Multiple sequence alignment - TraesCS7B01G356700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G356700 chr7B 100.000 4496 0 0 1 4496 617484831 617489326 0.000000e+00 8303
1 TraesCS7B01G356700 chr7B 85.531 2495 315 30 958 3436 616903055 616905519 0.000000e+00 2566
2 TraesCS7B01G356700 chr7B 83.282 2578 352 42 885 3436 616823384 616820860 0.000000e+00 2300
3 TraesCS7B01G356700 chr7B 83.157 2547 375 31 912 3436 616750004 616747490 0.000000e+00 2278
4 TraesCS7B01G356700 chr7B 83.079 2494 371 31 974 3436 617557978 617555505 0.000000e+00 2220
5 TraesCS7B01G356700 chr7B 82.945 2492 386 24 961 3436 616836205 616838673 0.000000e+00 2211
6 TraesCS7B01G356700 chr7B 81.642 1961 325 26 1498 3441 617578218 617580160 0.000000e+00 1594
7 TraesCS7B01G356700 chr7D 94.286 2975 142 11 749 3706 565643395 565646358 0.000000e+00 4527
8 TraesCS7B01G356700 chr7D 83.748 2492 355 32 974 3436 566013942 566016412 0.000000e+00 2313
9 TraesCS7B01G356700 chr7D 83.088 2578 390 28 885 3436 565617261 565619818 0.000000e+00 2303
10 TraesCS7B01G356700 chr7D 83.053 2496 378 33 965 3441 566037423 566039892 0.000000e+00 2224
11 TraesCS7B01G356700 chr7D 95.050 202 9 1 545 746 565643030 565643230 2.610000e-82 316
12 TraesCS7B01G356700 chr7A 84.693 2489 312 32 959 3432 652195159 652197593 0.000000e+00 2422
13 TraesCS7B01G356700 chr7A 94.233 1422 74 3 1450 2868 652232232 652233648 0.000000e+00 2165
14 TraesCS7B01G356700 chr7A 82.617 2491 385 36 974 3436 652286411 652288881 0.000000e+00 2158
15 TraesCS7B01G356700 chr7A 81.674 2592 404 42 880 3441 652356790 652359340 0.000000e+00 2089
16 TraesCS7B01G356700 chr7A 82.988 2028 314 18 1423 3436 652163852 652165862 0.000000e+00 1805
17 TraesCS7B01G356700 chr7A 80.404 2378 424 29 1071 3436 652175089 652177436 0.000000e+00 1772
18 TraesCS7B01G356700 chr7A 84.800 375 57 0 997 1371 652162085 652162459 1.180000e-100 377
19 TraesCS7B01G356700 chr7A 92.857 196 10 1 555 746 652231692 652231887 9.520000e-72 281
20 TraesCS7B01G356700 chr1B 84.724 779 97 12 3729 4491 15173192 15172420 0.000000e+00 760
21 TraesCS7B01G356700 chr1B 89.962 528 27 8 1 506 94600537 94601060 0.000000e+00 658
22 TraesCS7B01G356700 chr1D 83.478 805 105 18 3718 4496 10264896 10264094 0.000000e+00 725
23 TraesCS7B01G356700 chr1D 85.660 530 49 15 1 506 411727265 411727791 2.380000e-147 532
24 TraesCS7B01G356700 chr1A 83.102 793 101 23 3718 4495 11941933 11941159 0.000000e+00 691
25 TraesCS7B01G356700 chr1A 84.358 537 54 16 1 510 520359745 520359212 2.410000e-137 499
26 TraesCS7B01G356700 chr1A 83.240 537 53 13 1 513 531647120 531646597 4.100000e-125 459
27 TraesCS7B01G356700 chr3D 84.688 529 55 14 1 506 526053429 526052904 5.190000e-139 505
28 TraesCS7B01G356700 chr6D 83.459 399 43 14 1 378 343128163 343127767 2.570000e-92 350
29 TraesCS7B01G356700 chr2A 89.669 242 20 2 1 241 137282747 137282984 2.030000e-78 303
30 TraesCS7B01G356700 chr6A 86.822 258 29 2 1 255 570915751 570916006 2.650000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G356700 chr7B 617484831 617489326 4495 False 8303.0 8303 100.000 1 4496 1 chr7B.!!$F3 4495
1 TraesCS7B01G356700 chr7B 616903055 616905519 2464 False 2566.0 2566 85.531 958 3436 1 chr7B.!!$F2 2478
2 TraesCS7B01G356700 chr7B 616820860 616823384 2524 True 2300.0 2300 83.282 885 3436 1 chr7B.!!$R2 2551
3 TraesCS7B01G356700 chr7B 616747490 616750004 2514 True 2278.0 2278 83.157 912 3436 1 chr7B.!!$R1 2524
4 TraesCS7B01G356700 chr7B 617555505 617557978 2473 True 2220.0 2220 83.079 974 3436 1 chr7B.!!$R3 2462
5 TraesCS7B01G356700 chr7B 616836205 616838673 2468 False 2211.0 2211 82.945 961 3436 1 chr7B.!!$F1 2475
6 TraesCS7B01G356700 chr7B 617578218 617580160 1942 False 1594.0 1594 81.642 1498 3441 1 chr7B.!!$F4 1943
