Multiple sequence alignment - TraesCS7B01G358800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G358800 chr7B 100.000 5884 0 0 1 5884 620658918 620664801 0.000000e+00 10866.0
1 TraesCS7B01G358800 chr7B 95.349 860 29 9 5027 5881 103880687 103881540 0.000000e+00 1356.0
2 TraesCS7B01G358800 chr7B 96.023 176 6 1 451 626 678620613 678620787 9.650000e-73 285.0
3 TraesCS7B01G358800 chr7B 77.778 135 17 4 2853 2974 540068329 540068195 2.940000e-08 71.3
4 TraesCS7B01G358800 chr7A 91.614 4138 219 55 888 4980 652722152 652718098 0.000000e+00 5602.0
5 TraesCS7B01G358800 chr7A 83.791 401 44 14 44 438 652722901 652722516 1.560000e-95 361.0
6 TraesCS7B01G358800 chr7A 97.633 169 3 1 451 618 426576435 426576603 7.460000e-74 289.0
7 TraesCS7B01G358800 chr7D 88.743 4184 276 89 888 4968 566552183 566548092 0.000000e+00 4937.0
8 TraesCS7B01G358800 chr7D 89.378 386 38 3 3 386 566552917 566552533 3.190000e-132 483.0
9 TraesCS7B01G358800 chr7D 97.222 36 1 0 4986 5021 566543889 566543854 1.770000e-05 62.1
10 TraesCS7B01G358800 chr6A 87.077 1478 149 26 2975 4435 115829587 115828135 0.000000e+00 1633.0
11 TraesCS7B01G358800 chr6A 88.223 951 70 19 1023 1972 115831441 115830532 0.000000e+00 1098.0
12 TraesCS7B01G358800 chr6A 85.839 918 80 29 1967 2849 115830484 115829582 0.000000e+00 929.0
13 TraesCS7B01G358800 chr6A 85.847 431 49 7 4461 4890 115827873 115827454 1.160000e-121 448.0
14 TraesCS7B01G358800 chr6B 86.782 1445 154 25 3006 4435 179989701 179988279 0.000000e+00 1576.0
15 TraesCS7B01G358800 chr6B 96.065 864 26 8 5021 5881 179337941 179338799 0.000000e+00 1400.0
16 TraesCS7B01G358800 chr6B 95.392 868 34 5 5021 5884 302887006 302886141 0.000000e+00 1376.0
17 TraesCS7B01G358800 chr6B 87.277 951 77 24 1023 1972 179991768 179990861 0.000000e+00 1046.0
18 TraesCS7B01G358800 chr6B 85.512 918 83 27 1967 2849 179990813 179989911 0.000000e+00 913.0
19 TraesCS7B01G358800 chr6B 86.543 431 46 7 4461 4890 179988020 179987601 1.150000e-126 464.0
20 TraesCS7B01G358800 chr6B 89.823 226 19 3 2975 3197 179989916 179989692 2.680000e-73 287.0
21 TraesCS7B01G358800 chr6B 100.000 36 0 0 2859 2894 103916979 103917014 3.810000e-07 67.6
22 TraesCS7B01G358800 chr6B 100.000 36 0 0 2859 2894 166439828 166439863 3.810000e-07 67.6
23 TraesCS7B01G358800 chr6D 87.126 1336 135 18 3117 4435 96825409 96824094 0.000000e+00 1480.0
24 TraesCS7B01G358800 chr6D 87.841 954 70 21 1023 1972 96827411 96826500 0.000000e+00 1077.0
25 TraesCS7B01G358800 chr6D 87.732 701 55 17 1967 2646 96826452 96825762 0.000000e+00 789.0
26 TraesCS7B01G358800 chr6D 85.779 443 52 7 4450 4890 96823845 96823412 5.370000e-125 459.0
27 TraesCS7B01G358800 chr1B 95.857 869 28 6 5021 5884 91836101 91835236 0.000000e+00 1399.0
28 TraesCS7B01G358800 chr1B 95.349 43 1 1 2852 2894 321324257 321324298 3.810000e-07 67.6
29 TraesCS7B01G358800 chr2B 95.632 870 31 5 5021 5884 80053523 80052655 0.000000e+00 1389.0
30 TraesCS7B01G358800 chr2B 94.931 868 32 10 5022 5884 646071149 646070289 0.000000e+00 1349.0
31 TraesCS7B01G358800 chr2B 98.182 165 2 1 451 615 314771408 314771571 2.680000e-73 287.0
32 TraesCS7B01G358800 chr5B 95.287 870 32 7 5021 5884 24106353 24105487 0.000000e+00 1371.0
33 TraesCS7B01G358800 chr3B 95.497 866 26 11 5021 5881 319822505 319823362 0.000000e+00 1371.0
34 TraesCS7B01G358800 chr3B 89.037 301 18 11 4239 4535 797640606 797640895 5.610000e-95 359.0
35 TraesCS7B01G358800 chr3B 98.182 165 1 2 451 615 106897749 106897587 2.680000e-73 287.0
36 TraesCS7B01G358800 chr4B 95.023 864 34 9 5021 5881 626635919 626636776 0.000000e+00 1349.0
37 TraesCS7B01G358800 chr4B 100.000 36 0 0 2859 2894 97738487 97738522 3.810000e-07 67.6
38 TraesCS7B01G358800 chr4B 100.000 36 0 0 2859 2894 148880035 148880070 3.810000e-07 67.6
39 TraesCS7B01G358800 chr4B 95.122 41 1 1 2854 2894 415874273 415874234 4.920000e-06 63.9
40 TraesCS7B01G358800 chr3A 91.429 245 11 5 4239 4482 724897311 724897546 1.580000e-85 327.0
41 TraesCS7B01G358800 chr3A 95.977 174 4 3 451 624 33589110 33588940 4.490000e-71 279.0
42 TraesCS7B01G358800 chr5D 98.182 165 3 0 451 615 319691576 319691412 7.460000e-74 289.0
43 TraesCS7B01G358800 chr4A 96.552 174 3 3 451 623 231287809 231287638 9.650000e-73 285.0
44 TraesCS7B01G358800 chr4A 98.148 162 1 2 451 612 479322829 479322988 1.250000e-71 281.0
45 TraesCS7B01G358800 chr1A 97.605 167 2 2 451 617 276573442 276573278 9.650000e-73 285.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G358800 chr7B 620658918 620664801 5883 False 10866.00 10866 100.0000 1 5884 1 chr7B.!!$F2 5883
1 TraesCS7B01G358800 chr7B 103880687 103881540 853 False 1356.00 1356 95.3490 5027 5881 1 chr7B.!!$F1 854
2 TraesCS7B01G358800 chr7A 652718098 652722901 4803 True 2981.50 5602 87.7025 44 4980 2 chr7A.!!$R1 4936
3 TraesCS7B01G358800 chr7D 566548092 566552917 4825 True 2710.00 4937 89.0605 3 4968 2 chr7D.!!$R2 4965
4 TraesCS7B01G358800 chr6A 115827454 115831441 3987 True 1027.00 1633 86.7465 1023 4890 4 chr6A.!!$R1 3867
5 TraesCS7B01G358800 chr6B 179337941 179338799 858 False 1400.00 1400 96.0650 5021 5881 1 chr6B.!!$F3 860
6 TraesCS7B01G358800 chr6B 302886141 302887006 865 True 1376.00 1376 95.3920 5021 5884 1 chr6B.!!$R1 863
7 TraesCS7B01G358800 chr6B 179987601 179991768 4167 True 857.20 1576 87.1874 1023 4890 5 chr6B.!!$R2 3867
8 TraesCS7B01G358800 chr6D 96823412 96827411 3999 True 951.25 1480 87.1195 1023 4890 4 chr6D.!!$R1 3867
9 TraesCS7B01G358800 chr1B 91835236 91836101 865 True 1399.00 1399 95.8570 5021 5884 1 chr1B.!!$R1 863
10 TraesCS7B01G358800 chr2B 80052655 80053523 868 True 1389.00 1389 95.6320 5021 5884 1 chr2B.!!$R1 863
11 TraesCS7B01G358800 chr2B 646070289 646071149 860 True 1349.00 1349 94.9310 5022 5884 1 chr2B.!!$R2 862
12 TraesCS7B01G358800 chr5B 24105487 24106353 866 True 1371.00 1371 95.2870 5021 5884 1 chr5B.!!$R1 863
13 TraesCS7B01G358800 chr3B 319822505 319823362 857 False 1371.00 1371 95.4970 5021 5881 1 chr3B.!!$F1 860
14 TraesCS7B01G358800 chr4B 626635919 626636776 857 False 1349.00 1349 95.0230 5021 5881 1 chr4B.!!$F3 860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 495 0.036164 TTATGGCGCAGTGGTGAAGT 59.964 50.000 10.83 0.0 0.00 3.01 F
478 507 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.0 34.10 3.16 F
523 552 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.0 33.79 3.16 F
566 595 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.0 0.00 4.95 F
585 614 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.0 41.52 2.85 F
595 624 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.0 34.99 4.45 F
596 625 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.0 34.99 4.51 F
600 629 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.0 0.00 3.41 F
602 631 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.0 0.00 4.02 F
2815 3091 0.677288 CGGAATACAGGGATACGCCA 59.323 55.000 0.00 0.0 38.95 5.69 F
