AutoCloner

Multiple sequence alignment - TraesCS7B01G361200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G361200	chr7B	100.000	2539	0	0	1	2539	623373946	623371408	0.000000e+00	4689.0
1	TraesCS7B01G361200	chr7B	92.680	1571	56	22	1	1519	623486295	623484732	0.000000e+00	2209.0
2	TraesCS7B01G361200	chr7B	91.324	1556	76	24	1	1519	623523798	623522265	0.000000e+00	2071.0
3	TraesCS7B01G361200	chr7B	93.028	1377	83	8	1	1374	623102990	623101624	0.000000e+00	1999.0
4	TraesCS7B01G361200	chr7B	92.066	1399	74	21	3	1398	623538237	623536873	0.000000e+00	1934.0
5	TraesCS7B01G361200	chr7B	90.200	1500	85	20	73	1519	623060225	623058735	0.000000e+00	1899.0
6	TraesCS7B01G361200	chr7B	93.846	1170	56	8	354	1519	623271488	623270331	0.000000e+00	1748.0
7	TraesCS7B01G361200	chr7B	92.696	1150	59	11	1	1148	623540475	623539349	0.000000e+00	1635.0
8	TraesCS7B01G361200	chr7B	92.732	1142	59	10	1	1140	623508687	623507568	0.000000e+00	1628.0
9	TraesCS7B01G361200	chr7B	91.283	1021	55	11	1532	2539	623270278	623269279	0.000000e+00	1362.0
10	TraesCS7B01G361200	chr7B	93.527	757	38	5	1532	2278	623101461	623100706	0.000000e+00	1116.0
11	TraesCS7B01G361200	chr7B	92.773	761	41	8	1532	2278	623522212	623521452	0.000000e+00	1088.0
12	TraesCS7B01G361200	chr7B	92.622	759	44	8	1532	2278	623504335	623503577	0.000000e+00	1081.0
13	TraesCS7B01G361200	chr7B	92.470	757	44	8	1535	2278	623536648	623535892	0.000000e+00	1070.0
14	TraesCS7B01G361200	chr7B	92.267	763	42	7	1532	2278	586929999	586930760	0.000000e+00	1066.0
15	TraesCS7B01G361200	chr7B	92.237	760	42	7	1532	2278	623058682	623057927	0.000000e+00	1061.0
16	TraesCS7B01G361200	chr7B	93.038	632	31	8	1532	2154	623484679	623484052	0.000000e+00	911.0
17	TraesCS7B01G361200	chr7B	88.212	772	48	19	1532	2278	623566379	623565626	0.000000e+00	881.0
18	TraesCS7B01G361200	chr7B	91.161	577	36	9	1	572	623272010	623271444	0.000000e+00	769.0
19	TraesCS7B01G361200	chr7B	92.075	530	32	6	1	528	623506349	623505828	0.000000e+00	737.0
20	TraesCS7B01G361200	chr7B	92.905	296	13	3	1224	1519	586929659	586929946	8.400000e-115	424.0
21	TraesCS7B01G361200	chr7B	91.571	261	22	0	2279	2539	586930722	586930982	6.680000e-96	361.0
22	TraesCS7B01G361200	chr7B	91.473	258	22	0	2282	2539	623473000	623472743	3.110000e-94	355.0
23	TraesCS7B01G361200	chr7B	90.385	260	23	2	2282	2539	623535927	623535668	8.700000e-90	340.0
24	TraesCS7B01G361200	chr7B	90.000	260	24	2	2282	2539	623503612	623503353	4.050000e-88	335.0
25	TraesCS7B01G361200	chr7B	90.000	260	24	1	2282	2539	623521487	623521228	4.050000e-88	335.0
26	TraesCS7B01G361200	chr7B	88.462	260	27	3	2282	2539	623100741	623100483	6.820000e-81	311.0
27	TraesCS7B01G361200	chr7B	90.811	185	15	1	1216	1398	623539120	623538936	1.950000e-61	246.0
