Multiple sequence alignment - TraesCS7B01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G355800 chr7B 100.000 4501 0 0 1 4501 615797766 615793266 0.000000e+00 8312.0
1 TraesCS7B01G355800 chr7B 85.868 743 67 19 2182 2922 615787276 615786570 0.000000e+00 756.0
2 TraesCS7B01G355800 chr7B 87.477 551 52 7 3936 4473 615762615 615762069 1.780000e-173 619.0
3 TraesCS7B01G355800 chr7B 79.726 656 57 42 3230 3850 615734846 615734232 5.420000e-109 405.0
4 TraesCS7B01G355800 chr7B 90.635 299 28 0 2918 3216 615776728 615776430 9.070000e-107 398.0
5 TraesCS7B01G355800 chr7B 84.248 419 26 23 3432 3850 615762992 615762614 5.500000e-99 372.0
6 TraesCS7B01G355800 chr7B 90.062 161 8 4 2831 2983 615735118 615734958 7.630000e-48 202.0
7 TraesCS7B01G355800 chr7B 78.931 318 42 13 4187 4501 615733450 615733155 4.590000e-45 193.0
8 TraesCS7B01G355800 chr7B 82.128 235 22 10 3934 4159 615733773 615733550 2.770000e-42 183.0
9 TraesCS7B01G355800 chr7B 78.947 342 19 12 2430 2769 615735416 615735126 2.770000e-42 183.0
10 TraesCS7B01G355800 chr7B 94.643 112 6 0 3043 3154 615734961 615734850 1.660000e-39 174.0
11 TraesCS7B01G355800 chr7B 91.339 127 8 3 3212 3337 615764887 615764763 2.150000e-38 171.0
12 TraesCS7B01G355800 chr7B 97.143 35 1 0 3898 3932 620754961 620754927 4.860000e-05 60.2
13 TraesCS7B01G355800 chr7D 92.101 3532 155 45 385 3850 565429109 565425636 0.000000e+00 4863.0
14 TraesCS7B01G355800 chr7D 82.990 1164 106 26 2180 3340 565394422 565393348 0.000000e+00 968.0
15 TraesCS7B01G355800 chr7D 94.292 473 23 3 4031 4501 565400201 565399731 0.000000e+00 721.0
16 TraesCS7B01G355800 chr7D 87.678 422 22 15 3432 3850 565391101 565390707 8.820000e-127 464.0
17 TraesCS7B01G355800 chr7A 89.984 3085 185 57 425 3453 651712968 651709952 0.000000e+00 3871.0
18 TraesCS7B01G355800 chr7A 91.522 578 35 6 3936 4501 651709213 651708638 0.000000e+00 784.0
19 TraesCS7B01G355800 chr7A 84.399 391 45 8 1 382 187435689 187436072 1.980000e-98 370.0
20 TraesCS7B01G355800 chr7A 85.623 313 18 8 3539 3845 651709508 651709217 2.030000e-78 303.0
21 TraesCS7B01G355800 chr7A 85.433 254 33 4 6 256 23526491 23526743 1.240000e-65 261.0
22 TraesCS7B01G355800 chr7A 92.500 160 12 0 1319 1478 275869648 275869807 3.500000e-56 230.0
23 TraesCS7B01G355800 chr7A 76.574 397 60 24 1225 1609 275869903 275869528 2.140000e-43 187.0
24 TraesCS7B01G355800 chr1A 82.171 387 51 7 1 381 566659018 566658644 2.610000e-82 316.0
25 TraesCS7B01G355800 chr1B 81.890 381 54 7 11 382 389551624 389551250 1.570000e-79 307.0
26 TraesCS7B01G355800 chr4D 85.870 276 37 2 2 275 66566901 66566626 4.400000e-75 292.0
27 TraesCS7B01G355800 chr6D 86.166 253 33 2 1 251 418532711 418532459 5.740000e-69 272.0
28 TraesCS7B01G355800 chr2D 81.515 330 54 7 11 335 651504184 651503857 9.600000e-67 265.0
29 TraesCS7B01G355800 chr5D 84.906 265 32 6 7 269 387959684 387959942 1.240000e-65 261.0
30 TraesCS7B01G355800 chr3D 84.646 254 36 2 7 257 516967760 516967507 2.690000e-62 250.0
31 TraesCS7B01G355800 chr2A 92.857 154 11 0 1325 1478 103517804 103517651 1.630000e-54 224.0
32 TraesCS7B01G355800 chr2A 89.147 129 14 0 1481 1609 103517802 103517930 1.300000e-35 161.0
33 TraesCS7B01G355800 chr2B 89.286 84 5 3 3851 3932 425730751 425730670 7.970000e-18 102.0
34 TraesCS7B01G355800 chr4B 87.952 83 6 3 3851 3932 581192839 581192760 1.330000e-15 95.3
35 TraesCS7B01G355800 chr4B 83.133 83 10 3 3851 3932 387404061 387404140 6.250000e-09 73.1
36 TraesCS7B01G355800 chr6B 85.882 85 7 4 3851 3932 6344820 6344738 8.020000e-13 86.1
37 TraesCS7B01G355800 chr6B 85.714 84 6 5 3851 3932 253447369 253447290 2.890000e-12 84.2
38 TraesCS7B01G355800 chr6B 83.133 83 10 3 3851 3932 676201183 676201104 6.250000e-09 73.1
39 TraesCS7B01G355800 chr6B 82.353 85 11 3 3849 3932 673327341 673327260 2.250000e-08 71.3
40 TraesCS7B01G355800 chr5B 80.723 83 12 3 3851 3932 429022585 429022506 1.350000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G355800 chr7B 615793266 615797766 4500 True 8312.000000 8312 100.000000 1 4501 1 chr7B.!!$R3 4500
1 TraesCS7B01G355800 chr7B 615786570 615787276 706 True 756.000000 756 85.868000 2182 2922 1 chr7B.!!$R2 740
2 TraesCS7B01G355800 chr7B 615762069 615764887 2818 True 387.333333 619 87.688000 3212 4473 3 chr7B.!!$R6 1261
3 TraesCS7B01G355800 chr7B 615733155 615735416 2261 True 223.333333 405 84.072833 2430 4501 6 chr7B.!!$R5 2071
4 TraesCS7B01G355800 chr7D 565425636 565429109 3473 True 4863.000000 4863 92.101000 385 3850 1 chr7D.!!$R2 3465
5 TraesCS7B01G355800 chr7D 565390707 565394422 3715 True 716.000000 968 85.334000 2180 3850 2 chr7D.!!$R3 1670
6 TraesCS7B01G355800 chr7A 651708638 651712968 4330 True 1652.666667 3871 89.043000 425 4501 3 chr7A.!!$R2 4076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.033504 TCGACCTTCTCAGCACCAAC 59.966 55.0 0.00 0.00 0.00 3.77 F
216 217 0.037605 GAACAAGATGTCGGGACCGT 60.038 55.0 10.90 0.00 40.74 4.83 F
349 350 0.041839 GCACGAGCACTGAAGTTGTG 60.042 55.0 0.00 0.00 41.58 3.33 F
529 530 0.375106 GAAACTGCTAGCCGTGCATC 59.625 55.0 12.88 8.14 39.86 3.91 F
1233 1299 0.610687 CTTTTCCTGTCCCTCGCTCT 59.389 55.0 0.00 0.00 0.00 4.09 F
2474 2546 0.388659 ATCTCTGCTCAGCGGACATC 59.611 55.0 3.22 0.00 39.19 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 2188 1.127225 GTCGACTTGCACGCGTAAC 59.873 57.895 13.44 8.16 0.00 2.50 R
2124 2194 1.154413 GGCATTGTCGACTTGCACG 60.154 57.895 31.07 12.63 38.12 5.34 R
2265 2335 0.517316 GATCAGCGTTGTTCGGCTTT 59.483 50.000 0.00 0.00 40.26 3.51 R
2473 2545 1.493772 AGAAAACGTTGCACGATCGA 58.506 45.000 24.34 0.00 46.05 3.59 R
2862 2953 1.666872 CCGGTCCGACAAACAGACC 60.667 63.158 14.39 0.00 45.49 3.85 R
4399 9268 0.827507 GGTGGCTTGTGAATGGTGGT 60.828 55.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.247380 GCGGCCATGAGGGAGGAG 62.247 72.222 2.24 0.00 40.01 3.69
20 21 2.444706 CGGCCATGAGGGAGGAGA 60.445 66.667 2.24 0.00 40.01 3.71
21 22 2.066393 CGGCCATGAGGGAGGAGAA 61.066 63.158 2.24 0.00 40.01 2.87
22 23 1.626356 CGGCCATGAGGGAGGAGAAA 61.626 60.000 2.24 0.00 40.01 2.52
23 24 0.849417 GGCCATGAGGGAGGAGAAAT 59.151 55.000 0.00 0.00 40.01 2.17
24 25 1.202867 GGCCATGAGGGAGGAGAAATC 60.203 57.143 0.00 0.00 40.01 2.17
25 26 1.202867 GCCATGAGGGAGGAGAAATCC 60.203 57.143 0.00 0.00 40.01 3.01
26 27 1.071385 CCATGAGGGAGGAGAAATCCG 59.929 57.143 0.00 0.00 40.01 4.18
27 28 2.042464 CATGAGGGAGGAGAAATCCGA 58.958 52.381 0.00 0.00 37.75 4.55
28 29 2.478872 TGAGGGAGGAGAAATCCGAT 57.521 50.000 0.00 0.00 37.75 4.18
29 30 2.042464 TGAGGGAGGAGAAATCCGATG 58.958 52.381 0.00 0.00 37.75 3.84
30 31 0.761802 AGGGAGGAGAAATCCGATGC 59.238 55.000 0.00 0.00 37.75 3.91
31 32 0.601311 GGGAGGAGAAATCCGATGCG 60.601 60.000 0.00 0.00 37.75 4.73
32 33 0.389391 GGAGGAGAAATCCGATGCGA 59.611 55.000 0.00 0.00 34.28 5.10
33 34 1.604185 GGAGGAGAAATCCGATGCGAG 60.604 57.143 0.00 0.00 34.28 5.03
34 35 0.390860 AGGAGAAATCCGATGCGAGG 59.609 55.000 0.00 0.00 34.28 4.63