7 TraesCS7B01G356700 chr7D 565643030 565646358 3328 False 2421.5 4527 94.668 545 3706 2 chr7D.!!$F4 3161
8 TraesCS7B01G356700 chr7D 566013942 566016412 2470 False 2313.0 2313 83.748 974 3436 1 chr7D.!!$F2 2462
9 TraesCS7B01G356700 chr7D 565617261 565619818 2557 False 2303.0 2303 83.088 885 3436 1 chr7D.!!$F1 2551
10 TraesCS7B01G356700 chr7D 566037423 566039892 2469 False 2224.0 2224 83.053 965 3441 1 chr7D.!!$F3 2476
11 TraesCS7B01G356700 chr7A 652195159 652197593 2434 False 2422.0 2422 84.693 959 3432 1 chr7A.!!$F2 2473
12 TraesCS7B01G356700 chr7A 652286411 652288881 2470 False 2158.0 2158 82.617 974 3436 1 chr7A.!!$F3 2462
13 TraesCS7B01G356700 chr7A 652356790 652359340 2550 False 2089.0 2089 81.674 880 3441 1 chr7A.!!$F4 2561
14 TraesCS7B01G356700 chr7A 652175089 652177436 2347 False 1772.0 1772 80.404 1071 3436 1 chr7A.!!$F1 2365
15 TraesCS7B01G356700 chr7A 652231692 652233648 1956 False 1223.0 2165 93.545 555 2868 2 chr7A.!!$F6 2313
16 TraesCS7B01G356700 chr7A 652162085 652165862 3777 False 1091.0 1805 83.894 997 3436 2 chr7A.!!$F5 2439
17 TraesCS7B01G356700 chr1B 15172420 15173192 772 True 760.0 760 84.724 3729 4491 1 chr1B.!!$R1 762
18 TraesCS7B01G356700 chr1B 94600537 94601060 523 False 658.0 658 89.962 1 506 1 chr1B.!!$F1 505
19 TraesCS7B01G356700 chr1D 10264094 10264896 802 True 725.0 725 83.478 3718 4496 1 chr1D.!!$R1 778
20 TraesCS7B01G356700 chr1D 411727265 411727791 526 False 532.0 532 85.660 1 506 1 chr1D.!!$F1 505
21 TraesCS7B01G356700 chr1A 11941159 11941933 774 True 691.0 691 83.102 3718 4495 1 chr1A.!!$R1 777
22 TraesCS7B01G356700 chr1A 520359212 520359745 533 True 499.0 499 84.358 1 510 1 chr1A.!!$R2 509
23 TraesCS7B01G356700 chr1A 531646597 531647120 523 True 459.0 459 83.240 1 513 1 chr1A.!!$R3 512
24 TraesCS7B01G356700 chr3D 526052904 526053429 525 True 505.0 505 84.688 1 506 1 chr3D.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 778 0.035458 AGAAAGACCCGCCACAGAAG 59.965 55.0 0.00 0.0 0.00 2.85 F
786 992 0.038159 ACTCTCGAGCCACCGAAAAG 60.038 55.0 7.81 0.0 38.17 2.27 F
1847 3467 0.108520 AAGGTGTACGTATGGGTGCG 60.109 55.0 0.00 0.0 39.48 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 4087 2.028130 CCAGTCGTCTTCTCCTAGCAT 58.972 52.381 0.0 0.0 0.00 3.79 R
2898 4566 4.186159 TGATGTCACAGTGTATGATGCAG 58.814 43.478 0.0 0.0 0.00 4.41 R
3707 5403 0.335705 TCATAGGACCCCCGTGTACA 59.664 55.000 0.0 0.0 37.58 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 252 8.979574 GATTCTAATCAATAAAGGTGTCTACCG 58.020 37.037 0.00 0.00 42.22 4.02
513 546 9.201989 TGACAGTTATCATAGTCCTAAGTTGAT 57.798 33.333 0.00 0.00 0.00 2.57
515 548 9.823647 ACAGTTATCATAGTCCTAAGTTGATTG 57.176 33.333 0.00 0.00 0.00 2.67
516 549 8.768955 CAGTTATCATAGTCCTAAGTTGATTGC 58.231 37.037 0.00 0.00 0.00 3.56
517 550 8.486210 AGTTATCATAGTCCTAAGTTGATTGCA 58.514 33.333 0.00 0.00 0.00 4.08
518 551 8.552034 GTTATCATAGTCCTAAGTTGATTGCAC 58.448 37.037 0.00 0.00 0.00 4.57
519 552 6.299805 TCATAGTCCTAAGTTGATTGCACT 57.700 37.500 0.00 0.00 0.00 4.40
520 553 6.341316 TCATAGTCCTAAGTTGATTGCACTC 58.659 40.000 0.00 0.00 0.00 3.51
521 554 4.623932 AGTCCTAAGTTGATTGCACTCA 57.376 40.909 2.07 2.07 0.00 3.41
522 555 4.973168 AGTCCTAAGTTGATTGCACTCAA 58.027 39.130 14.86 14.86 36.51 3.02
523 556 5.564550 AGTCCTAAGTTGATTGCACTCAAT 58.435 37.500 20.72 9.88 45.04 2.57
524 557 6.711277 AGTCCTAAGTTGATTGCACTCAATA 58.289 36.000 20.72 10.44 42.60 1.90
525 558 6.820656 AGTCCTAAGTTGATTGCACTCAATAG 59.179 38.462 20.72 17.67 42.60 1.73
526 559 6.595716 GTCCTAAGTTGATTGCACTCAATAGT 59.404 38.462 20.72 12.19 42.60 2.12
527 560 7.764443 GTCCTAAGTTGATTGCACTCAATAGTA 59.236 37.037 20.72 12.59 42.60 1.82