2914 3229 0.107410 TTCTGACCAAACCGCACACT 60.107 50.000 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1780 0.035881 CTCTGCTCTCCCTGCAACAA 59.964 55.000 0.00 0.00 40.13 2.83 R
1770 1930 0.878086 GCGCTCTACCCAGAAGCATC 60.878 60.000 0.00 0.00 35.64 3.91 R
1881 2041 1.150536 ACCAACCGTGCATTCAGGT 59.849 52.632 0.00 0.00 40.50 4.00 R
2072 2289 2.224426 TGTAAACGACAGGACCAGCATT 60.224 45.455 0.00 0.00 32.86 3.56 R
2582 2813 2.053244 ACCACATTCCCAATTGGCAAA 58.947 42.857 19.75 15.04 31.76 3.68 R
2681 2948 9.323985 CATCTTTTTGTTTCCCTTTTTATGTCA 57.676 29.630 0.00 0.00 0.00 3.58 R
2682 2949 9.541143 TCATCTTTTTGTTTCCCTTTTTATGTC 57.459 29.630 0.00 0.00 0.00 3.06 R
2815 3091 5.310594 ACTTGGGGATACATACACATATGCT 59.689 40.000 1.58 0.00 41.83 3.79 R
2821 3114 7.446106 AAAGATACTTGGGGATACATACACA 57.554 36.000 0.00 0.00 39.74 3.72 R
4772 5610 0.473755 TCTGTCTGCAACCACCATGT 59.526 50.000 0.00 0.00 0.00 3.21 R
4989 5828 0.475906 ATAAGTGGCTGGAGATGGGC 59.524 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.562298 TGATTCCTTTGCCAATGTGGAC 59.438 45.455 0.00 0.00 40.96 4.02
52 53 3.005684 TGCCAATGTGGACAAGTGAAATC 59.994 43.478 0.00 0.00 40.96 2.17
55 56 4.321452 CCAATGTGGACAAGTGAAATCTGG 60.321 45.833 0.00 0.00 40.96 3.86
61 62 0.529378 CAAGTGAAATCTGGCCTGGC 59.471 55.000 11.05 11.05 0.00 4.85
159 163 6.638063 CCAAATAATGTGTATCGAAGCAATGG 59.362 38.462 0.00 0.00 0.00 3.16
163 167 3.000041 TGTGTATCGAAGCAATGGTCAC 59.000 45.455 0.00 0.00 0.00 3.67
204 208 3.350833 AGATGACAGTTGAAAGGCCATC 58.649 45.455 5.01 3.05 0.00 3.51
206 210 4.225942 AGATGACAGTTGAAAGGCCATCTA 59.774 41.667 5.01 0.00 37.91 1.98
238 242 1.270625 TGTTCTTGGGGTCGATGACAC 60.271 52.381 0.00 0.00 34.83 3.67
239 243 1.052617 TTCTTGGGGTCGATGACACA 58.947 50.000 1.18 0.00 37.77 3.72
245 249 2.213499 GGGGTCGATGACACATGATTC 58.787 52.381 0.00 0.00 37.77 2.52
318 322 0.548926 TCAGGGCCCATTACCACTCA 60.549 55.000 27.56 0.00 0.00 3.41
325 329 4.447762 GGGCCCATTACCACTCATTAATCT 60.448 45.833 19.95 0.00 0.00 2.40
326 330 4.520492 GGCCCATTACCACTCATTAATCTG 59.480 45.833 0.00 0.00 0.00 2.90
331 335 8.571336 CCCATTACCACTCATTAATCTGATTTC 58.429 37.037 8.38 0.00 0.00 2.17
332 336 8.285394 CCATTACCACTCATTAATCTGATTTCG 58.715 37.037 8.38 0.00 0.00 3.46
354 358 5.047943 TCGTTTTCTTTTGTGTCCTTTCCAA 60.048 36.000 0.00 0.00 0.00 3.53
370 374 5.451381 CCTTTCCAAGTTTTAAGGGTGTGTC 60.451 44.000 0.00 0.00 34.77 3.67
374 378 6.424883 TCCAAGTTTTAAGGGTGTGTCTTAA 58.575 36.000 0.00 0.00 35.61 1.85
375 379 7.064229 TCCAAGTTTTAAGGGTGTGTCTTAAT 58.936 34.615 0.00 0.00 36.81 1.40
376 380 7.229907 TCCAAGTTTTAAGGGTGTGTCTTAATC 59.770 37.037 0.00 0.00 36.81 1.75
377 381 7.230712 CCAAGTTTTAAGGGTGTGTCTTAATCT 59.769 37.037 0.00 0.00 36.81 2.40
380 396 5.836024 TTAAGGGTGTGTCTTAATCTGGT 57.164 39.130 0.00 0.00 33.37 4.00
386 402 5.300792 GGGTGTGTCTTAATCTGGTTTTTCA 59.699 40.000 0.00 0.00 0.00 2.69
398 414 8.846943 AATCTGGTTTTTCATTTTATTCCCAC 57.153 30.769 0.00 0.00 0.00 4.61
401 430 8.147704 TCTGGTTTTTCATTTTATTCCCACTTC 58.852 33.333 0.00 0.00 0.00 3.01
403 432 9.148879 TGGTTTTTCATTTTATTCCCACTTCTA 57.851 29.630 0.00 0.00 0.00 2.10
417 446 6.472887 TCCCACTTCTATCTTTTCATTTCGT 58.527 36.000 0.00 0.00 0.00 3.85
426 455 8.721478 TCTATCTTTTCATTTCGTTTCTTCCAG 58.279 33.333 0.00 0.00 0.00 3.86
463 492 1.610363 TTTTTATGGCGCAGTGGTGA 58.390 45.000 10.83 0.00 0.00 4.02
464 493 1.610363 TTTTATGGCGCAGTGGTGAA 58.390 45.000 10.83 0.00 0.00 3.18
465 494 1.164411 TTTATGGCGCAGTGGTGAAG 58.836 50.000 10.83 0.00 0.00 3.02
466 495 0.036164 TTATGGCGCAGTGGTGAAGT 59.964 50.000 10.83 0.00 0.00 3.01
467 496 0.391130 TATGGCGCAGTGGTGAAGTC 60.391 55.000 10.83 0.00 0.00 3.01
468 497 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
469 498 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
470 499 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
471 500 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
472 501 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
473 502 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
474 503 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
475 504 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
476 505 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
477 506 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
478 507 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
479 508 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
480 509 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
481 510 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
482 511 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
483 512 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
484 513 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
485 514 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
486 515 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
487 516 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
488 517 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
489 518 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
490 519 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
491 520 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
492 521 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
493 522 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
494 523 1.228245 TTGTGCCAAGAGGTCCTGC 60.228 57.895 0.00 0.00 37.19 4.85
495 524 2.743928 GTGCCAAGAGGTCCTGCG 60.744 66.667 0.00 0.00 37.19 5.18
496 525 3.241530 TGCCAAGAGGTCCTGCGT 61.242 61.111 0.00 0.00 37.19 5.24
497 526 2.032681 GCCAAGAGGTCCTGCGTT 59.967 61.111 0.00 0.00 37.19 4.84
498 527 2.035442 GCCAAGAGGTCCTGCGTTC 61.035 63.158 0.00 0.00 37.19 3.95
499 528 1.738099 CCAAGAGGTCCTGCGTTCG 60.738 63.158 0.00 0.00 0.00 3.95
500 529 1.289066 CAAGAGGTCCTGCGTTCGA 59.711 57.895 0.00 0.00 0.00 3.71
501 530 0.319555 CAAGAGGTCCTGCGTTCGAA 60.320 55.000 0.00 0.00 0.00 3.71
502 531 0.319641 AAGAGGTCCTGCGTTCGAAC 60.320 55.000 18.47 18.47 0.00 3.95
503 532 1.737008 GAGGTCCTGCGTTCGAACC 60.737 63.158 22.07 14.94 0.00 3.62
504 533 2.029964 GGTCCTGCGTTCGAACCA 59.970 61.111 22.07 18.34 0.00 3.67
505 534 2.027625 GGTCCTGCGTTCGAACCAG 61.028 63.158 26.72 26.72 0.00 4.00
506 535 2.357034 TCCTGCGTTCGAACCAGC 60.357 61.111 27.60 23.35 0.00 4.85
507 536 3.423154 CCTGCGTTCGAACCAGCC 61.423 66.667 27.60 14.83 0.00 4.85
508 537 2.357517 CTGCGTTCGAACCAGCCT 60.358 61.111 24.25 0.00 0.00 4.58
509 538 2.357034 TGCGTTCGAACCAGCCTC 60.357 61.111 22.07 5.71 0.00 4.70
510 539 2.048127 GCGTTCGAACCAGCCTCT 60.048 61.111 22.07 0.00 0.00 3.69
511 540 2.095252 GCGTTCGAACCAGCCTCTC 61.095 63.158 22.07 0.00 0.00 3.20
512 541 1.587054 CGTTCGAACCAGCCTCTCT 59.413 57.895 22.07 0.00 0.00 3.10
513 542 0.734253 CGTTCGAACCAGCCTCTCTG 60.734 60.000 22.07 0.54 42.49 3.35
514 543 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
