0.333993 AAAGCACATCAGGAGGGCAT 59.666 50.000 0.00 0.00 0.00 4.40
2658 3254 0.106819 AAGCACATCAGGAGGGCATC 60.107 55.000 0.00 0.00 0.00 3.91
2659 3255 1.225426 GCACATCAGGAGGGCATCA 59.775 57.895 0.08 0.00 0.00 3.07
2660 3256 0.178998 GCACATCAGGAGGGCATCAT 60.179 55.000 0.08 0.00 0.00 2.45
2661 3257 1.605753 CACATCAGGAGGGCATCATG 58.394 55.000 7.58 7.58 41.14 3.07
2665 3261 2.425143 TCAGGAGGGCATCATGAAAC 57.575 50.000 14.52 0.00 45.29 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.803315 GATGTATATAGACATAATTTGCTCCGA 57.197 33.333 12.82 0.00 40.18 4.55
5 6 9.035607 CGGATGTATATAGACATAATTTGCTCC 57.964 37.037 12.82 7.54 40.18 4.70
13 14 9.470399 ACCACATACGGATGTATATAGACATAA 57.530 33.333 14.23 0.77 44.82 1.90
15 16 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
16 17 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
17 18 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
18 19 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
19 20 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
20 21 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
21 22 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
22 23 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
23 24 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
24 25 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
59 60 8.523658 GCCTCAGTTCCTAAATATTTGTCTTTT 58.476 33.333 11.05 0.00 0.00 2.27
60 61 7.669722 TGCCTCAGTTCCTAAATATTTGTCTTT 59.330 33.333 11.05 0.00 0.00 2.52
61 62 7.175104 TGCCTCAGTTCCTAAATATTTGTCTT 58.825 34.615 11.05 0.00 0.00 3.01
62 63 6.721318 TGCCTCAGTTCCTAAATATTTGTCT 58.279 36.000 11.05 0.00 0.00 3.41
63 64 7.573968 ATGCCTCAGTTCCTAAATATTTGTC 57.426 36.000 11.05 0.00 0.00 3.18
64 65 7.229506 GCTATGCCTCAGTTCCTAAATATTTGT 59.770 37.037 11.05 0.00 0.00 2.83
65 66 7.446625 AGCTATGCCTCAGTTCCTAAATATTTG 59.553 37.037 11.05 1.40 0.00 2.32
66 67 7.521669 AGCTATGCCTCAGTTCCTAAATATTT 58.478 34.615 5.89 5.89 0.00 1.40
67 68 7.084268 AGCTATGCCTCAGTTCCTAAATATT 57.916 36.000 0.00 0.00 0.00 1.28
68 69 6.694445 AGCTATGCCTCAGTTCCTAAATAT 57.306 37.500 0.00 0.00 0.00 1.28
69 70 6.500589 AAGCTATGCCTCAGTTCCTAAATA 57.499 37.500 0.00 0.00 0.00 1.40
70 71 5.379706 AAGCTATGCCTCAGTTCCTAAAT 57.620 39.130 0.00 0.00 0.00 1.40
71 72 4.844349 AAGCTATGCCTCAGTTCCTAAA 57.156 40.909 0.00 0.00 0.00 1.85
72 73 4.345257 CCTAAGCTATGCCTCAGTTCCTAA 59.655 45.833 0.00 0.00 0.00 2.69
73 74 3.898123 CCTAAGCTATGCCTCAGTTCCTA 59.102 47.826 0.00 0.00 0.00 2.94
