Multiple sequence alignment - TraesCS7B01G360000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G360000 chr7B 100.000 2201 0 0 1 2201 622432644 622434844 0.000000e+00 4065
1 TraesCS7B01G360000 chr7B 99.259 1214 8 1 1 1214 663094100 663095312 0.000000e+00 2191
2 TraesCS7B01G360000 chr7B 100.000 390 0 0 1215 1604 663102114 663101725 0.000000e+00 721
3 TraesCS7B01G360000 chr7B 99.744 390 1 0 1215 1604 662723715 662724104 0.000000e+00 715
4 TraesCS7B01G360000 chr7B 98.592 71 1 0 2131 2201 105101533 105101463 2.290000e-25 126
5 TraesCS7B01G360000 chr3A 99.588 1214 5 0 1 1214 66000154 66001367 0.000000e+00 2215
6 TraesCS7B01G360000 chr3A 100.000 388 0 0 1215 1602 593311999 593312386 0.000000e+00 717
7 TraesCS7B01G360000 chr3A 99.744 390 1 0 1215 1604 66007821 66007432 0.000000e+00 715
8 TraesCS7B01G360000 chr3B 99.506 1214 6 0 1 1214 201569461 201570674 0.000000e+00 2209
9 TraesCS7B01G360000 chr2A 99.506 1214 6 0 1 1214 726901129 726902342 0.000000e+00 2209
10 TraesCS7B01G360000 chr1D 99.341 1214 8 0 1 1214 254530932 254529719 0.000000e+00 2198
11 TraesCS7B01G360000 chr1D 99.053 528 3 2 1604 2130 254436118 254435592 0.000000e+00 946
12 TraesCS7B01G360000 chr3D 99.259 1214 9 0 1 1214 589258202 589259415 0.000000e+00 2193
13 TraesCS7B01G360000 chr3D 100.000 390 0 0 1215 1604 589266212 589265823 0.000000e+00 721
14 TraesCS7B01G360000 chr2D 99.259 1214 8 1 1 1214 591990998 591989786 0.000000e+00 2191
15 TraesCS7B01G360000 chr2D 99.242 528 3 1 1604 2130 638425590 638425063 0.000000e+00 952
16 TraesCS7B01G360000 chr7A 99.012 1214 12 0 1 1214 258305488 258306701 0.000000e+00 2176
17 TraesCS7B01G360000 chr5D 99.012 1214 12 0 1 1214 503250596 503249383 0.000000e+00 2176
18 TraesCS7B01G360000 chr5D 99.621 528 1 1 1604 2130 503292956 503292429 0.000000e+00 963
19 TraesCS7B01G360000 chr5D 99.621 528 1 1 1604 2130 512411271 512410744 0.000000e+00 963
20 TraesCS7B01G360000 chr5D 99.621 528 1 1 1604 2130 512418208 512417681 0.000000e+00 963
21 TraesCS7B01G360000 chr5D 99.242 528 3 1 1604 2130 6175831 6176358 0.000000e+00 952
22 TraesCS7B01G360000 chr5D 99.744 390 1 0 1215 1604 503228559 503228948 0.000000e+00 715
23 TraesCS7B01G360000 chr5D 99.744 390 1 0 1215 1604 503242586 503242975 0.000000e+00 715
24 TraesCS7B01G360000 chr1B 98.482 527 8 0 1604 2130 633708777 633708251 0.000000e+00 929
25 TraesCS7B01G360000 chr1B 97.297 74 2 0 2128 2201 247169362 247169435 2.290000e-25 126
26 TraesCS7B01G360000 chr1B 98.592 71 1 0 2131 2201 446351682 446351612 2.290000e-25 126
27 TraesCS7B01G360000 chr4B 97.727 528 11 1 1604 2130 308678682 308679209 0.000000e+00 907
28 TraesCS7B01G360000 chr4B 97.297 74 2 0 2128 2201 76853064 76852991 2.290000e-25 126
29 TraesCS7B01G360000 chr4B 97.297 74 2 0 2128 2201 573945498 573945571 2.290000e-25 126
30 TraesCS7B01G360000 chr4A 97.348 528 13 1 1604 2130 309488717 309489244 0.000000e+00 896
31 TraesCS7B01G360000 chr6D 99.744 390 1 0 1215 1604 389254480 389254869 0.000000e+00 715
32 TraesCS7B01G360000 chr6D 97.297 74 2 0 2128 2201 1064624 1064697 2.290000e-25 126
33 TraesCS7B01G360000 chrUn 99.487 390 2 0 1215 1604 398829104 398829493 0.000000e+00 710
34 TraesCS7B01G360000 chr6B 98.592 71 1 0 2131 2201 243648191 243648121 2.290000e-25 126
35 TraesCS7B01G360000 chr2B 97.297 74 2 0 2128 2201 337730800 337730873 2.290000e-25 126
36 TraesCS7B01G360000 chr2B 98.592 71 1 0 2131 2201 428209744 428209674 2.290000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G360000 chr7B 622432644 622434844 2200 False 4065 4065 100.000 1 2201 1 chr7B.!!$F1 2200
1 TraesCS7B01G360000 chr7B 663094100 663095312 1212 False 2191 2191 99.259 1 1214 1 chr7B.!!$F3 1213
2 TraesCS7B01G360000 chr3A 66000154 66001367 1213 False 2215 2215 99.588 1 1214 1 chr3A.!!$F1 1213
3 TraesCS7B01G360000 chr3B 201569461 201570674 1213 False 2209 2209 99.506 1 1214 1 chr3B.!!$F1 1213
4 TraesCS7B01G360000 chr2A 726901129 726902342 1213 False 2209 2209 99.506 1 1214 1 chr2A.!!$F1 1213
5 TraesCS7B01G360000 chr1D 254529719 254530932 1213 True 2198 2198 99.341 1 1214 1 chr1D.!!$R2 1213
6 TraesCS7B01G360000 chr1D 254435592 254436118 526 True 946 946 99.053 1604 2130 1 chr1D.!!$R1 526
7 TraesCS7B01G360000 chr3D 589258202 589259415 1213 False 2193 2193 99.259 1 1214 1 chr3D.!!$F1 1213
8 TraesCS7B01G360000 chr2D 591989786 591990998 1212 True 2191 2191 99.259 1 1214 1 chr2D.!!$R1 1213
9 TraesCS7B01G360000 chr2D 638425063 638425590 527 True 952 952 99.242 1604 2130 1 chr2D.!!$R2 526
10 TraesCS7B01G360000 chr7A 258305488 258306701 1213 False 2176 2176 99.012 1 1214 1 chr7A.!!$F1 1213
11 TraesCS7B01G360000 chr5D 503249383 503250596 1213 True 2176 2176 99.012 1 1214 1 chr5D.!!$R1 1213
12 TraesCS7B01G360000 chr5D 503292429 503292956 527 True 963 963 99.621 1604 2130 1 chr5D.!!$R2 526
13 TraesCS7B01G360000 chr5D 512410744 512411271 527 True 963 963 99.621 1604 2130 1 chr5D.!!$R3 526
14 TraesCS7B01G360000 chr5D 512417681 512418208 527 True 963 963 99.621 1604 2130 1 chr5D.!!$R4 526
15 TraesCS7B01G360000 chr5D 6175831 6176358 527 False 952 952 99.242 1604 2130 1 chr5D.!!$F1 526
16 TraesCS7B01G360000 chr1B 633708251 633708777 526 True 929 929 98.482 1604 2130 1 chr1B.!!$R2 526
17 TraesCS7B01G360000 chr4B 308678682 308679209 527 False 907 907 97.727 1604 2130 1 chr4B.!!$F1 526
18 TraesCS7B01G360000 chr4A 309488717 309489244 527 False 896 896 97.348 1604 2130 1 chr4A.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 885 3.897325 GGAACAAGGTTCAAATCGTTCC 58.103 45.455 10.86 0.0 43.87 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 2141 0.1792 CGTATTCGGTGGCTTTGCAC 60.179 55.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
884 885 3.897325 GGAACAAGGTTCAAATCGTTCC 58.103 45.455 10.86 0.00 43.87 3.62
1214 1215 3.011032 TCGTACTAGGGAAAGGTCCTCTT 59.989 47.826 0.00 0.00 44.28 2.85
1215 1216 4.228210 TCGTACTAGGGAAAGGTCCTCTTA 59.772 45.833 0.00 0.00 44.28 2.10
1216 1217 5.103771 TCGTACTAGGGAAAGGTCCTCTTAT 60.104 44.000 0.00 0.00 44.28 1.73
1217 1218 6.101734 TCGTACTAGGGAAAGGTCCTCTTATA 59.898 42.308 0.00 0.00 44.28 0.98
1218 1219 6.774656 CGTACTAGGGAAAGGTCCTCTTATAA 59.225 42.308 0.00 0.00 44.28 0.98
1219 1220 7.255416 CGTACTAGGGAAAGGTCCTCTTATAAC 60.255 44.444 0.00 0.00 44.28 1.89
1220 1221 6.754178 ACTAGGGAAAGGTCCTCTTATAACT 58.246 40.000 0.00 0.00 44.28 2.24
1221 1222 6.840181 ACTAGGGAAAGGTCCTCTTATAACTC 59.160 42.308 0.00 0.00 44.28 3.01
1222 1223 5.600749 AGGGAAAGGTCCTCTTATAACTCA 58.399 41.667 0.00 0.00 44.28 3.41
1223 1224 5.663556 AGGGAAAGGTCCTCTTATAACTCAG 59.336 44.000 0.00 0.00 44.28 3.35
1224 1225 5.361427 GGAAAGGTCCTCTTATAACTCAGC 58.639 45.833 0.00 0.00 41.24 4.26
1225 1226 4.657436 AAGGTCCTCTTATAACTCAGCG 57.343 45.455 0.00 0.00 33.14 5.18
1226 1227 2.959707 AGGTCCTCTTATAACTCAGCGG 59.040 50.000 0.00 0.00 0.00 5.52
1227 1228 2.694109 GGTCCTCTTATAACTCAGCGGT 59.306 50.000 0.00 0.00 0.00 5.68