515 544 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
516 545 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
517 546 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
518 547 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
519 548 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
520 549 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
521 550 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
522 551 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
523 552 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
524 553 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
525 554 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
526 555 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
536 565 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
537 566 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
538 567 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
539 568 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
540 569 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
541 570 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
542 571 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
543 572 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
544 573 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
545 574 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
546 575 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
547 576 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
548 577 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
549 578 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
550 579 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
551 580 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
552 581 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
553 582 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
554 583 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
555 584 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
556 585 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
557 586 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
558 587 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
559 588 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
560 589 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
561 590 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
562 591 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
563 592 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
564 593 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
565 594 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
566 595 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
567 596 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
568 597 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
570 599 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
571 600 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
572 601 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
573 602 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
574 603 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
575 604 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
576 605 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
583 612 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
584 613 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
585 614 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
586 615 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
587 616 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
588 617 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
589 618 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
590 619 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
591 620 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
592 621 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
593 622 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
594 623 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
595 624 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
596 625 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
597 626 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
598 627 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
599 628 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
600 629 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
601 630 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
602 631 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
603 632 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
604 633 2.024369 TCTATGCACTGGGTCTGTCCTA 60.024 50.000 0.00 0.00 36.25 2.94
605 634 1.885049 ATGCACTGGGTCTGTCCTAT 58.115 50.000 0.00 0.00 36.25 2.57
606 635 1.195115 TGCACTGGGTCTGTCCTATC 58.805 55.000 0.00 0.00 36.25 2.08
607 636 1.273267 TGCACTGGGTCTGTCCTATCT 60.273 52.381 0.00 0.00 36.25 1.98
608 637 1.834263 GCACTGGGTCTGTCCTATCTT 59.166 52.381 0.00 0.00 36.25 2.40
609 638 2.237392 GCACTGGGTCTGTCCTATCTTT 59.763 50.000 0.00 0.00 36.25 2.52
610 639 3.307762 GCACTGGGTCTGTCCTATCTTTT 60.308 47.826 0.00 0.00 36.25 2.27
611 640 4.807643 GCACTGGGTCTGTCCTATCTTTTT 60.808 45.833 0.00 0.00 36.25 1.94
681 753 9.970395 TCATGATGAGCATTTTTCAAATATACC 57.030 29.630 0.00 0.00 34.15 2.73
720 792 1.960417 TCTGTTGATGTTTCCGCACA 58.040 45.000 0.00 0.00 0.00 4.57
727 799 2.223456 TGATGTTTCCGCACACAAACAG 60.223 45.455 3.84 0.00 43.81 3.16
738 810 4.437495 CGCACACAAACAGTTTTCAGTATG 59.563 41.667 0.00 0.00 37.54 2.39
743 815 9.515020 CACACAAACAGTTTTCAGTATGTAAAT 57.485 29.630 0.00 0.00 37.68 1.40
857 976 2.233566 TGCCAGAATCCAGCCCACT 61.234 57.895 0.00 0.00 0.00 4.00
875 994 4.918588 CCACTTAGGGACCTAAATTGTGT 58.081 43.478 19.28 9.72 37.97 3.72
876 995 4.941873 CCACTTAGGGACCTAAATTGTGTC 59.058 45.833 19.28 0.00 37.97 3.67
877 996 4.941873 CACTTAGGGACCTAAATTGTGTCC 59.058 45.833 11.65 11.14 46.31 4.02
884 1003 5.368989 GGACCTAAATTGTGTCCATAGAGG 58.631 45.833 13.60 0.00 46.29 3.69
885 1004 4.781934 ACCTAAATTGTGTCCATAGAGGC 58.218 43.478 0.00 0.00 37.29 4.70
886 1005 4.137543 CCTAAATTGTGTCCATAGAGGCC 58.862 47.826 0.00 0.00 37.29 5.19
896 1015 1.428869 CATAGAGGCCCAGCTAACCT 58.571 55.000 0.00 1.13 36.19 3.50
901 1020 3.127533 GCCCAGCTAACCTGCACG 61.128 66.667 0.00 0.00 40.36 5.34
907 1026 3.065306 CTAACCTGCACGGACCCA 58.935 61.111 8.91 0.00 36.31 4.51
920 1039 4.994756 ACCCAAAGCCCAAGCCGG 62.995 66.667 0.00 0.00 41.25 6.13
929 1048 1.365999 CCCAAGCCGGTCAAAAACC 59.634 57.895 1.90 0.00 45.45 3.27
944 1063 3.430333 AAAACCCAACGAATGTGACAC 57.570 42.857 0.00 0.00 0.00 3.67
947 1066 3.410631 ACCCAACGAATGTGACACATA 57.589 42.857 21.10 0.00 37.97 2.29
950 1069 4.764823 ACCCAACGAATGTGACACATATTT 59.235 37.500 21.10 11.51 37.97 1.40
955 1074 4.566759 ACGAATGTGACACATATTTCCTCG 59.433 41.667 25.41 25.41 37.97 4.63