528 561 8.318412 TCCTAAGTTGATTGCACTCAATAGTAA 58.682 33.333 20.72 8.48 42.60 2.24
529 562 8.946085 CCTAAGTTGATTGCACTCAATAGTAAA 58.054 33.333 20.72 5.31 42.60 2.01
530 563 9.760660 CTAAGTTGATTGCACTCAATAGTAAAC 57.239 33.333 20.72 8.41 42.60 2.01
531 564 7.986085 AGTTGATTGCACTCAATAGTAAACT 57.014 32.000 20.72 10.40 42.60 2.66
532 565 9.502091 AAGTTGATTGCACTCAATAGTAAACTA 57.498 29.630 20.72 0.00 42.60 2.24
533 566 9.502091 AGTTGATTGCACTCAATAGTAAACTAA 57.498 29.630 20.72 0.00 42.60 2.24
534 567 9.543018 GTTGATTGCACTCAATAGTAAACTAAC 57.457 33.333 20.72 2.61 42.60 2.34
535 568 9.502091 TTGATTGCACTCAATAGTAAACTAACT 57.498 29.630 14.86 0.00 42.60 2.24
540 573 9.635520 TGCACTCAATAGTAAACTAACTAGAAC 57.364 33.333 0.00 0.00 35.50 3.01
541 574 8.796278 GCACTCAATAGTAAACTAACTAGAACG 58.204 37.037 0.00 0.00 35.50 3.95
552 585 6.837471 ACTAACTAGAACGAGAAAGATGGT 57.163 37.500 0.00 0.00 0.00 3.55
553 586 6.854778 ACTAACTAGAACGAGAAAGATGGTC 58.145 40.000 0.00 0.00 0.00 4.02
595 628 3.059868 GCATTTCGTTCACTCGTCTTTGA 60.060 43.478 0.00 0.00 0.00 2.69
602 635 4.723862 CGTTCACTCGTCTTTGAACTTTTG 59.276 41.667 11.52 0.00 46.32 2.44
698 731 2.900546 AGAATGGTCTCAAGGTCTCGTT 59.099 45.455 0.00 0.00 0.00 3.85
702 735 4.252971 TGGTCTCAAGGTCTCGTTAAAG 57.747 45.455 0.00 0.00 0.00 1.85
740 778 0.035458 AGAAAGACCCGCCACAGAAG 59.965 55.000 0.00 0.00 0.00 2.85
746 784 0.542232 ACCCGCCACAGAAGACTACT 60.542 55.000 0.00 0.00 0.00 2.57
747 785 0.173708 CCCGCCACAGAAGACTACTC 59.826 60.000 0.00 0.00 0.00 2.59
755 961 2.814919 ACAGAAGACTACTCAGGTCACG 59.185 50.000 0.00 0.00 36.29 4.35
757 963 2.161030 GAAGACTACTCAGGTCACGGT 58.839 52.381 0.00 0.00 36.29 4.83
780 986 2.750637 TCGGACTCTCGAGCCACC 60.751 66.667 7.81 9.32 34.82 4.61
786 992 0.038159 ACTCTCGAGCCACCGAAAAG 60.038 55.000 7.81 0.00 38.17 2.27
812 1020 0.467290 ACGGCACAGACCAAACCATT 60.467 50.000 0.00 0.00 0.00 3.16
813 1021 1.202830 ACGGCACAGACCAAACCATTA 60.203 47.619 0.00 0.00 0.00 1.90
815 1023 2.351350 CGGCACAGACCAAACCATTAAC 60.351 50.000 0.00 0.00 0.00 2.01
843 1051 3.605634 AGAGCCATACACGCATTTTACA 58.394 40.909 0.00 0.00 0.00 2.41
844 1052 3.374058 AGAGCCATACACGCATTTTACAC 59.626 43.478 0.00 0.00 0.00 2.90
845 1053 3.343617 AGCCATACACGCATTTTACACT 58.656 40.909 0.00 0.00 0.00 3.55
846 1054 3.374058 AGCCATACACGCATTTTACACTC 59.626 43.478 0.00 0.00 0.00 3.51
847 1055 3.486875 GCCATACACGCATTTTACACTCC 60.487 47.826 0.00 0.00 0.00 3.85
874 1082 3.055719 CACCGTGGCCGCTTTGAT 61.056 61.111 15.69 0.00 0.00 2.57
878 1086 1.154225 CGTGGCCGCTTTGATTGAC 60.154 57.895 15.69 0.00 0.00 3.18
1027 1261 1.557371 TGATCATGGCCACCTTCGTAA 59.443 47.619 8.16 0.00 0.00 3.18
1102 1351 4.643387 GTCCACTGCGGGGCAACT 62.643 66.667 0.00 0.00 38.41 3.16
1111 1360 2.345991 GGGGCAACTACACGCTGA 59.654 61.111 0.00 0.00 0.00 4.26
1404 1656 3.050275 GGCAGGAACACAGCGGAC 61.050 66.667 0.00 0.00 0.00 4.79
1449 3057 4.072088 GTTGACGGCGGCAACTCG 62.072 66.667 42.37 0.22 41.71 4.18
1527 3135 1.376037 GGTCGGGGAGAACAAGCTG 60.376 63.158 0.00 0.00 36.33 4.24
1545 3153 2.758327 ACCGGCGAGTATCAGGCA 60.758 61.111 9.30 0.00 34.86 4.75
1839 3459 0.604578 GCCAGGTGAAGGTGTACGTA 59.395 55.000 0.00 0.00 0.00 3.57
1847 3467 0.108520 AAGGTGTACGTATGGGTGCG 60.109 55.000 0.00 0.00 39.48 5.34
1906 3542 1.371267 GTGCAGTGCGACGTCTACA 60.371 57.895 14.70 9.03 0.00 2.74
1907 3543 0.937699 GTGCAGTGCGACGTCTACAA 60.938 55.000 14.70 0.70 0.00 2.41
2117 3753 3.371063 GCTCCCCGACGACTCACA 61.371 66.667 0.00 0.00 0.00 3.58
2181 3817 5.857268 ACTTGCCAAAATAATTGCTCTTGT 58.143 33.333 0.00 0.00 0.00 3.16
2751 4419 1.511850 TCTACTCGTCGGACGTTGAA 58.488 50.000 27.53 9.71 43.14 2.69
2898 4566 2.877974 GCACCACGGTTGTCACGAC 61.878 63.158 0.00 0.00 34.93 4.34