1228 1229 3.887716 GGTCCTCTTATAACTCAGCGGTA 59.112 47.826 0.00 0.00 0.00 4.02
1229 1230 4.023021 GGTCCTCTTATAACTCAGCGGTAG 60.023 50.000 0.00 0.00 0.00 3.18
1230 1231 4.820716 GTCCTCTTATAACTCAGCGGTAGA 59.179 45.833 0.00 0.00 0.00 2.59
1231 1232 5.049267 GTCCTCTTATAACTCAGCGGTAGAG 60.049 48.000 11.00 11.00 39.04 2.43
1233 1234 5.278071 CCTCTTATAACTCAGCGGTAGAGTG 60.278 48.000 16.61 7.43 45.11 3.51
1234 1235 5.191426 TCTTATAACTCAGCGGTAGAGTGT 58.809 41.667 16.61 12.33 45.11 3.55
1235 1236 5.296283 TCTTATAACTCAGCGGTAGAGTGTC 59.704 44.000 16.61 0.00 45.11 3.67
1236 1237 1.617322 AACTCAGCGGTAGAGTGTCA 58.383 50.000 16.61 0.00 45.11 3.58
1237 1238 0.882474 ACTCAGCGGTAGAGTGTCAC 59.118 55.000 15.61 0.00 44.23 3.67
1238 1239 0.171455 CTCAGCGGTAGAGTGTCACC 59.829 60.000 0.00 0.00 0.00 4.02
1239 1240 0.251209 TCAGCGGTAGAGTGTCACCT 60.251 55.000 0.00 0.00 32.29 4.00
1240 1241 0.603569 CAGCGGTAGAGTGTCACCTT 59.396 55.000 0.00 0.00 32.29 3.50
1241 1242 0.603569 AGCGGTAGAGTGTCACCTTG 59.396 55.000 0.00 0.00 32.29 3.61
1242 1243 0.601558 GCGGTAGAGTGTCACCTTGA 59.398 55.000 0.00 0.00 32.29 3.02
1254 1255 2.218066 ACCTTGACGTGGTGGAAGT 58.782 52.632 0.00 0.00 36.30 3.01
1255 1256 0.106149 ACCTTGACGTGGTGGAAGTC 59.894 55.000 0.00 0.00 36.30 3.01
1256 1257 0.105964 CCTTGACGTGGTGGAAGTCA 59.894 55.000 0.00 0.00 40.79 3.41
1257 1258 1.270839 CCTTGACGTGGTGGAAGTCAT 60.271 52.381 0.00 0.00 41.88 3.06
1258 1259 2.069273 CTTGACGTGGTGGAAGTCATC 58.931 52.381 0.00 0.00 41.88 2.92
1259 1260 1.044611 TGACGTGGTGGAAGTCATCA 58.955 50.000 0.00 0.00 38.05 3.07
1260 1261 1.000843 TGACGTGGTGGAAGTCATCAG 59.999 52.381 0.00 0.00 38.05 2.90
1261 1262 1.000955 GACGTGGTGGAAGTCATCAGT 59.999 52.381 0.00 0.00 37.13 3.41
1262 1263 1.416401 ACGTGGTGGAAGTCATCAGTT 59.584 47.619 0.00 0.00 37.13 3.16
1263 1264 2.069273 CGTGGTGGAAGTCATCAGTTC 58.931 52.381 0.00 0.00 37.13 3.01
1264 1265 2.069273 GTGGTGGAAGTCATCAGTTCG 58.931 52.381 0.00 0.00 37.13 3.95
1265 1266 1.967779 TGGTGGAAGTCATCAGTTCGA 59.032 47.619 0.00 0.00 33.22 3.71
1266 1267 2.029020 TGGTGGAAGTCATCAGTTCGAG 60.029 50.000 0.00 0.00 33.22 4.04
1267 1268 1.996191 GTGGAAGTCATCAGTTCGAGC 59.004 52.381 0.00 0.00 33.22 5.03
1268 1269 1.066858 TGGAAGTCATCAGTTCGAGCC 60.067 52.381 0.00 0.00 33.22 4.70
1269 1270 1.205893 GGAAGTCATCAGTTCGAGCCT 59.794 52.381 0.00 0.00 33.22 4.58
1270 1271 2.266554 GAAGTCATCAGTTCGAGCCTG 58.733 52.381 7.63 7.63 0.00 4.85
1271 1272 1.550327 AGTCATCAGTTCGAGCCTGA 58.450 50.000 16.31 16.31 42.74 3.86
1273 1274 2.499289 AGTCATCAGTTCGAGCCTGATT 59.501 45.455 20.77 9.34 45.12 2.57
1274 1275 3.701542 AGTCATCAGTTCGAGCCTGATTA 59.298 43.478 20.77 13.85 45.12 1.75
1275 1276 4.343526 AGTCATCAGTTCGAGCCTGATTAT 59.656 41.667 20.77 11.02 45.12 1.28
1276 1277 4.683781 GTCATCAGTTCGAGCCTGATTATC 59.316 45.833 20.77 13.09 45.12 1.75
1277 1278 3.735237 TCAGTTCGAGCCTGATTATCC 57.265 47.619 11.56 0.00 34.12 2.59
1278 1279 2.365617 TCAGTTCGAGCCTGATTATCCC 59.634 50.000 11.56 0.00 34.12 3.85
1279 1280 2.366916 CAGTTCGAGCCTGATTATCCCT 59.633 50.000 8.12 0.00 31.38 4.20
1280 1281 3.574396 CAGTTCGAGCCTGATTATCCCTA 59.426 47.826 8.12 0.00 31.38 3.53
1281 1282 4.039245 CAGTTCGAGCCTGATTATCCCTAA 59.961 45.833 8.12 0.00 31.38 2.69
1282 1283 4.654262 AGTTCGAGCCTGATTATCCCTAAA 59.346 41.667 0.00 0.00 0.00 1.85
1283 1284 4.602340 TCGAGCCTGATTATCCCTAAAC 57.398 45.455 0.00 0.00 0.00 2.01
1284 1285 3.323979 TCGAGCCTGATTATCCCTAAACC 59.676 47.826 0.00 0.00 0.00 3.27
1285 1286 3.557264 CGAGCCTGATTATCCCTAAACCC 60.557 52.174 0.00 0.00 0.00 4.11
1286 1287 3.394606 GAGCCTGATTATCCCTAAACCCA 59.605 47.826 0.00 0.00 0.00 4.51
1287 1288 3.791545 AGCCTGATTATCCCTAAACCCAA 59.208 43.478 0.00 0.00 0.00 4.12
1288 1289 4.420214 AGCCTGATTATCCCTAAACCCAAT 59.580 41.667 0.00 0.00 0.00 3.16
1289 1290 4.524328 GCCTGATTATCCCTAAACCCAATG 59.476 45.833 0.00 0.00 0.00 2.82
1290 1291 5.705400 CCTGATTATCCCTAAACCCAATGT 58.295 41.667 0.00 0.00 0.00 2.71
1291 1292 5.536161 CCTGATTATCCCTAAACCCAATGTG 59.464 44.000 0.00 0.00 0.00 3.21
1292 1293 6.334378 TGATTATCCCTAAACCCAATGTGA 57.666 37.500 0.00 0.00 0.00 3.58
1293 1294 6.364701 TGATTATCCCTAAACCCAATGTGAG 58.635 40.000 0.00 0.00 0.00 3.51
1294 1295 5.789574 TTATCCCTAAACCCAATGTGAGT 57.210 39.130 0.00 0.00 0.00 3.41
1295 1296 4.675063 ATCCCTAAACCCAATGTGAGTT 57.325 40.909 0.00 0.00 0.00 3.01
1296 1297 4.463050 TCCCTAAACCCAATGTGAGTTT 57.537 40.909 0.00 0.00 37.47 2.66
1297 1298 4.810345 TCCCTAAACCCAATGTGAGTTTT 58.190 39.130 0.00 0.00 35.45 2.43
1298 1299 5.212745 TCCCTAAACCCAATGTGAGTTTTT 58.787 37.500 0.00 0.00 35.45 1.94
1319 1320 7.770366 TTTTTCTATTTTGACTTACTCCCCC 57.230 36.000 0.00 0.00 0.00 5.40
1320 1321 4.748277 TCTATTTTGACTTACTCCCCCG 57.252 45.455 0.00 0.00 0.00 5.73
1321 1322 2.124277 ATTTTGACTTACTCCCCCGC 57.876 50.000 0.00 0.00 0.00 6.13
1322 1323 0.037160 TTTTGACTTACTCCCCCGCC 59.963 55.000 0.00 0.00 0.00 6.13
1323 1324 1.128809 TTTGACTTACTCCCCCGCCA 61.129 55.000 0.00 0.00 0.00 5.69
1324 1325 1.833787 TTGACTTACTCCCCCGCCAC 61.834 60.000 0.00 0.00 0.00 5.01
1325 1326 3.366739 GACTTACTCCCCCGCCACG 62.367 68.421 0.00 0.00 0.00 4.94
1326 1327 3.072468 CTTACTCCCCCGCCACGA 61.072 66.667 0.00 0.00 0.00 4.35
1327 1328 3.072468 TTACTCCCCCGCCACGAG 61.072 66.667 0.00 0.00 0.00 4.18
1338 1339 2.125673 CCACGAGCGAACGGGAAT 60.126 61.111 5.56 0.00 39.16 3.01
1339 1340 2.452813 CCACGAGCGAACGGGAATG 61.453 63.158 5.56 0.00 39.16 2.67
1340 1341 2.125673 ACGAGCGAACGGGAATGG 60.126 61.111 0.00 0.00 37.61 3.16
1341 1342 2.183300 CGAGCGAACGGGAATGGA 59.817 61.111 0.00 0.00 0.00 3.41
1342 1343 1.227263 CGAGCGAACGGGAATGGAT 60.227 57.895 0.00 0.00 0.00 3.41
1343 1344 0.031585 CGAGCGAACGGGAATGGATA 59.968 55.000 0.00 0.00 0.00 2.59
1344 1345 1.537348 CGAGCGAACGGGAATGGATAA 60.537 52.381 0.00 0.00 0.00 1.75
1345 1346 2.135933 GAGCGAACGGGAATGGATAAG 58.864 52.381 0.00 0.00 0.00 1.73
1346 1347 1.760613 AGCGAACGGGAATGGATAAGA 59.239 47.619 0.00 0.00 0.00 2.10
1347 1348 2.135933 GCGAACGGGAATGGATAAGAG 58.864 52.381 0.00 0.00 0.00 2.85
1348 1349 2.755650 CGAACGGGAATGGATAAGAGG 58.244 52.381 0.00 0.00 0.00 3.69
1349 1350 2.495084 GAACGGGAATGGATAAGAGGC 58.505 52.381 0.00 0.00 0.00 4.70
1350 1351 1.807814 ACGGGAATGGATAAGAGGCT 58.192 50.000 0.00 0.00 0.00 4.58
1351 1352 2.127708 ACGGGAATGGATAAGAGGCTT 58.872 47.619 0.00 0.00 0.00 4.35
1352 1353 2.158755 ACGGGAATGGATAAGAGGCTTG 60.159 50.000 0.00 0.00 0.00 4.01
1353 1354 2.158755 CGGGAATGGATAAGAGGCTTGT 60.159 50.000 0.00 0.00 0.00 3.16
1354 1355 3.217626 GGGAATGGATAAGAGGCTTGTG 58.782 50.000 0.00 0.00 0.00 3.33
1355 1356 3.217626 GGAATGGATAAGAGGCTTGTGG 58.782 50.000 0.00 0.00 0.00 4.17
1356 1357 3.217626 GAATGGATAAGAGGCTTGTGGG 58.782 50.000 0.00 0.00 0.00 4.61
1357 1358 1.965414 TGGATAAGAGGCTTGTGGGA 58.035 50.000 0.00 0.00 0.00 4.37
1358 1359 2.492025 TGGATAAGAGGCTTGTGGGAT 58.508 47.619 0.00 0.00 0.00 3.85
1359 1360 2.852449 TGGATAAGAGGCTTGTGGGATT 59.148 45.455 0.00 0.00 0.00 3.01
