Multiple sequence alignment - TraesCS7B01G356600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G356600 chr7B 100.000 5165 0 0 998 6162 616911545 616916709 0.000000e+00 9539.0
1 TraesCS7B01G356600 chr7B 98.078 2549 46 1 2746 5294 709129452 709131997 0.000000e+00 4433.0
2 TraesCS7B01G356600 chr7B 97.411 2549 63 1 2746 5294 613374866 613372321 0.000000e+00 4338.0
3 TraesCS7B01G356600 chr7B 97.365 873 22 1 5290 6162 387060703 387059832 0.000000e+00 1483.0
4 TraesCS7B01G356600 chr7B 97.251 873 24 0 5290 6162 664436406 664437278 0.000000e+00 1480.0
5 TraesCS7B01G356600 chr7B 100.000 626 0 0 1 626 616910548 616911173 0.000000e+00 1157.0
6 TraesCS7B01G356600 chr3B 96.240 4308 132 7 998 5294 280583894 280588182 0.000000e+00 7031.0
7 TraesCS7B01G356600 chr3B 98.129 2085 37 2 3210 5294 16179556 16177474 0.000000e+00 3633.0
8 TraesCS7B01G356600 chr3B 94.931 1302 60 4 2876 4174 734369063 734370361 0.000000e+00 2034.0
9 TraesCS7B01G356600 chr3B 94.811 1137 46 2 4170 5294 240759525 240758390 0.000000e+00 1760.0
10 TraesCS7B01G356600 chr3B 95.390 629 25 3 1 626 280583025 280583652 0.000000e+00 998.0
11 TraesCS7B01G356600 chr3B 90.387 697 58 4 2189 2876 210822519 210823215 0.000000e+00 907.0
12 TraesCS7B01G356600 chr3B 97.319 373 10 0 2746 3118 16179941 16179569 8.710000e-178 634.0
13 TraesCS7B01G356600 chr4B 96.486 3415 106 6 1001 4404 548863916 548860505 0.000000e+00 5629.0
14 TraesCS7B01G356600 chr4B 96.979 2549 51 4 2746 5294 565112461 565114983 0.000000e+00 4257.0
15 TraesCS7B01G356600 chr4B 96.935 522 16 0 1 522 548879076 548878555 0.000000e+00 876.0
16 TraesCS7B01G356600 chr4B 85.197 608 72 8 2 599 153305475 153306074 5.280000e-170 608.0
17 TraesCS7B01G356600 chr4B 90.323 62 6 0 1696 1757 164308807 164308868 1.420000e-11 82.4
18 TraesCS7B01G356600 chr2B 98.078 2549 45 3 2746 5294 29005340 29002796 0.000000e+00 4433.0
19 TraesCS7B01G356600 chr2B 97.365 873 23 0 5290 6162 103303154 103304026 0.000000e+00 1485.0
20 TraesCS7B01G356600 chr2B 92.638 652 38 4 2229 2870 733356279 733355628 0.000000e+00 929.0
21 TraesCS7B01G356600 chr2B 89.127 653 47 4 1040 1670 653745943 653746593 0.000000e+00 791.0
22 TraesCS7B01G356600 chr2B 86.306 555 52 10 2 546 750565686 750565146 3.200000e-162 582.0
23 TraesCS7B01G356600 chr6B 97.220 2086 47 3 3210 5294 387718957 387716882 0.000000e+00 3520.0
24 TraesCS7B01G356600 chr6B 94.809 1522 60 10 1823 3332 464408889 464410403 0.000000e+00 2355.0
25 TraesCS7B01G356600 chr6B 95.339 1137 39 3 4170 5294 464411227 464412361 0.000000e+00 1794.0
26 TraesCS7B01G356600 chr6B 97.365 873 23 0 5290 6162 65227210 65228082 0.000000e+00 1485.0
27 TraesCS7B01G356600 chr6B 97.251 873 23 1 5290 6162 675659265 675658394 0.000000e+00 1478.0