74 75 2.703007 CCTAAGCTATGCCTCAGTTCCT 59.297 50.000 0.00 0.00 0.00 3.36
75 76 2.224402 CCCTAAGCTATGCCTCAGTTCC 60.224 54.545 0.00 0.00 0.00 3.62
76 77 2.436173 ACCCTAAGCTATGCCTCAGTTC 59.564 50.000 0.00 0.00 0.00 3.01
77 78 2.482494 ACCCTAAGCTATGCCTCAGTT 58.518 47.619 0.00 0.00 0.00 3.16
78 79 2.182516 ACCCTAAGCTATGCCTCAGT 57.817 50.000 0.00 0.00 0.00 3.41
79 80 3.006323 CAGTACCCTAAGCTATGCCTCAG 59.994 52.174 0.00 0.00 0.00 3.35
80 81 2.965831 CAGTACCCTAAGCTATGCCTCA 59.034 50.000 0.00 0.00 0.00 3.86
81 82 2.966516 ACAGTACCCTAAGCTATGCCTC 59.033 50.000 0.00 0.00 0.00 4.70
82 83 3.047695 ACAGTACCCTAAGCTATGCCT 57.952 47.619 0.00 0.00 0.00 4.75
83 84 3.134081 TGAACAGTACCCTAAGCTATGCC 59.866 47.826 0.00 0.00 0.00 4.40
91 92 4.017775 TCCTCTAGCTGAACAGTACCCTAA 60.018 45.833 0.00 0.00 0.00 2.69
115 116 4.062293 TCCGATAGTTGTTTGTCCTTGTG 58.938 43.478 0.00 0.00 0.00 3.33
116 117 4.062991 GTCCGATAGTTGTTTGTCCTTGT 58.937 43.478 0.00 0.00 0.00 3.16
117 118 4.062293 TGTCCGATAGTTGTTTGTCCTTG 58.938 43.478 0.00 0.00 0.00 3.61
176 187 2.297937 CTCCAGGTACAAGGGGGAC 58.702 63.158 0.00 0.00 0.00 4.46
191 202 1.449353 CCACCTAGCATGCTCCTCC 59.551 63.158 26.57 0.00 0.00 4.30
226 238 0.179062 ATTCATGCTCTGCCTCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
245 257 1.134401 CCCGCTCAGATTTGGCTTCTA 60.134 52.381 0.00 0.00 0.00 2.10
274 286 2.494059 GCCACTTCTTGCACTAGACAA 58.506 47.619 0.00 0.00 0.00 3.18
280 292 2.980233 GGCGCCACTTCTTGCACT 60.980 61.111 24.80 0.00 0.00 4.40
352 419 2.106938 GGCGCGAGATGACATGGA 59.893 61.111 12.10 0.00 0.00 3.41
384 451 7.468141 TCGCATATTTACCTGTGATAGATCT 57.532 36.000 0.00 0.00 0.00 2.75
430 498 2.978156 ATACATCCCGGCATCCAAAT 57.022 45.000 0.00 0.00 0.00 2.32
439 507 2.224018 CCAATGCCAAAATACATCCCGG 60.224 50.000 0.00 0.00 0.00 5.73
464 540 5.607592 AGAGATCCATGAACAATCTCCATCT 59.392 40.000 16.82 0.00 44.19 2.90
475 558 4.142513 GGCAGAACAAAGAGATCCATGAAC 60.143 45.833 0.00 0.00 0.00 3.18
542 632 6.646653 ACCTGCATGATGACTGTTTATATACG 59.353 38.462 0.00 0.00 0.00 3.06
543 633 7.969536 ACCTGCATGATGACTGTTTATATAC 57.030 36.000 0.00 0.00 0.00 1.47
551 641 4.449131 CATCTTACCTGCATGATGACTGT 58.551 43.478 0.00 0.00 38.72 3.55
608 700 3.083997 CGGACCCCTTCCCAGGAG 61.084 72.222 0.00 0.00 44.19 3.69
642 734 3.402110 TCCAAGCCAGATATAATGTGCG 58.598 45.455 0.00 0.00 0.00 5.34
652 744 5.643421 AATCTGTTCTATCCAAGCCAGAT 57.357 39.130 0.00 0.00 41.53 2.90
690 861 8.485976 ACTACAAAAATTGAGCTCTCTATGAC 57.514 34.615 16.19 0.00 0.00 3.06