35 36 0.105039 GGAGAAATCCGATGCGAGGT 59.895 55.000 0.00 0.00 0.00 3.85
36 37 1.340248 GGAGAAATCCGATGCGAGGTA 59.660 52.381 0.00 0.00 0.00 3.08
37 38 2.608261 GGAGAAATCCGATGCGAGGTAG 60.608 54.545 0.00 0.00 0.00 3.18
38 39 2.032620 AGAAATCCGATGCGAGGTAGT 58.967 47.619 0.00 0.00 0.00 2.73
39 40 2.034812 AGAAATCCGATGCGAGGTAGTC 59.965 50.000 0.00 0.00 0.00 2.59
40 41 1.399714 AATCCGATGCGAGGTAGTCA 58.600 50.000 0.00 0.00 0.00 3.41
41 42 0.955178 ATCCGATGCGAGGTAGTCAG 59.045 55.000 0.00 0.00 0.00 3.51
42 43 0.393944 TCCGATGCGAGGTAGTCAGT 60.394 55.000 0.00 0.00 0.00 3.41
43 44 0.248661 CCGATGCGAGGTAGTCAGTG 60.249 60.000 0.00 0.00 0.00 3.66
44 45 0.452184 CGATGCGAGGTAGTCAGTGT 59.548 55.000 0.00 0.00 0.00 3.55
45 46 1.135373 CGATGCGAGGTAGTCAGTGTT 60.135 52.381 0.00 0.00 0.00 3.32
46 47 2.263077 GATGCGAGGTAGTCAGTGTTG 58.737 52.381 0.00 0.00 0.00 3.33
47 48 1.324383 TGCGAGGTAGTCAGTGTTGA 58.676 50.000 0.00 0.00 0.00 3.18
48 49 1.893137 TGCGAGGTAGTCAGTGTTGAT 59.107 47.619 0.00 0.00 35.39 2.57
49 50 2.263077 GCGAGGTAGTCAGTGTTGATG 58.737 52.381 0.00 0.00 35.39 3.07
50 51 2.094700 GCGAGGTAGTCAGTGTTGATGA 60.095 50.000 0.00 0.00 35.39 2.92
51 52 3.502920 CGAGGTAGTCAGTGTTGATGAC 58.497 50.000 0.00 0.00 46.01 3.06
56 57 2.863658 GTCAGTGTTGATGACGAAGC 57.136 50.000 0.00 0.00 37.88 3.86
57 58 2.135139 GTCAGTGTTGATGACGAAGCA 58.865 47.619 0.00 0.00 37.88 3.91
58 59 2.156504 GTCAGTGTTGATGACGAAGCAG 59.843 50.000 0.00 0.00 37.88 4.24
59 60 1.462283 CAGTGTTGATGACGAAGCAGG 59.538 52.381 0.00 0.00 0.00 4.85
60 61 1.344438 AGTGTTGATGACGAAGCAGGA 59.656 47.619 0.00 0.00 0.00 3.86
61 62 1.461127 GTGTTGATGACGAAGCAGGAC 59.539 52.381 0.00 0.00 0.00 3.85
62 63 1.079503 GTTGATGACGAAGCAGGACC 58.920 55.000 0.00 0.00 0.00 4.46
63 64 0.036388 TTGATGACGAAGCAGGACCC 60.036 55.000 0.00 0.00 0.00 4.46
64 65 1.153349 GATGACGAAGCAGGACCCC 60.153 63.158 0.00 0.00 0.00 4.95
65 66 1.899437 GATGACGAAGCAGGACCCCA 61.899 60.000 0.00 0.00 0.00 4.96
66 67 1.488705 ATGACGAAGCAGGACCCCAA 61.489 55.000 0.00 0.00 0.00 4.12
67 68 1.072505 GACGAAGCAGGACCCCAAA 59.927 57.895 0.00 0.00 0.00 3.28
68 69 1.228154 ACGAAGCAGGACCCCAAAC 60.228 57.895 0.00 0.00 0.00 2.93
69 70 1.073199 CGAAGCAGGACCCCAAACT 59.927 57.895 0.00 0.00 0.00 2.66
70 71 0.955919 CGAAGCAGGACCCCAAACTC 60.956 60.000 0.00 0.00 0.00 3.01
71 72 0.955919 GAAGCAGGACCCCAAACTCG 60.956 60.000 0.00 0.00 0.00 4.18
72 73 1.415672 AAGCAGGACCCCAAACTCGA 61.416 55.000 0.00 0.00 0.00 4.04
73 74 1.671379 GCAGGACCCCAAACTCGAC 60.671 63.158 0.00 0.00 0.00 4.20
74 75 1.003718 CAGGACCCCAAACTCGACC 60.004 63.158 0.00 0.00 0.00 4.79
75 76 1.152096 AGGACCCCAAACTCGACCT 60.152 57.895 0.00 0.00 0.00 3.85
76 77 0.767060 AGGACCCCAAACTCGACCTT 60.767 55.000 0.00 0.00 0.00 3.50
77 78 0.321387 GGACCCCAAACTCGACCTTC 60.321 60.000 0.00 0.00 0.00 3.46
78 79 0.685660 GACCCCAAACTCGACCTTCT 59.314 55.000 0.00 0.00 0.00 2.85
79 80 0.685660 ACCCCAAACTCGACCTTCTC 59.314 55.000 0.00 0.00 0.00 2.87
80 81 0.685097 CCCCAAACTCGACCTTCTCA 59.315 55.000 0.00 0.00 0.00 3.27
81 82 1.338200 CCCCAAACTCGACCTTCTCAG 60.338 57.143 0.00 0.00 0.00 3.35
82 83 1.433534 CCAAACTCGACCTTCTCAGC 58.566 55.000 0.00 0.00 0.00 4.26
83 84 1.270305 CCAAACTCGACCTTCTCAGCA 60.270 52.381 0.00 0.00 0.00 4.41
84 85 1.795286 CAAACTCGACCTTCTCAGCAC 59.205 52.381 0.00 0.00 0.00 4.40
85 86 0.318762 AACTCGACCTTCTCAGCACC 59.681 55.000 0.00 0.00 0.00 5.01
86 87 0.827925 ACTCGACCTTCTCAGCACCA 60.828 55.000 0.00 0.00 0.00 4.17
87 88 0.318441 CTCGACCTTCTCAGCACCAA 59.682 55.000 0.00 0.00 0.00 3.67
88 89 0.033504 TCGACCTTCTCAGCACCAAC 59.966 55.000 0.00 0.00 0.00 3.77
89 90 1.284982 CGACCTTCTCAGCACCAACG 61.285 60.000 0.00 0.00 0.00 4.10
90 91 0.249911 GACCTTCTCAGCACCAACGT 60.250 55.000 0.00 0.00 0.00 3.99
91 92 0.249911 ACCTTCTCAGCACCAACGTC 60.250 55.000 0.00 0.00 0.00 4.34
92 93 1.284982 CCTTCTCAGCACCAACGTCG 61.285 60.000 0.00 0.00 0.00 5.12
93 94 1.891060 CTTCTCAGCACCAACGTCGC 61.891 60.000 0.00 0.00 0.00 5.19
94 95 2.356313 CTCAGCACCAACGTCGCT 60.356 61.111 0.00 0.00 36.10 4.93
96 97 4.374702 CAGCACCAACGTCGCTGC 62.375 66.667 13.86 9.10 45.85 5.25
99 100 3.334751 CACCAACGTCGCTGCGAA 61.335 61.111 27.68 8.25 37.72 4.70
100 101 3.036084 ACCAACGTCGCTGCGAAG 61.036 61.111 30.70 30.70 40.77 3.79
101 102 2.733218 CCAACGTCGCTGCGAAGA 60.733 61.111 36.80 11.39 37.53 2.87
102 103 2.307309 CCAACGTCGCTGCGAAGAA 61.307 57.895 36.80 11.00 37.53 2.52
103 104 1.128611 CAACGTCGCTGCGAAGAAG 59.871 57.895 36.80 25.45 37.53 2.85
104 105 1.007734 AACGTCGCTGCGAAGAAGA 60.008 52.632 36.80 9.84 37.53 2.87
105 106 1.004277 AACGTCGCTGCGAAGAAGAG 61.004 55.000 36.80 21.02 37.53 2.85
106 107 2.155194 CGTCGCTGCGAAGAAGAGG 61.155 63.158 29.27 8.19 37.53 3.69
107 108 1.213013 GTCGCTGCGAAGAAGAGGA 59.787 57.895 27.68 0.00 37.72 3.71
108 109 0.388649 GTCGCTGCGAAGAAGAGGAA 60.389 55.000 27.68 0.00 37.72 3.36
109 110 0.317160 TCGCTGCGAAGAAGAGGAAA 59.683 50.000 23.88 0.00 31.06 3.13
110 111 0.718343 CGCTGCGAAGAAGAGGAAAG 59.282 55.000 18.66 0.00 0.00 2.62
111 112 1.082690 GCTGCGAAGAAGAGGAAAGG 58.917 55.000 0.00 0.00 0.00 3.11
112 113 1.338200 GCTGCGAAGAAGAGGAAAGGA 60.338 52.381 0.00 0.00 0.00 3.36
113 114 2.342179 CTGCGAAGAAGAGGAAAGGAC 58.658 52.381 0.00 0.00 0.00 3.85
114 115 1.002087 TGCGAAGAAGAGGAAAGGACC 59.998 52.381 0.00 0.00 0.00 4.46
115 116 1.276705 GCGAAGAAGAGGAAAGGACCT 59.723 52.381 0.00 0.00 43.64 3.85
116 117 2.933056 GCGAAGAAGAGGAAAGGACCTG 60.933 54.545 0.00 0.00 40.73 4.00
117 118 2.300437 CGAAGAAGAGGAAAGGACCTGT 59.700 50.000 0.00 0.00 40.73 4.00
118 119 3.615351 CGAAGAAGAGGAAAGGACCTGTC 60.615 52.174 2.61 2.61 40.73 3.51
119 120 1.896465 AGAAGAGGAAAGGACCTGTCG 59.104 52.381 5.55 0.00 40.73 4.35
120 121 1.619332 GAAGAGGAAAGGACCTGTCGT 59.381 52.381 6.58 6.58 40.73 4.34
121 122 1.718280 AGAGGAAAGGACCTGTCGTT 58.282 50.000 8.30 0.00 40.73 3.85
122 123 1.619332 AGAGGAAAGGACCTGTCGTTC 59.381 52.381 8.30 7.39 40.73 3.95
123 124 1.619332 GAGGAAAGGACCTGTCGTTCT 59.381 52.381 8.30 0.00 40.73 3.01
124 125 2.037381 GAGGAAAGGACCTGTCGTTCTT 59.963 50.000 8.30 0.00 42.62 2.52
125 126 2.143925 GGAAAGGACCTGTCGTTCTTG 58.856 52.381 5.55 0.00 39.61 3.02
126 127 2.224209 GGAAAGGACCTGTCGTTCTTGA 60.224 50.000 5.55 0.00 39.61 3.02
127 128 2.528041 AAGGACCTGTCGTTCTTGAC 57.472 50.000 0.00 0.00 39.01 3.18
137 138 2.828933 GTTCTTGACGAGGGCAGAC 58.171 57.895 0.00 0.00 0.00 3.51
138 139 0.033504 GTTCTTGACGAGGGCAGACA 59.966 55.000 0.00 0.00 0.00 3.41
139 140 0.033504 TTCTTGACGAGGGCAGACAC 59.966 55.000 0.00 0.00 0.00 3.67
140 141 1.734477 CTTGACGAGGGCAGACACG 60.734 63.158 0.00 0.00 0.00 4.49
141 142 2.421877 CTTGACGAGGGCAGACACGT 62.422 60.000 0.00 0.00 41.57 4.49
142 143 2.126424 GACGAGGGCAGACACGTC 60.126 66.667 9.00 9.00 45.51 4.34
144 145 3.733960 CGAGGGCAGACACGTCGA 61.734 66.667 0.00 0.00 45.79 4.20
145 146 2.126424 GAGGGCAGACACGTCGAC 60.126 66.667 5.18 5.18 34.09 4.20
146 147 3.948086 GAGGGCAGACACGTCGACG 62.948 68.421 34.58 34.58 46.33 5.12