28 TraesCS7B01G356600 chr6B 91.971 822 44 8 998 1798 464408076 464408896 0.000000e+00 1133.0
29 TraesCS7B01G356600 chr6B 92.038 628 42 7 1 626 464406999 464407620 0.000000e+00 876.0
30 TraesCS7B01G356600 chr6B 86.408 515 49 6 2 507 363661814 363662316 1.510000e-150 544.0
31 TraesCS7B01G356600 chr6B 86.538 52 7 0 1315 1366 532151698 532151647 2.400000e-04 58.4
32 TraesCS7B01G356600 chr7D 94.667 1125 56 3 3050 4173 609065373 609064252 0.000000e+00 1742.0
33 TraesCS7B01G356600 chr7D 91.980 1172 52 15 4170 5301 609064212 609063043 0.000000e+00 1605.0
34 TraesCS7B01G356600 chr7D 90.413 678 41 7 1756 2430 139228932 139228276 0.000000e+00 870.0
35 TraesCS7B01G356600 chr7D 91.956 547 34 4 2334 2870 158645175 158644629 0.000000e+00 758.0
36 TraesCS7B01G356600 chr6A 93.905 1132 58 6 1756 2876 4929296 4928165 0.000000e+00 1698.0
37 TraesCS7B01G356600 chr6A 91.626 609 49 1 3 611 4937785 4937179 0.000000e+00 841.0
38 TraesCS7B01G356600 chr6A 86.275 51 7 0 1315 1365 495465136 495465086 8.630000e-04 56.5
39 TraesCS7B01G356600 chr1B 97.468 869 22 0 5294 6162 154132275 154131407 0.000000e+00 1483.0
40 TraesCS7B01G356600 chr5B 97.251 873 24 0 5290 6162 459126598 459125726 0.000000e+00 1480.0
41 TraesCS7B01G356600 chr5B 89.763 674 46 6 1756 2427 7211244 7210592 0.000000e+00 841.0
42 TraesCS7B01G356600 chr5B 92.857 56 4 0 1702 1757 7211336 7211281 1.420000e-11 82.4
43 TraesCS7B01G356600 chr5B 92.857 56 4 0 1702 1757 484772366 484772311 1.420000e-11 82.4
44 TraesCS7B01G356600 chr4A 97.251 873 24 0 5290 6162 675989823 675988951 0.000000e+00 1480.0
45 TraesCS7B01G356600 chrUn 97.136 873 25 0 5290 6162 195616371 195617243 0.000000e+00 1474.0
46 TraesCS7B01G356600 chr4D 88.632 1126 76 18 1756 2870 251093432 251092348 0.000000e+00 1323.0
47 TraesCS7B01G356600 chr4D 91.084 830 49 7 1756 2581 493213039 493213847 0.000000e+00 1099.0
48 TraesCS7B01G356600 chr4D 92.857 56 4 0 1702 1757 251093524 251093469 1.420000e-11 82.4
49 TraesCS7B01G356600 chr4D 90.323 62 6 0 1696 1757 493212941 493213002 1.420000e-11 82.4
50 TraesCS7B01G356600 chr5D 94.724 796 25 4 4170 4953 434298980 434299770 0.000000e+00 1221.0
51 TraesCS7B01G356600 chr5D 89.455 569 50 2 1 561 289559396 289559962 0.000000e+00 710.0
52 TraesCS7B01G356600 chr3D 90.712 829 51 9 1756 2581 77840388 77841193 0.000000e+00 1081.0
53 TraesCS7B01G356600 chr3D 90.323 62 6 0 1696 1757 77840290 77840351 1.420000e-11 82.4
54 TraesCS7B01G356600 chr2A 88.666 697 46 6 998 1666 690738083 690738774 0.000000e+00 819.0
55 TraesCS7B01G356600 chr2D 90.957 564 40 9 2324 2876 65812165 65812728 0.000000e+00 749.0
56 TraesCS7B01G356600 chr2D 87.794 467 31 14 1228 1670 547250415 547250879 1.970000e-144 523.0
57 TraesCS7B01G356600 chr2D 88.672 256 23 3 999 1254 547250144 547250393 2.160000e-79 307.0