696 867 9.952188 AAAACTAACTACAAAAATTGAGCTCTC 57.048 29.630 16.19 0.00 0.00 3.20
793 966 8.211116 TGTACAACTCTTCAAAACGGATAAAA 57.789 30.769 0.00 0.00 0.00 1.52
803 976 9.743057 CATTGGTTAAATGTACAACTCTTCAAA 57.257 29.630 0.00 0.00 40.78 2.69
904 1078 5.360714 TGAAAGTAGGATCGTTATACCGGTT 59.639 40.000 15.04 3.05 0.00 4.44
907 1081 6.309712 TCTGAAAGTAGGATCGTTATACCG 57.690 41.667 0.00 0.00 33.76 4.02
917 1091 7.009179 TGAACTCAACATCTGAAAGTAGGAT 57.991 36.000 0.00 0.00 32.17 3.24
1026 1202 3.604582 GCTTAACTTGCTGATCAGAGGT 58.395 45.455 27.04 16.31 0.00 3.85
1052 1228 2.270047 CCAAAAGCCAAACCATATGCG 58.730 47.619 0.00 0.00 0.00 4.73
1104 1280 7.404481 ACTTAAATACCTTATTCGGTCCCAAA 58.596 34.615 0.00 0.00 38.49 3.28
1178 1354 4.264253 CAGAGTTTTGCCCATCACATCTA 58.736 43.478 0.00 0.00 0.00 1.98
1190 1366 1.936547 CGCTCCTATCCAGAGTTTTGC 59.063 52.381 0.00 0.00 33.69 3.68
1200 1376 4.551388 CAAATACAGTCTCGCTCCTATCC 58.449 47.826 0.00 0.00 0.00 2.59
1224 1400 0.829182 GCCCAAGCATCCCCTTATGG 60.829 60.000 0.00 0.00 39.53 2.74
1225 1401 0.106066 TGCCCAAGCATCCCCTTATG 60.106 55.000 0.00 0.00 46.52 1.90
1227 1403 3.848558 TGCCCAAGCATCCCCTTA 58.151 55.556 0.00 0.00 46.52 2.69
1237 1415 1.425066 TCCCCTTATAGCATGCCCAAG 59.575 52.381 15.66 14.49 0.00 3.61
1243 1421 4.999950 GTGACATCTTCCCCTTATAGCATG 59.000 45.833 0.00 0.00 0.00 4.06
1246 1424 4.689612 TGTGACATCTTCCCCTTATAGC 57.310 45.455 0.00 0.00 0.00 2.97
1287 1518 9.497030 CTATCTAGATACGATGTATGCAGTTTC 57.503 37.037 8.44 0.00 0.00 2.78
1311 1895 6.613271 TGCTTATTTCCCCCAAATTAATGCTA 59.387 34.615 0.00 0.00 36.09 3.49
1367 1951 4.567971 TCTAGTTTTATCCGCCGTGAAAA 58.432 39.130 0.00 0.00 0.00 2.29
1416 2000 8.600449 AATCTCTATTCTTCGTTGAATCCATC 57.400 34.615 8.42 0.00 37.73 3.51
1434 2018 7.523293 TGAACTGCCAAAAATGAAATCTCTA 57.477 32.000 0.00 0.00 0.00 2.43
1435 2019 6.409524 TGAACTGCCAAAAATGAAATCTCT 57.590 33.333 0.00 0.00 0.00 3.10
1454 2038 2.613223 GGGTGGAGACTTACTGCTGAAC 60.613 54.545 0.00 0.00 37.83 3.18
1513 2097 0.589223 CGACGAGTATGCCCTCTCTC 59.411 60.000 0.00 0.00 0.00 3.20
1593 2179 5.933187 TGTTGTTGTGCAATATAGTCGTT 57.067 34.783 0.00 0.00 39.55 3.85
1603 2189 1.411977 CATCCCCTTGTTGTTGTGCAA 59.588 47.619 0.00 0.00 34.16 4.08
1614 2200 2.037687 TGCCCAAGCATCCCCTTG 59.962 61.111 0.00 0.00 46.52 3.61
1842 2430 1.221840 GCCATGGTCACCATCTCGT 59.778 57.895 6.26 0.00 43.15 4.18
1875 2465 3.841255 CCCTTCTTATTAGGGCCTAGAGG 59.159 52.174 13.99 9.61 45.59 3.69
1890 2480 1.679898 CGCTCTGTTCCCCCTTCTT 59.320 57.895 0.00 0.00 0.00 2.52