957 1076 5.463392 CGAATGTGACACATATTTCCTCGAT 59.537 40.000 23.92 6.93 37.97 3.59
958 1077 6.346120 CGAATGTGACACATATTTCCTCGATC 60.346 42.308 23.92 13.19 37.97 3.69
961 1080 6.348498 TGTGACACATATTTCCTCGATCAAT 58.652 36.000 3.56 0.00 0.00 2.57
1132 1256 1.880340 GGAGTTCATCGAGCAGGCG 60.880 63.158 0.00 0.00 0.00 5.52
1230 1369 2.041922 CTCGATCCCCTCCCCACA 60.042 66.667 0.00 0.00 0.00 4.17
1250 1390 3.075005 CCCCTTCTCCTTCCGCGA 61.075 66.667 8.23 0.00 0.00 5.87
1268 1408 1.282930 GACCGACGGTTTGAGCTCAC 61.283 60.000 22.69 5.76 35.25 3.51
1434 1574 4.124351 CCGAACGAGGGCACGCTA 62.124 66.667 0.00 0.00 36.70 4.26
1455 1595 3.034635 AGCCATATTCACCGAGTTCTCT 58.965 45.455 0.00 0.00 0.00 3.10
1485 1625 2.759114 CCTGCCTTTGAGCCAGGA 59.241 61.111 0.00 0.00 34.74 3.86
1512 1652 2.529619 GGAAGCGGCGATTGAGCTC 61.530 63.158 17.76 6.82 40.78 4.09
1527 1667 2.740714 GCTCGGCCGTGTCATTGAC 61.741 63.158 27.15 9.93 0.00 3.18
1544 1687 1.229082 ACCGTGGCCTAAGGTCTCA 60.229 57.895 3.32 0.00 36.30 3.27
1561 1707 2.027192 TCTCAGGATGGCTGTTTGGTAC 60.027 50.000 0.00 0.00 36.16 3.34
1563 1709 2.086869 CAGGATGGCTGTTTGGTACTG 58.913 52.381 0.00 0.00 0.00 2.74
1582 1730 5.491635 ACTGTTTCTTTTTGTCAGAGAGC 57.508 39.130 0.00 0.00 0.00 4.09
1602 1751 6.064717 AGAGCTGAAGTGTGGAGTTTAATTT 58.935 36.000 0.00 0.00 0.00 1.82
1616 1765 6.808704 GGAGTTTAATTTGGATTCACTTCTGC 59.191 38.462 0.00 0.00 0.00 4.26
1625 1780 2.356313 CACTTCTGCTCGGTGCGT 60.356 61.111 0.00 0.00 46.63 5.24
1626 1781 1.956170 CACTTCTGCTCGGTGCGTT 60.956 57.895 0.00 0.00 46.63 4.84
1627 1782 1.956170 ACTTCTGCTCGGTGCGTTG 60.956 57.895 0.00 0.00 46.63 4.10
1628 1783 1.956170 CTTCTGCTCGGTGCGTTGT 60.956 57.895 0.00 0.00 46.63 3.32
1629 1784 1.498865 CTTCTGCTCGGTGCGTTGTT 61.499 55.000 0.00 0.00 46.63 2.83
1630 1785 1.771073 TTCTGCTCGGTGCGTTGTTG 61.771 55.000 0.00 0.00 46.63 3.33
1649 1804 2.284258 AGGGAGAGCAGAGCCGTT 60.284 61.111 0.00 0.00 0.00 4.44
1676 1831 2.545742 GGAATCCTTGTGTGTTGTTGCC 60.546 50.000 0.00 0.00 0.00 4.52
1881 2041 2.832129 AGCTTTGTCTACATTCCGGAGA 59.168 45.455 3.34 0.00 0.00 3.71
1986 2201 7.450074 TGTATATTCTCCAGTTTGTTGTGTCT 58.550 34.615 0.00 0.00 0.00 3.41
2072 2289 8.927675 AACACAACCCTGTTATTAACTATCAA 57.072 30.769 7.99 0.00 32.38 2.57
2373 2603 5.305644 AGGAAGGATGACAGCTACGATTAAT 59.694 40.000 0.00 0.00 0.00 1.40
2376 2606 6.161855 AGGATGACAGCTACGATTAATTCA 57.838 37.500 0.00 0.00 0.00 2.57
2653 2919 5.825679 TGACATGTAAAGTGTTTAAGCCACT 59.174 36.000 0.00 4.51 44.80 4.00
2681 2948 6.402981 AAGTTCCATACTGAAACCCCTATT 57.597 37.500 0.00 0.00 37.12 1.73
2682 2949 5.755849 AGTTCCATACTGAAACCCCTATTG 58.244 41.667 0.00 0.00 35.19 1.90
2815 3091 0.677288 CGGAATACAGGGATACGCCA 59.323 55.000 0.00 0.00 38.95 5.69
2821 3114 1.352083 ACAGGGATACGCCAGCATAT 58.648 50.000 0.00 0.00 38.95 1.78
2823 3116 1.002430 CAGGGATACGCCAGCATATGT 59.998 52.381 4.29 0.00 38.95 2.29
2824 3117 1.002430 AGGGATACGCCAGCATATGTG 59.998 52.381 4.29 1.77 38.95 3.21
2825 3118 1.270839 GGGATACGCCAGCATATGTGT 60.271 52.381 4.29 0.00 38.95 3.72
2826 3119 2.028476 GGGATACGCCAGCATATGTGTA 60.028 50.000 4.29 0.00 38.95 2.90
2843 3136 8.762645 CATATGTGTATGTATCCCCAAGTATCT 58.237 37.037 0.00 0.00 34.31 1.98
2872 3165 6.242396 TGAAGGTTATAAAAAGTGCTAGGCA 58.758 36.000 0.00 0.00 35.60 4.75
2906 3199 1.398692 TGCCACCTTTCTGACCAAAC 58.601 50.000 0.00 0.00 0.00 2.93
2913 3228 0.736053 TTTCTGACCAAACCGCACAC 59.264 50.000 0.00 0.00 0.00 3.82
2914 3229 0.107410 TTCTGACCAAACCGCACACT 60.107 50.000 0.00 0.00 0.00 3.55
2915 3230 0.107410 TCTGACCAAACCGCACACTT 60.107 50.000 0.00 0.00 0.00 3.16
2916 3231 1.139256 TCTGACCAAACCGCACACTTA 59.861 47.619 0.00 0.00 0.00 2.24
2917 3232 1.944024 CTGACCAAACCGCACACTTAA 59.056 47.619 0.00 0.00 0.00 1.85
2918 3233 1.944024 TGACCAAACCGCACACTTAAG 59.056 47.619 0.00 0.00 0.00 1.85
2919 3234 0.666374 ACCAAACCGCACACTTAAGC 59.334 50.000 1.29 0.00 0.00 3.09
2930 3245 3.181501 GCACACTTAAGCGCAATTATCCA 60.182 43.478 11.47 0.00 0.00 3.41
2934 3249 5.207768 CACTTAAGCGCAATTATCCACATC 58.792 41.667 11.47 0.00 0.00 3.06
2957 3272 3.865700 GCTAGGCGTTTTGCTTGTT 57.134 47.368 0.00 0.00 45.43 2.83
2958 3273 2.134201 GCTAGGCGTTTTGCTTGTTT 57.866 45.000 0.00 0.00 45.43 2.83
2959 3274 2.469826 GCTAGGCGTTTTGCTTGTTTT 58.530 42.857 0.00 0.00 45.43 2.43
2960 3275 2.218530 GCTAGGCGTTTTGCTTGTTTTG 59.781 45.455 0.00 0.00 45.43 2.44
2961 3276 1.006086 AGGCGTTTTGCTTGTTTTGC 58.994 45.000 0.00 0.00 45.43 3.68
2962 3277 1.006086 GGCGTTTTGCTTGTTTTGCT 58.994 45.000 0.00 0.00 45.43 3.91
3033 3376 0.911769 CTGGGACACTGGGCAGATAA 59.088 55.000 0.00 0.00 0.00 1.75
3197 3751 1.484240 AGAAGATTCAAGCGGAGAGGG 59.516 52.381 0.00 0.00 0.00 4.30
3220 3774 2.722201 GGGGACAGAAGCGACCGAT 61.722 63.158 0.00 0.00 0.00 4.18
3231 3785 0.458543 GCGACCGATGAGCAAGAAGA 60.459 55.000 0.00 0.00 0.00 2.87
3294 3848 4.357279 GCAGCTGGAGCAAGGGGT 62.357 66.667 17.12 0.00 45.16 4.95
3316 3870 3.012518 CGCAGAATGAGAATGGGAAAGT 58.987 45.455 0.00 0.00 38.60 2.66
3318 3872 4.012374 GCAGAATGAGAATGGGAAAGTGA 58.988 43.478 0.00 0.00 39.69 3.41
3385 3940 3.947868 ACATATGCACTGCTCAAAGTCT 58.052 40.909 1.58 0.00 0.00 3.24
3396 3951 6.805271 CACTGCTCAAAGTCTTTCATTAATGG 59.195 38.462 15.36 0.00 0.00 3.16
3560 4137 2.482326 GCTTCTTAGCGTGGCCATT 58.518 52.632 9.72 0.00 37.71 3.16
3562 4139 2.014068 GCTTCTTAGCGTGGCCATTCT 61.014 52.381 9.72 12.03 37.71 2.40
3585 4162 1.454479 CTGCCATGGCCCTGGTTAG 60.454 63.158 33.44 18.26 41.09 2.34
3586 4163 2.834968 GCCATGGCCCTGGTTAGC 60.835 66.667 27.24 9.74 38.63 3.09
3587 4164 2.682846 CCATGGCCCTGGTTAGCA 59.317 61.111 18.45 0.00 0.00 3.49
3588 4165 1.454479 CCATGGCCCTGGTTAGCAG 60.454 63.158 18.45 4.21 0.00 4.24
3591 4168 1.941403 ATGGCCCTGGTTAGCAGCAT 61.941 55.000 5.83 1.80 0.00 3.79
3751 4339 6.861055 TGTGTTTCTGAACTTTGTTCTGTTTC 59.139 34.615 11.06 6.68 36.70 2.78
3916 4506 3.165071 TGTCACTATGAAGGAGAGCACA 58.835 45.455 0.00 0.00 0.00 4.57
3921 4511 5.046529 CACTATGAAGGAGAGCACACATAC 58.953 45.833 0.00 0.00 0.00 2.39
3949 4539 0.666374 AAAACCAAACCTCGAAGGCG 59.334 50.000 1.36 0.00 39.63 5.52
4051 4641 5.219877 CCGAACTGTTAAACACAAACAAACG 60.220 40.000 0.00 0.00 36.46 3.60
4130 4720 8.378172 TCTAAATCCGAGCATTAAATAGTTGG 57.622 34.615 0.00 0.00 0.00 3.77
4133 4723 7.404671 AATCCGAGCATTAAATAGTTGGTTT 57.595 32.000 0.00 0.00 0.00 3.27
4136 4726 8.514330 TCCGAGCATTAAATAGTTGGTTTATT 57.486 30.769 0.00 0.00 0.00 1.40
4249 4839 3.894427 TGGTACCATGAATTGTGTTTGCT 59.106 39.130 11.60 0.00 0.00 3.91
4256 4846 6.991531 ACCATGAATTGTGTTTGCTTGTTATT 59.008 30.769 0.00 0.00 0.00 1.40
4259 4849 9.372541 CATGAATTGTGTTTGCTTGTTATTTTC 57.627 29.630 0.00 0.00 0.00 2.29
4260 4850 8.484641 TGAATTGTGTTTGCTTGTTATTTTCA 57.515 26.923 0.00 0.00 0.00 2.69
4261 4851 8.939929 TGAATTGTGTTTGCTTGTTATTTTCAA 58.060 25.926 0.00 0.00 0.00 2.69
4262 4852 9.934190 GAATTGTGTTTGCTTGTTATTTTCAAT 57.066 25.926 0.00 0.00 0.00 2.57