147 148 4.034258 GGGCAGACACGTCGACGA 62.034 66.667 41.52 0.00 43.02 4.20
148 149 2.178521 GGCAGACACGTCGACGAT 59.821 61.111 41.52 28.77 43.02 3.73
149 150 2.152699 GGCAGACACGTCGACGATG 61.153 63.158 41.52 33.13 43.02 3.84
150 151 2.152699 GCAGACACGTCGACGATGG 61.153 63.158 41.52 29.78 43.02 3.51
151 152 1.500396 CAGACACGTCGACGATGGA 59.500 57.895 41.52 0.00 43.02 3.41
152 153 0.793478 CAGACACGTCGACGATGGAC 60.793 60.000 41.52 27.85 43.02 4.02
157 158 2.483745 GTCGACGATGGACGAGCA 59.516 61.111 0.00 0.00 45.77 4.26
158 159 1.583967 GTCGACGATGGACGAGCAG 60.584 63.158 0.00 0.00 45.77 4.24
159 160 2.278206 CGACGATGGACGAGCAGG 60.278 66.667 0.00 0.00 45.77 4.85
160 161 2.885861 GACGATGGACGAGCAGGT 59.114 61.111 0.00 0.00 45.77 4.00
161 162 1.517257 GACGATGGACGAGCAGGTG 60.517 63.158 0.00 0.00 45.77 4.00
162 163 1.934220 GACGATGGACGAGCAGGTGA 61.934 60.000 0.00 0.00 45.77 4.02
163 164 1.215382 CGATGGACGAGCAGGTGAA 59.785 57.895 0.00 0.00 45.77 3.18
164 165 0.803768 CGATGGACGAGCAGGTGAAG 60.804 60.000 0.00 0.00 45.77 3.02
165 166 0.460987 GATGGACGAGCAGGTGAAGG 60.461 60.000 0.00 0.00 0.00 3.46
166 167 2.435059 GGACGAGCAGGTGAAGGC 60.435 66.667 0.00 0.00 0.00 4.35
167 168 2.811317 GACGAGCAGGTGAAGGCG 60.811 66.667 0.00 0.00 34.54 5.52
168 169 3.575351 GACGAGCAGGTGAAGGCGT 62.575 63.158 0.00 0.00 34.54 5.68
169 170 3.114616 CGAGCAGGTGAAGGCGTG 61.115 66.667 0.00 0.00 34.54 5.34
170 171 2.743928 GAGCAGGTGAAGGCGTGG 60.744 66.667 0.00 0.00 34.54 4.94
171 172 3.537206 GAGCAGGTGAAGGCGTGGT 62.537 63.158 0.00 0.00 37.62 4.16
172 173 2.167398 GAGCAGGTGAAGGCGTGGTA 62.167 60.000 0.00 0.00 35.52 3.25
173 174 1.078426 GCAGGTGAAGGCGTGGTAT 60.078 57.895 0.00 0.00 0.00 2.73
174 175 1.090052 GCAGGTGAAGGCGTGGTATC 61.090 60.000 0.00 0.00 0.00 2.24
175 176 0.537188 CAGGTGAAGGCGTGGTATCT 59.463 55.000 0.00 0.00 0.00 1.98
176 177 0.537188 AGGTGAAGGCGTGGTATCTG 59.463 55.000 0.00 0.00 0.00 2.90
177 178 0.462047 GGTGAAGGCGTGGTATCTGG 60.462 60.000 0.00 0.00 0.00 3.86
178 179 1.090052 GTGAAGGCGTGGTATCTGGC 61.090 60.000 0.00 0.00 0.00 4.85
179 180 1.883084 GAAGGCGTGGTATCTGGCG 60.883 63.158 0.00 0.00 0.00 5.69
180 181 2.292794 GAAGGCGTGGTATCTGGCGA 62.293 60.000 0.00 0.00 0.00 5.54
181 182 1.895020 AAGGCGTGGTATCTGGCGAA 61.895 55.000 0.00 0.00 0.00 4.70
182 183 1.883084 GGCGTGGTATCTGGCGAAG 60.883 63.158 0.00 0.00 0.00 3.79
195 196 3.499737 CGAAGCGCGGCCTCATTT 61.500 61.111 8.83 0.00 36.03 2.32
196 197 2.405191 GAAGCGCGGCCTCATTTC 59.595 61.111 8.83 0.00 0.00 2.17
197 198 3.440356 GAAGCGCGGCCTCATTTCG 62.440 63.158 8.83 0.00 0.00 3.46
198 199 3.950794 AAGCGCGGCCTCATTTCGA 62.951 57.895 8.83 0.00 0.00 3.71
199 200 3.496131 GCGCGGCCTCATTTCGAA 61.496 61.111 8.83 0.00 0.00 3.71
200 201 2.399611 CGCGGCCTCATTTCGAAC 59.600 61.111 0.00 0.00 0.00 3.95
201 202 2.387445 CGCGGCCTCATTTCGAACA 61.387 57.895 0.00 0.00 0.00 3.18
202 203 1.873165 GCGGCCTCATTTCGAACAA 59.127 52.632 0.00 0.00 0.00 2.83
203 204 0.179189 GCGGCCTCATTTCGAACAAG 60.179 55.000 0.00 0.00 0.00 3.16
204 205 1.438651 CGGCCTCATTTCGAACAAGA 58.561 50.000 0.00 0.00 0.00 3.02
205 206 2.009774 CGGCCTCATTTCGAACAAGAT 58.990 47.619 0.00 0.00 0.00 2.40
206 207 2.223112 CGGCCTCATTTCGAACAAGATG 60.223 50.000 0.00 0.00 0.00 2.90
207 208 2.749621 GGCCTCATTTCGAACAAGATGT 59.250 45.455 0.00 0.00 0.00 3.06
208 209 3.181506 GGCCTCATTTCGAACAAGATGTC 60.182 47.826 0.00 0.00 0.00 3.06
209 210 3.484229 GCCTCATTTCGAACAAGATGTCG 60.484 47.826 0.00 0.00 0.00 4.35
210 211 3.062639 CCTCATTTCGAACAAGATGTCGG 59.937 47.826 0.00 1.38 0.00 4.79
211 212 3.000041 TCATTTCGAACAAGATGTCGGG 59.000 45.455 0.00 0.00 0.00 5.14
212 213 2.823924 TTTCGAACAAGATGTCGGGA 57.176 45.000 0.00 0.00 0.00 5.14
213 214 2.074547 TTCGAACAAGATGTCGGGAC 57.925 50.000 0.00 0.00 0.00 4.46
214 215 0.245539 TCGAACAAGATGTCGGGACC 59.754 55.000 0.00 0.00 0.00 4.46
215 216 1.076533 CGAACAAGATGTCGGGACCG 61.077 60.000 3.96 3.96 41.35 4.79
216 217 0.037605 GAACAAGATGTCGGGACCGT 60.038 55.000 10.90 0.00 40.74 4.83
217 218 0.037605 AACAAGATGTCGGGACCGTC 60.038 55.000 10.90 5.82 40.74 4.79
218 219 1.516386 CAAGATGTCGGGACCGTCG 60.516 63.158 10.90 0.00 40.74 5.12
219 220 2.707849 AAGATGTCGGGACCGTCGG 61.708 63.158 10.48 10.48 40.74 4.79
220 221 4.867599 GATGTCGGGACCGTCGGC 62.868 72.222 12.28 4.02 40.74 5.54
232 233 4.736896 GTCGGCGACCACCACTCC 62.737 72.222 28.72 0.05 0.00 3.85
233 234 4.988716 TCGGCGACCACCACTCCT 62.989 66.667 4.99 0.00 0.00 3.69
234 235 3.066190 CGGCGACCACCACTCCTA 61.066 66.667 0.00 0.00 0.00 2.94
235 236 2.577593 GGCGACCACCACTCCTAC 59.422 66.667 0.00 0.00 0.00 3.18
236 237 2.181021 GCGACCACCACTCCTACG 59.819 66.667 0.00 0.00 0.00 3.51
237 238 2.181021 CGACCACCACTCCTACGC 59.819 66.667 0.00 0.00 0.00 4.42
238 239 2.577593 GACCACCACTCCTACGCC 59.422 66.667 0.00 0.00 0.00 5.68
239 240 2.203728 ACCACCACTCCTACGCCA 60.204 61.111 0.00 0.00 0.00 5.69
240 241 1.823169 GACCACCACTCCTACGCCAA 61.823 60.000 0.00 0.00 0.00 4.52
241 242 1.375523 CCACCACTCCTACGCCAAC 60.376 63.158 0.00 0.00 0.00 3.77
243 244 2.813908 CCACTCCTACGCCAACGC 60.814 66.667 0.00 0.00 45.53 4.84
244 245 2.813908 CACTCCTACGCCAACGCC 60.814 66.667 0.00 0.00 45.53 5.68
245 246 4.430765 ACTCCTACGCCAACGCCG 62.431 66.667 0.00 0.00 45.53 6.46
246 247 4.124351 CTCCTACGCCAACGCCGA 62.124 66.667 0.00 0.00 45.53 5.54
247 248 4.424566 TCCTACGCCAACGCCGAC 62.425 66.667 0.00 0.00 45.53 4.79
265 266 4.373116 GCCGAGCCCGAACACTGA 62.373 66.667 0.00 0.00 38.22 3.41
266 267 2.342279 CCGAGCCCGAACACTGAA 59.658 61.111 0.00 0.00 38.22 3.02
267 268 1.738099 CCGAGCCCGAACACTGAAG 60.738 63.158 0.00 0.00 38.22 3.02
268 269 2.383527 CGAGCCCGAACACTGAAGC 61.384 63.158 0.00 0.00 38.22 3.86
269 270 1.301716 GAGCCCGAACACTGAAGCA 60.302 57.895 0.00 0.00 0.00 3.91
270 271 1.294659 GAGCCCGAACACTGAAGCAG 61.295 60.000 0.00 0.00 37.52 4.24
271 272 1.598130 GCCCGAACACTGAAGCAGT 60.598 57.895 0.00 0.00 46.51 4.40
295 296 4.933064 GCCGATGCCGACTCCGAG 62.933 72.222 0.00 0.00 38.22 4.63
296 297 4.933064 CCGATGCCGACTCCGAGC 62.933 72.222 0.00 0.00 38.22 5.03
297 298 4.933064 CGATGCCGACTCCGAGCC 62.933 72.222 0.00 0.00 38.22 4.70
298 299 4.593864 GATGCCGACTCCGAGCCC 62.594 72.222 0.00 0.00 38.22 5.19
304 305 4.500116 GACTCCGAGCCCGAGCAC 62.500 72.222 0.00 0.00 43.56 4.40
306 307 4.504916 CTCCGAGCCCGAGCACTG 62.505 72.222 0.00 0.00 43.56 3.66
308 309 3.449227 CCGAGCCCGAGCACTGTA 61.449 66.667 0.00 0.00 43.56 2.74
309 310 2.103143 CGAGCCCGAGCACTGTAG 59.897 66.667 0.00 0.00 43.56 2.74
310 311 2.202810 GAGCCCGAGCACTGTAGC 60.203 66.667 0.00 0.00 43.56 3.58
312 313 1.379977 AGCCCGAGCACTGTAGCTA 60.380 57.895 0.00 0.00 46.75 3.32
313 314 1.227002 GCCCGAGCACTGTAGCTAC 60.227 63.158 17.30 17.30 46.75 3.58
314 315 1.064296 CCCGAGCACTGTAGCTACG 59.936 63.158 18.74 15.12 46.75 3.51
315 316 1.586564 CCGAGCACTGTAGCTACGC 60.587 63.158 18.74 15.48 46.75 4.42
316 317 1.586564 CGAGCACTGTAGCTACGCC 60.587 63.158 18.74 9.25 46.75 5.68