2001 2594 1.076677 TCCTCCTTACCGAACTCCTGT 59.923 52.381 0.00 0.00 0.00 4.00
2063 2656 2.251818 CCATGAGATCTACGTCCCCAT 58.748 52.381 0.00 0.00 0.00 4.00
2222 2818 1.142748 CCCTCACAGTGCCTCGATC 59.857 63.158 0.00 0.00 0.00 3.69
2235 2831 0.105760 GCTCTCCTCTCCATCCCTCA 60.106 60.000 0.00 0.00 0.00 3.86
2408 3004 1.043816 ATCAATCGGTCCGAGCTCAT 58.956 50.000 20.50 6.08 39.91 2.90
2443 3039 3.755628 TCCTTTCGGACCGGCTCG 61.756 66.667 15.25 5.93 33.30 5.03
2451 3047 2.987547 ACGAGCGGTCCTTTCGGA 60.988 61.111 9.39 0.00 38.58 4.55
2452 3048 2.809601 CACGAGCGGTCCTTTCGG 60.810 66.667 9.39 0.00 38.58 4.30
2453 3049 2.049433 ACACGAGCGGTCCTTTCG 60.049 61.111 9.39 9.55 40.02 3.46
2454 3050 2.087009 CGACACGAGCGGTCCTTTC 61.087 63.158 9.39 1.63 31.55 2.62
2455 3051 2.049433 CGACACGAGCGGTCCTTT 60.049 61.111 9.39 0.00 31.55 3.11
2456 3052 3.264866 GACGACACGAGCGGTCCTT 62.265 63.158 9.39 0.00 31.55 3.36
2457 3053 3.735029 GACGACACGAGCGGTCCT 61.735 66.667 9.39 0.00 31.55 3.85
2458 3054 4.773117 GGACGACACGAGCGGTCC 62.773 72.222 9.39 7.06 31.55 4.46
2459 3055 4.034258 TGGACGACACGAGCGGTC 62.034 66.667 4.06 4.06 0.00 4.79
2460 3056 4.338539 GTGGACGACACGAGCGGT 62.339 66.667 0.00 0.00 40.85 5.68
2468 3064 3.311110 GCCTCAGGGTGGACGACA 61.311 66.667 0.00 0.00 34.45 4.35
2469 3065 2.584391 AAGCCTCAGGGTGGACGAC 61.584 63.158 0.00 0.00 31.90 4.34
2470 3066 2.203788 AAGCCTCAGGGTGGACGA 60.204 61.111 0.00 0.00 31.90 4.20
2471 3067 2.046892 CAAGCCTCAGGGTGGACG 60.047 66.667 0.00 0.00 31.90 4.79
2472 3068 1.003233 GTCAAGCCTCAGGGTGGAC 60.003 63.158 14.91 14.91 45.17 4.02
2473 3069 1.461268 TGTCAAGCCTCAGGGTGGA 60.461 57.895 0.00 0.00 31.90 4.02
2474 3070 1.302832 GTGTCAAGCCTCAGGGTGG 60.303 63.158 0.00 0.00 31.90 4.61
2475 3071 0.037303 ATGTGTCAAGCCTCAGGGTG 59.963 55.000 0.00 0.00 31.90 4.61
2476 3072 0.326264 GATGTGTCAAGCCTCAGGGT 59.674 55.000 0.00 0.00 33.45 4.34
2477 3073 0.325933 TGATGTGTCAAGCCTCAGGG 59.674 55.000 0.00 0.00 0.00 4.45
2478 3074 1.678123 CCTGATGTGTCAAGCCTCAGG 60.678 57.143 2.76 2.76 44.99 3.86
2479 3075 1.002888 ACCTGATGTGTCAAGCCTCAG 59.997 52.381 0.00 0.00 33.05 3.35
2480 3076 1.059098 ACCTGATGTGTCAAGCCTCA 58.941 50.000 0.00 0.00 33.05 3.86
2481 3077 1.002430 TCACCTGATGTGTCAAGCCTC 59.998 52.381 0.00 0.00 45.61 4.70
2482 3078 1.059098 TCACCTGATGTGTCAAGCCT 58.941 50.000 0.00 0.00 45.61 4.58
2483 3079 1.160137 GTCACCTGATGTGTCAAGCC 58.840 55.000 0.00 0.00 45.61 4.35
2484 3080 1.532868 GTGTCACCTGATGTGTCAAGC 59.467 52.381 0.00 0.00 43.09 4.01