28	TraesCS7B01G361200	chr7B	91.613	155	13	0	1365	1519	623538935	623538781	5.500000e-52	215.0
29	TraesCS7B01G361200	chr7B	98.148	108	2	0	1412	1519	623504495	623504388	3.330000e-44	189.0
30	TraesCS7B01G361200	chr7B	98.148	108	2	0	1412	1519	623506998	623506891	3.330000e-44	189.0
31	TraesCS7B01G361200	chr7D	91.722	1051	64	12	472	1519	568236268	568235238	0.000000e+00	1437.0
32	TraesCS7B01G361200	chr7D	91.099	764	49	8	1532	2278	568235185	568234424	0.000000e+00	1016.0
33	TraesCS7B01G361200	chr7D	88.372	258	30	0	2282	2539	568234459	568234202	6.820000e-81	311.0
34	TraesCS7B01G361200	chr1B	79.310	174	22	12	2284	2449	553802608	553802775	2.670000e-20	110.0
35	TraesCS7B01G361200	chr4A	80.870	115	17	5	2343	2455	191794166	191794277	4.500000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G361200	chr7B	623371408	623373946	2538	True	4689.000000	4689	100.000000	1	2539	1	chr7B.!!$R1	2538
1	TraesCS7B01G361200	chr7B	623484052	623486295	2243	True	1560.000000	2209	92.859000	1	2154	2	chr7B.!!$R7	2153
2	TraesCS7B01G361200	chr7B	623057927	623060225	2298	True	1480.000000	1899	91.218500	73	2278	2	chr7B.!!$R4	2205
3	TraesCS7B01G361200	chr7B	623269279	623272010	2731	True	1293.000000	1748	92.096667	1	2539	3	chr7B.!!$R6	2538
4	TraesCS7B01G361200	chr7B	623521228	623523798	2570	True	1164.666667	2071	91.365667	1	2539	3	chr7B.!!$R9	2538
5	TraesCS7B01G361200	chr7B	623100483	623102990	2507	True	1142.000000	1999	91.672333	1	2539	3	chr7B.!!$R5	2538
6	TraesCS7B01G361200	chr7B	623535668	623540475	4807	True	906.666667	1934	91.673500	1	2539	6	chr7B.!!$R10	2538
7	TraesCS7B01G361200	chr7B	623565626	623566379	753	True	881.000000	881	88.212000	1532	2278	1	chr7B.!!$R3	746
8	TraesCS7B01G361200	chr7B	623503353	623508687	5334	True	693.166667	1628	93.954167	1	2539	6	chr7B.!!$R8	2538
9	TraesCS7B01G361200	chr7B	586929659	586930982	1323	False	617.000000	1066	92.247667	1224	2539	3	chr7B.!!$F1	1315
10	TraesCS7B01G361200	chr7D	568234202	568236268	2066	True	921.333333	1437	90.397667	472	2539	3	chr7D.!!$R1	2067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
286	291	2.435372	TTCAGGCCCGCTAAAATCAT	57.565	45.0	0.0	0.0	0.0	2.45	F
1257	3728	0.535335	GGTTCACCGCTCATGACCTA	59.465	55.0	0.0	0.0	0.0	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1525	4483	0.027194	CTGACATCATTCTTGCCGCG	59.973	55.0	0.00	0.00	0.0	6.46	R
2474	5549	0.032267	TGGTGTCATGCGTACGAACA	59.968	50.0	21.65	13.64	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	3.409026	AGGAATAATCGATGGACTGCC	57.591	47.619	0.00	0.00	0.00	4.85
101	102	8.746530	TCGTATCTAGGTTAGTCACAAAGAAAT	58.253	33.333	0.00	0.00	0.00	2.17
214	219	4.537688	TCCCTGATTGAGATCCAAGTTCTT	59.462	41.667	0.00	0.00	38.31	2.52