317 318 1.227002 GAGCACTGTAGCTACGCCC 60.227 63.158 18.74 3.83 46.75 6.13
318 319 1.945354 GAGCACTGTAGCTACGCCCA 61.945 60.000 18.74 0.47 46.75 5.36
319 320 1.144057 GCACTGTAGCTACGCCCAT 59.856 57.895 18.74 0.00 0.00 4.00
320 321 1.154205 GCACTGTAGCTACGCCCATG 61.154 60.000 18.74 12.43 0.00 3.66
321 322 1.144057 ACTGTAGCTACGCCCATGC 59.856 57.895 18.74 0.00 0.00 4.06
322 323 1.595382 CTGTAGCTACGCCCATGCC 60.595 63.158 18.74 0.00 0.00 4.40
323 324 2.661866 GTAGCTACGCCCATGCCG 60.662 66.667 8.40 2.92 0.00 5.69
324 325 4.602259 TAGCTACGCCCATGCCGC 62.602 66.667 4.21 0.00 0.00 6.53
342 343 4.056125 CCCGAGCACGAGCACTGA 62.056 66.667 7.77 0.00 45.49 3.41
343 344 2.049156 CCGAGCACGAGCACTGAA 60.049 61.111 7.77 0.00 45.49 3.02
344 345 2.091112 CCGAGCACGAGCACTGAAG 61.091 63.158 7.77 0.00 45.49 3.02
345 346 1.372251 CGAGCACGAGCACTGAAGT 60.372 57.895 7.77 0.00 45.49 3.01
346 347 0.941463 CGAGCACGAGCACTGAAGTT 60.941 55.000 7.77 0.00 45.49 2.66
347 348 0.510359 GAGCACGAGCACTGAAGTTG 59.490 55.000 7.77 0.00 45.49 3.16
348 349 0.179073 AGCACGAGCACTGAAGTTGT 60.179 50.000 7.77 0.00 45.49 3.32
349 350 0.041839 GCACGAGCACTGAAGTTGTG 60.042 55.000 0.00 0.00 41.58 3.33
355 356 1.564622 CACTGAAGTTGTGCCGACG 59.435 57.895 0.00 0.00 0.00 5.12
356 357 2.244651 ACTGAAGTTGTGCCGACGC 61.245 57.895 0.00 0.00 0.00 5.19
357 358 2.954753 CTGAAGTTGTGCCGACGCC 61.955 63.158 0.00 0.00 0.00 5.68
358 359 4.072088 GAAGTTGTGCCGACGCCG 62.072 66.667 0.00 0.00 0.00 6.46
359 360 4.595538 AAGTTGTGCCGACGCCGA 62.596 61.111 0.00 0.00 38.22 5.54
419 420 7.229707 AGCATCTACTACCATTCACAGTACTAG 59.770 40.741 0.00 0.00 0.00 2.57
460 461 4.281182 ACTGAAGTAACTGGTGTACTCCTG 59.719 45.833 16.62 16.62 0.00 3.86
467 468 1.893137 CTGGTGTACTCCTGCTGTACA 59.107 52.381 14.75 0.00 45.21 2.90
517 518 3.479269 CGTCGCCGAGGAAACTGC 61.479 66.667 0.00 0.00 44.43 4.40
518 519 2.048127 GTCGCCGAGGAAACTGCT 60.048 61.111 0.00 0.00 44.43 4.24
529 530 0.375106 GAAACTGCTAGCCGTGCATC 59.625 55.000 12.88 8.14 39.86 3.91
577 581 1.730487 CGTCTGTGGATAGAGCGCT 59.270 57.895 11.27 11.27 0.00 5.92
709 750 3.202906 TGACTCCAACTGTAAACACTGC 58.797 45.455 0.00 0.00 0.00 4.40
710 751 3.202906 GACTCCAACTGTAAACACTGCA 58.797 45.455 0.00 0.00 0.00 4.41
713 754 5.373222 ACTCCAACTGTAAACACTGCATTA 58.627 37.500 0.00 0.00 0.00 1.90
924 970 4.038080 CCACCAAAACCGGCGAGC 62.038 66.667 9.30 0.00 0.00 5.03
925 971 4.383602 CACCAAAACCGGCGAGCG 62.384 66.667 9.30 0.00 0.00 5.03
980 1026 1.832167 CCCACCCAACCACCAACAG 60.832 63.158 0.00 0.00 0.00 3.16
990 1038 4.681978 ACCAACAGACGCGCCTCC 62.682 66.667 5.73 0.00 0.00 4.30
1175 1237 1.943730 GCCTCCTCTCCTCCTCCTCA 61.944 65.000 0.00 0.00 0.00 3.86
1178 1240 1.287739 CTCCTCTCCTCCTCCTCAAGT 59.712 57.143 0.00 0.00 0.00 3.16
1220 1286 1.244816 CCACTCCCCGTTTCTTTTCC 58.755 55.000 0.00 0.00 0.00 3.13
1223 1289 1.493446 ACTCCCCGTTTCTTTTCCTGT 59.507 47.619 0.00 0.00 0.00 4.00
1233 1299 0.610687 CTTTTCCTGTCCCTCGCTCT 59.389 55.000 0.00 0.00 0.00 4.09
1248 1318 3.444916 TCGCTCTTCGATTAATGGTGAC 58.555 45.455 0.00 0.00 43.16 3.67
1263 1333 1.014352 GTGACGCTTCTTGGTGTGTT 58.986 50.000 0.00 0.00 0.00 3.32
1275 1345 1.353022 TGGTGTGTTAATCAGGGGTCC 59.647 52.381 0.00 0.00 0.00 4.46
1308 1378 1.953138 GATGTCGATGCCGCTGGAG 60.953 63.158 0.00 0.00 35.37 3.86
1506 1576 1.098712 GGGACAACAACAGAACGGCA 61.099 55.000 0.00 0.00 0.00 5.69
1794 1864 2.367202 GGATCCGGCCTTCCACAGA 61.367 63.158 0.00 0.00 31.99 3.41
1800 1870 4.704833 GCCTTCCACAGAGCGGCA 62.705 66.667 1.45 0.00 39.16 5.69
2082 2152 4.148825 GTCATGCGCCCGTCCTCT 62.149 66.667 4.18 0.00 0.00 3.69
2265 2335 4.659172 CGCCACCAGCCCCTCAAA 62.659 66.667 0.00 0.00 38.78 2.69
2467 2539 2.680339 GGTGGTAAAATCTCTGCTCAGC 59.320 50.000 0.00 0.00 0.00 4.26
2472 2544 0.610174 AAATCTCTGCTCAGCGGACA 59.390 50.000 3.22 0.00 39.19 4.02
2473 2545 0.829333 AATCTCTGCTCAGCGGACAT 59.171 50.000 3.22 0.00 39.19 3.06
2474 2546 0.388659 ATCTCTGCTCAGCGGACATC 59.611 55.000 3.22 0.00 39.19 3.06
2475 2547 1.588403 CTCTGCTCAGCGGACATCG 60.588 63.158 3.22 0.00 39.19 3.84
3126 3288 1.134530 GCGACGATCTGAACGACCAG 61.135 60.000 14.36 0.00 35.55 4.00
3316 3486 3.876320 GCTGGTCTTCTGATCAATCTTCC 59.124 47.826 0.00 0.00 32.23 3.46
3318 3488 3.845992 TGGTCTTCTGATCAATCTTCCCA 59.154 43.478 0.00 0.00 29.04 4.37
3471 7460 5.546499 TGTTACTGTTCTTAGGAGTCCCAAT 59.454 40.000 5.25 0.00 33.88 3.16
3472 7461 4.559862 ACTGTTCTTAGGAGTCCCAATG 57.440 45.455 5.25 0.00 33.88 2.82
3473 7462 4.168101 ACTGTTCTTAGGAGTCCCAATGA 58.832 43.478 5.25 0.00 33.88 2.57
3474 7463 4.597507 ACTGTTCTTAGGAGTCCCAATGAA 59.402 41.667 5.25 6.00 33.88 2.57
3475 7464 5.251700 ACTGTTCTTAGGAGTCCCAATGAAT 59.748 40.000 5.25 0.00 33.88 2.57
3523 7553 2.981400 ATTTAAGTGTGTTTCCCGCG 57.019 45.000 0.00 0.00 0.00 6.46
3663 8052 1.161843 TGACTCGTCTCGCACATGTA 58.838 50.000 0.00 0.00 0.00 2.29
3782 8188 1.135689 GCCTACCAAGTGCGTTTCATG 60.136 52.381 0.00 0.00 0.00 3.07
3847 8253 5.290386 GCTATCCTACTGTGTATGGTTGTC 58.710 45.833 0.00 0.00 0.00 3.18
3848 8254 5.163447 GCTATCCTACTGTGTATGGTTGTCA 60.163 44.000 0.00 0.00 0.00 3.58
3849 8255 4.530710 TCCTACTGTGTATGGTTGTCAC 57.469 45.455 0.00 0.00 0.00 3.67
3850 8256 4.157246 TCCTACTGTGTATGGTTGTCACT 58.843 43.478 0.00 0.00 33.82 3.41
3851 8257 4.021456 TCCTACTGTGTATGGTTGTCACTG 60.021 45.833 0.00 0.00 37.17 3.66
3852 8258 3.838244 ACTGTGTATGGTTGTCACTGT 57.162 42.857 0.00 0.00 38.64 3.55
3853 8259 4.150897 ACTGTGTATGGTTGTCACTGTT 57.849 40.909 0.00 0.00 39.76 3.16
3854 8260 3.876914 ACTGTGTATGGTTGTCACTGTTG 59.123 43.478 0.00 0.00 39.76 3.33
3855 8261 4.126437 CTGTGTATGGTTGTCACTGTTGA 58.874 43.478 0.00 0.00 33.82 3.18
3872 8278 8.620416 TCACTGTTGACATATAAATGTATTGCC 58.380 33.333 0.00 0.00 46.49 4.52
3874 8280 9.845740 ACTGTTGACATATAAATGTATTGCCTA 57.154 29.630 0.00 0.00 46.49 3.93
3876 8282 9.845740 TGTTGACATATAAATGTATTGCCTAGT 57.154 29.630 0.00 0.00 46.49 2.57
3886 8292 6.851222 ATGTATTGCCTAGTTCTTTCATCG 57.149 37.500 0.00 0.00 0.00 3.84
3887 8293 5.116180 TGTATTGCCTAGTTCTTTCATCGG 58.884 41.667 0.00 0.00 0.00 4.18
3919 8325 5.465532 TTTTGTTTGCATTGGATAGAGCA 57.534 34.783 0.00 0.00 34.79 4.26
3921 8327 4.642445 TGTTTGCATTGGATAGAGCATG 57.358 40.909 0.00 0.00 36.80 4.06
3922 8328 3.181484 TGTTTGCATTGGATAGAGCATGC 60.181 43.478 10.51 10.51 42.07 4.06
3924 8330 1.951602 TGCATTGGATAGAGCATGCAC 59.048 47.619 21.98 14.59 45.50 4.57
3925 8331 2.228059 GCATTGGATAGAGCATGCACT 58.772 47.619 21.45 21.45 41.47 4.40
3926 8332 2.621998 GCATTGGATAGAGCATGCACTT 59.378 45.455 22.83 10.73 41.47 3.16
3928 8334 3.920231 TTGGATAGAGCATGCACTTCT 57.080 42.857 22.83 17.00 34.26 2.85
3930 8336 4.327982 TGGATAGAGCATGCACTTCTAC 57.672 45.455 22.83 11.98 28.63 2.59
3931 8337 3.706086 TGGATAGAGCATGCACTTCTACA 59.294 43.478 22.83 14.30 28.63 2.74
3932 8338 4.202192 TGGATAGAGCATGCACTTCTACAG 60.202 45.833 22.83 0.00 28.63 2.74
3947 8730 4.481368 TCTACAGTCACAACCACTTGTT 57.519 40.909 0.00 0.00 38.66 2.83