58 TraesCS7B01G356600 chr3A 93.096 449 22 3 2207 2646 612613265 612612817 0.000000e+00 649.0
59 TraesCS7B01G356600 chr7A 87.867 511 52 2 1 503 627404709 627405217 5.320000e-165 592.0
60 TraesCS7B01G356600 chr5A 88.462 494 35 5 1756 2248 431482640 431482168 1.490000e-160 577.0
61 TraesCS7B01G356600 chr6D 80.000 80 12 4 1286 1365 348029479 348029554 8.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G356600 chr7B 616910548 616916709 6161 False 5348.0 9539 100.00000 1 6162 2 chr7B.!!$F3 6161
1 TraesCS7B01G356600 chr7B 709129452 709131997 2545 False 4433.0 4433 98.07800 2746 5294 1 chr7B.!!$F2 2548
2 TraesCS7B01G356600 chr7B 613372321 613374866 2545 True 4338.0 4338 97.41100 2746 5294 1 chr7B.!!$R2 2548
3 TraesCS7B01G356600 chr7B 387059832 387060703 871 True 1483.0 1483 97.36500 5290 6162 1 chr7B.!!$R1 872
4 TraesCS7B01G356600 chr7B 664436406 664437278 872 False 1480.0 1480 97.25100 5290 6162 1 chr7B.!!$F1 872
5 TraesCS7B01G356600 chr3B 280583025 280588182 5157 False 4014.5 7031 95.81500 1 5294 2 chr3B.!!$F3 5293
6 TraesCS7B01G356600 chr3B 16177474 16179941 2467 True 2133.5 3633 97.72400 2746 5294 2 chr3B.!!$R2 2548
7 TraesCS7B01G356600 chr3B 734369063 734370361 1298 False 2034.0 2034 94.93100 2876 4174 1 chr3B.!!$F2 1298
8 TraesCS7B01G356600 chr3B 240758390 240759525 1135 True 1760.0 1760 94.81100 4170 5294 1 chr3B.!!$R1 1124
9 TraesCS7B01G356600 chr3B 210822519 210823215 696 False 907.0 907 90.38700 2189 2876 1 chr3B.!!$F1 687
10 TraesCS7B01G356600 chr4B 548860505 548863916 3411 True 5629.0 5629 96.48600 1001 4404 1 chr4B.!!$R1 3403
11 TraesCS7B01G356600 chr4B 565112461 565114983 2522 False 4257.0 4257 96.97900 2746 5294 1 chr4B.!!$F3 2548
12 TraesCS7B01G356600 chr4B 548878555 548879076 521 True 876.0 876 96.93500 1 522 1 chr4B.!!$R2 521
13 TraesCS7B01G356600 chr4B 153305475 153306074 599 False 608.0 608 85.19700 2 599 1 chr4B.!!$F1 597
14 TraesCS7B01G356600 chr2B 29002796 29005340 2544 True 4433.0 4433 98.07800 2746 5294 1 chr2B.!!$R1 2548
15 TraesCS7B01G356600 chr2B 103303154 103304026 872 False 1485.0 1485 97.36500 5290 6162 1 chr2B.!!$F1 872
16 TraesCS7B01G356600 chr2B 733355628 733356279 651 True 929.0 929 92.63800 2229 2870 1 chr2B.!!$R2 641
17 TraesCS7B01G356600 chr2B 653745943 653746593 650 False 791.0 791 89.12700 1040 1670 1 chr2B.!!$F2 630
18 TraesCS7B01G356600 chr2B 750565146 750565686 540 True 582.0 582 86.30600 2 546 1 chr2B.!!$R3 544
19 TraesCS7B01G356600 chr6B 387716882 387718957 2075 True 3520.0 3520 97.22000 3210 5294 1 chr6B.!!$R1 2084
20 TraesCS7B01G356600 chr6B 464406999 464412361 5362 False 1539.5 2355 93.53925 1 5294 4 chr6B.!!$F3 5293
21 TraesCS7B01G356600 chr6B 65227210 65228082 872 False 1485.0 1485 97.36500 5290 6162 1 chr6B.!!$F1 872