3002 4670 2.040606 GCTGGTGGGGAGGGACTA 59.959 66.667 0.00 0.00 41.55 2.59
3015 4683 2.432628 GACTACAGCCGCGCACTT 60.433 61.111 8.75 0.00 0.00 3.16
3207 4888 1.555533 GATTCGTGGACCTTCTTCCCT 59.444 52.381 0.00 0.00 34.33 4.20
3501 5196 3.040147 ACACATTCGGACTAGGTGTTG 57.960 47.619 0.00 0.00 39.48 3.33
3508 5203 2.557056 TCGGACTAGGTGTTGAAGTCAG 59.443 50.000 0.00 0.49 41.15 3.51
3519 5214 0.031585 TGAAGTCAGCGTTGCGTACT 59.968 50.000 0.00 0.00 31.76 2.73
3520 5215 1.267533 TGAAGTCAGCGTTGCGTACTA 59.732 47.619 0.00 0.00 30.67 1.82
3521 5216 1.912110 GAAGTCAGCGTTGCGTACTAG 59.088 52.381 0.00 0.00 30.67 2.57
3572 5268 3.283259 TCGAATCAGTCAGGAGAGCTA 57.717 47.619 0.00 0.00 0.00 3.32
3581 5277 3.129871 GTCAGGAGAGCTACATGCATTC 58.870 50.000 0.00 0.00 45.94 2.67
3608 5304 1.595929 GGAACGGAAGCACGACCAA 60.596 57.895 2.50 0.00 37.61 3.67
3623 5319 2.483877 CGACCAATTCAGCAGCTACAAA 59.516 45.455 0.00 0.00 0.00 2.83
3643 5339 7.054491 ACAAATCCAACAAATCAAAGCTACT 57.946 32.000 0.00 0.00 0.00 2.57
3644 5340 8.177119 ACAAATCCAACAAATCAAAGCTACTA 57.823 30.769 0.00 0.00 0.00 1.82
3645 5341 8.082242 ACAAATCCAACAAATCAAAGCTACTAC 58.918 33.333 0.00 0.00 0.00 2.73
3650 5346 6.359617 CCAACAAATCAAAGCTACTACAAACG 59.640 38.462 0.00 0.00 0.00 3.60
3674 5370 4.213482 GGCTAAAACGACAAGACAAGACAT 59.787 41.667 0.00 0.00 0.00 3.06
3696 5392 7.826690 ACATAAAAGGTTAACATGATGACCAC 58.173 34.615 17.53 0.00 34.60 4.16
3706 5402 8.395633 GTTAACATGATGACCACCACTAATAAC 58.604 37.037 0.00 0.00 0.00 1.89
3707 5403 6.313519 ACATGATGACCACCACTAATAACT 57.686 37.500 0.00 0.00 0.00 2.24
3708 5404 6.115446 ACATGATGACCACCACTAATAACTG 58.885 40.000 0.00 0.00 0.00 3.16
3709 5405 5.755409 TGATGACCACCACTAATAACTGT 57.245 39.130 0.00 0.00 0.00 3.55
3710 5406 6.860790 TGATGACCACCACTAATAACTGTA 57.139 37.500 0.00 0.00 0.00 2.74
3711 5407 6.636705 TGATGACCACCACTAATAACTGTAC 58.363 40.000 0.00 0.00 0.00 2.90
3712 5408 6.211785 TGATGACCACCACTAATAACTGTACA 59.788 38.462 0.00 0.00 0.00 2.90
3713 5409 5.786311 TGACCACCACTAATAACTGTACAC 58.214 41.667 0.00 0.00 0.00 2.90
3714 5410 4.813027 ACCACCACTAATAACTGTACACG 58.187 43.478 0.00 0.00 0.00 4.49
3715 5411 4.178540 CCACCACTAATAACTGTACACGG 58.821 47.826 0.00 0.00 0.00 4.94
3716 5412 4.178540 CACCACTAATAACTGTACACGGG 58.821 47.826 0.00 0.00 0.00 5.28
3723 5419 0.114954 AACTGTACACGGGGGTCCTA 59.885 55.000 0.00 0.00 0.00 2.94
3743 5442 5.076182 CCTATGACCTCTCTCTGATGCTAA 58.924 45.833 0.00 0.00 0.00 3.09
3747 5446 5.946486 TGACCTCTCTCTGATGCTAATCTA 58.054 41.667 0.00 0.00 33.61 1.98
3748 5447 6.551085 TGACCTCTCTCTGATGCTAATCTAT 58.449 40.000 0.00 0.00 33.61 1.98
3755 5454 8.922237 TCTCTCTGATGCTAATCTATTGTCTTT 58.078 33.333 0.00 0.00 33.61 2.52
3791 5491 4.868314 TTTGTGACATGATTGGCAATGA 57.132 36.364 19.07 10.17 44.33 2.57
3796 5496 4.860907 GTGACATGATTGGCAATGAACTTC 59.139 41.667 19.07 7.89 44.33 3.01
3801 5501 4.661222 TGATTGGCAATGAACTTCCACTA 58.339 39.130 19.07 0.00 0.00 2.74
3808 5508 8.133024 TGGCAATGAACTTCCACTATAATTTT 57.867 30.769 0.00 0.00 0.00 1.82
3854 5554 6.321848 TCGTGAGTTACTAGATGTTTCACA 57.678 37.500 0.00 0.00 35.22 3.58
3859 5559 7.815068 GTGAGTTACTAGATGTTTCACATGAGT 59.185 37.037 0.00 0.98 39.27 3.41
3871 5571 0.321671 ACATGAGTTGTCTGGGGTCG 59.678 55.000 0.00 0.00 30.89 4.79
3888 5588 3.114065 GGTCGGTGATAGATCGTTGAAC 58.886 50.000 0.00 0.00 0.00 3.18
3893 5593 4.250464 GGTGATAGATCGTTGAACCACAA 58.750 43.478 0.00 0.00 36.02 3.33
3894 5594 4.876107 GGTGATAGATCGTTGAACCACAAT 59.124 41.667 0.00 0.00 40.76 2.71
3897 5597 5.584649 TGATAGATCGTTGAACCACAATTCC 59.415 40.000 0.00 0.00 40.76 3.01
3898 5598 2.742053 AGATCGTTGAACCACAATTCCG 59.258 45.455 0.00 0.00 40.76 4.30
3902 5602 0.313672 TTGAACCACAATTCCGCTGC 59.686 50.000 0.00 0.00 33.18 5.25