286	291	2.435372	TTCAGGCCCGCTAAAATCAT	57.565	45.000	0.00	0.00	0.00	2.45
310	315	8.764287	CATTGGTTTCTATTTCTTGTTTTCACC	58.236	33.333	0.00	0.00	0.00	4.02
484	2815	9.730705	GATGGATAGATGGAGATAGAGATAGAG	57.269	40.741	0.00	0.00	0.00	2.43
486	2817	9.464379	TGGATAGATGGAGATAGAGATAGAGAT	57.536	37.037	0.00	0.00	0.00	2.75
599	3068	5.843673	ATCTACATATCCGCTACCATCAG	57.156	43.478	0.00	0.00	0.00	2.90
872	3341	9.921637	AAGTCAGATTTCTCTCACTTAGTTAAG	57.078	33.333	0.00	0.00	39.18	1.85
888	3357	8.594550	ACTTAGTTAAGAGAGTCCAATTAAGCA	58.405	33.333	5.93	0.00	37.08	3.91
914	3383	4.870426	TGATGAGCGAATGGAGTCTAAAAC	59.130	41.667	0.00	0.00	0.00	2.43
915	3384	4.265904	TGAGCGAATGGAGTCTAAAACA	57.734	40.909	0.00	0.00	0.00	2.83
1063	3533	4.276678	TCATTGTGGCTCTTTCTTCTTGTG	59.723	41.667	0.00	0.00	0.00	3.33
1200	3671	2.605338	CCATAGCGCATGTTGCAATACC	60.605	50.000	11.47	0.00	45.36	2.73
1257	3728	0.535335	GGTTCACCGCTCATGACCTA	59.465	55.000	0.00	0.00	0.00	3.08
1347	3818	4.122776	CTCACTGTGCAGGTTGGTATATC	58.877	47.826	2.12	0.00	0.00	1.63
1519	4477	3.633116	ACCCGCGGCAAGTACCTT	61.633	61.111	22.85	0.00	0.00	3.50
1521	4479	2.358247	CCGCGGCAAGTACCTTGT	60.358	61.111	14.67	0.00	42.77	3.16
1522	4480	1.079681	CCGCGGCAAGTACCTTGTA	60.080	57.895	14.67	0.00	42.77	2.41
1524	4482	1.356527	CGCGGCAAGTACCTTGTACC	61.357	60.000	0.00	0.00	42.77	3.34
1525	4483	1.022982	GCGGCAAGTACCTTGTACCC	61.023	60.000	5.92	0.00	42.77	3.69
1526	4484	0.738412	CGGCAAGTACCTTGTACCCG	60.738	60.000	5.92	6.51	42.77	5.28
1527	4485	1.022982	GGCAAGTACCTTGTACCCGC	61.023	60.000	5.92	4.40	42.77	6.13
1529	4487	0.738412	CAAGTACCTTGTACCCGCGG	60.738	60.000	21.04	21.04	36.79	6.46
1530	4488	2.510012	GTACCTTGTACCCGCGGC	60.510	66.667	22.85	7.02	0.00	6.53
1573	4571	3.253230	GCATTTGCTGTGTATTTGACCC	58.747	45.455	0.00	0.00	38.21	4.46
1639	4641	8.341892	TGTTGTTTGCATTGGTATGATAACTA	57.658	30.769	0.00	0.00	33.37	2.24
1807	4813	4.391155	GGTACACCAGATCTCGACTCTAT	58.609	47.826	0.00	0.00	35.64	1.98
1963	4993	5.088068	ACGACTTAAACAAAAACAACCGAC	58.912	37.500	0.00	0.00	0.00	4.79
2035	5069	6.453943	ACAATATGCACACATGTTTAAGCAA	58.546	32.000	13.19	5.94	35.64	3.91
2103	5138	2.543653	GGTGTGCACAAAAGTGGATCAC	60.544	50.000	23.59	3.97	34.10	3.06
2194	5229	3.053849	GAGGTGAGGACGGACTCGC	62.054	68.421	12.13	12.13	45.01	5.03
2270	5344	1.450312	GAACCGTGCTCATCCAGGG	60.450	63.158	0.00	0.00	44.26	4.45
2271	5345	1.899437	GAACCGTGCTCATCCAGGGA	61.899	60.000	7.77	0.00	41.98	4.20
2272	5346	1.488705	AACCGTGCTCATCCAGGGAA	61.489	55.000	7.77	0.00	41.98	3.97
2273	5347	1.274703	ACCGTGCTCATCCAGGGAAT	61.275	55.000	7.77	0.00	41.98	3.01
2274	5348	0.816825	CCGTGCTCATCCAGGGAATG	60.817	60.000	0.00	0.00	41.98	2.67