1360 1361 3.217626 GGATAAGAGGCTTGTGGGATTG 58.782 50.000 0.00 0.00 0.00 2.67
1361 1362 3.117888 GGATAAGAGGCTTGTGGGATTGA 60.118 47.826 0.00 0.00 0.00 2.57
1362 1363 2.206576 AAGAGGCTTGTGGGATTGAC 57.793 50.000 0.00 0.00 0.00 3.18
1363 1364 0.036010 AGAGGCTTGTGGGATTGACG 60.036 55.000 0.00 0.00 0.00 4.35
1364 1365 0.321653 GAGGCTTGTGGGATTGACGT 60.322 55.000 0.00 0.00 0.00 4.34
1365 1366 0.606401 AGGCTTGTGGGATTGACGTG 60.606 55.000 0.00 0.00 0.00 4.49
1366 1367 0.605319 GGCTTGTGGGATTGACGTGA 60.605 55.000 0.00 0.00 0.00 4.35
1367 1368 1.453155 GCTTGTGGGATTGACGTGAT 58.547 50.000 0.00 0.00 0.00 3.06
1368 1369 2.627945 GCTTGTGGGATTGACGTGATA 58.372 47.619 0.00 0.00 0.00 2.15
1369 1370 2.609459 GCTTGTGGGATTGACGTGATAG 59.391 50.000 0.00 0.00 0.00 2.08
1370 1371 2.979814 TGTGGGATTGACGTGATAGG 57.020 50.000 0.00 0.00 0.00 2.57
1371 1372 1.484653 TGTGGGATTGACGTGATAGGG 59.515 52.381 0.00 0.00 0.00 3.53
1372 1373 1.485066 GTGGGATTGACGTGATAGGGT 59.515 52.381 0.00 0.00 0.00 4.34
1373 1374 2.696707 GTGGGATTGACGTGATAGGGTA 59.303 50.000 0.00 0.00 0.00 3.69
1374 1375 2.963101 TGGGATTGACGTGATAGGGTAG 59.037 50.000 0.00 0.00 0.00 3.18
1375 1376 2.299297 GGGATTGACGTGATAGGGTAGG 59.701 54.545 0.00 0.00 0.00 3.18
1376 1377 2.299297 GGATTGACGTGATAGGGTAGGG 59.701 54.545 0.00 0.00 0.00 3.53
1377 1378 2.537633 TTGACGTGATAGGGTAGGGT 57.462 50.000 0.00 0.00 0.00 4.34
1378 1379 2.537633 TGACGTGATAGGGTAGGGTT 57.462 50.000 0.00 0.00 0.00 4.11
1379 1380 2.104967 TGACGTGATAGGGTAGGGTTG 58.895 52.381 0.00 0.00 0.00 3.77
1380 1381 1.411612 GACGTGATAGGGTAGGGTTGG 59.588 57.143 0.00 0.00 0.00 3.77
1381 1382 0.106149 CGTGATAGGGTAGGGTTGGC 59.894 60.000 0.00 0.00 0.00 4.52
1382 1383 1.508256 GTGATAGGGTAGGGTTGGCT 58.492 55.000 0.00 0.00 0.00 4.75
1383 1384 2.686119 GTGATAGGGTAGGGTTGGCTA 58.314 52.381 0.00 0.00 0.00 3.93
1384 1385 3.248888 GTGATAGGGTAGGGTTGGCTAT 58.751 50.000 0.00 0.00 0.00 2.97
1385 1386 4.422984 GTGATAGGGTAGGGTTGGCTATA 58.577 47.826 0.00 0.00 0.00 1.31
1386 1387 4.222366 GTGATAGGGTAGGGTTGGCTATAC 59.778 50.000 0.00 0.00 0.00 1.47
1387 1388 4.109106 TGATAGGGTAGGGTTGGCTATACT 59.891 45.833 0.00 0.00 0.00 2.12
1388 1389 2.690840 AGGGTAGGGTTGGCTATACTG 58.309 52.381 0.00 0.00 0.00 2.74
1389 1390 1.071857 GGGTAGGGTTGGCTATACTGC 59.928 57.143 0.00 0.00 0.00 4.40
1390 1391 2.047830 GGTAGGGTTGGCTATACTGCT 58.952 52.381 0.00 0.00 0.00 4.24
1391 1392 2.224305 GGTAGGGTTGGCTATACTGCTG 60.224 54.545 0.00 0.00 0.00 4.41
1392 1393 0.839946 AGGGTTGGCTATACTGCTGG 59.160 55.000 0.00 0.00 0.00 4.85
1393 1394 0.546598 GGGTTGGCTATACTGCTGGT 59.453 55.000 0.00 0.00 0.00 4.00
1394 1395 1.668419 GGTTGGCTATACTGCTGGTG 58.332 55.000 0.00 0.00 0.00 4.17
1395 1396 1.668419 GTTGGCTATACTGCTGGTGG 58.332 55.000 0.00 0.00 0.00 4.61
1396 1397 0.107214 TTGGCTATACTGCTGGTGGC 60.107 55.000 0.00 0.00 42.22 5.01
1397 1398 1.595382 GGCTATACTGCTGGTGGCG 60.595 63.158 0.00 0.00 45.43 5.69
1398 1399 1.441729 GCTATACTGCTGGTGGCGA 59.558 57.895 0.00 0.00 45.43 5.54
1399 1400 0.179084 GCTATACTGCTGGTGGCGAA 60.179 55.000 0.00 0.00 45.43 4.70
1400 1401 1.571919 CTATACTGCTGGTGGCGAAC 58.428 55.000 0.00 0.00 45.43 3.95
1401 1402 1.137086 CTATACTGCTGGTGGCGAACT 59.863 52.381 0.00 0.00 45.43 3.01
1402 1403 0.108138 ATACTGCTGGTGGCGAACTC 60.108 55.000 0.00 0.00 45.43 3.01
1403 1404 2.167398 TACTGCTGGTGGCGAACTCC 62.167 60.000 0.00 0.00 45.43 3.85
1404 1405 3.535629 CTGCTGGTGGCGAACTCCA 62.536 63.158 0.00 0.00 45.43 3.86
1407 1408 4.329545 TGGTGGCGAACTCCAGGC 62.330 66.667 0.00 0.00 37.80 4.85
1408 1409 4.021925 GGTGGCGAACTCCAGGCT 62.022 66.667 0.00 0.00 36.67 4.58
1409 1410 2.656069 GGTGGCGAACTCCAGGCTA 61.656 63.158 0.00 0.00 36.67 3.93
1410 1411 1.295423 GTGGCGAACTCCAGGCTAA 59.705 57.895 0.00 0.00 36.67 3.09
1411 1412 0.107654 GTGGCGAACTCCAGGCTAAT 60.108 55.000 0.00 0.00 36.67 1.73
1412 1413 1.138266 GTGGCGAACTCCAGGCTAATA 59.862 52.381 0.00 0.00 36.67 0.98
1413 1414 1.834896 TGGCGAACTCCAGGCTAATAA 59.165 47.619 0.00 0.00 0.00 1.40
1414 1415 2.438021 TGGCGAACTCCAGGCTAATAAT 59.562 45.455 0.00 0.00 0.00 1.28
1415 1416 3.067833 GGCGAACTCCAGGCTAATAATC 58.932 50.000 0.00 0.00 0.00 1.75
1416 1417 3.244249 GGCGAACTCCAGGCTAATAATCT 60.244 47.826 0.00 0.00 0.00 2.40
1417 1418 3.743396 GCGAACTCCAGGCTAATAATCTG 59.257 47.826 0.00 0.00 0.00 2.90
1418 1419 4.501571 GCGAACTCCAGGCTAATAATCTGA 60.502 45.833 0.00 0.00 0.00 3.27
1419 1420 5.601662 CGAACTCCAGGCTAATAATCTGAA 58.398 41.667 0.00 0.00 0.00 3.02
1420 1421 5.694006 CGAACTCCAGGCTAATAATCTGAAG 59.306 44.000 0.00 0.00 0.00 3.02
1421 1422 4.967036 ACTCCAGGCTAATAATCTGAAGC 58.033 43.478 0.00 0.00 0.00 3.86
1422 1423 3.993081 CTCCAGGCTAATAATCTGAAGCG 59.007 47.826 0.00 0.00 35.79 4.68
1423 1424 2.481952 CCAGGCTAATAATCTGAAGCGC 59.518 50.000 0.00 0.00 35.79 5.92
1424 1425 3.133691 CAGGCTAATAATCTGAAGCGCA 58.866 45.455 11.47 0.00 35.79 6.09
1425 1426 3.750130 CAGGCTAATAATCTGAAGCGCAT 59.250 43.478 11.47 0.00 35.79 4.73
1426 1427 3.750130 AGGCTAATAATCTGAAGCGCATG 59.250 43.478 11.47 0.00 35.79 4.06
1427 1428 3.120060 GGCTAATAATCTGAAGCGCATGG 60.120 47.826 11.47 0.00 35.79 3.66
1428 1429 3.748048 GCTAATAATCTGAAGCGCATGGA 59.252 43.478 11.47 2.12 0.00 3.41
1429 1430 4.394300 GCTAATAATCTGAAGCGCATGGAT 59.606 41.667 11.47 4.71 0.00 3.41
1430 1431 5.582269 GCTAATAATCTGAAGCGCATGGATA 59.418 40.000 11.47 0.00 0.00 2.59
1431 1432 5.869753 AATAATCTGAAGCGCATGGATAC 57.130 39.130 11.47 0.00 0.00 2.24
1468 1469 4.021191 GGAAAGACAATTCCGAATCTGC 57.979 45.455 0.00 0.00 39.54 4.26
1469 1470 3.691609 GGAAAGACAATTCCGAATCTGCT 59.308 43.478 0.00 0.00 39.54 4.24
1470 1471 4.156739 GGAAAGACAATTCCGAATCTGCTT 59.843 41.667 0.00 0.00 39.54 3.91
1471 1472 5.335976 GGAAAGACAATTCCGAATCTGCTTT 60.336 40.000 11.66 11.66 39.54 3.51
1472 1473 4.691860 AGACAATTCCGAATCTGCTTTG 57.308 40.909 0.00 0.00 0.00 2.77
1473 1474 4.074970 AGACAATTCCGAATCTGCTTTGT 58.925 39.130 0.00 0.00 0.00 2.83
1474 1475 4.154918 AGACAATTCCGAATCTGCTTTGTC 59.845 41.667 12.23 12.23 40.91 3.18
1475 1476 4.074970 ACAATTCCGAATCTGCTTTGTCT 58.925 39.130 0.00 0.00 0.00 3.41
1476 1477 5.245531 ACAATTCCGAATCTGCTTTGTCTA 58.754 37.500 0.00 0.00 0.00 2.59
1477 1478 5.122396 ACAATTCCGAATCTGCTTTGTCTAC 59.878 40.000 0.00 0.00 0.00 2.59
1478 1479 2.876091 TCCGAATCTGCTTTGTCTACG 58.124 47.619 0.00 0.00 0.00 3.51
1479 1480 2.490509 TCCGAATCTGCTTTGTCTACGA 59.509 45.455 0.00 0.00 0.00 3.43
1480 1481 3.057104 TCCGAATCTGCTTTGTCTACGAA 60.057 43.478 0.00 0.00 0.00 3.85
1481 1482 3.865745 CCGAATCTGCTTTGTCTACGAAT 59.134 43.478 0.00 0.00 0.00 3.34
1482 1483 5.041287 CCGAATCTGCTTTGTCTACGAATA 58.959 41.667 0.00 0.00 0.00 1.75
1483 1484 5.518847 CCGAATCTGCTTTGTCTACGAATAA 59.481 40.000 0.00 0.00 0.00 1.40
1484 1485 6.291849 CCGAATCTGCTTTGTCTACGAATAAG 60.292 42.308 0.00 0.00 0.00 1.73
1485 1486 6.291849 CGAATCTGCTTTGTCTACGAATAAGG 60.292 42.308 0.00 0.00 0.00 2.69