22 TraesCS7B01G356600 chr6B 675658394 675659265 871 True 1478.0 1478 97.25100 5290 6162 1 chr6B.!!$R3 872
23 TraesCS7B01G356600 chr6B 363661814 363662316 502 False 544.0 544 86.40800 2 507 1 chr6B.!!$F2 505
24 TraesCS7B01G356600 chr7D 609063043 609065373 2330 True 1673.5 1742 93.32350 3050 5301 2 chr7D.!!$R3 2251
25 TraesCS7B01G356600 chr7D 139228276 139228932 656 True 870.0 870 90.41300 1756 2430 1 chr7D.!!$R1 674
26 TraesCS7B01G356600 chr7D 158644629 158645175 546 True 758.0 758 91.95600 2334 2870 1 chr7D.!!$R2 536
27 TraesCS7B01G356600 chr6A 4928165 4929296 1131 True 1698.0 1698 93.90500 1756 2876 1 chr6A.!!$R1 1120
28 TraesCS7B01G356600 chr6A 4937179 4937785 606 True 841.0 841 91.62600 3 611 1 chr6A.!!$R2 608
29 TraesCS7B01G356600 chr1B 154131407 154132275 868 True 1483.0 1483 97.46800 5294 6162 1 chr1B.!!$R1 868
30 TraesCS7B01G356600 chr5B 459125726 459126598 872 True 1480.0 1480 97.25100 5290 6162 1 chr5B.!!$R1 872
31 TraesCS7B01G356600 chr5B 7210592 7211336 744 True 461.7 841 91.31000 1702 2427 2 chr5B.!!$R3 725
32 TraesCS7B01G356600 chr4A 675988951 675989823 872 True 1480.0 1480 97.25100 5290 6162 1 chr4A.!!$R1 872
33 TraesCS7B01G356600 chrUn 195616371 195617243 872 False 1474.0 1474 97.13600 5290 6162 1 chrUn.!!$F1 872
34 TraesCS7B01G356600 chr4D 251092348 251093524 1176 True 702.7 1323 90.74450 1702 2870 2 chr4D.!!$R1 1168
35 TraesCS7B01G356600 chr4D 493212941 493213847 906 False 590.7 1099 90.70350 1696 2581 2 chr4D.!!$F1 885
36 TraesCS7B01G356600 chr5D 434298980 434299770 790 False 1221.0 1221 94.72400 4170 4953 1 chr5D.!!$F2 783
37 TraesCS7B01G356600 chr5D 289559396 289559962 566 False 710.0 710 89.45500 1 561 1 chr5D.!!$F1 560
38 TraesCS7B01G356600 chr3D 77840290 77841193 903 False 581.7 1081 90.51750 1696 2581 2 chr3D.!!$F1 885
39 TraesCS7B01G356600 chr2A 690738083 690738774 691 False 819.0 819 88.66600 998 1666 1 chr2A.!!$F1 668
40 TraesCS7B01G356600 chr2D 65812165 65812728 563 False 749.0 749 90.95700 2324 2876 1 chr2D.!!$F1 552
41 TraesCS7B01G356600 chr2D 547250144 547250879 735 False 415.0 523 88.23300 999 1670 2 chr2D.!!$F2 671
42 TraesCS7B01G356600 chr7A 627404709 627405217 508 False 592.0 592 87.86700 1 503 1 chr7A.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 608 1.522900 GATCCATCCCCTCCCTTTGA 58.477 55.000 0.0 0.00 0.00 2.69 F
1284 1462 0.984230 AAGAAGGAGGTGGCGATCAA 59.016 50.000 0.0 0.00 0.00 2.57 F
1993 2234 1.558756 CCTGCCTGAGAAAGATCCTGT 59.441 52.381 0.0 0.00 0.00 4.00 F
3328 3594 1.008815 TGAGGATCAGTGATGTCCCCT 59.991 52.381 11.2 10.59 42.56 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2394 2.659610 GCGAGAAGACAGGTGCCT 59.340 61.111 0.00 0.00 0.00 4.75 R
2827 3087 2.415168 GGAGAGAGCATAGACTCGATCG 59.585 54.545 9.36 9.36 41.77 3.69 R