2275	5349	0.178767	CGTGCTCATCCAGGGAATGA	59.821	55.000	0.00	0.00	0.00	2.57
2276	5350	1.809271	CGTGCTCATCCAGGGAATGAG	60.809	57.143	12.17	12.17	43.32	2.90
2277	5351	1.211457	GTGCTCATCCAGGGAATGAGT	59.789	52.381	16.18	0.00	42.65	3.41
2278	5352	2.435805	GTGCTCATCCAGGGAATGAGTA	59.564	50.000	16.18	11.02	42.65	2.59
2279	5353	2.702478	TGCTCATCCAGGGAATGAGTAG	59.298	50.000	16.18	0.00	42.65	2.57
2280	5354	2.703007	GCTCATCCAGGGAATGAGTAGT	59.297	50.000	16.18	0.00	42.65	2.73
2281	5355	3.494048	GCTCATCCAGGGAATGAGTAGTG	60.494	52.174	16.18	3.45	42.65	2.74
2282	5356	3.963374	CTCATCCAGGGAATGAGTAGTGA	59.037	47.826	9.24	3.07	37.58	3.41
2283	5357	4.361783	TCATCCAGGGAATGAGTAGTGAA	58.638	43.478	0.00	0.00	0.00	3.18
2284	5358	4.162320	TCATCCAGGGAATGAGTAGTGAAC	59.838	45.833	0.00	0.00	0.00	3.18
2285	5359	2.496070	TCCAGGGAATGAGTAGTGAACG	59.504	50.000	0.00	0.00	0.00	3.95
2286	5360	2.418746	CCAGGGAATGAGTAGTGAACGG	60.419	54.545	0.00	0.00	0.00	4.44
2287	5361	2.496070	CAGGGAATGAGTAGTGAACGGA	59.504	50.000	0.00	0.00	0.00	4.69
2288	5362	3.056107	CAGGGAATGAGTAGTGAACGGAA	60.056	47.826	0.00	0.00	0.00	4.30
2289	5363	3.195825	AGGGAATGAGTAGTGAACGGAAG	59.804	47.826	0.00	0.00	0.00	3.46
2301	5375	3.550656	CGGAAGTGAACCGTGCTC	58.449	61.111	0.00	0.00	44.57	4.26
2302	5376	2.372690	CGGAAGTGAACCGTGCTCG	61.373	63.158	0.14	0.14	44.57	5.03
2303	5377	1.300697	GGAAGTGAACCGTGCTCGT	60.301	57.895	7.47	0.00	35.01	4.18
2304	5378	1.282930	GGAAGTGAACCGTGCTCGTC	61.283	60.000	7.47	0.00	35.01	4.20
2305	5379	1.282930	GAAGTGAACCGTGCTCGTCC	61.283	60.000	7.47	0.00	35.01	4.79
2306	5380	2.023414	AAGTGAACCGTGCTCGTCCA	62.023	55.000	7.47	0.00	35.01	4.02
2307	5381	2.022129	GTGAACCGTGCTCGTCCAG	61.022	63.158	7.47	0.00	35.01	3.86
2308	5382	2.432628	GAACCGTGCTCGTCCAGG	60.433	66.667	7.47	0.00	35.01	4.45
2322	5396	1.902508	GTCCAGGGAATGAGTGACAGA	59.097	52.381	0.00	0.00	0.00	3.41
2338	5412	2.550606	GACAGAGTAGGATAGCGGTGAG	59.449	54.545	0.00	0.00	0.00	3.51
2393	5468	4.618920	ACGAAGATCAGTAAGGGTTGTT	57.381	40.909	0.00	0.00	0.00	2.83
2405	5480	3.141767	AGGGTTGTTAAAGTGGAGAGC	57.858	47.619	0.00	0.00	0.00	4.09
2472	5547	0.473755	ATACATTGGCGAGGGCATCA	59.526	50.000	0.00	0.00	42.47	3.07
2474	5549	0.396139	ACATTGGCGAGGGCATCAAT	60.396	50.000	0.00	0.00	42.47	2.57
2488	5564	2.030335	GCATCAATGTTCGTACGCATGA	59.970	45.455	11.24	10.13	0.00	3.07
2490	5566	2.678324	TCAATGTTCGTACGCATGACA	58.322	42.857	11.24	12.48	0.00	3.58
2499	5575	0.389296	TACGCATGACACCACGGAAG	60.389	55.000	0.00	0.00	0.00	3.46
2526	5604	2.358898	GCGGCAGTGGATTGATTAACAT	59.641	45.455	0.00	0.00	0.00	2.71
2530	5608	4.641989	GGCAGTGGATTGATTAACATGACT	59.358	41.667	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	2.705658	TGGCAGTCCATCGATTATTCCT	59.294	45.455	0.00	0.00	37.47	3.36