1486 1487 5.654603 TCTGCTTTGTCTACGAATAAGGA 57.345 39.130 0.00 0.00 0.00 3.36
1487 1488 6.032956 TCTGCTTTGTCTACGAATAAGGAA 57.967 37.500 0.00 0.00 0.00 3.36
1488 1489 6.100004 TCTGCTTTGTCTACGAATAAGGAAG 58.900 40.000 0.00 0.00 0.00 3.46
1489 1490 4.630069 TGCTTTGTCTACGAATAAGGAAGC 59.370 41.667 0.00 0.00 0.00 3.86
1490 1491 4.870991 GCTTTGTCTACGAATAAGGAAGCT 59.129 41.667 0.00 0.00 0.00 3.74
1491 1492 6.040878 GCTTTGTCTACGAATAAGGAAGCTA 58.959 40.000 0.00 0.00 0.00 3.32
1492 1493 6.702282 GCTTTGTCTACGAATAAGGAAGCTAT 59.298 38.462 0.00 0.00 0.00 2.97
1493 1494 7.866393 GCTTTGTCTACGAATAAGGAAGCTATA 59.134 37.037 0.00 0.00 0.00 1.31
1494 1495 9.745880 CTTTGTCTACGAATAAGGAAGCTATAA 57.254 33.333 0.00 0.00 0.00 0.98
1495 1496 9.745880 TTTGTCTACGAATAAGGAAGCTATAAG 57.254 33.333 0.00 0.00 0.00 1.73
1496 1497 8.461249 TGTCTACGAATAAGGAAGCTATAAGT 57.539 34.615 0.00 0.00 0.00 2.24
1497 1498 9.565090 TGTCTACGAATAAGGAAGCTATAAGTA 57.435 33.333 0.00 0.00 0.00 2.24
1501 1502 8.535690 ACGAATAAGGAAGCTATAAGTAATGC 57.464 34.615 0.00 0.00 0.00 3.56
1502 1503 8.148351 ACGAATAAGGAAGCTATAAGTAATGCA 58.852 33.333 0.00 0.00 0.00 3.96
1503 1504 8.988934 CGAATAAGGAAGCTATAAGTAATGCAA 58.011 33.333 0.00 0.00 0.00 4.08
1505 1506 9.853177 AATAAGGAAGCTATAAGTAATGCAACT 57.147 29.630 0.00 0.00 0.00 3.16
1508 1509 8.839310 AGGAAGCTATAAGTAATGCAACTATG 57.161 34.615 0.00 0.00 0.00 2.23
1509 1510 8.651389 AGGAAGCTATAAGTAATGCAACTATGA 58.349 33.333 0.00 0.00 0.00 2.15
1510 1511 9.273016 GGAAGCTATAAGTAATGCAACTATGAA 57.727 33.333 0.00 0.00 0.00 2.57
1518 1519 7.741027 AGTAATGCAACTATGAATCTCATGG 57.259 36.000 0.00 0.00 40.63 3.66
1519 1520 7.512130 AGTAATGCAACTATGAATCTCATGGA 58.488 34.615 6.97 0.00 37.52 3.41
1520 1521 6.879276 AATGCAACTATGAATCTCATGGAG 57.121 37.500 6.97 0.00 37.52 3.86
1521 1522 5.619132 TGCAACTATGAATCTCATGGAGA 57.381 39.130 6.97 0.00 43.20 3.71
1522 1523 5.608449 TGCAACTATGAATCTCATGGAGAG 58.392 41.667 6.97 0.00 42.26 3.20
1523 1524 5.129980 TGCAACTATGAATCTCATGGAGAGT 59.870 40.000 6.97 0.00 42.26 3.24
1524 1525 6.054295 GCAACTATGAATCTCATGGAGAGTT 58.946 40.000 6.97 2.72 42.26 3.01
1525 1526 6.202570 GCAACTATGAATCTCATGGAGAGTTC 59.797 42.308 6.97 6.73 42.26 3.01
1526 1527 6.083098 ACTATGAATCTCATGGAGAGTTCG 57.917 41.667 6.97 0.00 42.26 3.95
1527 1528 5.830457 ACTATGAATCTCATGGAGAGTTCGA 59.170 40.000 6.97 0.00 42.26 3.71
1528 1529 5.804944 ATGAATCTCATGGAGAGTTCGAT 57.195 39.130 2.13 2.08 42.26 3.59
1529 1530 5.193663 TGAATCTCATGGAGAGTTCGATC 57.806 43.478 2.13 0.00 42.26 3.69
1530 1531 4.038522 TGAATCTCATGGAGAGTTCGATCC 59.961 45.833 2.13 0.00 42.26 3.36
1531 1532 3.304911 TCTCATGGAGAGTTCGATCCT 57.695 47.619 4.50 0.00 44.98 3.24
1532 1533 2.954989 TCTCATGGAGAGTTCGATCCTG 59.045 50.000 4.50 1.41 44.98 3.86
1533 1534 2.034878 TCATGGAGAGTTCGATCCTGG 58.965 52.381 4.50 0.00 36.50 4.45
1534 1535 0.755686 ATGGAGAGTTCGATCCTGGC 59.244 55.000 4.50 0.00 36.50 4.85
1535 1536 0.324738 TGGAGAGTTCGATCCTGGCT 60.325 55.000 4.50 0.00 36.50 4.75
1536 1537 0.387565 GGAGAGTTCGATCCTGGCTC 59.612 60.000 0.00 0.00 32.51 4.70
1537 1538 1.107114 GAGAGTTCGATCCTGGCTCA 58.893 55.000 0.00 0.00 0.00 4.26
1538 1539 1.066908 GAGAGTTCGATCCTGGCTCAG 59.933 57.143 0.00 0.00 0.00 3.35
1552 1553 2.125552 TCAGGATGAACGCTGGCG 60.126 61.111 13.56 13.56 45.97 5.69
1553 1554 3.197790 CAGGATGAACGCTGGCGG 61.198 66.667 18.99 0.00 41.07 6.13
1556 1557 3.204827 GATGAACGCTGGCGGCAT 61.205 61.111 19.92 19.23 44.69 4.40
1557 1558 3.459378 GATGAACGCTGGCGGCATG 62.459 63.158 19.92 11.19 44.69 4.06
1561 1562 4.776322 ACGCTGGCGGCATGCTTA 62.776 61.111 19.92 0.64 45.43 3.09
1562 1563 3.507924 CGCTGGCGGCATGCTTAA 61.508 61.111 19.92 0.10 45.43 1.85
1563 1564 2.102946 GCTGGCGGCATGCTTAAC 59.897 61.111 18.92 6.46 45.43 2.01
1564 1565 2.699768 GCTGGCGGCATGCTTAACA 61.700 57.895 18.92 10.74 45.43 2.41
1565 1566 1.137404 CTGGCGGCATGCTTAACAC 59.863 57.895 18.92 0.00 45.43 3.32
1566 1567 1.585267 CTGGCGGCATGCTTAACACA 61.585 55.000 18.92 7.64 45.43 3.72
1567 1568 0.964860 TGGCGGCATGCTTAACACAT 60.965 50.000 18.92 0.00 45.43 3.21
1568 1569 0.526096 GGCGGCATGCTTAACACATG 60.526 55.000 18.92 8.69 46.19 3.21
1575 1576 2.967459 TGCTTAACACATGCAAGTCG 57.033 45.000 0.00 0.00 34.59 4.18
1576 1577 2.488952 TGCTTAACACATGCAAGTCGA 58.511 42.857 0.00 0.00 34.59 4.20
1577 1578 2.875317 TGCTTAACACATGCAAGTCGAA 59.125 40.909 0.00 0.00 34.59 3.71
1578 1579 3.226347 GCTTAACACATGCAAGTCGAAC 58.774 45.455 0.00 0.00 0.00 3.95
1579 1580 3.469629 CTTAACACATGCAAGTCGAACG 58.530 45.455 0.00 0.00 0.00 3.95
1580 1581 0.586319 AACACATGCAAGTCGAACGG 59.414 50.000 0.00 0.00 0.00 4.44
1581 1582 1.227999 ACACATGCAAGTCGAACGGG 61.228 55.000 0.00 0.00 0.00 5.28
1582 1583 0.948623 CACATGCAAGTCGAACGGGA 60.949 55.000 0.00 0.00 0.00 5.14
1583 1584 0.250124 ACATGCAAGTCGAACGGGAA 60.250 50.000 0.00 0.00 0.00 3.97
1584 1585 0.443869 CATGCAAGTCGAACGGGAAG 59.556 55.000 0.00 0.00 0.00 3.46
1585 1586 0.034896 ATGCAAGTCGAACGGGAAGT 59.965 50.000 0.00 0.00 0.00 3.01
1586 1587 0.878523 TGCAAGTCGAACGGGAAGTG 60.879 55.000 0.00 0.00 0.00 3.16
1587 1588 1.566018 GCAAGTCGAACGGGAAGTGG 61.566 60.000 0.00 0.00 0.00 4.00
1588 1589 0.249741 CAAGTCGAACGGGAAGTGGT 60.250 55.000 0.00 0.00 0.00 4.16
1589 1590 0.249741 AAGTCGAACGGGAAGTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
1590 1591 1.068585 GTCGAACGGGAAGTGGTGT 59.931 57.895 0.00 0.00 0.00 4.16
1591 1592 0.531311 GTCGAACGGGAAGTGGTGTT 60.531 55.000 0.00 0.00 0.00 3.32
1592 1593 0.178533 TCGAACGGGAAGTGGTGTTT 59.821 50.000 0.00 0.00 0.00 2.83
1593 1594 0.584876 CGAACGGGAAGTGGTGTTTC 59.415 55.000 0.00 0.00 0.00 2.78
1594 1595 0.949397 GAACGGGAAGTGGTGTTTCC 59.051 55.000 0.00 0.00 42.73 3.13
1595 1596 0.256464 AACGGGAAGTGGTGTTTCCA 59.744 50.000 6.38 0.00 44.77 3.53
1602 1603 2.911928 TGGTGTTTCCAGTGGCGA 59.088 55.556 3.51 0.00 41.93 5.54
2142 2146 2.895680 TTTTTGCCCGCAGTGCAA 59.104 50.000 16.83 0.00 46.30 4.08
2145 2149 4.283403 TTGCCCGCAGTGCAAAGC 62.283 61.111 16.83 14.46 45.11 3.51
2148 2152 4.347453 CCCGCAGTGCAAAGCCAC 62.347 66.667 16.83 0.00 35.98 5.01
2149 2153 4.347453 CCGCAGTGCAAAGCCACC 62.347 66.667 16.83 0.00 36.38 4.61
2150 2154 4.688419 CGCAGTGCAAAGCCACCG 62.688 66.667 16.83 0.00 36.38 4.94
2151 2155 3.286751 GCAGTGCAAAGCCACCGA 61.287 61.111 11.09 0.00 36.38 4.69
2152 2156 2.844451 GCAGTGCAAAGCCACCGAA 61.844 57.895 11.09 0.00 36.38 4.30
2153 2157 1.959085 CAGTGCAAAGCCACCGAAT 59.041 52.632 0.00 0.00 36.38 3.34
2154 2158 1.164411 CAGTGCAAAGCCACCGAATA 58.836 50.000 0.00 0.00 36.38 1.75
2155 2159 1.135689 CAGTGCAAAGCCACCGAATAC 60.136 52.381 0.00 0.00 36.38 1.89
2156 2160 0.179200 GTGCAAAGCCACCGAATACG 60.179 55.000 0.00 0.00 39.43 3.06
2157 2161 0.320858 TGCAAAGCCACCGAATACGA 60.321 50.000 0.00 0.00 42.66 3.43
2158 2162 0.800012 GCAAAGCCACCGAATACGAA 59.200 50.000 0.00 0.00 42.66 3.85
2159 2163 1.202031 GCAAAGCCACCGAATACGAAG 60.202 52.381 0.00 0.00 42.66 3.79
2160 2164 2.343101 CAAAGCCACCGAATACGAAGA 58.657 47.619 0.00 0.00 42.66 2.87