2485 3081 3.062763 GAGTGTCACCTGATGTGTCAAG 58.937 50.000 0.00 0.00 43.09 3.02
2486 3082 2.224281 GGAGTGTCACCTGATGTGTCAA 60.224 50.000 0.00 0.00 43.09 3.18
2487 3083 1.344438 GGAGTGTCACCTGATGTGTCA 59.656 52.381 0.00 0.00 45.61 3.58
2488 3084 1.620819 AGGAGTGTCACCTGATGTGTC 59.379 52.381 0.00 0.00 45.61 3.67
2489 3085 1.722034 AGGAGTGTCACCTGATGTGT 58.278 50.000 0.00 0.00 45.61 3.72
2496 3092 2.574955 GCGGTCAGGAGTGTCACCT 61.575 63.158 0.00 0.00 38.40 4.00
2497 3093 2.048127 GCGGTCAGGAGTGTCACC 60.048 66.667 0.00 0.00 0.00 4.02
2498 3094 0.320771 ATTGCGGTCAGGAGTGTCAC 60.321 55.000 0.00 0.00 0.00 3.67
2499 3095 0.320683 CATTGCGGTCAGGAGTGTCA 60.321 55.000 0.00 0.00 0.00 3.58
2500 3096 0.320771 ACATTGCGGTCAGGAGTGTC 60.321 55.000 0.00 0.00 36.46 3.67
2501 3097 0.108585 AACATTGCGGTCAGGAGTGT 59.891 50.000 0.00 0.00 42.50 3.55
2502 3098 0.518636 CAACATTGCGGTCAGGAGTG 59.481 55.000 0.00 0.00 34.20 3.51
2503 3099 0.108585 ACAACATTGCGGTCAGGAGT 59.891 50.000 0.00 0.00 0.00 3.85
2504 3100 1.238439 AACAACATTGCGGTCAGGAG 58.762 50.000 0.00 0.00 0.00 3.69
2505 3101 1.606668 GAAACAACATTGCGGTCAGGA 59.393 47.619 0.00 0.00 0.00 3.86
2506 3102 1.336440 TGAAACAACATTGCGGTCAGG 59.664 47.619 0.00 0.00 0.00 3.86
2507 3103 2.384382 GTGAAACAACATTGCGGTCAG 58.616 47.619 0.00 0.00 36.32 3.51
2508 3104 2.483583 GTGAAACAACATTGCGGTCA 57.516 45.000 0.00 0.00 36.32 4.02
2527 3123 8.061857 ACGTTTCGACAGCACATAATTATTATG 58.938 33.333 19.81 19.81 46.56 1.90
2528 3124 8.138365 ACGTTTCGACAGCACATAATTATTAT 57.862 30.769 0.00 0.00 0.00 1.28
2529 3125 7.275999 TGACGTTTCGACAGCACATAATTATTA 59.724 33.333 0.00 0.00 0.00 0.98
2530 3126 6.091577 TGACGTTTCGACAGCACATAATTATT 59.908 34.615 0.00 0.00 0.00 1.40
2531 3127 5.579119 TGACGTTTCGACAGCACATAATTAT 59.421 36.000 0.00 0.00 0.00 1.28
2532 3128 4.924462 TGACGTTTCGACAGCACATAATTA 59.076 37.500 0.00 0.00 0.00 1.40
2533 3129 3.743911 TGACGTTTCGACAGCACATAATT 59.256 39.130 0.00 0.00 0.00 1.40
2534 3130 3.322369 TGACGTTTCGACAGCACATAAT 58.678 40.909 0.00 0.00 0.00 1.28
2535 3131 2.745102 TGACGTTTCGACAGCACATAA 58.255 42.857 0.00 0.00 0.00 1.90
2536 3132 2.425578 TGACGTTTCGACAGCACATA 57.574 45.000 0.00 0.00 0.00 2.29
2537 3133 1.577468 TTGACGTTTCGACAGCACAT 58.423 45.000 0.00 0.00 33.08 3.21
2538 3134 1.525197 GATTGACGTTTCGACAGCACA 59.475 47.619 0.00 0.00 33.08 4.57
2539 3135 1.136336 GGATTGACGTTTCGACAGCAC 60.136 52.381 0.00 0.00 33.08 4.40
2540 3136 1.144969 GGATTGACGTTTCGACAGCA 58.855 50.000 0.00 0.00 33.08 4.41