48	49	8.721478	CCTAATTCGTATATCTCCAACCAATTG	58.279	37.037	0.00	0.00	35.40	2.32
71	72	6.239217	TGTGACTAACCTAGATACGACCTA	57.761	41.667	0.00	0.00	0.00	3.08
286	291	6.975772	CGGTGAAAACAAGAAATAGAAACCAA	59.024	34.615	0.00	0.00	0.00	3.67
310	315	9.326413	ACTCCCTACATATTAAAACTTCAATCG	57.674	33.333	0.00	0.00	0.00	3.34
599	3068	5.807011	GGTGCATCCATTTCTTGTATCAAAC	59.193	40.000	0.00	0.00	35.97	2.93
737	3206	5.992217	GGCTATGGAGTAGTTGATTTCGAAT	59.008	40.000	0.00	0.00	32.72	3.34
758	3227	5.221702	GGATGCAACCCATTAATTATTGGCT	60.222	40.000	17.46	4.98	33.29	4.75
872	3341	7.325660	TCATCAATTGCTTAATTGGACTCTC	57.674	36.000	11.51	0.00	39.84	3.20
888	3357	4.148128	AGACTCCATTCGCTCATCAATT	57.852	40.909	0.00	0.00	0.00	2.32
1083	3553	6.107901	AGGAGGCAGTGATCTATATTGTTC	57.892	41.667	0.00	0.00	0.00	3.18
1200	3671	6.318144	AGTGGATGTCTTTTGCATCTCTTATG	59.682	38.462	5.45	0.00	41.63	1.90
1254	3725	3.055819	TGGCTAGACTGAGCAAAGTTAGG	60.056	47.826	0.00	0.00	44.76	2.69
1257	3728	3.406764	CTTGGCTAGACTGAGCAAAGTT	58.593	45.455	0.00	0.00	45.10	2.66
1347	3818	3.874394	GCGCGTGCAAATATGACG	58.126	55.556	17.66	0.00	42.15	4.35
1519	4477	1.743623	CATTCTTGCCGCGGGTACA	60.744	57.895	29.38	14.20	0.00	2.90
1521	4479	0.813610	CATCATTCTTGCCGCGGGTA	60.814	55.000	29.38	4.22	0.00	3.69
1522	4480	2.114670	CATCATTCTTGCCGCGGGT	61.115	57.895	29.38	0.00	0.00	5.28
1524	4482	1.353103	GACATCATTCTTGCCGCGG	59.647	57.895	24.05	24.05	0.00	6.46
1525	4483	0.027194	CTGACATCATTCTTGCCGCG	59.973	55.000	0.00	0.00	0.00	6.46
1526	4484	1.372582	TCTGACATCATTCTTGCCGC	58.627	50.000	0.00	0.00	0.00	6.53
1527	4485	3.200483	TCATCTGACATCATTCTTGCCG	58.800	45.455	0.00	0.00	0.00	5.69
1529	4487	5.520632	CCATTCATCTGACATCATTCTTGC	58.479	41.667	0.00	0.00	0.00	4.01
1530	4488	5.067283	TGCCATTCATCTGACATCATTCTTG	59.933	40.000	0.00	0.00	0.00	3.02
1958	4988	7.011109	GCTTGTATGTAATCTTAATGTGTCGGT	59.989	37.037	0.00	0.00	0.00	4.69
1959	4989	7.011016	TGCTTGTATGTAATCTTAATGTGTCGG	59.989	37.037	0.00	0.00	0.00	4.79
2035	5069	3.512680	CGGAGTTCTAGCGAGATTTGTT	58.487	45.455	0.00	0.00	0.00	2.83
2091	5126	1.142060	TCCACACGGTGATCCACTTTT	59.858	47.619	16.29	0.00	35.23	2.27
2103	5138	1.219124	CACCATCCTCTCCACACGG	59.781	63.158	0.00	0.00	0.00	4.94
2194	5229	1.858091	GTGTCCCGCTACATGATCAG	58.142	55.000	0.00	0.00	0.00	2.90
2270	5344	4.806330	TCACTTCCGTTCACTACTCATTC	58.194	43.478	0.00	0.00	0.00	2.67
2271	5345	4.866508	TCACTTCCGTTCACTACTCATT	57.133	40.909	0.00	0.00	0.00	2.57
2272	5346	4.557205	GTTCACTTCCGTTCACTACTCAT	58.443	43.478	0.00	0.00	0.00	2.90
2273	5347	3.243636	GGTTCACTTCCGTTCACTACTCA	60.244	47.826	0.00	0.00	0.00	3.41
2274	5348	3.315418	GGTTCACTTCCGTTCACTACTC	58.685	50.000	0.00	0.00	0.00	2.59