2161 2165 2.936498 CAAAGCCACCGAATACGAAGAT 59.064 45.455 0.00 0.00 42.66 2.40
2162 2166 2.510768 AGCCACCGAATACGAAGATC 57.489 50.000 0.00 0.00 42.66 2.75
2163 2167 2.032620 AGCCACCGAATACGAAGATCT 58.967 47.619 0.00 0.00 42.66 2.75
2164 2168 2.128035 GCCACCGAATACGAAGATCTG 58.872 52.381 0.00 0.00 42.66 2.90
2165 2169 2.481449 GCCACCGAATACGAAGATCTGT 60.481 50.000 0.00 0.00 42.66 3.41
2166 2170 3.372954 CCACCGAATACGAAGATCTGTC 58.627 50.000 0.00 0.00 42.66 3.51
2167 2171 3.372954 CACCGAATACGAAGATCTGTCC 58.627 50.000 0.00 0.00 42.66 4.02
2168 2172 2.033049 ACCGAATACGAAGATCTGTCCG 59.967 50.000 0.00 3.35 42.66 4.79
2169 2173 2.033049 CCGAATACGAAGATCTGTCCGT 59.967 50.000 17.94 17.94 42.66 4.69
2170 2174 3.036633 CGAATACGAAGATCTGTCCGTG 58.963 50.000 21.06 7.07 42.66 4.94
2171 2175 3.372954 GAATACGAAGATCTGTCCGTGG 58.627 50.000 21.06 1.11 36.58 4.94
2172 2176 2.118313 TACGAAGATCTGTCCGTGGA 57.882 50.000 21.06 6.27 36.58 4.02
2173 2177 0.811915 ACGAAGATCTGTCCGTGGAG 59.188 55.000 14.60 0.00 33.69 3.86
2174 2178 1.095600 CGAAGATCTGTCCGTGGAGA 58.904 55.000 0.00 0.00 0.00 3.71
2175 2179 1.472878 CGAAGATCTGTCCGTGGAGAA 59.527 52.381 0.00 0.00 0.00 2.87
2176 2180 2.094700 CGAAGATCTGTCCGTGGAGAAA 60.095 50.000 0.00 0.00 0.00 2.52
2177 2181 3.614150 CGAAGATCTGTCCGTGGAGAAAA 60.614 47.826 0.00 0.00 0.00 2.29
2178 2182 3.601443 AGATCTGTCCGTGGAGAAAAG 57.399 47.619 0.00 0.00 0.00 2.27
2179 2183 2.900546 AGATCTGTCCGTGGAGAAAAGT 59.099 45.455 0.00 0.00 0.00 2.66
2180 2184 2.814280 TCTGTCCGTGGAGAAAAGTC 57.186 50.000 0.00 0.00 0.00 3.01
2181 2185 2.317040 TCTGTCCGTGGAGAAAAGTCT 58.683 47.619 0.00 0.00 36.55 3.24
2192 2196 1.700186 AGAAAAGTCTCACCCTGGACC 59.300 52.381 0.00 0.00 33.39 4.46
2193 2197 0.396811 AAAAGTCTCACCCTGGACCG 59.603 55.000 0.00 0.00 33.39 4.79
2194 2198 2.113243 AAAGTCTCACCCTGGACCGC 62.113 60.000 0.00 0.00 33.39 5.68
2195 2199 3.311110 GTCTCACCCTGGACCGCA 61.311 66.667 0.00 0.00 0.00 5.69
2196 2200 2.284625 TCTCACCCTGGACCGCAT 60.285 61.111 0.00 0.00 0.00 4.73
2197 2201 2.187946 CTCACCCTGGACCGCATC 59.812 66.667 0.00 0.00 0.00 3.91
2198 2202 3.723235 CTCACCCTGGACCGCATCG 62.723 68.421 0.00 0.00 0.00 3.84
2199 2203 4.082523 CACCCTGGACCGCATCGT 62.083 66.667 0.00 0.00 0.00 3.73
2200 2204 3.319198 ACCCTGGACCGCATCGTT 61.319 61.111 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
276 277 2.439104 GGGCCTGTAGCTCAGAGGG 61.439 68.421 0.84 0.00 46.27 4.30
884 885 1.137872 AGCTGAGGCATCCTAACGAAG 59.862 52.381 0.00 0.00 41.70 3.79
1214 1215 4.334759 GTGACACTCTACCGCTGAGTTATA 59.665 45.833 0.00 0.00 42.21 0.98
1215 1216 3.128938 GTGACACTCTACCGCTGAGTTAT 59.871 47.826 0.00 0.00 42.21 1.89
1216 1217 2.486982 GTGACACTCTACCGCTGAGTTA 59.513 50.000 0.00 0.00 42.21 2.24
1217 1218 1.269998 GTGACACTCTACCGCTGAGTT 59.730 52.381 0.00 0.00 42.21 3.01
1218 1219 0.882474 GTGACACTCTACCGCTGAGT 59.118 55.000 0.00 0.00 44.62 3.41
1219 1220 0.171455 GGTGACACTCTACCGCTGAG 59.829 60.000 5.39 0.00 37.55 3.35
1220 1221 0.251209 AGGTGACACTCTACCGCTGA 60.251 55.000 5.39 0.00 41.85 4.26
1221 1222 0.603569 AAGGTGACACTCTACCGCTG 59.396 55.000 5.39 0.00 41.85 5.18
1222 1223 0.603569 CAAGGTGACACTCTACCGCT 59.396 55.000 5.39 0.00 41.85 5.52
1223 1224 0.601558 TCAAGGTGACACTCTACCGC 59.398 55.000 5.39 0.00 41.85 5.68
1224 1225 2.349297 GTCAAGGTGACACTCTACCG 57.651 55.000 5.39 0.00 46.22 4.02
1236 1237 0.106149 GACTTCCACCACGTCAAGGT 59.894 55.000 0.00 0.00 40.85 3.50
1237 1238 0.105964 TGACTTCCACCACGTCAAGG 59.894 55.000 0.00 0.00 34.99 3.61
1238 1239 2.069273 GATGACTTCCACCACGTCAAG 58.931 52.381 0.00 0.00 40.61 3.02
1239 1240 1.414550 TGATGACTTCCACCACGTCAA 59.585 47.619 0.00 0.00 40.61 3.18
1240 1241 1.000843 CTGATGACTTCCACCACGTCA 59.999 52.381 0.00 0.00 41.36 4.35
1241 1242 1.000955 ACTGATGACTTCCACCACGTC 59.999 52.381 0.00 0.00 0.00 4.34
1242 1243 1.048601 ACTGATGACTTCCACCACGT 58.951 50.000 0.00 0.00 0.00 4.49
1243 1244 2.069273 GAACTGATGACTTCCACCACG 58.931 52.381 0.00 0.00 0.00 4.94
1244 1245 2.069273 CGAACTGATGACTTCCACCAC 58.931 52.381 0.00 0.00 0.00 4.16
1245 1246 1.967779 TCGAACTGATGACTTCCACCA 59.032 47.619 0.00 0.00 0.00 4.17
1246 1247 2.611518 CTCGAACTGATGACTTCCACC 58.388 52.381 0.00 0.00 0.00 4.61
1247 1248 1.996191 GCTCGAACTGATGACTTCCAC 59.004 52.381 0.00 0.00 0.00 4.02
1248 1249 1.066858 GGCTCGAACTGATGACTTCCA 60.067 52.381 0.00 0.00 0.00 3.53
1249 1250 1.205893 AGGCTCGAACTGATGACTTCC 59.794 52.381 0.00 0.00 0.00 3.46
1250 1251 2.094494 TCAGGCTCGAACTGATGACTTC 60.094 50.000 13.70 0.00 39.87 3.01
1251 1252 1.895798 TCAGGCTCGAACTGATGACTT 59.104 47.619 13.70 0.00 39.87 3.01
1252 1253 1.550327 TCAGGCTCGAACTGATGACT 58.450 50.000 13.70 0.00 39.87 3.41
1258 1259 2.366916 AGGGATAATCAGGCTCGAACTG 59.633 50.000 9.82 9.82 37.30 3.16
1259 1260 2.683768 AGGGATAATCAGGCTCGAACT 58.316 47.619 0.00 0.00 0.00 3.01
1260 1261 4.602340 TTAGGGATAATCAGGCTCGAAC 57.398 45.455 0.00 0.00 0.00 3.95
1261 1262 4.202326 GGTTTAGGGATAATCAGGCTCGAA 60.202 45.833 0.00 0.00 0.00 3.71
1262 1263 3.323979 GGTTTAGGGATAATCAGGCTCGA 59.676 47.826 0.00 0.00 0.00 4.04
1263 1264 3.557264 GGGTTTAGGGATAATCAGGCTCG 60.557 52.174 0.00 0.00 0.00 5.03
1264 1265 3.394606 TGGGTTTAGGGATAATCAGGCTC 59.605 47.826 0.00 0.00 0.00 4.70
1265 1266 3.403322 TGGGTTTAGGGATAATCAGGCT 58.597 45.455 0.00 0.00 0.00 4.58
1266 1267 3.876309 TGGGTTTAGGGATAATCAGGC 57.124 47.619 0.00 0.00 0.00 4.85
1267 1268 5.536161 CACATTGGGTTTAGGGATAATCAGG 59.464 44.000 0.00 0.00 0.00 3.86
1268 1269 6.364701 TCACATTGGGTTTAGGGATAATCAG 58.635 40.000 0.00 0.00 0.00 2.90
1269 1270 6.069088 ACTCACATTGGGTTTAGGGATAATCA 60.069 38.462 0.00 0.00 0.00 2.57
1270 1271 6.365520 ACTCACATTGGGTTTAGGGATAATC 58.634 40.000 0.00 0.00 0.00 1.75
1271 1272 6.341408 ACTCACATTGGGTTTAGGGATAAT 57.659 37.500 0.00 0.00 0.00 1.28
1272 1273 5.789574 ACTCACATTGGGTTTAGGGATAA 57.210 39.130 0.00 0.00 0.00 1.75
1273 1274 5.789574 AACTCACATTGGGTTTAGGGATA 57.210 39.130 0.00 0.00 37.96 2.59
1274 1275 4.675063 AACTCACATTGGGTTTAGGGAT 57.325 40.909 0.00 0.00 37.96 3.85
1295 1296 6.431852 CGGGGGAGTAAGTCAAAATAGAAAAA 59.568 38.462 0.00 0.00 0.00 1.94
1296 1297 5.941647 CGGGGGAGTAAGTCAAAATAGAAAA 59.058 40.000 0.00 0.00 0.00 2.29
1297 1298 5.493809 CGGGGGAGTAAGTCAAAATAGAAA 58.506 41.667 0.00 0.00 0.00 2.52
1298 1299 4.624604 GCGGGGGAGTAAGTCAAAATAGAA 60.625 45.833 0.00 0.00 0.00 2.10
1299 1300 3.118519 GCGGGGGAGTAAGTCAAAATAGA 60.119 47.826 0.00 0.00 0.00 1.98
1300 1301 3.203716 GCGGGGGAGTAAGTCAAAATAG 58.796 50.000 0.00 0.00 0.00 1.73
1301 1302 2.092807 GGCGGGGGAGTAAGTCAAAATA 60.093 50.000 0.00 0.00 0.00 1.40
1302 1303 1.340697 GGCGGGGGAGTAAGTCAAAAT 60.341 52.381 0.00 0.00 0.00 1.82
1303 1304 0.037160 GGCGGGGGAGTAAGTCAAAA 59.963 55.000 0.00 0.00 0.00 2.44
1304 1305 1.128809 TGGCGGGGGAGTAAGTCAAA 61.129 55.000 0.00 0.00 0.00 2.69
1305 1306 1.536907 TGGCGGGGGAGTAAGTCAA 60.537 57.895 0.00 0.00 0.00 3.18