4319 4910 9.780186 GTGCTTACTACCTATAATGAATTTCCT 57.220 33.333 0.00 0.00 0.00 3.36
4341 4932 1.453155 ACATCGGGTTCATGCTTCAC 58.547 50.000 0.00 0.00 0.00 3.18
4349 4940 4.692228 GGGTTCATGCTTCACTTTTCAAA 58.308 39.130 0.00 0.00 0.00 2.69
4447 5046 9.092876 CTTTAGCTGAGTTAACTAATTCTGGAG 57.907 37.037 8.42 0.00 0.00 3.86
4482 5319 6.645415 TCTTAACTGGACAAGAACGATTCTTC 59.355 38.462 9.20 2.12 46.62 2.87
4483 5320 4.336889 ACTGGACAAGAACGATTCTTCA 57.663 40.909 9.20 5.59 46.62 3.02
4485 5322 4.932200 ACTGGACAAGAACGATTCTTCATC 59.068 41.667 9.20 9.67 46.62 2.92
4514 5351 7.056006 ACATGCATACACATCCTTCTGAATTA 58.944 34.615 0.00 0.00 0.00 1.40
4523 5360 9.039165 ACACATCCTTCTGAATTATGGAAATTT 57.961 29.630 13.45 0.00 0.00 1.82
4574 5411 4.241590 AGCAAATGACGAAAAGCATGAA 57.758 36.364 0.00 0.00 0.00 2.57
4576 5413 3.181537 GCAAATGACGAAAAGCATGAAGC 60.182 43.478 0.00 0.00 46.19 3.86
4607 5444 5.586243 ACCAATGTTGACTGAATCTAATCCG 59.414 40.000 0.00 0.00 0.00 4.18
4645 5482 3.152341 CAAATTCTGGAAGTGCTGGAGT 58.848 45.455 0.00 0.00 33.76 3.85
4668 5505 1.756430 GGATGAGGTCAAGGAAAGCC 58.244 55.000 0.00 0.00 0.00 4.35
4733 5570 6.790232 AAAAGGAAGAAGAAACAACATGGA 57.210 33.333 0.00 0.00 0.00 3.41
4747 5584 7.823745 AACAACATGGAAAGAGTTAGATTGT 57.176 32.000 0.00 0.00 0.00 2.71
4748 5585 7.206981 ACAACATGGAAAGAGTTAGATTGTG 57.793 36.000 0.00 0.00 0.00 3.33
4777 5615 4.406003 AGCCTACAGGTCTTAACTACATGG 59.594 45.833 0.00 0.00 37.57 3.66
4796 5634 2.371841 TGGTGGTTGCAGACAGAGTTAT 59.628 45.455 0.00 0.00 0.00 1.89
4839 5678 2.385013 TGGTGCACATGCTACAGTAG 57.615 50.000 20.43 2.85 42.66 2.57
4840 5679 1.623311 TGGTGCACATGCTACAGTAGT 59.377 47.619 20.43 0.00 42.66 2.73
4841 5680 2.829120 TGGTGCACATGCTACAGTAGTA 59.171 45.455 20.43 5.08 42.66 1.82
4842 5681 3.187700 GGTGCACATGCTACAGTAGTAC 58.812 50.000 20.43 0.00 42.66 2.73
4843 5682 3.368013 GGTGCACATGCTACAGTAGTACA 60.368 47.826 20.43 0.17 42.66 2.90
4881 5720 6.403333 TTTAAGCAACGAGTAATAGTGCTG 57.597 37.500 0.00 0.00 0.00 4.41
4889 5728 4.389077 ACGAGTAATAGTGCTGTCTTTTGC 59.611 41.667 0.00 0.00 0.00 3.68
4890 5729 4.388773 CGAGTAATAGTGCTGTCTTTTGCA 59.611 41.667 0.00 0.00 36.79 4.08
4891 5730 5.445142 CGAGTAATAGTGCTGTCTTTTGCAG 60.445 44.000 0.00 0.00 40.06 4.41
4892 5731 5.308825 AGTAATAGTGCTGTCTTTTGCAGT 58.691 37.500 0.00 0.00 44.04 4.40
4893 5732 5.765182 AGTAATAGTGCTGTCTTTTGCAGTT 59.235 36.000 0.00 0.00 42.15 3.16
4894 5733 5.520376 AATAGTGCTGTCTTTTGCAGTTT 57.480 34.783 0.00 0.00 42.15 2.66
4895 5734 3.874392 AGTGCTGTCTTTTGCAGTTTT 57.126 38.095 0.00 0.00 39.51 2.43
4896 5735 3.514645 AGTGCTGTCTTTTGCAGTTTTG 58.485 40.909 0.00 0.00 39.51 2.44
4921 5760 6.317391 GCTATGCCATCATTCCTATAGTTTCC 59.683 42.308 0.00 0.00 34.22 3.13
4935 5774 0.039527 GTTTCCGATTGCGCCTTGTT 60.040 50.000 4.18 0.00 35.83 2.83
4940 5779 1.734117 GATTGCGCCTTGTTGTGCC 60.734 57.895 4.18 0.00 41.01 5.01
4945 5784 2.946762 GCCTTGTTGTGCCGTCTC 59.053 61.111 0.00 0.00 0.00 3.36
4952 5791 0.033504 GTTGTGCCGTCTCCTCTTCA 59.966 55.000 0.00 0.00 0.00 3.02
4969 5808 6.369890 TCCTCTTCATCATCTTTTTCTTGTCG 59.630 38.462 0.00 0.00 0.00 4.35
4972 5811 6.483307 TCTTCATCATCTTTTTCTTGTCGTGT 59.517 34.615 0.00 0.00 0.00 4.49
4980 5819 6.311723 TCTTTTTCTTGTCGTGTGTTTCTTC 58.688 36.000 0.00 0.00 0.00 2.87
4981 5820 5.614923 TTTTCTTGTCGTGTGTTTCTTCA 57.385 34.783 0.00 0.00 0.00 3.02
4982 5821 5.614923 TTTCTTGTCGTGTGTTTCTTCAA 57.385 34.783 0.00 0.00 0.00 2.69
4983 5822 5.811399 TTCTTGTCGTGTGTTTCTTCAAT 57.189 34.783 0.00 0.00 0.00 2.57
4984 5823 5.155509 TCTTGTCGTGTGTTTCTTCAATG 57.844 39.130 0.00 0.00 0.00 2.82
4985 5824 3.961477 TGTCGTGTGTTTCTTCAATGG 57.039 42.857 0.00 0.00 0.00 3.16
4986 5825 2.616376 TGTCGTGTGTTTCTTCAATGGG 59.384 45.455 0.00 0.00 0.00 4.00
4987 5826 2.616842 GTCGTGTGTTTCTTCAATGGGT 59.383 45.455 0.00 0.00 0.00 4.51
4988 5827 3.810941 GTCGTGTGTTTCTTCAATGGGTA 59.189 43.478 0.00 0.00 0.00 3.69
4989 5828 4.062293 TCGTGTGTTTCTTCAATGGGTAG 58.938 43.478 0.00 0.00 0.00 3.18
4990 5829 3.364964 CGTGTGTTTCTTCAATGGGTAGC 60.365 47.826 0.00 0.00 0.00 3.58
4991 5830 3.057526 GTGTGTTTCTTCAATGGGTAGCC 60.058 47.826 3.29 3.29 0.00 3.93
4992 5831 2.492088 GTGTTTCTTCAATGGGTAGCCC 59.508 50.000 8.85 0.62 45.71 5.19
5001 5840 2.832498 GGGTAGCCCATCTCCAGC 59.168 66.667 0.00 0.00 44.65 4.85
5002 5841 2.823758 GGGTAGCCCATCTCCAGCC 61.824 68.421 0.00 0.00 44.65 4.85
5003 5842 2.072487 GGTAGCCCATCTCCAGCCA 61.072 63.158 0.00 0.00 0.00 4.75
5004 5843 1.147153 GTAGCCCATCTCCAGCCAC 59.853 63.158 0.00 0.00 0.00 5.01
5005 5844 1.003442 TAGCCCATCTCCAGCCACT 59.997 57.895 0.00 0.00 0.00 4.00
5006 5845 0.621571 TAGCCCATCTCCAGCCACTT 60.622 55.000 0.00 0.00 0.00 3.16
5007 5846 0.621571 AGCCCATCTCCAGCCACTTA 60.622 55.000 0.00 0.00 0.00 2.24
5008 5847 0.475906 GCCCATCTCCAGCCACTTAT 59.524 55.000 0.00 0.00 0.00 1.73
5009 5848 1.816961 GCCCATCTCCAGCCACTTATG 60.817 57.143 0.00 0.00 0.00 1.90
5010 5849 1.602311 CCATCTCCAGCCACTTATGC 58.398 55.000 0.00 0.00 0.00 3.14
5011 5850 1.134007 CCATCTCCAGCCACTTATGCA 60.134 52.381 0.00 0.00 0.00 3.96
5012 5851 2.646930 CATCTCCAGCCACTTATGCAA 58.353 47.619 0.00 0.00 0.00 4.08
5013 5852 2.877097 TCTCCAGCCACTTATGCAAA 57.123 45.000 0.00 0.00 0.00 3.68
5014 5853 3.153369 TCTCCAGCCACTTATGCAAAA 57.847 42.857 0.00 0.00 0.00 2.44
5015 5854 3.084039 TCTCCAGCCACTTATGCAAAAG 58.916 45.455 0.00 0.00 0.00 2.27
5016 5855 1.545582 TCCAGCCACTTATGCAAAAGC 59.454 47.619 0.00 0.00 0.00 3.51
5017 5856 1.547372 CCAGCCACTTATGCAAAAGCT 59.453 47.619 0.00 0.00 0.00 3.74
5018 5857 2.028748 CCAGCCACTTATGCAAAAGCTT 60.029 45.455 0.00 0.00 0.00 3.74
5019 5858 3.248266 CAGCCACTTATGCAAAAGCTTC 58.752 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.007398 CAGTCAAGCTTTCACCCTCTACT 59.993 47.826 0.00 0.00 0.00 2.57
1 2 3.006967 TCAGTCAAGCTTTCACCCTCTAC 59.993 47.826 0.00 0.00 0.00 2.59
42 43 0.529378 GCCAGGCCAGATTTCACTTG 59.471 55.000 5.01 0.00 0.00 3.16
52 53 4.974721 AAACCCACGCCAGGCCAG 62.975 66.667 5.01 0.00 0.00 4.85
55 56 1.744320 AAAGAAAACCCACGCCAGGC 61.744 55.000 0.00 0.00 0.00 4.85
61 62 4.537015 GAGTTCATGAAAGAAAACCCACG 58.463 43.478 10.35 0.00 0.00 4.94
92 95 4.039004 TGTTTCCAAAGGACCATGACAATG 59.961 41.667 0.00 0.00 0.00 2.82
149 153 1.462283 CTCACAGTGACCATTGCTTCG 59.538 52.381 0.00 0.00 0.00 3.79
163 167 7.700234 GTCATCTTGACTAATACTGACTCACAG 59.300 40.741 0.45 0.00 45.96 3.66
191 195 3.017442 GGGACTTAGATGGCCTTTCAAC 58.983 50.000 3.32 0.00 0.00 3.18
193 197 2.562296 AGGGACTTAGATGGCCTTTCA 58.438 47.619 3.32 0.00 27.25 2.69
204 208 5.186198 CCCAAGAACACATTAGGGACTTAG 58.814 45.833 0.00 0.00 41.75 2.18
206 210 3.245264 CCCCAAGAACACATTAGGGACTT 60.245 47.826 0.00 0.00 41.75 3.01
238 242 6.668541 AATCGTTAGTCCAACAGAATCATG 57.331 37.500 0.00 0.00 36.92 3.07
239 243 8.786826 TTAAATCGTTAGTCCAACAGAATCAT 57.213 30.769 0.00 0.00 36.92 2.45
245 249 8.251750 TCTCAATTAAATCGTTAGTCCAACAG 57.748 34.615 0.00 0.00 36.92 3.16