3904 5604 1.271108 TGAACCACAATTCCGCTGCTA 60.271 47.619 0.00 0.00 0.00 3.49
3906 5606 0.613260 ACCACAATTCCGCTGCTAGA 59.387 50.000 0.00 0.00 0.00 2.43
3912 5612 5.009010 CCACAATTCCGCTGCTAGAAATTAT 59.991 40.000 6.15 0.00 0.00 1.28
3915 5615 8.292448 CACAATTCCGCTGCTAGAAATTATATT 58.708 33.333 6.15 0.00 0.00 1.28
3942 5642 6.148948 CGAAGCAAACCATACAGAATTTTCA 58.851 36.000 0.00 0.00 0.00 2.69
3980 5683 5.211973 AGAATACTAGGAGGAGCACATTCA 58.788 41.667 0.00 0.00 0.00 2.57
3995 5698 4.741676 GCACATTCACTTTCTGTTTCCTTG 59.258 41.667 0.00 0.00 0.00 3.61
4003 5706 8.402798 TCACTTTCTGTTTCCTTGCATAATTA 57.597 30.769 0.00 0.00 0.00 1.40
4039 5742 2.113860 AATGATTCCCAGTGGTGACG 57.886 50.000 8.74 0.00 0.00 4.35
4186 5892 5.136816 TGCTTTAATGAACATGCACACAT 57.863 34.783 0.00 0.00 36.79 3.21
4189 5895 5.061311 GCTTTAATGAACATGCACACATCAC 59.939 40.000 0.00 0.00 32.87 3.06
4190 5896 5.963176 TTAATGAACATGCACACATCACT 57.037 34.783 0.00 0.00 32.87 3.41
4193 5899 5.556355 ATGAACATGCACACATCACTTAG 57.444 39.130 0.00 0.00 32.87 2.18
4202 5908 2.005451 CACATCACTTAGCCAGCACTC 58.995 52.381 0.00 0.00 0.00 3.51
4212 5918 1.022735 GCCAGCACTCATGAGAATGG 58.977 55.000 29.27 27.87 34.42 3.16
4213 5919 1.022735 CCAGCACTCATGAGAATGGC 58.977 55.000 29.27 22.88 0.00 4.40
4214 5920 1.680860 CCAGCACTCATGAGAATGGCA 60.681 52.381 29.27 0.00 0.00 4.92
4215 5921 2.298610 CAGCACTCATGAGAATGGCAT 58.701 47.619 29.27 12.52 0.00 4.40
4216 5922 2.033424 CAGCACTCATGAGAATGGCATG 59.967 50.000 29.27 15.31 43.39 4.06
4217 5923 1.269102 GCACTCATGAGAATGGCATGC 60.269 52.381 29.27 20.82 42.13 4.06
4219 5925 2.623416 CACTCATGAGAATGGCATGCAT 59.377 45.455 29.27 8.40 42.13 3.96
4220 5926 2.623416 ACTCATGAGAATGGCATGCATG 59.377 45.455 29.27 22.70 42.13 4.06
4237 5952 6.793203 GCATGCATGTTTTTCTTTTACATGTG 59.207 34.615 26.79 7.97 46.73 3.21
4266 5981 7.918536 AGCATCTGTAAATCATATCCATGTC 57.081 36.000 0.00 0.00 33.57 3.06
4268 5983 8.819845 AGCATCTGTAAATCATATCCATGTCTA 58.180 33.333 0.00 0.00 33.57 2.59
4275 5990 9.429359 GTAAATCATATCCATGTCTAAGACTGG 57.571 37.037 0.00 0.00 34.53 4.00
4279 5994 2.820178 TCCATGTCTAAGACTGGCTGA 58.180 47.619 0.00 0.00 33.82 4.26
4289 6004 7.044798 GTCTAAGACTGGCTGAAGTAATGAAT 58.955 38.462 0.00 0.00 0.00 2.57
4290 6005 7.550906 GTCTAAGACTGGCTGAAGTAATGAATT 59.449 37.037 0.00 0.00 0.00 2.17
4300 6015 8.462016 GGCTGAAGTAATGAATTATGAAACAGT 58.538 33.333 0.00 0.00 0.00 3.55
4344 6059 3.340814 TTCATTTCTGGCCTCTCTGTC 57.659 47.619 3.32 0.00 0.00 3.51
4345 6060 1.556911 TCATTTCTGGCCTCTCTGTCC 59.443 52.381 3.32 0.00 0.00 4.02
4346 6061 1.558756 CATTTCTGGCCTCTCTGTCCT 59.441 52.381 3.32 0.00 0.00 3.85
4347 6062 0.979665 TTTCTGGCCTCTCTGTCCTG 59.020 55.000 3.32 0.00 0.00 3.86
4348 6063 0.178921 TTCTGGCCTCTCTGTCCTGT 60.179 55.000 3.32 0.00 0.00 4.00
4350 6065 0.689623 CTGGCCTCTCTGTCCTGTTT 59.310 55.000 3.32 0.00 0.00 2.83
4351 6066 0.397941 TGGCCTCTCTGTCCTGTTTG 59.602 55.000 3.32 0.00 0.00 2.93
4359 6074 5.127845 CCTCTCTGTCCTGTTTGCTTATAGA 59.872 44.000 0.00 0.00 0.00 1.98
4362 6077 3.857052 TGTCCTGTTTGCTTATAGACCG 58.143 45.455 0.00 0.00 0.00 4.79
4371 6086 8.415192 TGTTTGCTTATAGACCGTAAGTAATG 57.585 34.615 0.00 0.00 34.98 1.90
4412 6130 6.952935 AAGAACTTACATTCTACGAGCAAG 57.047 37.500 0.00 0.00 37.99 4.01
4416 6135 8.251721 AGAACTTACATTCTACGAGCAAGTAAT 58.748 33.333 0.00 0.00 37.16 1.89
4421 6140 7.096884 ACATTCTACGAGCAAGTAATAGTCA 57.903 36.000 0.00 0.00 0.00 3.41
4427 6146 8.467598 TCTACGAGCAAGTAATAGTCATTTCTT 58.532 33.333 0.00 0.00 33.47 2.52
4428 6147 7.527084 ACGAGCAAGTAATAGTCATTTCTTC 57.473 36.000 0.00 0.00 31.54 2.87
4429 6148 6.535508 ACGAGCAAGTAATAGTCATTTCTTCC 59.464 38.462 0.00 0.00 31.54 3.46
4442 6161 6.708054 AGTCATTTCTTCCTCACAACTGTAAG 59.292 38.462 0.00 0.00 42.29 2.34