3828 4097 2.744760 TCAGGATCAGAGGTTCAGAGG 58.255 52.381 0.00 0.00 0.00 3.69 R
5299 5661 2.139917 CCGTTTCACAATCGAAGGTCA 58.860 47.619 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.586344 TGGAGTCCAATTTTGCAACAAATAA 58.414 32.000 10.20 0.00 0.00 1.40
299 304 3.681897 CCAACCAATCAGAACTCTTCTCG 59.318 47.826 0.00 0.00 38.11 4.04
436 477 3.566210 CCCCCAGAACACACCCGT 61.566 66.667 0.00 0.00 0.00 5.28
439 480 2.420043 CCAGAACACACCCGTCGT 59.580 61.111 0.00 0.00 0.00 4.34
517 560 2.378522 CCCCTCCTTCCCCATCCT 59.621 66.667 0.00 0.00 0.00 3.24
565 608 1.522900 GATCCATCCCCTCCCTTTGA 58.477 55.000 0.00 0.00 0.00 2.69
591 634 1.995066 ATCACCTCCGCACCCATCA 60.995 57.895 0.00 0.00 0.00 3.07
1049 1182 1.520564 CCCGGATTGTGATTCGCGA 60.521 57.895 3.71 3.71 32.72 5.87
1284 1462 0.984230 AAGAAGGAGGTGGCGATCAA 59.016 50.000 0.00 0.00 0.00 2.57
1333 1511 1.758440 AAGCTGGTGCGTGAGGAAGA 61.758 55.000 0.00 0.00 45.42 2.87
1884 2124 3.516586 TGATGAACTTCCTCCACACCTA 58.483 45.455 0.00 0.00 0.00 3.08
1993 2234 1.558756 CCTGCCTGAGAAAGATCCTGT 59.441 52.381 0.00 0.00 0.00 4.00
2051 2292 9.575868 TGATTCAGTTTTGGGTTATGTAGTAAA 57.424 29.630 0.00 0.00 0.00 2.01
2079 2320 8.998277 ATAGTCTAGTTACAATGCCTCTTCTA 57.002 34.615 0.00 0.00 0.00 2.10
2089 2330 5.707764 ACAATGCCTCTTCTAAAGAAAGACC 59.292 40.000 0.00 0.00 37.02 3.85
2152 2394 4.401202 TCTGTTGTCAATGCTATCCGTCTA 59.599 41.667 0.00 0.00 0.00 2.59
2427 2673 6.000219 ACCTATGCATTCTAATGGTCACATC 59.000 40.000 3.54 0.00 35.94 3.06
2975 3241 4.225942 TGGAGTATCAACTTGGAGCATCTT 59.774 41.667 0.00 0.00 35.56 2.40
3012 3278 2.670905 TGCAACACATTCGATTACTCCG 59.329 45.455 0.00 0.00 0.00 4.63
3022 3288 6.433404 ACATTCGATTACTCCGGTACTGATAT 59.567 38.462 2.31 0.00 0.00 1.63
3239 3505 7.639113 TTCTTGAACTGTGTTGTATTTCCTT 57.361 32.000 0.00 0.00 0.00 3.36
3276 3542 6.430925 TGAATCTAGTTACAACAAAGCATGCT 59.569 34.615 16.30 16.30 0.00 3.79
3328 3594 1.008815 TGAGGATCAGTGATGTCCCCT 59.991 52.381 11.20 10.59 42.56 4.79
3828 4097 5.294552 AGCATAAACGCCTTCACTATTCTTC 59.705 40.000 0.00 0.00 0.00 2.87
3988 4257 4.215908 CTCTGGCTGATTAGTACCCAGTA 58.784 47.826 10.63 0.50 42.77 2.74
4083 4352 3.375299 GCATGCTCTTTTTCGGTCTGTAT 59.625 43.478 11.37 0.00 0.00 2.29
4089 4358 7.778083 TGCTCTTTTTCGGTCTGTATAGAATA 58.222 34.615 0.00 0.00 34.01 1.75
4155 4424 7.761409 TCTTTATGTGATTTACTCATGTTGGC 58.239 34.615 0.00 0.00 35.97 4.52
4755 5088 5.626955 GCACTCTAAATTTTGCTGTCTTGTC 59.373 40.000 0.00 0.00 32.00 3.18
5073 5435 5.637006 TTTATGGCCTGTGATGTAAACAC 57.363 39.130 3.32 0.00 40.42 3.32
5299 5661 3.895232 ATGTGCATAGAAGTTCGAGGT 57.105 42.857 0.00 0.00 0.00 3.85
5451 5813 2.968574 GCTATGTCTTGGAGAGGATGGA 59.031 50.000 0.00 0.00 0.00 3.41
5833 6195 7.472945 CGGAAGATGGTAGATAAAACCCACTAT 60.473 40.741 0.00 0.00 36.06 2.12