3981 8764 1.112950 CTGCATGCTCTCCTCTCTCA 58.887 55.000 20.33 0.00 0.00 3.27
4051 8843 2.416747 GCAAAAGCCCAATCCAAACTC 58.583 47.619 0.00 0.00 0.00 3.01
4053 8845 3.392882 CAAAAGCCCAATCCAAACTCAC 58.607 45.455 0.00 0.00 0.00 3.51
4062 8854 6.578023 CCCAATCCAAACTCACAACTAAAAA 58.422 36.000 0.00 0.00 0.00 1.94
4147 8939 4.137543 GGGTAGGCAATTACAAGATCAGG 58.862 47.826 0.00 0.00 0.00 3.86
4247 9112 4.458989 CGCCAAGCACCCAATGTATATATT 59.541 41.667 0.00 0.00 0.00 1.28
4256 9121 7.415541 GCACCCAATGTATATATTGCCATGTAG 60.416 40.741 14.86 2.23 36.86 2.74
4387 9256 3.861689 GCAATGCAGATGGCTAAAGAAAC 59.138 43.478 0.00 0.00 45.15 2.78
4397 9266 3.314080 TGGCTAAAGAAACCAAGAACACG 59.686 43.478 0.00 0.00 0.00 4.49
4399 9268 4.512571 GGCTAAAGAAACCAAGAACACGTA 59.487 41.667 0.00 0.00 0.00 3.57
4433 9302 1.348036 GCCACCACTGTTAGGAACTCT 59.652 52.381 0.00 0.00 41.75 3.24
4479 9348 7.871853 AGTAAATGTAATGTGTCAAACTGTCC 58.128 34.615 0.00 0.00 0.00 4.02
4490 9359 3.001330 GTCAAACTGTCCACAGAAACTCG 59.999 47.826 13.75 0.00 46.59 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.247380 CTCCTCCCTCATGGCCGC 62.247 72.222 0.00 0.00 0.00 6.53
3 4 1.626356 TTTCTCCTCCCTCATGGCCG 61.626 60.000 0.00 0.00 0.00 6.13
4 5 0.849417 ATTTCTCCTCCCTCATGGCC 59.151 55.000 0.00 0.00 0.00 5.36
5 6 1.202867 GGATTTCTCCTCCCTCATGGC 60.203 57.143 0.00 0.00 38.65 4.40
6 7 1.071385 CGGATTTCTCCTCCCTCATGG 59.929 57.143 0.00 0.00 39.65 3.66
7 8 2.042464 TCGGATTTCTCCTCCCTCATG 58.958 52.381 0.00 0.00 39.65 3.07
8 9 2.478872 TCGGATTTCTCCTCCCTCAT 57.521 50.000 0.00 0.00 39.65 2.90
9 10 2.042464 CATCGGATTTCTCCTCCCTCA 58.958 52.381 0.00 0.00 39.65 3.86
10 11 1.270571 GCATCGGATTTCTCCTCCCTC 60.271 57.143 0.00 0.00 39.65 4.30
11 12 0.761802 GCATCGGATTTCTCCTCCCT 59.238 55.000 0.00 0.00 39.65 4.20
12 13 0.601311 CGCATCGGATTTCTCCTCCC 60.601 60.000 0.00 0.00 39.65 4.30
13 14 0.389391 TCGCATCGGATTTCTCCTCC 59.611 55.000 0.00 0.00 39.65 4.30
14 15 1.604185 CCTCGCATCGGATTTCTCCTC 60.604 57.143 0.00 0.00 39.65 3.71
15 16 0.390860 CCTCGCATCGGATTTCTCCT 59.609 55.000 0.00 0.00 39.65 3.69
16 17 0.105039 ACCTCGCATCGGATTTCTCC 59.895 55.000 0.00 0.00 38.29 3.71
17 18 2.034812 ACTACCTCGCATCGGATTTCTC 59.965 50.000 0.00 0.00 0.00 2.87
18 19 2.032620 ACTACCTCGCATCGGATTTCT 58.967 47.619 0.00 0.00 0.00 2.52
19 20 2.223735 TGACTACCTCGCATCGGATTTC 60.224 50.000 0.00 0.00 0.00 2.17
20 21 1.754803 TGACTACCTCGCATCGGATTT 59.245 47.619 0.00 0.00 0.00 2.17
21 22 1.338337 CTGACTACCTCGCATCGGATT 59.662 52.381 0.00 0.00 0.00 3.01
22 23 0.955178 CTGACTACCTCGCATCGGAT 59.045 55.000 0.00 0.00 0.00 4.18
23 24 0.393944 ACTGACTACCTCGCATCGGA 60.394 55.000 0.00 0.00 0.00 4.55
24 25 0.248661 CACTGACTACCTCGCATCGG 60.249 60.000 0.00 0.00 0.00 4.18
25 26 0.452184 ACACTGACTACCTCGCATCG 59.548 55.000 0.00 0.00 0.00 3.84
26 27 2.094700 TCAACACTGACTACCTCGCATC 60.095 50.000 0.00 0.00 0.00 3.91
27 28 1.893137 TCAACACTGACTACCTCGCAT 59.107 47.619 0.00 0.00 0.00 4.73
28 29 1.324383 TCAACACTGACTACCTCGCA 58.676 50.000 0.00 0.00 0.00 5.10
29 30 2.094700 TCATCAACACTGACTACCTCGC 60.095 50.000 0.00 0.00 33.30 5.03
30 31 3.502920 GTCATCAACACTGACTACCTCG 58.497 50.000 0.00 0.00 39.90 4.63
31 32 3.190744 TCGTCATCAACACTGACTACCTC 59.809 47.826 2.39 0.00 40.68 3.85
32 33 3.154710 TCGTCATCAACACTGACTACCT 58.845 45.455 2.39 0.00 40.68 3.08
33 34 3.570926 TCGTCATCAACACTGACTACC 57.429 47.619 2.39 0.00 40.68 3.18
34 35 3.365220 GCTTCGTCATCAACACTGACTAC 59.635 47.826 2.39 0.00 40.68 2.73
35 36 3.005367 TGCTTCGTCATCAACACTGACTA 59.995 43.478 2.39 0.00 40.68 2.59
36 37 2.224042 TGCTTCGTCATCAACACTGACT 60.224 45.455 2.39 0.00 40.68 3.41
37 38 2.135139 TGCTTCGTCATCAACACTGAC 58.865 47.619 0.00 0.00 39.69 3.51
38 39 2.407090 CTGCTTCGTCATCAACACTGA 58.593 47.619 0.00 0.00 35.56 3.41
39 40 1.462283 CCTGCTTCGTCATCAACACTG 59.538 52.381 0.00 0.00 0.00 3.66
40 41 1.344438 TCCTGCTTCGTCATCAACACT 59.656 47.619 0.00 0.00 0.00 3.55
41 42 1.461127 GTCCTGCTTCGTCATCAACAC 59.539 52.381 0.00 0.00 0.00 3.32
42 43 1.608025 GGTCCTGCTTCGTCATCAACA 60.608 52.381 0.00 0.00 0.00 3.33
43 44 1.079503 GGTCCTGCTTCGTCATCAAC 58.920 55.000 0.00 0.00 0.00 3.18
44 45 0.036388 GGGTCCTGCTTCGTCATCAA 60.036 55.000 0.00 0.00 0.00 2.57
45 46 1.596934 GGGTCCTGCTTCGTCATCA 59.403 57.895 0.00 0.00 0.00 3.07
46 47 1.153349 GGGGTCCTGCTTCGTCATC 60.153 63.158 0.00 0.00 0.00 2.92
47 48 1.488705 TTGGGGTCCTGCTTCGTCAT 61.489 55.000 0.00 0.00 0.00 3.06
48 49 1.701031 TTTGGGGTCCTGCTTCGTCA 61.701 55.000 0.00 0.00 0.00 4.35
49 50 1.072505 TTTGGGGTCCTGCTTCGTC 59.927 57.895 0.00 0.00 0.00 4.20
50 51 1.228154 GTTTGGGGTCCTGCTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
51 52 0.955919 GAGTTTGGGGTCCTGCTTCG 60.956 60.000 0.00 0.00 0.00 3.79
52 53 0.955919 CGAGTTTGGGGTCCTGCTTC 60.956 60.000 0.00 0.00 0.00 3.86
53 54 1.073199 CGAGTTTGGGGTCCTGCTT 59.927 57.895 0.00 0.00 0.00 3.91
54 55 1.841556 TCGAGTTTGGGGTCCTGCT 60.842 57.895 0.00 0.00 0.00 4.24
55 56 1.671379 GTCGAGTTTGGGGTCCTGC 60.671 63.158 0.00 0.00 0.00 4.85
56 57 1.003718 GGTCGAGTTTGGGGTCCTG 60.004 63.158 0.00 0.00 0.00 3.86
57 58 0.767060 AAGGTCGAGTTTGGGGTCCT 60.767 55.000 0.00 0.00 0.00 3.85
58 59 0.321387 GAAGGTCGAGTTTGGGGTCC 60.321 60.000 0.00 0.00 0.00 4.46
59 60 0.685660 AGAAGGTCGAGTTTGGGGTC 59.314 55.000 0.00 0.00 0.00 4.46
60 61 0.685660 GAGAAGGTCGAGTTTGGGGT 59.314 55.000 0.00 0.00 0.00 4.95
61 62 0.685097 TGAGAAGGTCGAGTTTGGGG 59.315 55.000 0.00 0.00 0.00 4.96
62 63 1.941668 GCTGAGAAGGTCGAGTTTGGG 60.942 57.143 0.00 0.00 0.00 4.12
63 64 1.270305 TGCTGAGAAGGTCGAGTTTGG 60.270 52.381 0.00 0.00 0.00 3.28
64 65 1.795286 GTGCTGAGAAGGTCGAGTTTG 59.205 52.381 0.00 0.00 0.00 2.93
65 66 1.270358 GGTGCTGAGAAGGTCGAGTTT 60.270 52.381 0.00 0.00 0.00 2.66
66 67 0.318762 GGTGCTGAGAAGGTCGAGTT 59.681 55.000 0.00 0.00 0.00 3.01
67 68 0.827925 TGGTGCTGAGAAGGTCGAGT 60.828 55.000 0.00 0.00 0.00 4.18
68 69 0.318441 TTGGTGCTGAGAAGGTCGAG 59.682 55.000 0.00 0.00 0.00 4.04
69 70 0.033504 GTTGGTGCTGAGAAGGTCGA 59.966 55.000 0.00 0.00 0.00 4.20
70 71 1.284982 CGTTGGTGCTGAGAAGGTCG 61.285 60.000 0.00 0.00 0.00 4.79
71 72 0.249911 ACGTTGGTGCTGAGAAGGTC 60.250 55.000 0.00 0.00 0.00 3.85
72 73 0.249911 GACGTTGGTGCTGAGAAGGT 60.250 55.000 0.00 0.00 0.00 3.50
73 74 1.284982 CGACGTTGGTGCTGAGAAGG 61.285 60.000 0.00 0.00 0.00 3.46
74 75 1.891060 GCGACGTTGGTGCTGAGAAG 61.891 60.000 4.64 0.00 0.00 2.85
75 76 1.954146 GCGACGTTGGTGCTGAGAA 60.954 57.895 4.64 0.00 0.00 2.87
76 77 2.355837 GCGACGTTGGTGCTGAGA 60.356 61.111 4.64 0.00 0.00 3.27
77 78 2.356313 AGCGACGTTGGTGCTGAG 60.356 61.111 6.72 0.00 37.62 3.35
82 83 3.281751 CTTCGCAGCGACGTTGGTG 62.282 63.158 27.01 27.01 40.25 4.17
83 84 2.964438 TTCTTCGCAGCGACGTTGGT 62.964 55.000 19.37 0.46 34.89 3.67
84 85 2.215478 CTTCTTCGCAGCGACGTTGG 62.215 60.000 19.37 6.75 34.89 3.77
85 86 1.128611 CTTCTTCGCAGCGACGTTG 59.871 57.895 19.37 7.39 34.89 4.10
86 87 1.004277 CTCTTCTTCGCAGCGACGTT 61.004 55.000 19.37 0.00 34.89 3.99