4464 6189 9.130312 GTAAGCTGATCTTGTAATTATCTACGG 57.870 37.037 0.00 0.00 36.25 4.02
4480 6205 8.514330 TTATCTACGGTGGCATTTCTTATTTT 57.486 30.769 0.00 0.00 0.00 1.82
4486 6212 8.250538 ACGGTGGCATTTCTTATTTTTATTTG 57.749 30.769 0.00 0.00 0.00 2.32
4487 6213 7.875554 ACGGTGGCATTTCTTATTTTTATTTGT 59.124 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.872920 TCCTTTTCATATGCAAATTACCACC 58.127 36.000 0.89 0.00 0.00 4.61
237 246 2.022195 GTCACATCCAGCTACGGTAGA 58.978 52.381 19.02 0.00 0.00 2.59
241 250 1.226974 CCGTCACATCCAGCTACGG 60.227 63.158 7.52 7.52 46.04 4.02
243 252 0.246635 ACACCGTCACATCCAGCTAC 59.753 55.000 0.00 0.00 0.00 3.58
298 327 4.749976 TGGGCAGACAACTGTTTAAAAAC 58.250 39.130 0.00 0.00 45.04 2.43
333 362 1.705997 AACTCTGAGGTTGCGGGGTT 61.706 55.000 9.85 0.00 33.07 4.11
410 439 3.499563 CCCTTCGATCTACCTCCTCTCAT 60.500 52.174 0.00 0.00 0.00 2.90
514 547 9.635520 GTTCTAGTTAGTTTACTATTGAGTGCA 57.364 33.333 0.00 0.00 36.28 4.57
515 548 8.796278 CGTTCTAGTTAGTTTACTATTGAGTGC 58.204 37.037 0.00 0.00 36.28 4.40
524 557 9.843334 CATCTTTCTCGTTCTAGTTAGTTTACT 57.157 33.333 0.00 0.00 0.00 2.24
525 558 9.074443 CCATCTTTCTCGTTCTAGTTAGTTTAC 57.926 37.037 0.00 0.00 0.00 2.01
526 559 8.800332 ACCATCTTTCTCGTTCTAGTTAGTTTA 58.200 33.333 0.00 0.00 0.00 2.01
527 560 7.668492 ACCATCTTTCTCGTTCTAGTTAGTTT 58.332 34.615 0.00 0.00 0.00 2.66
528 561 7.039923 TGACCATCTTTCTCGTTCTAGTTAGTT 60.040 37.037 0.00 0.00 0.00 2.24
529 562 6.433404 TGACCATCTTTCTCGTTCTAGTTAGT 59.567 38.462 0.00 0.00 0.00 2.24
530 563 6.853720 TGACCATCTTTCTCGTTCTAGTTAG 58.146 40.000 0.00 0.00 0.00 2.34
531 564 6.829229 TGACCATCTTTCTCGTTCTAGTTA 57.171 37.500 0.00 0.00 0.00 2.24
532 565 5.723672 TGACCATCTTTCTCGTTCTAGTT 57.276 39.130 0.00 0.00 0.00 2.24
533 566 5.723672 TTGACCATCTTTCTCGTTCTAGT 57.276 39.130 0.00 0.00 0.00 2.57
534 567 7.331934 TGAATTTGACCATCTTTCTCGTTCTAG 59.668 37.037 0.00 0.00 0.00 2.43
535 568 7.158697 TGAATTTGACCATCTTTCTCGTTCTA 58.841 34.615 0.00 0.00 0.00 2.10
536 569 5.997746 TGAATTTGACCATCTTTCTCGTTCT 59.002 36.000 0.00 0.00 0.00 3.01
537 570 6.241207 TGAATTTGACCATCTTTCTCGTTC 57.759 37.500 0.00 0.00 0.00 3.95
538 571 6.824305 ATGAATTTGACCATCTTTCTCGTT 57.176 33.333 0.00 0.00 0.00 3.85
539 572 6.430925 TCAATGAATTTGACCATCTTTCTCGT 59.569 34.615 0.00 0.00 39.44 4.18
540 573 6.845302 TCAATGAATTTGACCATCTTTCTCG 58.155 36.000 0.00 0.00 39.44 4.04
552 585 6.587206 TGCACCAATAGTCAATGAATTTGA 57.413 33.333 0.00 0.00 42.09 2.69
553 586 7.837202 AATGCACCAATAGTCAATGAATTTG 57.163 32.000 0.00 0.00 36.61 2.32
595 628 8.023706 GTCTTCTGAGAAGTTGTTTCAAAAGTT 58.976 33.333 20.59 0.00 38.31 2.66
740 778 0.810016 GGACCGTGACCTGAGTAGTC 59.190 60.000 0.00 0.00 34.72 2.59
746 784 1.873270 CGACATGGACCGTGACCTGA 61.873 60.000 20.86 0.00 0.00 3.86
747 785 1.446099 CGACATGGACCGTGACCTG 60.446 63.158 20.86 3.13 0.00 4.00
773 979 3.424433 CGTTGATTACTTTTCGGTGGCTC 60.424 47.826 0.00 0.00 0.00 4.70
780 986 3.185594 TCTGTGCCGTTGATTACTTTTCG 59.814 43.478 0.00 0.00 0.00 3.46
786 992 1.803334 TGGTCTGTGCCGTTGATTAC 58.197 50.000 0.00 0.00 0.00 1.89
812 1020 3.724374 GTGTATGGCTCTTATGGCGTTA 58.276 45.455 0.00 0.00 33.67 3.18
813 1021 2.561569 GTGTATGGCTCTTATGGCGTT 58.438 47.619 0.00 0.00 33.67 4.84
815 1023 1.139989 CGTGTATGGCTCTTATGGCG 58.860 55.000 0.00 0.00 35.06 5.69
843 1051 0.404812 ACGGTGTGGAGTAGAGGAGT 59.595 55.000 0.00 0.00 0.00 3.85
844 1052 0.811915 CACGGTGTGGAGTAGAGGAG 59.188 60.000 0.00 0.00 0.00 3.69
845 1053 2.957060 CACGGTGTGGAGTAGAGGA 58.043 57.895 0.00 0.00 0.00 3.71
874 1082 0.779408 CACGTGCGTGTATTCGTCAA 59.221 50.000 15.60 0.00 40.91 3.18
1089 1338 2.032071 GTGTAGTTGCCCCGCAGT 59.968 61.111 0.00 0.00 40.61 4.40