278 282 6.409695 CCTGACCCAATGGACTAAATATCTGT 60.410 42.308 0.00 0.00 34.81 3.41
312 316 8.454106 AGAAAACGAAATCAGATTAATGAGTGG 58.546 33.333 0.00 0.00 31.44 4.00
325 329 6.202516 AGGACACAAAAGAAAACGAAATCA 57.797 33.333 0.00 0.00 0.00 2.57
326 330 7.253983 GGAAAGGACACAAAAGAAAACGAAATC 60.254 37.037 0.00 0.00 0.00 2.17
331 335 4.739195 TGGAAAGGACACAAAAGAAAACG 58.261 39.130 0.00 0.00 0.00 3.60
332 336 6.647212 CTTGGAAAGGACACAAAAGAAAAC 57.353 37.500 0.00 0.00 41.27 2.43
354 358 6.715264 CCAGATTAAGACACACCCTTAAAACT 59.285 38.462 0.00 0.00 38.92 2.66
374 378 8.206126 AGTGGGAATAAAATGAAAAACCAGAT 57.794 30.769 0.00 0.00 0.00 2.90
375 379 7.610580 AGTGGGAATAAAATGAAAAACCAGA 57.389 32.000 0.00 0.00 0.00 3.86
376 380 8.150296 AGAAGTGGGAATAAAATGAAAAACCAG 58.850 33.333 0.00 0.00 0.00 4.00
377 381 8.028652 AGAAGTGGGAATAAAATGAAAAACCA 57.971 30.769 0.00 0.00 0.00 3.67
394 410 6.743575 ACGAAATGAAAAGATAGAAGTGGG 57.256 37.500 0.00 0.00 0.00 4.61
395 411 8.507249 AGAAACGAAATGAAAAGATAGAAGTGG 58.493 33.333 0.00 0.00 0.00 4.00
398 414 9.548208 GGAAGAAACGAAATGAAAAGATAGAAG 57.452 33.333 0.00 0.00 0.00 2.85
401 430 7.965107 CCTGGAAGAAACGAAATGAAAAGATAG 59.035 37.037 0.00 0.00 34.07 2.08
403 432 6.265422 ACCTGGAAGAAACGAAATGAAAAGAT 59.735 34.615 0.00 0.00 34.07 2.40
409 438 5.845391 AAAACCTGGAAGAAACGAAATGA 57.155 34.783 0.00 0.00 34.07 2.57
444 473 1.610363 TCACCACTGCGCCATAAAAA 58.390 45.000 4.18 0.00 0.00 1.94
445 474 1.539388 CTTCACCACTGCGCCATAAAA 59.461 47.619 4.18 0.00 0.00 1.52
446 475 1.164411 CTTCACCACTGCGCCATAAA 58.836 50.000 4.18 0.00 0.00 1.40
447 476 0.036164 ACTTCACCACTGCGCCATAA 59.964 50.000 4.18 0.00 0.00 1.90
448 477 0.391130 GACTTCACCACTGCGCCATA 60.391 55.000 4.18 0.00 0.00 2.74
449 478 1.672356 GACTTCACCACTGCGCCAT 60.672 57.895 4.18 0.00 0.00 4.40
450 479 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
451 480 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
452 481 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
453 482 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
454 483 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
460 489 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
461 490 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
462 491 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
463 492 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
464 493 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
465 494 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
466 495 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
477 506 2.431683 GCAGGACCTCTTGGCACA 59.568 61.111 0.00 0.00 36.63 4.57
478 507 2.743928 CGCAGGACCTCTTGGCAC 60.744 66.667 0.00 0.00 36.63 5.01
479 508 2.731691 GAACGCAGGACCTCTTGGCA 62.732 60.000 0.00 0.00 36.63 4.92
480 509 2.032681 AACGCAGGACCTCTTGGC 59.967 61.111 0.00 0.00 36.63 4.52
481 510 1.738099 CGAACGCAGGACCTCTTGG 60.738 63.158 0.00 0.00 39.83 3.61
482 511 0.319555 TTCGAACGCAGGACCTCTTG 60.320 55.000 0.00 0.00 0.00 3.02
483 512 0.319641 GTTCGAACGCAGGACCTCTT 60.320 55.000 13.36 0.00 0.00 2.85
484 513 1.289380 GTTCGAACGCAGGACCTCT 59.711 57.895 13.36 0.00 0.00 3.69
485 514 1.737008 GGTTCGAACGCAGGACCTC 60.737 63.158 21.34 1.08 0.00 3.85
486 515 2.342648 GGTTCGAACGCAGGACCT 59.657 61.111 21.34 0.00 0.00 3.85
487 516 2.027625 CTGGTTCGAACGCAGGACC 61.028 63.158 26.31 13.87 0.00 4.46
488 517 2.668280 GCTGGTTCGAACGCAGGAC 61.668 63.158 30.69 19.71 31.84 3.85
489 518 2.357034 GCTGGTTCGAACGCAGGA 60.357 61.111 30.69 12.75 31.84 3.86
490 519 3.423154 GGCTGGTTCGAACGCAGG 61.423 66.667 30.69 19.29 31.84 4.85
491 520 2.357517 AGGCTGGTTCGAACGCAG 60.358 61.111 28.15 28.15 33.29 5.18
492 521 2.357034 GAGGCTGGTTCGAACGCA 60.357 61.111 23.58 19.58 0.00 5.24
493 522 2.048127 AGAGGCTGGTTCGAACGC 60.048 61.111 21.34 18.91 0.00 4.84
494 523 0.734253 CAGAGAGGCTGGTTCGAACG 60.734 60.000 21.34 10.26 41.07 3.95
495 524 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
496 525 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
497 526 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
498 527 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
499 528 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
500 529 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
501 530 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
502 531 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
504 533 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
505 534 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
506 535 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
507 536 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
518 547 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
519 548 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
520 549 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
521 550 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
522 551 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
523 552 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
524 553 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
525 554 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
526 555 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
527 556 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
528 557 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
529 558 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
530 559 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
531 560 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
532 561 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
533 562 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
534 563 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
535 564 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
536 565 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
537 566 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
538 567 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
539 568 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
540 569 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
541 570 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
542 571 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
543 572 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
544 573 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
545 574 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
546 575 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
547 576 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
548 577 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
549 578 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
550 579 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
551 580 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
553 582 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
554 583 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