87 88 1.442857 CTCTTCTTCGCAGCGACGT 60.443 57.895 19.37 0.00 34.89 4.34
88 89 2.155194 CCTCTTCTTCGCAGCGACG 61.155 63.158 19.37 16.90 34.89 5.12
89 90 0.388649 TTCCTCTTCTTCGCAGCGAC 60.389 55.000 19.37 0.00 34.89 5.19
90 91 0.317160 TTTCCTCTTCTTCGCAGCGA 59.683 50.000 15.11 15.11 0.00 4.93
91 92 0.718343 CTTTCCTCTTCTTCGCAGCG 59.282 55.000 9.06 9.06 0.00 5.18
92 93 1.082690 CCTTTCCTCTTCTTCGCAGC 58.917 55.000 0.00 0.00 0.00 5.25
93 94 2.342179 GTCCTTTCCTCTTCTTCGCAG 58.658 52.381 0.00 0.00 0.00 5.18
94 95 1.002087 GGTCCTTTCCTCTTCTTCGCA 59.998 52.381 0.00 0.00 0.00 5.10
95 96 1.276705 AGGTCCTTTCCTCTTCTTCGC 59.723 52.381 0.00 0.00 31.32 4.70
96 97 2.300437 ACAGGTCCTTTCCTCTTCTTCG 59.700 50.000 0.00 0.00 35.37 3.79
97 98 3.615351 CGACAGGTCCTTTCCTCTTCTTC 60.615 52.174 0.00 0.00 35.37 2.87
98 99 2.300437 CGACAGGTCCTTTCCTCTTCTT 59.700 50.000 0.00 0.00 35.37 2.52
99 100 1.896465 CGACAGGTCCTTTCCTCTTCT 59.104 52.381 0.00 0.00 35.37 2.85
100 101 1.619332 ACGACAGGTCCTTTCCTCTTC 59.381 52.381 0.00 0.00 35.37 2.87
101 102 1.718280 ACGACAGGTCCTTTCCTCTT 58.282 50.000 0.00 0.00 35.37 2.85
102 103 1.619332 GAACGACAGGTCCTTTCCTCT 59.381 52.381 0.00 0.00 35.37 3.69
103 104 1.619332 AGAACGACAGGTCCTTTCCTC 59.381 52.381 0.00 0.00 35.37 3.71
104 105 1.718280 AGAACGACAGGTCCTTTCCT 58.282 50.000 0.00 0.00 38.51 3.36
105 106 2.143925 CAAGAACGACAGGTCCTTTCC 58.856 52.381 0.00 0.00 33.65 3.13
106 107 2.801111 GTCAAGAACGACAGGTCCTTTC 59.199 50.000 0.00 0.00 33.65 2.62
107 108 2.835027 GTCAAGAACGACAGGTCCTTT 58.165 47.619 0.00 0.00 33.65 3.11
108 109 2.528041 GTCAAGAACGACAGGTCCTT 57.472 50.000 0.00 0.00 33.65 3.36
119 120 0.033504 TGTCTGCCCTCGTCAAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
120 121 0.033504 GTGTCTGCCCTCGTCAAGAA 59.966 55.000 0.00 0.00 0.00 2.52
121 122 1.666011 GTGTCTGCCCTCGTCAAGA 59.334 57.895 0.00 0.00 0.00 3.02
122 123 1.734477 CGTGTCTGCCCTCGTCAAG 60.734 63.158 0.00 0.00 0.00 3.02
123 124 2.338620 CGTGTCTGCCCTCGTCAA 59.661 61.111 0.00 0.00 0.00 3.18
124 125 2.910479 ACGTGTCTGCCCTCGTCA 60.910 61.111 0.00 0.00 30.71 4.35
125 126 2.126424 GACGTGTCTGCCCTCGTC 60.126 66.667 0.00 0.00 43.81 4.20
126 127 4.039357 CGACGTGTCTGCCCTCGT 62.039 66.667 0.00 0.00 39.21 4.18
127 128 3.733960 TCGACGTGTCTGCCCTCG 61.734 66.667 0.00 0.00 0.00 4.63
128 129 2.126424 GTCGACGTGTCTGCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
129 130 4.039357 CGTCGACGTGTCTGCCCT 62.039 66.667 29.08 0.00 34.11 5.19
130 131 3.338126 ATCGTCGACGTGTCTGCCC 62.338 63.158 34.40 0.00 40.80 5.36
131 132 2.152699 CATCGTCGACGTGTCTGCC 61.153 63.158 34.40 0.00 40.80 4.85
132 133 2.152699 CCATCGTCGACGTGTCTGC 61.153 63.158 34.40 0.00 40.80 4.26
133 134 0.793478 GTCCATCGTCGACGTGTCTG 60.793 60.000 34.40 25.06 40.80 3.51
134 135 1.500844 GTCCATCGTCGACGTGTCT 59.499 57.895 34.40 16.74 40.80 3.41
135 136 1.862147 CGTCCATCGTCGACGTGTC 60.862 63.158 34.40 22.48 46.17 3.67
136 137 2.175078 CGTCCATCGTCGACGTGT 59.825 61.111 34.40 22.56 46.17 4.49
140 141 1.583967 CTGCTCGTCCATCGTCGAC 60.584 63.158 5.18 5.18 40.80 4.20
141 142 2.761195 CCTGCTCGTCCATCGTCGA 61.761 63.158 0.00 0.00 40.80 4.20
142 143 2.278206 CCTGCTCGTCCATCGTCG 60.278 66.667 0.00 0.00 40.80 5.12
143 144 1.517257 CACCTGCTCGTCCATCGTC 60.517 63.158 0.00 0.00 40.80 4.20
144 145 1.532604 TTCACCTGCTCGTCCATCGT 61.533 55.000 0.00 0.00 40.80 3.73
145 146 0.803768 CTTCACCTGCTCGTCCATCG 60.804 60.000 0.00 0.00 41.41 3.84
146 147 0.460987 CCTTCACCTGCTCGTCCATC 60.461 60.000 0.00 0.00 0.00 3.51
147 148 1.599047 CCTTCACCTGCTCGTCCAT 59.401 57.895 0.00 0.00 0.00 3.41
148 149 3.059982 CCTTCACCTGCTCGTCCA 58.940 61.111 0.00 0.00 0.00 4.02
149 150 2.435059 GCCTTCACCTGCTCGTCC 60.435 66.667 0.00 0.00 0.00 4.79
150 151 2.811317 CGCCTTCACCTGCTCGTC 60.811 66.667 0.00 0.00 0.00 4.20
151 152 3.616721 ACGCCTTCACCTGCTCGT 61.617 61.111 0.00 0.00 0.00 4.18
152 153 3.114616 CACGCCTTCACCTGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
153 154 2.167398 TACCACGCCTTCACCTGCTC 62.167 60.000 0.00 0.00 0.00 4.26
154 155 1.553690 ATACCACGCCTTCACCTGCT 61.554 55.000 0.00 0.00 0.00 4.24
155 156 1.078426 ATACCACGCCTTCACCTGC 60.078 57.895 0.00 0.00 0.00 4.85
156 157 0.537188 AGATACCACGCCTTCACCTG 59.463 55.000 0.00 0.00 0.00 4.00
157 158 0.537188 CAGATACCACGCCTTCACCT 59.463 55.000 0.00 0.00 0.00 4.00
158 159 0.462047 CCAGATACCACGCCTTCACC 60.462 60.000 0.00 0.00 0.00 4.02
159 160 1.090052 GCCAGATACCACGCCTTCAC 61.090 60.000 0.00 0.00 0.00 3.18
160 161 1.220749 GCCAGATACCACGCCTTCA 59.779 57.895 0.00 0.00 0.00 3.02
161 162 1.883084 CGCCAGATACCACGCCTTC 60.883 63.158 0.00 0.00 0.00 3.46
162 163 1.895020 TTCGCCAGATACCACGCCTT 61.895 55.000 0.00 0.00 0.00 4.35
163 164 2.298158 CTTCGCCAGATACCACGCCT 62.298 60.000 0.00 0.00 0.00 5.52
164 165 1.883084 CTTCGCCAGATACCACGCC 60.883 63.158 0.00 0.00 0.00 5.68
165 166 2.526120 GCTTCGCCAGATACCACGC 61.526 63.158 0.00 0.00 0.00 5.34
166 167 2.230940 CGCTTCGCCAGATACCACG 61.231 63.158 0.00 0.00 0.00 4.94
167 168 3.706140 CGCTTCGCCAGATACCAC 58.294 61.111 0.00 0.00 0.00 4.16
178 179 3.440356 GAAATGAGGCCGCGCTTCG 62.440 63.158 5.56 0.00 37.47 3.79
179 180 2.405191 GAAATGAGGCCGCGCTTC 59.595 61.111 5.56 2.86 35.17 3.86
180 181 3.499737 CGAAATGAGGCCGCGCTT 61.500 61.111 5.56 0.00 0.00 4.68
181 182 3.950794 TTCGAAATGAGGCCGCGCT 62.951 57.895 5.56 0.00 0.00 5.92
182 183 3.496131 TTCGAAATGAGGCCGCGC 61.496 61.111 0.00 0.00 0.00 6.86
183 184 1.906994 TTGTTCGAAATGAGGCCGCG 61.907 55.000 0.00 0.00 0.00 6.46
184 185 0.179189 CTTGTTCGAAATGAGGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
185 186 1.438651 TCTTGTTCGAAATGAGGCCG 58.561 50.000 0.00 0.00 0.00 6.13
186 187 2.749621 ACATCTTGTTCGAAATGAGGCC 59.250 45.455 13.16 0.00 0.00 5.19
187 188 3.484229 CGACATCTTGTTCGAAATGAGGC 60.484 47.826 13.16 0.00 0.00 4.70
188 189 3.062639 CCGACATCTTGTTCGAAATGAGG 59.937 47.826 13.16 11.45 0.00 3.86
189 190 3.062639 CCCGACATCTTGTTCGAAATGAG 59.937 47.826 13.16 6.06 0.00 2.90
190 191 3.000041 CCCGACATCTTGTTCGAAATGA 59.000 45.455 13.16 6.52 0.00 2.57
191 192 3.000041 TCCCGACATCTTGTTCGAAATG 59.000 45.455 0.00 2.38 0.00 2.32
192 193 3.000727 GTCCCGACATCTTGTTCGAAAT 58.999 45.455 0.00 0.00 0.00 2.17
193 194 2.409975 GTCCCGACATCTTGTTCGAAA 58.590 47.619 0.00 0.00 0.00 3.46
194 195 1.337447 GGTCCCGACATCTTGTTCGAA 60.337 52.381 0.00 0.00 0.00 3.71
195 196 0.245539 GGTCCCGACATCTTGTTCGA 59.754 55.000 0.00 0.00 0.00 3.71
196 197 1.076533 CGGTCCCGACATCTTGTTCG 61.077 60.000 0.00 0.00 42.83 3.95
197 198 0.037605 ACGGTCCCGACATCTTGTTC 60.038 55.000 13.54 0.00 42.83 3.18
198 199 0.037605 GACGGTCCCGACATCTTGTT 60.038 55.000 13.54 0.00 42.83 2.83
199 200 1.590147 GACGGTCCCGACATCTTGT 59.410 57.895 13.54 0.00 42.83 3.16
200 201 1.516386 CGACGGTCCCGACATCTTG 60.516 63.158 13.54 0.00 42.83 3.02
201 202 2.707849 CCGACGGTCCCGACATCTT 61.708 63.158 13.54 0.00 42.83 2.40
202 203 3.138798 CCGACGGTCCCGACATCT 61.139 66.667 13.54 0.00 42.83 2.90