2275	5349	2.288030	CGGTTCACTTCCGTTCACTACT	60.288	50.000	0.00	0.00	42.62	2.57
2276	5350	2.056577	CGGTTCACTTCCGTTCACTAC	58.943	52.381	0.00	0.00	42.62	2.73
2277	5351	2.427232	CGGTTCACTTCCGTTCACTA	57.573	50.000	0.00	0.00	42.62	2.74
2278	5352	3.284197	CGGTTCACTTCCGTTCACT	57.716	52.632	0.00	0.00	42.62	3.41
2285	5359	1.282930	GACGAGCACGGTTCACTTCC	61.283	60.000	8.74	0.00	44.46	3.46
2286	5360	1.282930	GGACGAGCACGGTTCACTTC	61.283	60.000	8.74	0.00	44.46	3.01
2287	5361	1.300697	GGACGAGCACGGTTCACTT	60.301	57.895	8.74	0.00	44.46	3.16
2288	5362	2.338984	GGACGAGCACGGTTCACT	59.661	61.111	8.74	0.00	44.46	3.41
2289	5363	2.022129	CTGGACGAGCACGGTTCAC	61.022	63.158	8.74	0.00	44.46	3.18
2290	5364	2.338620	CTGGACGAGCACGGTTCA	59.661	61.111	8.74	2.31	44.46	3.18
2291	5365	2.432628	CCTGGACGAGCACGGTTC	60.433	66.667	8.74	0.00	44.46	3.62
2292	5366	4.003788	CCCTGGACGAGCACGGTT	62.004	66.667	8.74	0.00	44.46	4.44
2293	5367	4.988716	TCCCTGGACGAGCACGGT	62.989	66.667	8.74	0.00	44.46	4.83
2294	5368	3.019003	ATTCCCTGGACGAGCACGG	62.019	63.158	8.74	0.00	44.46	4.94
2295	5369	1.811266	CATTCCCTGGACGAGCACG	60.811	63.158	0.76	0.76	45.75	5.34
2296	5370	0.460987	CTCATTCCCTGGACGAGCAC	60.461	60.000	0.00	0.00	0.00	4.40
2297	5371	0.904865	ACTCATTCCCTGGACGAGCA	60.905	55.000	10.38	0.00	30.97	4.26
2298	5372	0.460987	CACTCATTCCCTGGACGAGC	60.461	60.000	10.38	0.00	30.97	5.03
2299	5373	1.134965	GTCACTCATTCCCTGGACGAG	60.135	57.143	0.00	9.31	32.92	4.18
2300	5374	0.895530	GTCACTCATTCCCTGGACGA	59.104	55.000	0.00	0.00	0.00	4.20
2301	5375	0.608130	TGTCACTCATTCCCTGGACG	59.392	55.000	0.00	0.00	0.00	4.79
2302	5376	1.902508	TCTGTCACTCATTCCCTGGAC	59.097	52.381	0.00	0.00	0.00	4.02
2303	5377	2.182827	CTCTGTCACTCATTCCCTGGA	58.817	52.381	0.00	0.00	0.00	3.86
2304	5378	1.905215	ACTCTGTCACTCATTCCCTGG	59.095	52.381	0.00	0.00	0.00	4.45
2305	5379	3.131933	CCTACTCTGTCACTCATTCCCTG	59.868	52.174	0.00	0.00	0.00	4.45
2306	5380	3.011821	TCCTACTCTGTCACTCATTCCCT	59.988	47.826	0.00	0.00	0.00	4.20
2307	5381	3.366396	TCCTACTCTGTCACTCATTCCC	58.634	50.000	0.00	0.00	0.00	3.97
2308	5382	5.278758	GCTATCCTACTCTGTCACTCATTCC	60.279	48.000	0.00	0.00	0.00	3.01
2322	5396	4.141914	CCTTTTTCTCACCGCTATCCTACT	60.142	45.833	0.00	0.00	0.00	2.57
2338	5412	1.802365	CAATGCCAGCAAGCCTTTTTC	59.198	47.619	0.00	0.00	0.00	2.29
2393	5468	1.210478	GCCATCCAGCTCTCCACTTTA	59.790	52.381	0.00	0.00	0.00	1.85
2450	5525	2.949177	TGCCCTCGCCAATGTATATT	57.051	45.000	0.00	0.00	0.00	1.28
2472	5547	1.730064	GGTGTCATGCGTACGAACATT	59.270	47.619	21.65	0.00	0.00	2.71
2474	5549	0.032267	TGGTGTCATGCGTACGAACA	59.968	50.000	21.65	13.64	0.00	3.18
2512	5590	5.814481	TGACCAGTCATGTTAATCAATCCA	58.186	37.500	0.00	0.00	34.14	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.