555 584 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
556 585 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
557 586 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
558 587 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
559 588 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
567 596 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
568 597 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
569 598 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
570 599 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
571 600 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
572 601 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
573 602 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
574 603 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
575 604 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
576 605 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
577 606 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
578 607 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
579 608 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
580 609 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
581 610 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
582 611 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
583 612 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
584 613 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
585 614 2.543037 TAGGACAGACCCAGTGCATA 57.457 50.000 0.00 0.00 40.05 3.14
586 615 1.765314 GATAGGACAGACCCAGTGCAT 59.235 52.381 0.00 0.00 40.05 3.96
587 616 1.195115 GATAGGACAGACCCAGTGCA 58.805 55.000 0.00 0.00 40.05 4.57
588 617 1.490574 AGATAGGACAGACCCAGTGC 58.509 55.000 0.00 0.00 40.05 4.40
589 618 4.559862 AAAAGATAGGACAGACCCAGTG 57.440 45.455 0.00 0.00 40.05 3.66
614 643 9.959749 GTGGGCGAAAAATATTATAGATGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
704 776 2.483583 TTGTGTGCGGAAACATCAAC 57.516 45.000 0.00 0.00 31.49 3.18
706 778 1.745653 TGTTTGTGTGCGGAAACATCA 59.254 42.857 0.00 1.13 37.19 3.07
707 779 2.223479 ACTGTTTGTGTGCGGAAACATC 60.223 45.455 0.00 0.00 40.38 3.06
708 780 1.748493 ACTGTTTGTGTGCGGAAACAT 59.252 42.857 0.00 0.00 40.38 2.71
709 781 1.169577 ACTGTTTGTGTGCGGAAACA 58.830 45.000 0.00 0.00 39.24 2.83
710 782 2.271821 AACTGTTTGTGTGCGGAAAC 57.728 45.000 0.00 0.00 33.48 2.78
819 906 2.094957 CACGGCCGAAATACCACAAATT 60.095 45.455 35.90 0.00 0.00 1.82
820 907 1.470890 CACGGCCGAAATACCACAAAT 59.529 47.619 35.90 0.00 0.00 2.32
821 908 0.875728 CACGGCCGAAATACCACAAA 59.124 50.000 35.90 0.00 0.00 2.83
864 983 4.137543 GGCCTCTATGGACACAATTTAGG 58.862 47.826 0.00 0.00 45.54 2.69
874 993 1.070914 GTTAGCTGGGCCTCTATGGAC 59.929 57.143 4.53 0.00 45.48 4.02
875 994 1.424638 GTTAGCTGGGCCTCTATGGA 58.575 55.000 4.53 0.00 38.35 3.41
876 995 0.398318 GGTTAGCTGGGCCTCTATGG 59.602 60.000 4.53 0.00 39.35 2.74
877 996 1.071385 CAGGTTAGCTGGGCCTCTATG 59.929 57.143 4.53 0.00 0.00 2.23
878 997 1.428869 CAGGTTAGCTGGGCCTCTAT 58.571 55.000 4.53 0.00 0.00 1.98
879 998 1.338136 GCAGGTTAGCTGGGCCTCTA 61.338 60.000 13.50 3.37 0.00 2.43
880 999 2.674220 GCAGGTTAGCTGGGCCTCT 61.674 63.158 13.50 4.47 0.00 3.69
881 1000 2.124529 GCAGGTTAGCTGGGCCTC 60.125 66.667 13.50 0.00 0.00 4.70
882 1001 2.935481 TGCAGGTTAGCTGGGCCT 60.935 61.111 13.50 0.00 34.99 5.19
883 1002 2.751837 GTGCAGGTTAGCTGGGCC 60.752 66.667 13.50 0.00 34.99 5.80
884 1003 3.127533 CGTGCAGGTTAGCTGGGC 61.128 66.667 13.50 0.04 34.99 5.36
885 1004 2.436646 CCGTGCAGGTTAGCTGGG 60.437 66.667 13.50 2.32 34.99 4.45
886 1005 1.741770 GTCCGTGCAGGTTAGCTGG 60.742 63.158 13.50 0.00 41.99 4.85
896 1015 4.966787 GGGCTTTGGGTCCGTGCA 62.967 66.667 0.00 0.00 0.00 4.57
901 1020 2.997315 GGCTTGGGCTTTGGGTCC 60.997 66.667 0.00 0.00 40.85 4.46
920 1039 3.794564 GTCACATTCGTTGGGTTTTTGAC 59.205 43.478 0.00 0.00 0.00 3.18
929 1048 5.123820 AGGAAATATGTGTCACATTCGTTGG 59.876 40.000 23.05 0.00 39.88 3.77
969 1088 3.764237 TTTTGACGGGAGCTTCTAAGT 57.236 42.857 0.00 0.00 0.00 2.24
1250 1390 1.300697 GTGAGCTCAAACCGTCGGT 60.301 57.895 20.19 12.23 37.65 4.69
1300 1440 2.031516 CAACAGCGACCTCAGCCAG 61.032 63.158 0.00 0.00 34.64 4.85
1434 1574 3.034635 AGAGAACTCGGTGAATATGGCT 58.965 45.455 0.00 0.00 34.09 4.75
1455 1595 3.731728 GCAGGGTCAGCCATGGGA 61.732 66.667 15.13 0.00 45.92 4.37
1512 1652 3.487202 CGGTCAATGACACGGCCG 61.487 66.667 26.86 26.86 33.68 6.13
1527 1667 1.517832 CTGAGACCTTAGGCCACGG 59.482 63.158 5.01 4.19 0.00 4.94
1544 1687 1.705186 ACAGTACCAAACAGCCATCCT 59.295 47.619 0.00 0.00 0.00 3.24
1561 1707 5.295292 TCAGCTCTCTGACAAAAAGAAACAG 59.705 40.000 0.00 0.00 43.95 3.16
1563 1709 5.741388 TCAGCTCTCTGACAAAAAGAAAC 57.259 39.130 0.00 0.00 43.95 2.78
1582 1730 6.633500 TCCAAATTAAACTCCACACTTCAG 57.367 37.500 0.00 0.00 0.00 3.02
1602 1751 0.976641 ACCGAGCAGAAGTGAATCCA 59.023 50.000 0.00 0.00 0.00 3.41
1616 1765 2.249309 CTGCAACAACGCACCGAG 59.751 61.111 0.00 0.00 36.86 4.63
1625 1780 0.035881 CTCTGCTCTCCCTGCAACAA 59.964 55.000 0.00 0.00 40.13 2.83
1626 1781 1.675801 CTCTGCTCTCCCTGCAACA 59.324 57.895 0.00 0.00 40.13 3.33
1627 1782 1.744741 GCTCTGCTCTCCCTGCAAC 60.745 63.158 0.00 0.00 40.13 4.17
1628 1783 2.667418 GCTCTGCTCTCCCTGCAA 59.333 61.111 0.00 0.00 40.13 4.08
1629 1784 3.397439 GGCTCTGCTCTCCCTGCA 61.397 66.667 0.00 0.00 38.81 4.41
1630 1785 4.527583 CGGCTCTGCTCTCCCTGC 62.528 72.222 0.00 0.00 0.00 4.85
1649 1804 5.569355 ACAACACACAAGGATTCCATATCA 58.431 37.500 5.29 0.00 0.00 2.15
1676 1831 1.811266 CGACCAGACATGCTTCCCG 60.811 63.158 0.00 0.00 0.00 5.14
1770 1930 0.878086 GCGCTCTACCCAGAAGCATC 60.878 60.000 0.00 0.00 35.64 3.91
1881 2041 1.150536 ACCAACCGTGCATTCAGGT 59.849 52.632 0.00 0.00 40.50 4.00
2072 2289 2.224426 TGTAAACGACAGGACCAGCATT 60.224 45.455 0.00 0.00 32.86 3.56
2127 2344 6.998074 TGGATCCATGACCTGTAAAATACATC 59.002 38.462 11.44 0.00 38.15 3.06
2373 2603 2.557924 GGCACAGACATCACCATTTGAA 59.442 45.455 0.00 0.00 37.92 2.69
2376 2606 2.291209 TGGCACAGACATCACCATTT 57.709 45.000 0.00 0.00 0.00 2.32
2581 2812 2.441001 ACCACATTCCCAATTGGCAAAA 59.559 40.909 19.75 12.58 31.76 2.44
2582 2813 2.053244 ACCACATTCCCAATTGGCAAA 58.947 42.857 19.75 15.04 31.76 3.68
2681 2948 9.323985 CATCTTTTTGTTTCCCTTTTTATGTCA 57.676 29.630 0.00 0.00 0.00 3.58
2682 2949 9.541143 TCATCTTTTTGTTTCCCTTTTTATGTC 57.459 29.630 0.00 0.00 0.00 3.06
2815 3091 5.310594 ACTTGGGGATACATACACATATGCT 59.689 40.000 1.58 0.00 41.83 3.79
2821 3114 7.446106 AAAGATACTTGGGGATACATACACA 57.554 36.000 0.00 0.00 39.74 3.72
2872 3165 5.289083 AGGTGGCAAAACACACAATTAAT 57.711 34.783 0.00 0.00 43.08 1.40
2913 3228 5.422666 TGATGTGGATAATTGCGCTTAAG 57.577 39.130 9.73 0.00 0.00 1.85
2914 3229 5.733091 GCTTGATGTGGATAATTGCGCTTAA 60.733 40.000 9.73 0.00 0.00 1.85
2915 3230 4.261155 GCTTGATGTGGATAATTGCGCTTA 60.261 41.667 9.73 0.00 0.00 3.09