203 204 4.867599 GCCGACGGTCCCGACATC 62.868 72.222 16.73 0.00 42.83 3.06
215 216 4.736896 GGAGTGGTGGTCGCCGAC 62.737 72.222 9.15 9.15 0.00 4.79
216 217 3.572447 TAGGAGTGGTGGTCGCCGA 62.572 63.158 0.00 0.00 0.00 5.54
217 218 3.066190 TAGGAGTGGTGGTCGCCG 61.066 66.667 0.00 0.00 0.00 6.46
218 219 2.577593 GTAGGAGTGGTGGTCGCC 59.422 66.667 0.00 0.00 0.00 5.54
219 220 2.181021 CGTAGGAGTGGTGGTCGC 59.819 66.667 0.00 0.00 0.00 5.19
220 221 2.181021 GCGTAGGAGTGGTGGTCG 59.819 66.667 0.00 0.00 0.00 4.79
221 222 1.823169 TTGGCGTAGGAGTGGTGGTC 61.823 60.000 0.00 0.00 0.00 4.02
222 223 1.839747 TTGGCGTAGGAGTGGTGGT 60.840 57.895 0.00 0.00 0.00 4.16
223 224 1.375523 GTTGGCGTAGGAGTGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
224 225 1.736645 CGTTGGCGTAGGAGTGGTG 60.737 63.158 0.00 0.00 0.00 4.17
225 226 2.654877 CGTTGGCGTAGGAGTGGT 59.345 61.111 0.00 0.00 0.00 4.16
226 227 2.813908 GCGTTGGCGTAGGAGTGG 60.814 66.667 0.00 0.00 40.81 4.00
227 228 2.813908 GGCGTTGGCGTAGGAGTG 60.814 66.667 0.00 0.00 41.24 3.51
228 229 4.430765 CGGCGTTGGCGTAGGAGT 62.431 66.667 0.00 0.00 46.33 3.85
248 249 3.876589 TTCAGTGTTCGGGCTCGGC 62.877 63.158 5.94 0.00 36.95 5.54
249 250 1.738099 CTTCAGTGTTCGGGCTCGG 60.738 63.158 5.94 0.00 36.95 4.63
250 251 2.383527 GCTTCAGTGTTCGGGCTCG 61.384 63.158 0.00 0.00 37.82 5.03
251 252 1.294659 CTGCTTCAGTGTTCGGGCTC 61.295 60.000 0.00 0.00 0.00 4.70
252 253 1.302033 CTGCTTCAGTGTTCGGGCT 60.302 57.895 0.00 0.00 0.00 5.19
253 254 1.598130 ACTGCTTCAGTGTTCGGGC 60.598 57.895 0.00 0.00 43.63 6.13
254 255 4.779475 ACTGCTTCAGTGTTCGGG 57.221 55.556 0.00 0.00 43.63 5.14
278 279 4.933064 CTCGGAGTCGGCATCGGC 62.933 72.222 0.00 0.00 42.03 5.54
279 280 4.933064 GCTCGGAGTCGGCATCGG 62.933 72.222 6.90 0.00 36.95 4.18
280 281 4.933064 GGCTCGGAGTCGGCATCG 62.933 72.222 6.90 0.00 35.37 3.84
281 282 4.593864 GGGCTCGGAGTCGGCATC 62.594 72.222 6.90 0.00 35.37 3.91
287 288 4.500116 GTGCTCGGGCTCGGAGTC 62.500 72.222 9.62 3.54 39.59 3.36
289 290 4.504916 CAGTGCTCGGGCTCGGAG 62.505 72.222 9.62 3.28 39.59 4.63
290 291 3.931190 TACAGTGCTCGGGCTCGGA 62.931 63.158 16.30 0.00 39.59 4.55
291 292 3.417275 CTACAGTGCTCGGGCTCGG 62.417 68.421 9.62 8.67 39.59 4.63
292 293 2.103143 CTACAGTGCTCGGGCTCG 59.897 66.667 9.62 0.00 39.59 5.03
293 294 1.384989 TAGCTACAGTGCTCGGGCTC 61.385 60.000 9.62 4.54 42.97 4.70
294 295 1.379977 TAGCTACAGTGCTCGGGCT 60.380 57.895 9.62 0.00 42.97 5.19
295 296 1.227002 GTAGCTACAGTGCTCGGGC 60.227 63.158 19.15 0.00 42.97 6.13
296 297 1.064296 CGTAGCTACAGTGCTCGGG 59.936 63.158 23.21 0.14 42.97 5.14
297 298 4.692129 CGTAGCTACAGTGCTCGG 57.308 61.111 23.21 0.87 42.97 4.63
325 326 3.573772 TTCAGTGCTCGTGCTCGGG 62.574 63.158 11.19 5.92 40.98 5.14
326 327 2.049156 TTCAGTGCTCGTGCTCGG 60.049 61.111 11.19 8.09 40.48 4.63
327 328 0.941463 AACTTCAGTGCTCGTGCTCG 60.941 55.000 11.19 0.81 40.48 5.03
328 329 0.510359 CAACTTCAGTGCTCGTGCTC 59.490 55.000 11.19 7.23 40.48 4.26
329 330 0.179073 ACAACTTCAGTGCTCGTGCT 60.179 50.000 11.19 0.00 40.48 4.40
330 331 0.041839 CACAACTTCAGTGCTCGTGC 60.042 55.000 1.71 1.71 40.20 5.34
337 338 1.564622 CGTCGGCACAACTTCAGTG 59.435 57.895 0.00 0.00 39.92 3.66
338 339 2.244651 GCGTCGGCACAACTTCAGT 61.245 57.895 0.00 0.00 39.62 3.41
339 340 2.551270 GCGTCGGCACAACTTCAG 59.449 61.111 0.00 0.00 39.62 3.02
340 341 2.970324 GGCGTCGGCACAACTTCA 60.970 61.111 14.73 0.00 42.47 3.02
341 342 4.072088 CGGCGTCGGCACAACTTC 62.072 66.667 19.59 0.00 42.47 3.01
342 343 4.595538 TCGGCGTCGGCACAACTT 62.596 61.111 19.59 0.00 42.47 2.66
376 377 4.776322 TCCATTCACGCGGCAGGG 62.776 66.667 12.47 4.77 0.00 4.45
377 378 3.197790 CTCCATTCACGCGGCAGG 61.198 66.667 12.47 4.93 0.00 4.85
378 379 3.869272 GCTCCATTCACGCGGCAG 61.869 66.667 12.47 0.00 0.00 4.85
379 380 3.974835 ATGCTCCATTCACGCGGCA 62.975 57.895 12.47 8.11 0.00 5.69
380 381 3.173390 GATGCTCCATTCACGCGGC 62.173 63.158 12.47 1.15 0.00 6.53
381 382 0.249447 TAGATGCTCCATTCACGCGG 60.249 55.000 12.47 0.00 0.00 6.46
382 383 0.855349 GTAGATGCTCCATTCACGCG 59.145 55.000 3.53 3.53 0.00 6.01
383 384 2.231215 AGTAGATGCTCCATTCACGC 57.769 50.000 0.00 0.00 0.00 5.34
419 420 2.015587 AGTACGAGCACCTACTACTGC 58.984 52.381 0.00 0.00 0.00 4.40
434 435 5.368256 AGTACACCAGTTACTTCAGTACG 57.632 43.478 0.00 0.00 36.43 3.67
460 461 1.219393 GACTGGCTCCCTGTACAGC 59.781 63.158 17.86 6.82 35.85 4.40
467 468 1.377994 CAAGCAAGACTGGCTCCCT 59.622 57.895 4.38 0.00 41.66 4.20
517 518 1.732732 GCGTATAGGATGCACGGCTAG 60.733 57.143 0.00 0.00 40.11 3.42
518 519 0.242825 GCGTATAGGATGCACGGCTA 59.757 55.000 0.00 0.00 40.11 3.93
529 530 3.380486 CGTATAGTGGACGCGTATAGG 57.620 52.381 13.97 8.03 32.89 2.57
577 581 4.007644 CTCCAGTGGACGCCTGCA 62.008 66.667 8.12 0.00 0.00 4.41
713 754 6.183360 CCGCAGAGGTAAAAACGAGATAAAAT 60.183 38.462 0.00 0.00 34.51 1.82
965 1011 1.153046 CGTCTGTTGGTGGTTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
980 1026 4.500116 GGTCTGAGGAGGCGCGTC 62.500 72.222 21.41 21.41 0.00 5.19
1017 1073 1.890894 CAACCATCTCCGTCCGTCT 59.109 57.895 0.00 0.00 0.00 4.18
1210 1273 1.535896 GCGAGGGACAGGAAAAGAAAC 59.464 52.381 0.00 0.00 0.00 2.78
1220 1286 3.592070 TCGAAGAGCGAGGGACAG 58.408 61.111 0.00 0.00 45.59 3.51
1233 1299 3.857052 AGAAGCGTCACCATTAATCGAA 58.143 40.909 1.61 0.00 0.00 3.71
1245 1315 2.605837 TAACACACCAAGAAGCGTCA 57.394 45.000 1.61 0.00 0.00 4.35
1248 1318 3.120199 CCTGATTAACACACCAAGAAGCG 60.120 47.826 0.00 0.00 0.00 4.68
1263 1333 2.777972 CGTCGCGGACCCCTGATTA 61.778 63.158 6.13 0.00 0.00 1.75
1815 1885 2.126071 GCGTCGAAGTGGCTGCTA 60.126 61.111 0.00 0.00 0.00 3.49
1947 2017 1.791103 GCGTCTCGAGATCCCTGGAG 61.791 65.000 19.90 4.39 43.86 3.86
1948 2018 1.824329 GCGTCTCGAGATCCCTGGA 60.824 63.158 19.90 0.00 0.00 3.86
2118 2188 1.127225 GTCGACTTGCACGCGTAAC 59.873 57.895 13.44 8.16 0.00 2.50
2124 2194 1.154413 GGCATTGTCGACTTGCACG 60.154 57.895 31.07 12.63 38.12 5.34
2127 2197 2.480555 CGGGCATTGTCGACTTGC 59.519 61.111 26.05 26.05 35.64 4.01
2235 2305 3.760035 TGGCGCTTCTCCGGAGAC 61.760 66.667 33.75 21.60 37.14 3.36
2265 2335 0.517316 GATCAGCGTTGTTCGGCTTT 59.483 50.000 0.00 0.00 40.26 3.51
2385 2455 3.046087 CTGGCACTGGCACTGACG 61.046 66.667 0.07 0.00 43.71 4.35
2441 2511 4.327680 AGCAGAGATTTTACCACCTTGTC 58.672 43.478 0.00 0.00 0.00 3.18
2467 2539 1.631072 GTTGCACGATCGATGTCCG 59.369 57.895 24.34 2.49 40.25 4.79
2472 2544 2.066262 AGAAAACGTTGCACGATCGAT 58.934 42.857 24.34 0.00 46.05 3.59
2473 2545 1.493772 AGAAAACGTTGCACGATCGA 58.506 45.000 24.34 0.00 46.05 3.59
2474 2546 2.294479 AAGAAAACGTTGCACGATCG 57.706 45.000 14.88 14.88 46.05 3.69
2475 2547 3.059461 TGGTAAGAAAACGTTGCACGATC 60.059 43.478 0.00 9.48 46.05 3.69
2497 2569 3.069872 TGCAATGCAAAAATGGACAGACT 59.930 39.130 5.01 0.00 34.76 3.24
2829 2920 2.126031 GCGAAGTCGGGGTCACTC 60.126 66.667 2.47 0.00 40.23 3.51
2862 2953 1.666872 CCGGTCCGACAAACAGACC 60.667 63.158 14.39 0.00 45.49 3.85
3316 3486 2.505407 TGGATTAGACATGGGAGTGTGG 59.495 50.000 0.00 0.00 31.16 4.17