2541 3137 1.429463 AGGATTGACGTTTCGACAGC 58.571 50.000 0.00 0.00 33.08 4.40
2542 3138 4.468095 AAAAGGATTGACGTTTCGACAG 57.532 40.909 0.00 0.00 35.88 3.51
2543 3139 5.524646 ACTTAAAAGGATTGACGTTTCGACA 59.475 36.000 0.00 0.00 35.88 4.35
2544 3140 5.844396 CACTTAAAAGGATTGACGTTTCGAC 59.156 40.000 0.00 0.00 35.88 4.20
2545 3141 5.754406 TCACTTAAAAGGATTGACGTTTCGA 59.246 36.000 0.00 0.00 35.88 3.71
2546 3142 5.981174 TCACTTAAAAGGATTGACGTTTCG 58.019 37.500 0.00 0.00 35.88 3.46
2547 3143 7.534239 GTCATCACTTAAAAGGATTGACGTTTC 59.466 37.037 0.00 0.00 35.88 2.78
2548 3144 7.012894 TGTCATCACTTAAAAGGATTGACGTTT 59.987 33.333 0.00 0.00 38.06 3.60
2549 3145 6.485313 TGTCATCACTTAAAAGGATTGACGTT 59.515 34.615 0.00 0.00 0.00 3.99
2550 3146 5.995282 TGTCATCACTTAAAAGGATTGACGT 59.005 36.000 0.00 0.00 0.00 4.34
2551 3147 6.480524 TGTCATCACTTAAAAGGATTGACG 57.519 37.500 12.44 0.00 0.00 4.35
2552 3148 8.116753 CGTATGTCATCACTTAAAAGGATTGAC 58.883 37.037 11.25 11.25 0.00 3.18
2553 3149 7.822334 ACGTATGTCATCACTTAAAAGGATTGA 59.178 33.333 0.00 0.00 0.00 2.57
2554 3150 7.974675 ACGTATGTCATCACTTAAAAGGATTG 58.025 34.615 0.00 0.00 0.00 2.67
2555 3151 8.561738 AACGTATGTCATCACTTAAAAGGATT 57.438 30.769 0.00 0.00 0.00 3.01
2556 3152 8.561738 AAACGTATGTCATCACTTAAAAGGAT 57.438 30.769 0.00 0.00 0.00 3.24
2557 3153 7.876068 AGAAACGTATGTCATCACTTAAAAGGA 59.124 33.333 0.00 0.00 0.00 3.36
2558 3154 8.029642 AGAAACGTATGTCATCACTTAAAAGG 57.970 34.615 0.00 0.00 0.00 3.11
2563 3159 8.928733 GGTTTTAGAAACGTATGTCATCACTTA 58.071 33.333 0.00 0.00 0.00 2.24
2564 3160 7.442969 TGGTTTTAGAAACGTATGTCATCACTT 59.557 33.333 0.00 0.00 0.00 3.16
2565 3161 6.932400 TGGTTTTAGAAACGTATGTCATCACT 59.068 34.615 0.00 0.00 0.00 3.41
2566 3162 7.124347 TGGTTTTAGAAACGTATGTCATCAC 57.876 36.000 0.00 0.00 0.00 3.06
2567 3163 7.915293 ATGGTTTTAGAAACGTATGTCATCA 57.085 32.000 0.00 0.00 0.00 3.07
2568 3164 9.864034 CATATGGTTTTAGAAACGTATGTCATC 57.136 33.333 12.88 0.00 43.10 2.92
2569 3165 9.607988 TCATATGGTTTTAGAAACGTATGTCAT 57.392 29.630 18.05 7.51 45.98 3.06
2570 3166 8.875803 GTCATATGGTTTTAGAAACGTATGTCA 58.124 33.333 18.05 3.03 45.98 3.58
2571 3167 9.095065 AGTCATATGGTTTTAGAAACGTATGTC 57.905 33.333 18.05 14.25 45.98 3.06
2572 3168 8.879759 CAGTCATATGGTTTTAGAAACGTATGT 58.120 33.333 18.05 3.03 45.98 2.29
2573 3169 9.093970 TCAGTCATATGGTTTTAGAAACGTATG 57.906 33.333 14.33 14.33 46.69 2.39
2574 3170 9.832445 ATCAGTCATATGGTTTTAGAAACGTAT 57.168 29.630 2.13 0.00 35.52 3.06
2575 3171 9.309516 GATCAGTCATATGGTTTTAGAAACGTA 57.690 33.333 2.13 0.00 0.00 3.57