2916 3231 3.489738 GCTTGATGTGGATAATTGCGCTT 60.490 43.478 9.73 0.00 0.00 4.68
2917 3232 2.033801 GCTTGATGTGGATAATTGCGCT 59.966 45.455 9.73 0.00 0.00 5.92
2918 3233 2.388121 GCTTGATGTGGATAATTGCGC 58.612 47.619 0.00 0.00 0.00 6.09
2919 3234 2.642995 CGCTTGATGTGGATAATTGCG 58.357 47.619 0.00 0.00 35.22 4.85
2920 3235 2.033801 AGCGCTTGATGTGGATAATTGC 59.966 45.455 2.64 0.00 0.00 3.56
2921 3236 3.976793 AGCGCTTGATGTGGATAATTG 57.023 42.857 2.64 0.00 0.00 2.32
2922 3237 4.067896 CCTAGCGCTTGATGTGGATAATT 58.932 43.478 18.68 0.00 0.00 1.40
2923 3238 3.668447 CCTAGCGCTTGATGTGGATAAT 58.332 45.455 18.68 0.00 0.00 1.28
2927 3242 1.153369 GCCTAGCGCTTGATGTGGA 60.153 57.895 18.68 0.00 0.00 4.02
2960 3275 1.002359 GAAAAAGGCATAGGCGCTAGC 60.002 52.381 7.64 4.06 42.47 3.42
2961 3276 1.604278 GGAAAAAGGCATAGGCGCTAG 59.396 52.381 7.64 0.00 42.47 3.42
2962 3277 1.675552 GGAAAAAGGCATAGGCGCTA 58.324 50.000 7.64 0.00 42.47 4.26
3033 3376 0.763652 CTCTGCCCATATCACAGCCT 59.236 55.000 0.00 0.00 0.00 4.58
3172 3726 0.375106 CCGCTTGAATCTTCTTCGCC 59.625 55.000 0.00 0.00 0.00 5.54
3197 3751 0.179097 GTCGCTTCTGTCCCCATCTC 60.179 60.000 0.00 0.00 0.00 2.75
3220 3774 2.554142 CCGCATGTATCTTCTTGCTCA 58.446 47.619 0.00 0.00 36.68 4.26
3294 3848 3.273434 CTTTCCCATTCTCATTCTGCGA 58.727 45.455 0.00 0.00 0.00 5.10
3316 3870 2.310349 AGACTAAGTCAGCTCCTCCTCA 59.690 50.000 0.00 0.00 34.60 3.86
3318 3872 3.783642 TCTAGACTAAGTCAGCTCCTCCT 59.216 47.826 0.00 0.00 34.60 3.69
3385 3940 7.340122 TGTTGTCACAGTTCCATTAATGAAA 57.660 32.000 17.23 0.00 0.00 2.69
3560 4137 0.104777 AGGGCCATGGCAGAGATAGA 60.105 55.000 36.56 0.00 44.11 1.98
3562 4139 1.421346 CCAGGGCCATGGCAGAGATA 61.421 60.000 36.56 0.00 44.11 1.98
3588 4165 2.638480 TTGGTAGCAGATGGGTATGC 57.362 50.000 0.00 0.00 42.79 3.14
3591 4168 5.442391 GGTAAATTTGGTAGCAGATGGGTA 58.558 41.667 0.00 0.00 0.00 3.69
3714 4300 8.627208 AGTTCAGAAACACATGATTTCTATGT 57.373 30.769 21.36 3.78 43.06 2.29
3751 4339 6.535508 AGAATGACATGCATATCTGATCATCG 59.464 38.462 6.52 0.00 35.78 3.84
3814 4404 7.891498 TGCCTTATCAGTAGTGTACTTATCA 57.109 36.000 0.00 0.00 36.76 2.15
3884 4474 4.371855 TCATAGTGACATCAGGAACGTC 57.628 45.455 0.00 0.00 0.00 4.34
3995 4585 8.306761 AGTCAAGGGTGAAATCATTTTTGTATC 58.693 33.333 0.00 0.00 34.87 2.24
4133 4723 9.777008 ATCAGGGTAATTGGGAAAACTTAAATA 57.223 29.630 0.00 0.00 0.00 1.40
4136 4726 8.499288 AAATCAGGGTAATTGGGAAAACTTAA 57.501 30.769 0.00 0.00 0.00 1.85
4145 4735 4.550076 TGCAAAAATCAGGGTAATTGGG 57.450 40.909 0.00 0.00 0.00 4.12
4150 4740 5.186797 CCCTACATTGCAAAAATCAGGGTAA 59.813 40.000 19.33 0.00 37.32 2.85
4195 4785 4.347583 AGAGATTCTGAGGGAGCTTAATGG 59.652 45.833 0.00 0.00 0.00 3.16
4269 4859 4.467438 TCAGATCATGCAACTAGACAGGAA 59.533 41.667 0.00 0.00 29.48 3.36
4270 4860 4.026052 TCAGATCATGCAACTAGACAGGA 58.974 43.478 0.00 0.00 0.00 3.86
4271 4861 4.141981 ACTCAGATCATGCAACTAGACAGG 60.142 45.833 0.00 0.00 0.00 4.00
4272 4862 4.804665 CACTCAGATCATGCAACTAGACAG 59.195 45.833 0.00 0.00 0.00 3.51
4273 4863 4.752146 CACTCAGATCATGCAACTAGACA 58.248 43.478 0.00 0.00 0.00 3.41
4425 5024 6.613153 ACTCCAGAATTAGTTAACTCAGCT 57.387 37.500 12.39 3.03 0.00 4.24
4447 5046 7.309920 TCTTGTCCAGTTAAGACAACAAAAAC 58.690 34.615 5.02 0.00 46.50 2.43
4456 5293 5.927115 AGAATCGTTCTTGTCCAGTTAAGAC 59.073 40.000 0.00 0.00 36.36 3.01
4482 5319 4.760204 AGGATGTGTATGCATGTCATGATG 59.240 41.667 17.24 0.00 36.63 3.07
4483 5320 4.981812 AGGATGTGTATGCATGTCATGAT 58.018 39.130 17.24 9.44 36.63 2.45
4485 5322 4.820173 AGAAGGATGTGTATGCATGTCATG 59.180 41.667 10.16 8.56 36.63 3.07
4574 5411 0.537143 TCAACATTGGTTCGGCAGCT 60.537 50.000 0.00 0.00 34.21 4.24
4576 5413 1.069022 CAGTCAACATTGGTTCGGCAG 60.069 52.381 0.00 0.00 34.21 4.85
4607 5444 1.305201 TTGACACGCTTTTCACCTCC 58.695 50.000 0.00 0.00 0.00 4.30
4645 5482 1.639722 TTCCTTGACCTCATCCGACA 58.360 50.000 0.00 0.00 0.00 4.35
4668 5505 4.316645 TCTATTAGACTCTCCGGTGATCG 58.683 47.826 6.68 0.00 38.88 3.69
4733 5570 6.014156 AGGCTACAGTCACAATCTAACTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
4772 5610 0.473755 TCTGTCTGCAACCACCATGT 59.526 50.000 0.00 0.00 0.00 3.21
4777 5615 3.931578 AGATAACTCTGTCTGCAACCAC 58.068 45.455 0.00 0.00 0.00 4.16
4796 5634 7.984050 CCATCACAAGAGAATAAGAAAGCTAGA 59.016 37.037 0.00 0.00 0.00 2.43
4881 5720 3.429881 GGCATAGCAAAACTGCAAAAGAC 59.570 43.478 0.00 0.00 37.64 3.01
4889 5728 4.098960 AGGAATGATGGCATAGCAAAACTG 59.901 41.667 0.00 0.00 33.44 3.16
4890 5729 4.284178 AGGAATGATGGCATAGCAAAACT 58.716 39.130 0.00 0.00 33.44 2.66
4891 5730 4.660789 AGGAATGATGGCATAGCAAAAC 57.339 40.909 0.00 0.00 33.44 2.43
4892 5731 7.233632 ACTATAGGAATGATGGCATAGCAAAA 58.766 34.615 0.00 0.00 33.44 2.44
4893 5732 6.782986 ACTATAGGAATGATGGCATAGCAAA 58.217 36.000 0.00 0.00 33.44 3.68
4894 5733 6.378661 ACTATAGGAATGATGGCATAGCAA 57.621 37.500 0.00 0.00 33.44 3.91
4895 5734 6.378661 AACTATAGGAATGATGGCATAGCA 57.621 37.500 0.00 0.00 33.44 3.49
4896 5735 6.317391 GGAAACTATAGGAATGATGGCATAGC 59.683 42.308 0.00 0.00 33.44 2.97
4921 5760 2.082366 GCACAACAAGGCGCAATCG 61.082 57.895 10.83 0.00 39.07 3.34
4935 5774 0.532573 GATGAAGAGGAGACGGCACA 59.467 55.000 0.00 0.00 0.00 4.57
4940 5779 6.105333 AGAAAAAGATGATGAAGAGGAGACG 58.895 40.000 0.00 0.00 0.00 4.18
4945 5784 6.148480 ACGACAAGAAAAAGATGATGAAGAGG 59.852 38.462 0.00 0.00 0.00 3.69
4952 5791 6.377327 AACACACGACAAGAAAAAGATGAT 57.623 33.333 0.00 0.00 0.00 2.45
4969 5808 3.057526 GGCTACCCATTGAAGAAACACAC 60.058 47.826 0.00 0.00 0.00 3.82
4972 5811 2.802719 GGGCTACCCATTGAAGAAACA 58.197 47.619 0.00 0.00 44.65 2.83
4984 5823 2.823758 GGCTGGAGATGGGCTACCC 61.824 68.421 0.00 0.00 45.71 3.69
4985 5824 2.072487 TGGCTGGAGATGGGCTACC 61.072 63.158 0.00 0.00 37.24 3.18
4986 5825 1.147153 GTGGCTGGAGATGGGCTAC 59.853 63.158 0.00 0.00 0.00 3.58
4987 5826 0.621571 AAGTGGCTGGAGATGGGCTA 60.622 55.000 0.00 0.00 0.00 3.93
4988 5827 0.621571 TAAGTGGCTGGAGATGGGCT 60.622 55.000 0.00 0.00 0.00 5.19
4989 5828 0.475906 ATAAGTGGCTGGAGATGGGC 59.524 55.000 0.00 0.00 0.00 5.36
4990 5829 1.816961 GCATAAGTGGCTGGAGATGGG 60.817 57.143 0.00 0.00 0.00 4.00
4991 5830 1.134007 TGCATAAGTGGCTGGAGATGG 60.134 52.381 0.00 0.00 0.00 3.51
4992 5831 2.336945 TGCATAAGTGGCTGGAGATG 57.663 50.000 0.00 0.00 0.00 2.90
4993 5832 3.370840 TTTGCATAAGTGGCTGGAGAT 57.629 42.857 0.00 0.00 0.00 2.75
4994 5833 2.877097 TTTGCATAAGTGGCTGGAGA 57.123 45.000 0.00 0.00 0.00 3.71
4995 5834 2.416431 GCTTTTGCATAAGTGGCTGGAG 60.416 50.000 16.75 0.00 46.58 3.86
4996 5835 1.545582 GCTTTTGCATAAGTGGCTGGA 59.454 47.619 16.75 0.00 46.58 3.86
4997 5836 2.000429 GCTTTTGCATAAGTGGCTGG 58.000 50.000 16.75 0.00 46.58 4.85
5137 5980 2.068277 GAATCCAATCGGCCTGCAGC 62.068 60.000 8.66 3.68 42.60 5.25
5139 5982 1.453745 GGAATCCAATCGGCCTGCA 60.454 57.895 0.00 0.00 0.00 4.41
5226 6072 4.329545 GCTCCAGTCGGCCCACAA 62.330 66.667 2.46 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.