1306 1307 2.120940 TGGCGGGGGAGTAAGTCA 59.879 61.111 0.00 0.00 0.00 3.41
1307 1308 2.582978 GTGGCGGGGGAGTAAGTC 59.417 66.667 0.00 0.00 0.00 3.01
1308 1309 3.387947 CGTGGCGGGGGAGTAAGT 61.388 66.667 0.00 0.00 0.00 2.24
1309 1310 3.072468 TCGTGGCGGGGGAGTAAG 61.072 66.667 0.00 0.00 0.00 2.34
1310 1311 3.072468 CTCGTGGCGGGGGAGTAA 61.072 66.667 0.00 0.00 0.00 2.24
1321 1322 2.125673 ATTCCCGTTCGCTCGTGG 60.126 61.111 0.00 1.03 0.00 4.94
1322 1323 2.452813 CCATTCCCGTTCGCTCGTG 61.453 63.158 0.00 0.00 0.00 4.35
1323 1324 1.956629 ATCCATTCCCGTTCGCTCGT 61.957 55.000 0.00 0.00 0.00 4.18
1324 1325 0.031585 TATCCATTCCCGTTCGCTCG 59.968 55.000 0.00 0.00 0.00 5.03
1325 1326 2.135933 CTTATCCATTCCCGTTCGCTC 58.864 52.381 0.00 0.00 0.00 5.03
1326 1327 1.760613 TCTTATCCATTCCCGTTCGCT 59.239 47.619 0.00 0.00 0.00 4.93
1327 1328 2.135933 CTCTTATCCATTCCCGTTCGC 58.864 52.381 0.00 0.00 0.00 4.70
1328 1329 2.755650 CCTCTTATCCATTCCCGTTCG 58.244 52.381 0.00 0.00 0.00 3.95
1329 1330 2.104963 AGCCTCTTATCCATTCCCGTTC 59.895 50.000 0.00 0.00 0.00 3.95
1330 1331 2.127708 AGCCTCTTATCCATTCCCGTT 58.872 47.619 0.00 0.00 0.00 4.44
1331 1332 1.807814 AGCCTCTTATCCATTCCCGT 58.192 50.000 0.00 0.00 0.00 5.28
1332 1333 2.158755 ACAAGCCTCTTATCCATTCCCG 60.159 50.000 0.00 0.00 0.00 5.14
1333 1334 3.217626 CACAAGCCTCTTATCCATTCCC 58.782 50.000 0.00 0.00 0.00 3.97
1334 1335 3.217626 CCACAAGCCTCTTATCCATTCC 58.782 50.000 0.00 0.00 0.00 3.01
1335 1336 3.117888 TCCCACAAGCCTCTTATCCATTC 60.118 47.826 0.00 0.00 0.00 2.67
1336 1337 2.852449 TCCCACAAGCCTCTTATCCATT 59.148 45.455 0.00 0.00 0.00 3.16
1337 1338 2.492025 TCCCACAAGCCTCTTATCCAT 58.508 47.619 0.00 0.00 0.00 3.41
1338 1339 1.965414 TCCCACAAGCCTCTTATCCA 58.035 50.000 0.00 0.00 0.00 3.41
1339 1340 3.117888 TCAATCCCACAAGCCTCTTATCC 60.118 47.826 0.00 0.00 0.00 2.59
1340 1341 3.879892 GTCAATCCCACAAGCCTCTTATC 59.120 47.826 0.00 0.00 0.00 1.75
1341 1342 3.682718 CGTCAATCCCACAAGCCTCTTAT 60.683 47.826 0.00 0.00 0.00 1.73
1342 1343 2.354704 CGTCAATCCCACAAGCCTCTTA 60.355 50.000 0.00 0.00 0.00 2.10
1343 1344 1.611673 CGTCAATCCCACAAGCCTCTT 60.612 52.381 0.00 0.00 0.00 2.85
1344 1345 0.036010 CGTCAATCCCACAAGCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
1345 1346 0.321653 ACGTCAATCCCACAAGCCTC 60.322 55.000 0.00 0.00 0.00 4.70
1346 1347 0.606401 CACGTCAATCCCACAAGCCT 60.606 55.000 0.00 0.00 0.00 4.58
1347 1348 0.605319 TCACGTCAATCCCACAAGCC 60.605 55.000 0.00 0.00 0.00 4.35
1348 1349 1.453155 ATCACGTCAATCCCACAAGC 58.547 50.000 0.00 0.00 0.00 4.01
1349 1350 3.198068 CCTATCACGTCAATCCCACAAG 58.802 50.000 0.00 0.00 0.00 3.16
1350 1351 2.093181 CCCTATCACGTCAATCCCACAA 60.093 50.000 0.00 0.00 0.00 3.33
1351 1352 1.484653 CCCTATCACGTCAATCCCACA 59.515 52.381 0.00 0.00 0.00 4.17
1352 1353 1.485066 ACCCTATCACGTCAATCCCAC 59.515 52.381 0.00 0.00 0.00 4.61
1353 1354 1.874129 ACCCTATCACGTCAATCCCA 58.126 50.000 0.00 0.00 0.00 4.37
1354 1355 2.299297 CCTACCCTATCACGTCAATCCC 59.701 54.545 0.00 0.00 0.00 3.85
1355 1356 2.299297 CCCTACCCTATCACGTCAATCC 59.701 54.545 0.00 0.00 0.00 3.01
1356 1357 2.963782 ACCCTACCCTATCACGTCAATC 59.036 50.000 0.00 0.00 0.00 2.67
1357 1358 3.042059 ACCCTACCCTATCACGTCAAT 57.958 47.619 0.00 0.00 0.00 2.57
1358 1359 2.498481 CAACCCTACCCTATCACGTCAA 59.502 50.000 0.00 0.00 0.00 3.18
1359 1360 2.104967 CAACCCTACCCTATCACGTCA 58.895 52.381 0.00 0.00 0.00 4.35
1360 1361 1.411612 CCAACCCTACCCTATCACGTC 59.588 57.143 0.00 0.00 0.00 4.34
1361 1362 1.492764 CCAACCCTACCCTATCACGT 58.507 55.000 0.00 0.00 0.00 4.49
1362 1363 0.106149 GCCAACCCTACCCTATCACG 59.894 60.000 0.00 0.00 0.00 4.35
1363 1364 1.508256 AGCCAACCCTACCCTATCAC 58.492 55.000 0.00 0.00 0.00 3.06
1364 1365 3.648683 ATAGCCAACCCTACCCTATCA 57.351 47.619 0.00 0.00 0.00 2.15
1365 1366 4.466726 CAGTATAGCCAACCCTACCCTATC 59.533 50.000 0.00 0.00 0.00 2.08
1366 1367 4.426704 CAGTATAGCCAACCCTACCCTAT 58.573 47.826 0.00 0.00 0.00 2.57
1367 1368 3.853207 CAGTATAGCCAACCCTACCCTA 58.147 50.000 0.00 0.00 0.00 3.53
1368 1369 2.690840 CAGTATAGCCAACCCTACCCT 58.309 52.381 0.00 0.00 0.00 4.34
1369 1370 1.071857 GCAGTATAGCCAACCCTACCC 59.928 57.143 0.00 0.00 0.00 3.69
1370 1371 2.047830 AGCAGTATAGCCAACCCTACC 58.952 52.381 0.00 0.00 34.23 3.18
1371 1372 2.224305 CCAGCAGTATAGCCAACCCTAC 60.224 54.545 0.00 0.00 34.23 3.18
1372 1373 2.047061 CCAGCAGTATAGCCAACCCTA 58.953 52.381 0.00 0.00 34.23 3.53
1373 1374 0.839946 CCAGCAGTATAGCCAACCCT 59.160 55.000 0.00 0.00 34.23 4.34
1374 1375 0.546598 ACCAGCAGTATAGCCAACCC 59.453 55.000 0.00 0.00 34.23 4.11
1375 1376 1.668419 CACCAGCAGTATAGCCAACC 58.332 55.000 0.00 0.00 34.23 3.77
1376 1377 1.668419 CCACCAGCAGTATAGCCAAC 58.332 55.000 0.00 0.00 34.23 3.77
1377 1378 0.107214 GCCACCAGCAGTATAGCCAA 60.107 55.000 0.00 0.00 42.97 4.52
1378 1379 1.526887 GCCACCAGCAGTATAGCCA 59.473 57.895 0.00 0.00 42.97 4.75
1379 1380 1.595382 CGCCACCAGCAGTATAGCC 60.595 63.158 0.00 0.00 44.04 3.93
1380 1381 0.179084 TTCGCCACCAGCAGTATAGC 60.179 55.000 0.00 0.00 44.04 2.97
1381 1382 1.137086 AGTTCGCCACCAGCAGTATAG 59.863 52.381 0.00 0.00 44.04 1.31
1382 1383 1.136305 GAGTTCGCCACCAGCAGTATA 59.864 52.381 0.00 0.00 44.04 1.47
1383 1384 0.108138 GAGTTCGCCACCAGCAGTAT 60.108 55.000 0.00 0.00 44.04 2.12
1384 1385 1.292223 GAGTTCGCCACCAGCAGTA 59.708 57.895 0.00 0.00 44.04 2.74
1385 1386 2.031163 GAGTTCGCCACCAGCAGT 59.969 61.111 0.00 0.00 44.04 4.40
1386 1387 2.743928 GGAGTTCGCCACCAGCAG 60.744 66.667 0.00 0.00 44.04 4.24
1387 1388 3.535629 CTGGAGTTCGCCACCAGCA 62.536 63.158 0.00 0.00 43.32 4.41
1388 1389 2.743928 CTGGAGTTCGCCACCAGC 60.744 66.667 0.00 0.00 43.32 4.85
1390 1391 4.329545 GCCTGGAGTTCGCCACCA 62.330 66.667 0.00 0.00 33.52 4.17
1391 1392 2.180159 TTAGCCTGGAGTTCGCCACC 62.180 60.000 0.00 0.00 33.52 4.61
1392 1393 0.107654 ATTAGCCTGGAGTTCGCCAC 60.108 55.000 0.00 0.00 33.52 5.01
1393 1394 1.491668 TATTAGCCTGGAGTTCGCCA 58.508 50.000 0.00 0.00 36.30 5.69
1394 1395 2.614829 TTATTAGCCTGGAGTTCGCC 57.385 50.000 0.00 0.00 0.00 5.54
1395 1396 3.743396 CAGATTATTAGCCTGGAGTTCGC 59.257 47.826 0.00 0.00 0.00 4.70
1396 1397 5.201713 TCAGATTATTAGCCTGGAGTTCG 57.798 43.478 0.00 0.00 0.00 3.95
1397 1398 5.468409 GCTTCAGATTATTAGCCTGGAGTTC 59.532 44.000 0.00 0.00 36.24 3.01
1398 1399 5.372373 GCTTCAGATTATTAGCCTGGAGTT 58.628 41.667 0.00 0.00 36.24 3.01
1399 1400 4.502259 CGCTTCAGATTATTAGCCTGGAGT 60.502 45.833 0.00 0.00 36.24 3.85
1400 1401 3.993081 CGCTTCAGATTATTAGCCTGGAG 59.007 47.826 0.00 0.00 36.77 3.86
1401 1402 3.803715 GCGCTTCAGATTATTAGCCTGGA 60.804 47.826 0.00 0.00 0.00 3.86
1402 1403 2.481952 GCGCTTCAGATTATTAGCCTGG 59.518 50.000 0.00 0.00 0.00 4.45
1403 1404 3.133691 TGCGCTTCAGATTATTAGCCTG 58.866 45.455 9.73 0.00 0.00 4.85
1404 1405 3.475566 TGCGCTTCAGATTATTAGCCT 57.524 42.857 9.73 0.00 0.00 4.58
1405 1406 3.120060 CCATGCGCTTCAGATTATTAGCC 60.120 47.826 9.73 0.00 0.00 3.93
1406 1407 3.748048 TCCATGCGCTTCAGATTATTAGC 59.252 43.478 9.73 0.00 0.00 3.09