2576 3172 8.041323 AGATCAGTCATATGGTTTTAGAAACGT 58.959 33.333 2.13 0.00 0.00 3.99
2577 3173 8.425577 AGATCAGTCATATGGTTTTAGAAACG 57.574 34.615 2.13 0.00 0.00 3.60
2578 3174 8.831550 GGAGATCAGTCATATGGTTTTAGAAAC 58.168 37.037 2.13 0.00 0.00 2.78
2579 3175 7.710907 CGGAGATCAGTCATATGGTTTTAGAAA 59.289 37.037 2.13 0.00 0.00 2.52
2580 3176 7.147724 ACGGAGATCAGTCATATGGTTTTAGAA 60.148 37.037 2.13 0.00 0.00 2.10
2581 3177 6.323996 ACGGAGATCAGTCATATGGTTTTAGA 59.676 38.462 2.13 0.00 0.00 2.10
2582 3178 6.422100 CACGGAGATCAGTCATATGGTTTTAG 59.578 42.308 2.13 0.00 0.00 1.85
2583 3179 6.280643 CACGGAGATCAGTCATATGGTTTTA 58.719 40.000 2.13 0.00 0.00 1.52
2584 3180 5.118990 CACGGAGATCAGTCATATGGTTTT 58.881 41.667 2.13 0.00 0.00 2.43
2585 3181 4.697514 CACGGAGATCAGTCATATGGTTT 58.302 43.478 2.13 0.00 0.00 3.27
2586 3182 3.493350 GCACGGAGATCAGTCATATGGTT 60.493 47.826 2.13 0.00 0.00 3.67
2587 3183 2.036475 GCACGGAGATCAGTCATATGGT 59.964 50.000 2.13 0.00 0.00 3.55
2588 3184 2.036346 TGCACGGAGATCAGTCATATGG 59.964 50.000 2.13 0.00 0.00 2.74
2589 3185 3.315418 CTGCACGGAGATCAGTCATATG 58.685 50.000 0.00 0.00 0.00 1.78
2590 3186 2.298446 CCTGCACGGAGATCAGTCATAT 59.702 50.000 0.00 0.00 33.16 1.78
2591 3187 1.683385 CCTGCACGGAGATCAGTCATA 59.317 52.381 0.00 0.00 33.16 2.15
2592 3188 0.463204 CCTGCACGGAGATCAGTCAT 59.537 55.000 0.00 0.00 33.16 3.06
2593 3189 1.893062 CCTGCACGGAGATCAGTCA 59.107 57.895 0.00 0.00 33.16 3.41
2594 3190 1.520342 GCCTGCACGGAGATCAGTC 60.520 63.158 6.40 0.00 33.16 3.51
2595 3191 2.581354 GCCTGCACGGAGATCAGT 59.419 61.111 6.40 0.00 33.16 3.41
2596 3192 2.202987 GGCCTGCACGGAGATCAG 60.203 66.667 0.00 0.00 33.16 2.90
2597 3193 2.123248 TTTGGCCTGCACGGAGATCA 62.123 55.000 3.32 0.00 33.16 2.92
2598 3194 1.377202 TTTGGCCTGCACGGAGATC 60.377 57.895 3.32 0.00 33.16 2.75
2599 3195 1.675641 GTTTGGCCTGCACGGAGAT 60.676 57.895 3.32 0.00 33.16 2.75
2600 3196 2.281484 GTTTGGCCTGCACGGAGA 60.281 61.111 3.32 0.00 33.16 3.71
2601 3197 0.605319 TAAGTTTGGCCTGCACGGAG 60.605 55.000 3.32 0.00 33.16 4.63
2602 3198 0.179015 TTAAGTTTGGCCTGCACGGA 60.179 50.000 3.32 0.00 33.16 4.69
2603 3199 0.039527 GTTAAGTTTGGCCTGCACGG 60.040 55.000 3.32 0.00 0.00 4.94
2604 3200 0.039527 GGTTAAGTTTGGCCTGCACG 60.040 55.000 3.32 0.00 0.00 5.34
2605 3201 1.328279 AGGTTAAGTTTGGCCTGCAC 58.672 50.000 3.32 0.00 0.00 4.57
2606 3202 2.080654 AAGGTTAAGTTTGGCCTGCA 57.919 45.000 3.32 0.00 0.00 4.41
2607 3203 4.801330 ATAAAGGTTAAGTTTGGCCTGC 57.199 40.909 3.32 0.00 0.00 4.85