1102 1351 1.138883 GTGCCGAGATCAGCGTGTA 59.861 57.895 0.00 0.00 0.00 2.90
1111 1360 2.129555 AACTTGCCCTGTGCCGAGAT 62.130 55.000 0.00 0.00 40.16 2.75
1449 3057 1.092921 TCTGCCACAACACGTTGGAC 61.093 55.000 14.07 3.99 44.45 4.02
1527 3135 2.027751 GCCTGATACTCGCCGGTC 59.972 66.667 1.90 0.00 0.00 4.79
1545 3153 3.598715 TTCCGCCACGACGTCAGT 61.599 61.111 17.16 11.57 0.00 3.41
1902 3538 3.558411 GCGCCGCAGAGCTTGTAG 61.558 66.667 3.15 0.00 0.00 2.74
2444 4087 2.028130 CCAGTCGTCTTCTCCTAGCAT 58.972 52.381 0.00 0.00 0.00 3.79
2898 4566 4.186159 TGATGTCACAGTGTATGATGCAG 58.814 43.478 0.00 0.00 0.00 4.41
2967 4635 0.960364 GCTTTGCCATCCCGAAGTCA 60.960 55.000 0.00 0.00 0.00 3.41
3002 4670 4.351938 TCGTAAGTGCGCGGCTGT 62.352 61.111 8.83 0.00 39.48 4.40
3015 4683 4.460683 GTGCCCCGCATGGTCGTA 62.461 66.667 0.00 0.00 41.91 3.43
3207 4888 3.012119 TTCCCCGCAGCCCATACA 61.012 61.111 0.00 0.00 0.00 2.29
3447 5142 2.159653 CGTGTAAGAAGATTGGTGCAGC 60.160 50.000 9.47 9.47 0.00 5.25
3452 5147 3.326747 GTCAGCGTGTAAGAAGATTGGT 58.673 45.455 0.00 0.00 0.00 3.67
3501 5196 1.912110 CTAGTACGCAACGCTGACTTC 59.088 52.381 0.00 0.00 0.00 3.01
3508 5203 2.172365 GACAGTACTAGTACGCAACGC 58.828 52.381 23.87 10.34 40.80 4.84
3519 5214 3.377439 CACACGTGCTTTGACAGTACTA 58.623 45.455 17.22 0.00 36.00 1.82
3520 5215 2.201732 CACACGTGCTTTGACAGTACT 58.798 47.619 17.22 0.00 36.00 2.73
3521 5216 1.260561 CCACACGTGCTTTGACAGTAC 59.739 52.381 17.22 0.00 34.84 2.73
3560 5256 2.906691 ATGCATGTAGCTCTCCTGAC 57.093 50.000 0.00 0.00 45.94 3.51
3572 5268 4.260170 GTTCCTCTCTCTTGAATGCATGT 58.740 43.478 0.00 0.00 0.00 3.21
3581 5277 1.273606 TGCTTCCGTTCCTCTCTCTTG 59.726 52.381 0.00 0.00 0.00 3.02
3608 5304 4.081406 TGTTGGATTTGTAGCTGCTGAAT 58.919 39.130 13.43 9.65 0.00 2.57
3623 5319 7.759489 TTGTAGTAGCTTTGATTTGTTGGAT 57.241 32.000 0.00 0.00 0.00 3.41
3643 5339 2.831333 TGTCGTTTTAGCCCGTTTGTA 58.169 42.857 0.00 0.00 0.00 2.41
3644 5340 1.666054 TGTCGTTTTAGCCCGTTTGT 58.334 45.000 0.00 0.00 0.00 2.83
3645 5341 2.288458 TCTTGTCGTTTTAGCCCGTTTG 59.712 45.455 0.00 0.00 0.00 2.93
3650 5346 3.059120 GTCTTGTCTTGTCGTTTTAGCCC 60.059 47.826 0.00 0.00 0.00 5.19
3674 5370 6.207810 GTGGTGGTCATCATGTTAACCTTTTA 59.792 38.462 2.48 0.00 32.82 1.52
3696 5392 3.431207 CCCCCGTGTACAGTTATTAGTGG 60.431 52.174 0.00 0.00 0.00 4.00
3706 5402 0.750850 CATAGGACCCCCGTGTACAG 59.249 60.000 0.00 0.00 37.58 2.74
3707 5403 0.335705 TCATAGGACCCCCGTGTACA 59.664 55.000 0.00 0.00 37.58 2.90
3708 5404 0.749049 GTCATAGGACCCCCGTGTAC 59.251 60.000 0.00 0.00 38.12 2.90
3709 5405 3.212377 GTCATAGGACCCCCGTGTA 57.788 57.895 0.00 0.00 38.12 2.90
3710 5406 4.045469 GTCATAGGACCCCCGTGT 57.955 61.111 0.00 0.00 38.12 4.49
3723 5419 5.396485 AGATTAGCATCAGAGAGAGGTCAT 58.604 41.667 0.00 0.00 0.00 3.06
3801 5501 7.334421 CGGTCTGCATAGCCACTATAAAATTAT 59.666 37.037 0.00 0.00 0.00 1.28
3808 5508 1.893137 CCGGTCTGCATAGCCACTATA 59.107 52.381 0.00 0.00 0.00 1.31
3810 5510 0.396556 TCCGGTCTGCATAGCCACTA 60.397 55.000 0.00 0.00 0.00 2.74
3854 5554 0.836400 ACCGACCCCAGACAACTCAT 60.836 55.000 0.00 0.00 0.00 2.90
3859 5559 1.191535 CTATCACCGACCCCAGACAA 58.808 55.000 0.00 0.00 0.00 3.18
3871 5571 3.857052 TGTGGTTCAACGATCTATCACC 58.143 45.455 0.00 0.00 0.00 4.02
3888 5588 1.737838 TTCTAGCAGCGGAATTGTGG 58.262 50.000 0.00 0.00 0.00 4.17
3893 5593 7.010552 CGCTAATATAATTTCTAGCAGCGGAAT 59.989 37.037 4.36 0.00 44.00 3.01
3894 5594 6.310467 CGCTAATATAATTTCTAGCAGCGGAA 59.690 38.462 4.36 0.64 44.00 4.30
3898 5598 7.148573 TGCTTCGCTAATATAATTTCTAGCAGC 60.149 37.037 0.00 7.01 37.13 5.25
3902 5602 9.813080 GGTTTGCTTCGCTAATATAATTTCTAG 57.187 33.333 0.00 0.00 0.00 2.43
3904 5604 8.220755 TGGTTTGCTTCGCTAATATAATTTCT 57.779 30.769 0.00 0.00 0.00 2.52