5998 6360 3.246167 ACTTCTCTGGAGATACCCTGGTT 60.246 47.826 0.88 0.00 37.29 3.67
6034 6396 0.096976 CGACATCCGCGCATCTTTTT 59.903 50.000 8.75 0.00 0.00 1.94
6107 6469 2.890612 TCGGCAGAAACTCCCGATA 58.109 52.632 0.00 0.00 45.30 2.92
6139 6501 4.502777 GCCTCATCTAATGTCTCTGCATGA 60.503 45.833 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.597386 GGTTCTTTTGTGAAGAAGCTATCAAT 58.403 34.615 18.29 0.00 45.90 2.57
309 314 2.286294 CGGTTCAGATCAGCTACAATGC 59.714 50.000 0.00 0.00 0.00 3.56
436 477 0.745128 GGAAGAGAGAGAGGCGACGA 60.745 60.000 0.00 0.00 0.00 4.20
439 480 1.076632 GGGGAAGAGAGAGAGGCGA 60.077 63.158 0.00 0.00 0.00 5.54
565 608 0.900182 TGCGGAGGTGATGTGAGAGT 60.900 55.000 0.00 0.00 0.00 3.24
1284 1462 0.851469 TCGATCCCCCTAGTAGCTGT 59.149 55.000 0.00 0.00 0.00 4.40
1333 1511 0.759436 AGACCACTTCCACTCGGTGT 60.759 55.000 0.00 0.00 0.00 4.16
1993 2234 3.134623 CCTTACCATCCATGCACTGTAGA 59.865 47.826 0.00 0.00 0.00 2.59
2051 2292 7.425224 AGAGGCATTGTAACTAGACTATTGT 57.575 36.000 0.00 0.00 0.00 2.71
2079 2320 4.080863 ACGGATATCTGCAGGTCTTTCTTT 60.081 41.667 15.13 0.00 0.00 2.52
2089 2330 3.170791 ACACAAGACGGATATCTGCAG 57.829 47.619 7.63 7.63 0.00 4.41
2152 2394 2.659610 GCGAGAAGACAGGTGCCT 59.340 61.111 0.00 0.00 0.00 4.75
2827 3087 2.415168 GGAGAGAGCATAGACTCGATCG 59.585 54.545 9.36 9.36 41.77 3.69
2975 3241 4.690748 GTGTTGCAAGATGCTACTCTAACA 59.309 41.667 15.68 8.47 46.51 2.41
3012 3278 9.197694 CAAGATGCTACTGTAAATATCAGTACC 57.802 37.037 2.29 0.00 43.17 3.34
3022 3288 6.208402 TCCATTTTGCAAGATGCTACTGTAAA 59.792 34.615 21.44 0.00 45.31 2.01
3276 3542 6.073314 ACTACTCCACCAAAGACAAGTACTA 58.927 40.000 0.00 0.00 0.00 1.82
3324 3590 8.356000 TCAAAACTACACCAAATTAATAGGGG 57.644 34.615 7.40 7.40 0.00 4.79
3828 4097 2.744760 TCAGGATCAGAGGTTCAGAGG 58.255 52.381 0.00 0.00 0.00 3.69
4083 4352 8.759481 TGCCAAAACACCATATCAATATTCTA 57.241 30.769 0.00 0.00 0.00 2.10
4089 4358 3.770933 AGCTGCCAAAACACCATATCAAT 59.229 39.130 0.00 0.00 0.00 2.57
4155 4424 6.425114 ACAGAGCAATCACTTAACAAGTAGTG 59.575 38.462 0.00 0.00 40.46 2.74
4755 5088 5.178061 TGCTTAGGACATATGGCATTATCG 58.822 41.667 11.56 0.00 0.00 2.92
5280 5642 2.560981 TCACCTCGAACTTCTATGCACA 59.439 45.455 0.00 0.00 0.00 4.57
5299 5661 2.139917 CCGTTTCACAATCGAAGGTCA 58.860 47.619 0.00 0.00 0.00 4.02
5833 6195 2.553086 GTTAATTCGGTGCCATCGGTA 58.447 47.619 0.00 0.00 0.00 4.02
6091 6453 3.134458 CAATCTATCGGGAGTTTCTGCC 58.866 50.000 0.00 0.00 38.66 4.85
6092 6454 3.557595 CACAATCTATCGGGAGTTTCTGC 59.442 47.826 0.00 0.00 0.00 4.26
6107 6469 5.104610 AGACATTAGATGAGGCACACAATCT 60.105 40.000 0.00 0.00 29.57 2.40
6139 6501 1.895798 TGTTCAGAACTGAGAGGCGAT 59.104 47.619 14.51 0.00 41.13 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.