2609 3205 8.692710 GCTTATTATAAAGGTTAAGTTTGGCCT 58.307 33.333 3.32 0.00 0.00 5.19
2610 3206 8.692710 AGCTTATTATAAAGGTTAAGTTTGGCC 58.307 33.333 0.00 0.00 33.54 5.36
2611 3207 9.516314 CAGCTTATTATAAAGGTTAAGTTTGGC 57.484 33.333 5.78 0.00 35.08 4.52
2619 3215 9.456147 TGTGCTTTCAGCTTATTATAAAGGTTA 57.544 29.630 0.00 0.00 42.97 2.85
2620 3216 8.348285 TGTGCTTTCAGCTTATTATAAAGGTT 57.652 30.769 0.00 0.00 42.97 3.50
2621 3217 7.938140 TGTGCTTTCAGCTTATTATAAAGGT 57.062 32.000 0.00 0.00 42.97 3.50
2622 3218 8.623903 TGATGTGCTTTCAGCTTATTATAAAGG 58.376 33.333 0.00 0.00 42.97 3.11
2623 3219 9.661187 CTGATGTGCTTTCAGCTTATTATAAAG 57.339 33.333 0.00 0.00 42.97 1.85
2624 3220 8.623903 CCTGATGTGCTTTCAGCTTATTATAAA 58.376 33.333 0.00 0.00 42.97 1.40
2625 3221 7.992608 TCCTGATGTGCTTTCAGCTTATTATAA 59.007 33.333 0.00 0.00 42.97 0.98
2626 3222 7.508687 TCCTGATGTGCTTTCAGCTTATTATA 58.491 34.615 0.00 0.00 42.97 0.98
2627 3223 6.359804 TCCTGATGTGCTTTCAGCTTATTAT 58.640 36.000 0.00 0.00 42.97 1.28
2628 3224 5.744171 TCCTGATGTGCTTTCAGCTTATTA 58.256 37.500 0.00 0.00 42.97 0.98
2629 3225 4.592942 TCCTGATGTGCTTTCAGCTTATT 58.407 39.130 0.00 0.00 42.97 1.40
2630 3226 4.197750 CTCCTGATGTGCTTTCAGCTTAT 58.802 43.478 0.00 0.00 42.97 1.73
2631 3227 3.603532 CTCCTGATGTGCTTTCAGCTTA 58.396 45.455 0.00 0.00 42.97 3.09
2632 3228 2.434428 CTCCTGATGTGCTTTCAGCTT 58.566 47.619 0.00 0.00 42.97 3.74
2633 3229 1.339824 CCTCCTGATGTGCTTTCAGCT 60.340 52.381 0.00 0.00 42.97 4.24
2634 3230 1.093159 CCTCCTGATGTGCTTTCAGC 58.907 55.000 5.83 0.00 42.82 4.26
2635 3231 1.747709 CCCTCCTGATGTGCTTTCAG 58.252 55.000 4.69 4.69 40.25 3.02
2636 3232 0.322816 GCCCTCCTGATGTGCTTTCA 60.323 55.000 0.00 0.00 0.00 2.69
2637 3233 0.322816 TGCCCTCCTGATGTGCTTTC 60.323 55.000 0.00 0.00 0.00 2.62
2638 3234 0.333993 ATGCCCTCCTGATGTGCTTT 59.666 50.000 0.00 0.00 0.00 3.51
2639 3235 0.106819 GATGCCCTCCTGATGTGCTT 60.107 55.000 0.00 0.00 0.00 3.91
2640 3236 1.276859 TGATGCCCTCCTGATGTGCT 61.277 55.000 0.00 0.00 0.00 4.40
2641 3237 0.178998 ATGATGCCCTCCTGATGTGC 60.179 55.000 0.00 0.00 0.00 4.57
2642 3238 1.142262 TCATGATGCCCTCCTGATGTG 59.858 52.381 0.00 0.00 0.00 3.21
2643 3239 1.514983 TCATGATGCCCTCCTGATGT 58.485 50.000 0.00 0.00 0.00 3.06
2644 3240 2.621998 GTTTCATGATGCCCTCCTGATG 59.378 50.000 0.00 0.00 29.93 3.07
2645 3241 2.941480 GTTTCATGATGCCCTCCTGAT 58.059 47.619 0.00 0.00 29.93 2.90
2646 3242 2.425143 GTTTCATGATGCCCTCCTGA 57.575 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.