3906 5606 9.893305 GTATGGTTTGCTTCGCTAATATAATTT 57.107 29.630 0.00 0.00 0.00 1.82
3912 5612 5.666462 TCTGTATGGTTTGCTTCGCTAATA 58.334 37.500 0.00 0.00 0.00 0.98
3915 5615 3.603158 TCTGTATGGTTTGCTTCGCTA 57.397 42.857 0.00 0.00 0.00 4.26
3959 5662 4.965532 AGTGAATGTGCTCCTCCTAGTATT 59.034 41.667 0.00 0.00 0.00 1.89
3962 5665 2.826488 AGTGAATGTGCTCCTCCTAGT 58.174 47.619 0.00 0.00 0.00 2.57
3965 5668 2.641815 AGAAAGTGAATGTGCTCCTCCT 59.358 45.455 0.00 0.00 0.00 3.69
3980 5683 8.177119 TGTAATTATGCAAGGAAACAGAAAGT 57.823 30.769 0.00 0.00 0.00 2.66
4013 5716 6.322201 GTCACCACTGGGAATCATTTGATATT 59.678 38.462 0.00 0.00 38.05 1.28
4018 5721 2.162208 CGTCACCACTGGGAATCATTTG 59.838 50.000 0.00 0.00 38.05 2.32
4039 5742 0.108851 CCAAAACATTACCAGCGGGC 60.109 55.000 1.46 0.00 37.90 6.13
4121 5824 9.129532 AGCCAAAATTTTGAATTCAATTGGTAA 57.870 25.926 32.21 21.28 41.13 2.85
4136 5839 9.356433 GCATTGCAATATTTAAGCCAAAATTTT 57.644 25.926 12.53 0.00 31.63 1.82
4139 5842 7.868906 AGCATTGCAATATTTAAGCCAAAAT 57.131 28.000 12.53 0.18 33.69 1.82
4178 5882 1.812235 CTGGCTAAGTGATGTGTGCA 58.188 50.000 0.00 0.00 0.00 4.57
4179 5883 0.449388 GCTGGCTAAGTGATGTGTGC 59.551 55.000 0.00 0.00 0.00 4.57
4186 5892 1.901833 TCATGAGTGCTGGCTAAGTGA 59.098 47.619 0.00 0.00 0.00 3.41
4189 5895 2.975732 TCTCATGAGTGCTGGCTAAG 57.024 50.000 21.92 0.00 0.00 2.18
4190 5896 3.538591 CATTCTCATGAGTGCTGGCTAA 58.461 45.455 21.92 7.11 31.07 3.09
4193 5899 1.022735 CCATTCTCATGAGTGCTGGC 58.977 55.000 21.92 0.00 31.07 4.85
4202 5908 3.452755 AACATGCATGCCATTCTCATG 57.547 42.857 26.53 12.50 43.02 3.07
4219 5925 7.138736 GCTCTAGCACATGTAAAAGAAAAACA 58.861 34.615 0.00 0.00 41.59 2.83
4220 5926 7.554243 GCTCTAGCACATGTAAAAGAAAAAC 57.446 36.000 0.00 0.00 41.59 2.43
4237 5952 7.326454 TGGATATGATTTACAGATGCTCTAGC 58.674 38.462 0.00 0.00 38.89 3.42
4263 5978 5.480422 TCATTACTTCAGCCAGTCTTAGACA 59.520 40.000 15.23 0.00 34.60 3.41
4264 5979 5.967088 TCATTACTTCAGCCAGTCTTAGAC 58.033 41.667 3.85 3.85 0.00 2.59
4266 5981 7.856145 AATTCATTACTTCAGCCAGTCTTAG 57.144 36.000 0.00 0.00 0.00 2.18
4268 5983 8.049117 TCATAATTCATTACTTCAGCCAGTCTT 58.951 33.333 0.00 0.00 0.00 3.01
4318 6033 4.287067 AGAGAGGCCAGAAATGAAACTACA 59.713 41.667 5.01 0.00 0.00 2.74
4344 6059 5.416947 ACTTACGGTCTATAAGCAAACAGG 58.583 41.667 0.00 0.00 33.66 4.00
4345 6060 8.540492 CATTACTTACGGTCTATAAGCAAACAG 58.460 37.037 0.00 0.00 33.66 3.16
4346 6061 8.036575 ACATTACTTACGGTCTATAAGCAAACA 58.963 33.333 0.00 0.00 33.66 2.83
4347 6062 8.325997 CACATTACTTACGGTCTATAAGCAAAC 58.674 37.037 0.00 0.00 33.66 2.93
4348 6063 8.252417 TCACATTACTTACGGTCTATAAGCAAA 58.748 33.333 0.00 0.00 33.66 3.68
4350 6065 7.337480 TCACATTACTTACGGTCTATAAGCA 57.663 36.000 0.00 0.00 33.66 3.91
4351 6066 9.903682 TTATCACATTACTTACGGTCTATAAGC 57.096 33.333 0.00 0.00 33.66 3.09
4359 6074 9.798994 CTTCTAGTTTATCACATTACTTACGGT 57.201 33.333 0.00 0.00 0.00 4.83
4402 6120 8.635877 AAGAAATGACTATTACTTGCTCGTAG 57.364 34.615 0.00 0.00 0.00 3.51
4406 6124 7.766278 TGAGGAAGAAATGACTATTACTTGCTC 59.234 37.037 15.44 15.44 45.69 4.26
4412 6130 8.660373 CAGTTGTGAGGAAGAAATGACTATTAC 58.340 37.037 0.00 0.00 29.14 1.89
4416 6135 6.174720 ACAGTTGTGAGGAAGAAATGACTA 57.825 37.500 0.00 0.00 32.00 2.59
4421 6140 5.471456 CAGCTTACAGTTGTGAGGAAGAAAT 59.529 40.000 6.24 0.00 32.90 2.17
4427 6146 3.834813 AGATCAGCTTACAGTTGTGAGGA 59.165 43.478 6.24 0.00 32.90 3.71
4428 6147 4.199432 AGATCAGCTTACAGTTGTGAGG 57.801 45.455 6.24 0.00 32.90 3.86
4429 6148 4.993584 ACAAGATCAGCTTACAGTTGTGAG 59.006 41.667 0.00 0.10 34.31 3.51
4442 6161 6.366332 CCACCGTAGATAATTACAAGATCAGC 59.634 42.308 0.00 0.00 0.00 4.26
4462 6187 8.250538 ACAAATAAAAATAAGAAATGCCACCG 57.749 30.769 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.