1407 1408 6.591448 TGTATCCATGCGCTTCAGATTATTAG 59.409 38.462 9.73 0.00 0.00 1.73
1408 1409 6.463360 TGTATCCATGCGCTTCAGATTATTA 58.537 36.000 9.73 0.00 0.00 0.98
1409 1410 5.308014 TGTATCCATGCGCTTCAGATTATT 58.692 37.500 9.73 0.00 0.00 1.40
1410 1411 4.898320 TGTATCCATGCGCTTCAGATTAT 58.102 39.130 9.73 0.00 0.00 1.28
1411 1412 4.335400 TGTATCCATGCGCTTCAGATTA 57.665 40.909 9.73 0.00 0.00 1.75
1412 1413 3.198409 TGTATCCATGCGCTTCAGATT 57.802 42.857 9.73 0.00 0.00 2.40
1413 1414 2.916702 TGTATCCATGCGCTTCAGAT 57.083 45.000 9.73 9.56 0.00 2.90
1414 1415 2.093500 ACTTGTATCCATGCGCTTCAGA 60.093 45.455 9.73 1.61 0.00 3.27
1415 1416 2.283298 ACTTGTATCCATGCGCTTCAG 58.717 47.619 9.73 0.00 0.00 3.02
1416 1417 2.401583 ACTTGTATCCATGCGCTTCA 57.598 45.000 9.73 0.00 0.00 3.02
1417 1418 4.083802 GGATAACTTGTATCCATGCGCTTC 60.084 45.833 9.73 0.00 42.29 3.86
1418 1419 3.815401 GGATAACTTGTATCCATGCGCTT 59.185 43.478 9.73 0.00 42.29 4.68
1419 1420 3.071602 AGGATAACTTGTATCCATGCGCT 59.928 43.478 9.73 0.00 44.52 5.92
1420 1421 3.403038 AGGATAACTTGTATCCATGCGC 58.597 45.455 13.50 0.00 44.52 6.09
1440 1441 4.072131 TCGGAATTGTCTTTCCTTCCAAG 58.928 43.478 2.09 0.00 42.57 3.61
1441 1442 4.093472 TCGGAATTGTCTTTCCTTCCAA 57.907 40.909 2.09 0.00 42.57 3.53
1442 1443 3.780804 TCGGAATTGTCTTTCCTTCCA 57.219 42.857 2.09 0.00 42.57 3.53
1443 1444 4.944317 AGATTCGGAATTGTCTTTCCTTCC 59.056 41.667 4.47 0.00 42.57 3.46
1444 1445 5.674820 GCAGATTCGGAATTGTCTTTCCTTC 60.675 44.000 4.47 0.00 42.57 3.46
1445 1446 4.156739 GCAGATTCGGAATTGTCTTTCCTT 59.843 41.667 4.47 0.00 42.57 3.36
1446 1447 3.691609 GCAGATTCGGAATTGTCTTTCCT 59.308 43.478 4.47 0.00 42.57 3.36
1447 1448 3.691609 AGCAGATTCGGAATTGTCTTTCC 59.308 43.478 4.47 0.00 41.54 3.13
1448 1449 4.954092 AGCAGATTCGGAATTGTCTTTC 57.046 40.909 4.47 0.00 0.00 2.62
1449 1450 5.010012 ACAAAGCAGATTCGGAATTGTCTTT 59.990 36.000 4.47 10.70 0.00 2.52
1450 1451 4.520492 ACAAAGCAGATTCGGAATTGTCTT 59.480 37.500 4.47 5.76 0.00 3.01
1451 1452 4.074970 ACAAAGCAGATTCGGAATTGTCT 58.925 39.130 4.47 0.00 0.00 3.41
1452 1453 4.154918 AGACAAAGCAGATTCGGAATTGTC 59.845 41.667 18.19 18.19 43.23 3.18
1453 1454 4.074970 AGACAAAGCAGATTCGGAATTGT 58.925 39.130 4.47 4.87 32.68 2.71
1454 1455 4.691860 AGACAAAGCAGATTCGGAATTG 57.308 40.909 4.47 6.61 0.00 2.32
1455 1456 4.330074 CGTAGACAAAGCAGATTCGGAATT 59.670 41.667 4.47 0.00 0.00 2.17
1456 1457 3.865745 CGTAGACAAAGCAGATTCGGAAT 59.134 43.478 2.19 2.19 0.00 3.01
1457 1458 3.057104 TCGTAGACAAAGCAGATTCGGAA 60.057 43.478 0.00 0.00 0.00 4.30
1458 1459 2.490509 TCGTAGACAAAGCAGATTCGGA 59.509 45.455 0.00 0.00 0.00 4.55
1459 1460 2.876091 TCGTAGACAAAGCAGATTCGG 58.124 47.619 0.00 0.00 0.00 4.30
1460 1461 6.291849 CCTTATTCGTAGACAAAGCAGATTCG 60.292 42.308 0.00 0.00 34.32 3.34
1461 1462 6.757010 TCCTTATTCGTAGACAAAGCAGATTC 59.243 38.462 0.00 0.00 34.32 2.52
1462 1463 6.640518 TCCTTATTCGTAGACAAAGCAGATT 58.359 36.000 0.00 0.00 34.32 2.40
1463 1464 6.222038 TCCTTATTCGTAGACAAAGCAGAT 57.778 37.500 0.00 0.00 34.32 2.90
1464 1465 5.654603 TCCTTATTCGTAGACAAAGCAGA 57.345 39.130 0.00 0.00 34.32 4.26
1465 1466 5.220491 GCTTCCTTATTCGTAGACAAAGCAG 60.220 44.000 0.00 0.00 34.32 4.24
1466 1467 4.630069 GCTTCCTTATTCGTAGACAAAGCA 59.370 41.667 0.00 0.00 34.32 3.91
1467 1468 4.870991 AGCTTCCTTATTCGTAGACAAAGC 59.129 41.667 0.00 0.00 34.32 3.51
1468 1469 9.745880 TTATAGCTTCCTTATTCGTAGACAAAG 57.254 33.333 0.00 0.00 34.32 2.77
1469 1470 9.745880 CTTATAGCTTCCTTATTCGTAGACAAA 57.254 33.333 0.00 0.00 34.32 2.83
1470 1471 8.910944 ACTTATAGCTTCCTTATTCGTAGACAA 58.089 33.333 0.00 0.00 34.32 3.18
1471 1472 8.461249 ACTTATAGCTTCCTTATTCGTAGACA 57.539 34.615 0.00 0.00 34.32 3.41
1475 1476 9.635520 GCATTACTTATAGCTTCCTTATTCGTA 57.364 33.333 0.00 0.00 0.00 3.43
1476 1477 8.148351 TGCATTACTTATAGCTTCCTTATTCGT 58.852 33.333 0.00 0.00 0.00 3.85
1477 1478 8.534333 TGCATTACTTATAGCTTCCTTATTCG 57.466 34.615 0.00 0.00 0.00 3.34
1479 1480 9.853177 AGTTGCATTACTTATAGCTTCCTTATT 57.147 29.630 0.00 0.00 0.00 1.40
1482 1483 9.277783 CATAGTTGCATTACTTATAGCTTCCTT 57.722 33.333 0.00 0.00 0.00 3.36
1483 1484 8.651389 TCATAGTTGCATTACTTATAGCTTCCT 58.349 33.333 0.00 0.00 0.00 3.36
1484 1485 8.833231 TCATAGTTGCATTACTTATAGCTTCC 57.167 34.615 0.00 0.00 0.00 3.46
1492 1493 9.276590 CCATGAGATTCATAGTTGCATTACTTA 57.723 33.333 0.00 0.00 34.28 2.24
1493 1494 7.994911 TCCATGAGATTCATAGTTGCATTACTT 59.005 33.333 0.00 0.00 34.28 2.24
1494 1495 7.512130 TCCATGAGATTCATAGTTGCATTACT 58.488 34.615 0.00 0.00 34.28 2.24
1495 1496 7.658982 TCTCCATGAGATTCATAGTTGCATTAC 59.341 37.037 0.00 0.00 34.28 1.89
1496 1497 7.738847 TCTCCATGAGATTCATAGTTGCATTA 58.261 34.615 0.00 0.00 34.28 1.90
1497 1498 6.598503 TCTCCATGAGATTCATAGTTGCATT 58.401 36.000 0.00 0.00 34.28 3.56
1498 1499 6.183361 ACTCTCCATGAGATTCATAGTTGCAT 60.183 38.462 0.00 0.00 45.39 3.96
1499 1500 5.129980 ACTCTCCATGAGATTCATAGTTGCA 59.870 40.000 0.00 0.00 45.39 4.08
1500 1501 5.609423 ACTCTCCATGAGATTCATAGTTGC 58.391 41.667 0.00 0.00 45.39 4.17
1501 1502 6.420306 CGAACTCTCCATGAGATTCATAGTTG 59.580 42.308 8.77 1.53 45.39 3.16
1502 1503 6.322456 TCGAACTCTCCATGAGATTCATAGTT 59.678 38.462 0.00 5.20 45.39 2.24
1503 1504 5.830457 TCGAACTCTCCATGAGATTCATAGT 59.170 40.000 0.00 0.00 45.39 2.12
1504 1505 6.324561 TCGAACTCTCCATGAGATTCATAG 57.675 41.667 0.00 0.00 45.39 2.23
1505 1506 6.071672 GGATCGAACTCTCCATGAGATTCATA 60.072 42.308 0.00 5.10 45.39 2.15
1506 1507 5.279406 GGATCGAACTCTCCATGAGATTCAT 60.279 44.000 0.00 0.00 45.39 2.57
1507 1508 4.038522 GGATCGAACTCTCCATGAGATTCA 59.961 45.833 0.00 0.00 45.39 2.57
1508 1509 4.280677 AGGATCGAACTCTCCATGAGATTC 59.719 45.833 5.61 1.57 45.39 2.52
1509 1510 4.039004 CAGGATCGAACTCTCCATGAGATT 59.961 45.833 5.61 0.00 45.39 2.40
1510 1511 3.573538 CAGGATCGAACTCTCCATGAGAT 59.426 47.826 5.61 0.00 45.39 2.75
1511 1512 2.954989 CAGGATCGAACTCTCCATGAGA 59.045 50.000 5.61 0.00 45.39 3.27
1513 1514 2.034878 CCAGGATCGAACTCTCCATGA 58.965 52.381 5.61 0.00 33.75 3.07
1514 1515 1.539929 GCCAGGATCGAACTCTCCATG 60.540 57.143 5.61 1.63 33.75 3.66
1515 1516 0.755686 GCCAGGATCGAACTCTCCAT 59.244 55.000 5.61 0.00 33.75 3.41
1516 1517 0.324738 AGCCAGGATCGAACTCTCCA 60.325 55.000 5.61 0.00 33.75 3.86
1517 1518 0.387565 GAGCCAGGATCGAACTCTCC 59.612 60.000 0.00 0.00 0.00 3.71
1518 1519 1.066908 CTGAGCCAGGATCGAACTCTC 59.933 57.143 0.00 0.00 0.00 3.20
1519 1520 1.110442 CTGAGCCAGGATCGAACTCT 58.890 55.000 0.00 0.00 0.00 3.24
1520 1521 3.657956 CTGAGCCAGGATCGAACTC 57.342 57.895 0.00 0.00 0.00 3.01
1530 1531 1.088340 CAGCGTTCATCCTGAGCCAG 61.088 60.000 0.00 0.00 0.00 4.85
1531 1532 1.078918 CAGCGTTCATCCTGAGCCA 60.079 57.895 0.00 0.00 0.00 4.75
1532 1533 1.817099 CCAGCGTTCATCCTGAGCC 60.817 63.158 0.00 0.00 0.00 4.70
1533 1534 2.467826 GCCAGCGTTCATCCTGAGC 61.468 63.158 0.00 0.00 0.00 4.26
1534 1535 2.169789 CGCCAGCGTTCATCCTGAG 61.170 63.158 3.35 0.00 34.35 3.35
1535 1536 2.125552 CGCCAGCGTTCATCCTGA 60.126 61.111 3.35 0.00 34.35 3.86
1536 1537 3.197790 CCGCCAGCGTTCATCCTG 61.198 66.667 11.55 0.00 37.81 3.86
1546 1547 2.102946 GTTAAGCATGCCGCCAGC 59.897 61.111 15.66 0.00 44.04 4.85
1547 1548 1.137404 GTGTTAAGCATGCCGCCAG 59.863 57.895 15.66 0.00 44.04 4.85
1548 1549 0.964860 ATGTGTTAAGCATGCCGCCA 60.965 50.000 15.66 3.29 44.04 5.69
1549 1550 0.526096 CATGTGTTAAGCATGCCGCC 60.526 55.000 15.66 0.29 44.04 6.13
1550 1551 2.948093 CATGTGTTAAGCATGCCGC 58.052 52.632 15.66 6.16 37.50 6.53
1554 1555 3.120234 TCGACTTGCATGTGTTAAGCATG 60.120 43.478 10.37 12.96 44.62 4.06
1555 1556 3.073678 TCGACTTGCATGTGTTAAGCAT 58.926 40.909 10.37 0.00 38.19 3.79
1556 1557 2.488952 TCGACTTGCATGTGTTAAGCA 58.511 42.857 10.37 0.00 36.32 3.91
1557 1558 3.226347 GTTCGACTTGCATGTGTTAAGC 58.774 45.455 10.37 0.00 0.00 3.09
1558 1559 3.469629 CGTTCGACTTGCATGTGTTAAG 58.530 45.455 10.37 0.00 0.00 1.85
1559 1560 2.222213 CCGTTCGACTTGCATGTGTTAA 59.778 45.455 10.37 0.00 0.00 2.01
1560 1561 1.795872 CCGTTCGACTTGCATGTGTTA 59.204 47.619 10.37 0.00 0.00 2.41
1561 1562 0.586319 CCGTTCGACTTGCATGTGTT 59.414 50.000 10.37 0.00 0.00 3.32
1562 1563 1.227999 CCCGTTCGACTTGCATGTGT 61.228 55.000 10.37 0.00 0.00 3.72
1563 1564 0.948623 TCCCGTTCGACTTGCATGTG 60.949 55.000 10.37 3.24 0.00 3.21
1564 1565 0.250124 TTCCCGTTCGACTTGCATGT 60.250 50.000 4.68 4.68 0.00 3.21
1565 1566 0.443869 CTTCCCGTTCGACTTGCATG 59.556 55.000 0.00 0.00 0.00 4.06
1566 1567 0.034896 ACTTCCCGTTCGACTTGCAT 59.965 50.000 0.00 0.00 0.00 3.96
1567 1568 0.878523 CACTTCCCGTTCGACTTGCA 60.879 55.000 0.00 0.00 0.00 4.08
1568 1569 1.566018 CCACTTCCCGTTCGACTTGC 61.566 60.000 0.00 0.00 0.00 4.01
1569 1570 0.249741 ACCACTTCCCGTTCGACTTG 60.250 55.000 0.00 0.00 0.00 3.16
1570 1571 0.249741 CACCACTTCCCGTTCGACTT 60.250 55.000 0.00 0.00 0.00 3.01
1571 1572 1.366366 CACCACTTCCCGTTCGACT 59.634 57.895 0.00 0.00 0.00 4.18
1572 1573 0.531311 AACACCACTTCCCGTTCGAC 60.531 55.000 0.00 0.00 0.00 4.20
1573 1574 0.178533 AAACACCACTTCCCGTTCGA 59.821 50.000 0.00 0.00 0.00 3.71
1574 1575 0.584876 GAAACACCACTTCCCGTTCG 59.415 55.000 0.00 0.00 0.00 3.95
1575 1576 0.949397 GGAAACACCACTTCCCGTTC 59.051 55.000 0.00 0.00 37.03 3.95
1576 1577 0.256464 TGGAAACACCACTTCCCGTT 59.744 50.000 0.00 0.00 44.64 4.44
1577 1578 0.179029 CTGGAAACACCACTTCCCGT 60.179 55.000 0.00 0.00 44.64 5.28
1578 1579 0.179029 ACTGGAAACACCACTTCCCG 60.179 55.000 0.00 0.00 44.64 5.14
1579 1580 1.318576 CACTGGAAACACCACTTCCC 58.681 55.000 0.00 0.00 44.64 3.97
1580 1581 1.318576 CCACTGGAAACACCACTTCC 58.681 55.000 0.00 0.00 44.64 3.46
1581 1582 0.668535 GCCACTGGAAACACCACTTC 59.331 55.000 0.00 0.00 44.64 3.01
1582 1583 1.101049 CGCCACTGGAAACACCACTT 61.101 55.000 0.00 0.00 44.64 3.16
1583 1584 1.525995 CGCCACTGGAAACACCACT 60.526 57.895 0.00 0.00 44.64 4.00
1584 1585 1.098712 TTCGCCACTGGAAACACCAC 61.099 55.000 0.00 0.00 44.64 4.16
1586 1587 0.310854 CTTTCGCCACTGGAAACACC 59.689 55.000 0.00 0.00 35.60 4.16
1587 1588 1.002792 GACTTTCGCCACTGGAAACAC 60.003 52.381 0.00 0.00 35.60 3.32
1588 1589 1.305201 GACTTTCGCCACTGGAAACA 58.695 50.000 0.00 0.00 39.59 2.83
1589 1590 0.234884 CGACTTTCGCCACTGGAAAC 59.765 55.000 0.00 0.00 31.14 2.78
1590 1591 2.612200 CGACTTTCGCCACTGGAAA 58.388 52.632 0.00 0.00 31.14 3.13
1591 1592 4.354155 CGACTTTCGCCACTGGAA 57.646 55.556 0.00 0.00 31.14 3.53
2085 2089 7.064728 ACGTATTCAATAAGCAAAAGGAGAGAC 59.935 37.037 0.00 0.00 0.00 3.36
2131 2135 4.347453 GTGGCTTTGCACTGCGGG 62.347 66.667 0.00 0.00 0.00 6.13
2132 2136 4.347453 GGTGGCTTTGCACTGCGG 62.347 66.667 4.34 0.00 0.00 5.69
2133 2137 4.688419 CGGTGGCTTTGCACTGCG 62.688 66.667 4.34 0.00 0.00 5.18
2134 2138 2.146073 ATTCGGTGGCTTTGCACTGC 62.146 55.000 1.80 1.80 0.00 4.40
2135 2139 1.135689 GTATTCGGTGGCTTTGCACTG 60.136 52.381 0.00 0.00 0.00 3.66
2136 2140 1.165270 GTATTCGGTGGCTTTGCACT 58.835 50.000 0.00 0.00 0.00 4.40
2137 2141 0.179200 CGTATTCGGTGGCTTTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
2138 2142 0.320858 TCGTATTCGGTGGCTTTGCA 60.321 50.000 0.00 0.00 37.69 4.08
2139 2143 0.800012 TTCGTATTCGGTGGCTTTGC 59.200 50.000 0.00 0.00 37.69 3.68
2140 2144 2.343101 TCTTCGTATTCGGTGGCTTTG 58.657 47.619 0.00 0.00 37.69 2.77
2141 2145 2.754946 TCTTCGTATTCGGTGGCTTT 57.245 45.000 0.00 0.00 37.69 3.51
2142 2146 2.431057 AGATCTTCGTATTCGGTGGCTT 59.569 45.455 0.00 0.00 37.69 4.35
2143 2147 2.032620 AGATCTTCGTATTCGGTGGCT 58.967 47.619 0.00 0.00 37.69 4.75
2144 2148 2.128035 CAGATCTTCGTATTCGGTGGC 58.872 52.381 0.00 0.00 37.69 5.01
2145 2149 3.372954 GACAGATCTTCGTATTCGGTGG 58.627 50.000 0.00 0.00 37.69 4.61
2146 2150 3.372954 GGACAGATCTTCGTATTCGGTG 58.627 50.000 0.00 0.00 37.69 4.94
2147 2151 2.033049 CGGACAGATCTTCGTATTCGGT 59.967 50.000 0.00 0.00 37.69 4.69
2148 2152 2.033049 ACGGACAGATCTTCGTATTCGG 59.967 50.000 12.14 2.13 37.69 4.30
2149 2153 3.036633 CACGGACAGATCTTCGTATTCG 58.963 50.000 13.06 7.83 34.31 3.34
2150 2154 3.066342 TCCACGGACAGATCTTCGTATTC 59.934 47.826 13.06 0.00 34.31 1.75
2151 2155 3.021695 TCCACGGACAGATCTTCGTATT 58.978 45.455 13.06 0.00 34.31 1.89
2152 2156 2.619177 CTCCACGGACAGATCTTCGTAT 59.381 50.000 13.06 0.00 34.31 3.06
2153 2157 2.014857 CTCCACGGACAGATCTTCGTA 58.985 52.381 13.06 1.89 34.31 3.43
2154 2158 0.811915 CTCCACGGACAGATCTTCGT 59.188 55.000 9.02 9.02 36.19 3.85
2155 2159 1.095600 TCTCCACGGACAGATCTTCG 58.904 55.000 0.00 0.04 0.00 3.79
2156 2160 3.594603 TTTCTCCACGGACAGATCTTC 57.405 47.619 0.00 0.00 0.00 2.87
2157 2161 3.325135 ACTTTTCTCCACGGACAGATCTT 59.675 43.478 0.00 0.00 0.00 2.40
2158 2162 2.900546 ACTTTTCTCCACGGACAGATCT 59.099 45.455 0.00 0.00 0.00 2.75
2159 2163 3.056465 AGACTTTTCTCCACGGACAGATC 60.056 47.826 0.00 0.00 0.00 2.75
2160 2164 2.900546 AGACTTTTCTCCACGGACAGAT 59.099 45.455 0.00 0.00 0.00 2.90
2161 2165 2.296471 GAGACTTTTCTCCACGGACAGA 59.704 50.000 0.00 0.00 42.42 3.41
2162 2166 2.678324 GAGACTTTTCTCCACGGACAG 58.322 52.381 0.00 0.00 42.42 3.51
2163 2167 2.814280 GAGACTTTTCTCCACGGACA 57.186 50.000 0.00 0.00 42.42 4.02
2172 2176 1.700186 GGTCCAGGGTGAGACTTTTCT 59.300 52.381 0.00 0.00 33.39 2.52
2173 2177 1.608283 CGGTCCAGGGTGAGACTTTTC 60.608 57.143 0.00 0.00 33.39 2.29
2174 2178 0.396811 CGGTCCAGGGTGAGACTTTT 59.603 55.000 0.00 0.00 33.39 2.27
2175 2179 2.058675 CGGTCCAGGGTGAGACTTT 58.941 57.895 0.00 0.00 33.39 2.66
2176 2180 2.584391 GCGGTCCAGGGTGAGACTT 61.584 63.158 0.00 0.00 33.39 3.01
2177 2181 2.997897 GCGGTCCAGGGTGAGACT 60.998 66.667 0.00 0.00 33.39 3.24
2178 2182 2.579684 GATGCGGTCCAGGGTGAGAC 62.580 65.000 0.00 0.00 0.00 3.36
2179 2183 2.284625 ATGCGGTCCAGGGTGAGA 60.285 61.111 0.00 0.00 0.00 3.27
2180 2184 2.187946 GATGCGGTCCAGGGTGAG 59.812 66.667 0.00 0.00 0.00 3.51
2181 2185 3.770040 CGATGCGGTCCAGGGTGA 61.770 66.667 0.00 0.00 0.00 4.02
2182 2186 3.605749 AACGATGCGGTCCAGGGTG 62.606 63.158 0.00 0.00 0.00 4.61
2183 2187 3.319198 AACGATGCGGTCCAGGGT 61.319 61.111 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.