3318 3488 4.927267 TTTGGATTAGACATGGGAGTGT 57.073 40.909 0.00 0.00 34.39 3.55
3471 7460 8.962679 TCATTCACTCATTCATTCATTCATTCA 58.037 29.630 0.00 0.00 0.00 2.57
3472 7461 9.797556 TTCATTCACTCATTCATTCATTCATTC 57.202 29.630 0.00 0.00 0.00 2.67
3474 7463 9.750125 CATTCATTCACTCATTCATTCATTCAT 57.250 29.630 0.00 0.00 0.00 2.57
3475 7464 8.962679 TCATTCATTCACTCATTCATTCATTCA 58.037 29.630 0.00 0.00 0.00 2.57
3537 7567 5.678583 TGCATGGGAAGAAAGAAGATCTAG 58.321 41.667 0.00 0.00 0.00 2.43
3538 7568 5.698741 TGCATGGGAAGAAAGAAGATCTA 57.301 39.130 0.00 0.00 0.00 1.98
3539 7569 4.581309 TGCATGGGAAGAAAGAAGATCT 57.419 40.909 0.00 0.00 0.00 2.75
3540 7570 4.643784 ACATGCATGGGAAGAAAGAAGATC 59.356 41.667 29.41 0.00 0.00 2.75
3541 7571 4.401519 CACATGCATGGGAAGAAAGAAGAT 59.598 41.667 29.41 1.17 31.22 2.40
3542 7572 3.760151 CACATGCATGGGAAGAAAGAAGA 59.240 43.478 29.41 0.00 31.22 2.87
3543 7573 3.675228 GCACATGCATGGGAAGAAAGAAG 60.675 47.826 32.92 1.39 41.59 2.85
3544 7574 2.231964 GCACATGCATGGGAAGAAAGAA 59.768 45.455 32.92 0.00 41.59 2.52
3545 7575 1.820519 GCACATGCATGGGAAGAAAGA 59.179 47.619 32.92 0.00 41.59 2.52
3546 7576 1.134907 GGCACATGCATGGGAAGAAAG 60.135 52.381 32.92 10.91 44.36 2.62
3547 7577 0.896923 GGCACATGCATGGGAAGAAA 59.103 50.000 32.92 0.00 44.36 2.52
3548 7578 1.314534 CGGCACATGCATGGGAAGAA 61.315 55.000 32.92 0.00 44.36 2.52
3549 7579 1.750018 CGGCACATGCATGGGAAGA 60.750 57.895 32.92 0.00 44.36 2.87
3550 7580 2.802792 CGGCACATGCATGGGAAG 59.197 61.111 32.92 20.11 44.36 3.46
3551 7581 3.451004 GCGGCACATGCATGGGAA 61.451 61.111 32.92 0.00 44.36 3.97
3552 7582 4.737177 TGCGGCACATGCATGGGA 62.737 61.111 32.92 11.93 44.36 4.37
3663 8052 3.756933 AACAGTGGCAAAATGAAGCAT 57.243 38.095 0.00 0.00 0.00 3.79
3705 8094 1.537776 CCAGAGTTGCTCATCCTAGCG 60.538 57.143 0.00 0.00 45.85 4.26
3706 8095 1.484240 ACCAGAGTTGCTCATCCTAGC 59.516 52.381 0.00 0.00 43.08 3.42
3749 8155 6.766467 GCACTTGGTAGGCATTATTAACTACT 59.234 38.462 0.00 0.00 36.81 2.57
3752 8158 4.574828 CGCACTTGGTAGGCATTATTAACT 59.425 41.667 0.00 0.00 0.00 2.24
3753 8159 4.334481 ACGCACTTGGTAGGCATTATTAAC 59.666 41.667 0.00 0.00 0.00 2.01
3754 8160 4.519213 ACGCACTTGGTAGGCATTATTAA 58.481 39.130 0.00 0.00 0.00 1.40
3755 8161 4.145365 ACGCACTTGGTAGGCATTATTA 57.855 40.909 0.00 0.00 0.00 0.98
3756 8162 2.999331 ACGCACTTGGTAGGCATTATT 58.001 42.857 0.00 0.00 0.00 1.40
3764 8170 3.249799 TGAACATGAAACGCACTTGGTAG 59.750 43.478 0.00 0.00 0.00 3.18
3767 8173 2.772568 TGAACATGAAACGCACTTGG 57.227 45.000 0.00 0.00 0.00 3.61
3782 8188 4.695217 TGACGGCCTCAAAATAATGAAC 57.305 40.909 0.00 0.00 0.00 3.18
3847 8253 8.623903 AGGCAATACATTTATATGTCAACAGTG 58.376 33.333 1.77 0.00 43.81 3.66
3848 8254 8.752005 AGGCAATACATTTATATGTCAACAGT 57.248 30.769 1.77 0.00 43.81 3.55
3850 8256 9.845740 ACTAGGCAATACATTTATATGTCAACA 57.154 29.630 1.77 0.00 43.81 3.33
3861 8267 7.201732 CCGATGAAAGAACTAGGCAATACATTT 60.202 37.037 0.00 0.00 0.00 2.32
3862 8268 6.260936 CCGATGAAAGAACTAGGCAATACATT 59.739 38.462 0.00 0.00 0.00 2.71
3863 8269 5.760253 CCGATGAAAGAACTAGGCAATACAT 59.240 40.000 0.00 0.00 0.00 2.29
3865 8271 5.357257 TCCGATGAAAGAACTAGGCAATAC 58.643 41.667 0.00 0.00 0.00 1.89
3866 8272 5.607939 TCCGATGAAAGAACTAGGCAATA 57.392 39.130 0.00 0.00 0.00 1.90
3868 8274 3.973206 TCCGATGAAAGAACTAGGCAA 57.027 42.857 0.00 0.00 0.00 4.52
3870 8276 2.603560 CGTTCCGATGAAAGAACTAGGC 59.396 50.000 0.00 0.00 40.18 3.93
3871 8277 3.187700 CCGTTCCGATGAAAGAACTAGG 58.812 50.000 0.00 0.00 40.18 3.02
3872 8278 3.846360 ACCGTTCCGATGAAAGAACTAG 58.154 45.455 0.00 0.00 40.18 2.57
3874 8280 2.833631 ACCGTTCCGATGAAAGAACT 57.166 45.000 0.00 0.00 40.18 3.01
3876 8282 4.904253 AAAAACCGTTCCGATGAAAGAA 57.096 36.364 0.00 0.00 32.46 2.52
3896 8302 5.851720 TGCTCTATCCAATGCAAACAAAAA 58.148 33.333 0.00 0.00 32.12 1.94
3897 8303 5.465532 TGCTCTATCCAATGCAAACAAAA 57.534 34.783 0.00 0.00 32.12 2.44
3898 8304 5.412640 CATGCTCTATCCAATGCAAACAAA 58.587 37.500 0.00 0.00 38.96 2.83
3899 8305 4.678574 GCATGCTCTATCCAATGCAAACAA 60.679 41.667 11.37 0.00 38.96 2.83
3900 8306 3.181484 GCATGCTCTATCCAATGCAAACA 60.181 43.478 11.37 0.00 38.96 2.83
3901 8307 3.181484 TGCATGCTCTATCCAATGCAAAC 60.181 43.478 20.33 0.00 41.32 2.93
3902 8308 3.025262 TGCATGCTCTATCCAATGCAAA 58.975 40.909 20.33 0.00 41.32 3.68
3904 8310 1.951602 GTGCATGCTCTATCCAATGCA 59.048 47.619 20.33 5.13 41.91 3.96
3905 8311 2.228059 AGTGCATGCTCTATCCAATGC 58.772 47.619 20.22 0.00 35.77 3.56
3906 8312 4.135306 AGAAGTGCATGCTCTATCCAATG 58.865 43.478 21.70 0.00 0.00 2.82
3907 8313 4.434545 AGAAGTGCATGCTCTATCCAAT 57.565 40.909 21.70 5.92 0.00 3.16
3910 8316 4.202202 ACTGTAGAAGTGCATGCTCTATCC 60.202 45.833 21.70 13.81 37.88 2.59
3911 8317 4.942852 ACTGTAGAAGTGCATGCTCTATC 58.057 43.478 21.70 18.86 37.88 2.08
3912 8318 4.403752 TGACTGTAGAAGTGCATGCTCTAT 59.596 41.667 21.70 15.63 40.07 1.98
3913 8319 3.763897 TGACTGTAGAAGTGCATGCTCTA 59.236 43.478 21.70 15.62 40.07 2.43
3914 8320 2.564504 TGACTGTAGAAGTGCATGCTCT 59.435 45.455 20.33 18.23 40.07 4.09
3915 8321 2.670414 GTGACTGTAGAAGTGCATGCTC 59.330 50.000 20.33 15.94 40.07 4.26
3917 8323 2.416747 TGTGACTGTAGAAGTGCATGC 58.583 47.619 11.82 11.82 40.07 4.06
3918 8324 3.187227 GGTTGTGACTGTAGAAGTGCATG 59.813 47.826 0.00 0.00 40.07 4.06
3919 8325 3.181455 TGGTTGTGACTGTAGAAGTGCAT 60.181 43.478 0.00 0.00 40.07 3.96
3921 8327 2.544267 GTGGTTGTGACTGTAGAAGTGC 59.456 50.000 0.00 0.00 40.07 4.40
3922 8328 4.060038 AGTGGTTGTGACTGTAGAAGTG 57.940 45.455 0.00 0.00 40.07 3.16
3923 8329 4.081087 ACAAGTGGTTGTGACTGTAGAAGT 60.081 41.667 0.00 0.00 45.58 3.01
3924 8330 4.442706 ACAAGTGGTTGTGACTGTAGAAG 58.557 43.478 0.00 0.00 45.58 2.85
3925 8331 4.481368 ACAAGTGGTTGTGACTGTAGAA 57.519 40.909 0.00 0.00 45.58 2.10
3926 8332 4.081365 TGAACAAGTGGTTGTGACTGTAGA 60.081 41.667 0.00 0.00 46.68 2.59
3928 8334 3.936453 GTGAACAAGTGGTTGTGACTGTA 59.064 43.478 0.00 0.00 46.68 2.74
3930 8336 3.009723 AGTGAACAAGTGGTTGTGACTG 58.990 45.455 0.00 0.00 46.68 3.51
3931 8337 3.055094 AGAGTGAACAAGTGGTTGTGACT 60.055 43.478 0.00 3.88 46.68 3.41
3932 8338 3.270877 AGAGTGAACAAGTGGTTGTGAC 58.729 45.455 0.00 0.00 46.68 3.67
3947 8730 1.644509 TGCAGAGGCCTAAAGAGTGA 58.355 50.000 4.42 0.00 40.13 3.41
3981 8764 5.822519 ACAAGAATTATGTGAGTGTGTGTGT 59.177 36.000 0.00 0.00 0.00 3.72
4051 8843 7.566858 AGCGAATATTTGCTTTTTAGTTGTG 57.433 32.000 22.33 0.00 45.45 3.33
4083 8875 4.136796 CGATCCTTTCCATTGCCTCATTA 58.863 43.478 0.00 0.00 0.00 1.90
4084 8876 2.954318 CGATCCTTTCCATTGCCTCATT 59.046 45.455 0.00 0.00 0.00 2.57
4085 8877 2.092212 ACGATCCTTTCCATTGCCTCAT 60.092 45.455 0.00 0.00 0.00 2.90
4086 8878 1.281867 ACGATCCTTTCCATTGCCTCA 59.718 47.619 0.00 0.00 0.00 3.86
4130 8922 5.357878 TGATGTTCCTGATCTTGTAATTGCC 59.642 40.000 0.00 0.00 0.00 4.52
4147 8939 7.816640 TGTTTTGATAGGCTTAACTGATGTTC 58.183 34.615 0.00 0.00 37.59 3.18
4224 9089 1.674359 TATACATTGGGTGCTTGGCG 58.326 50.000 0.00 0.00 0.00 5.69
4247 9112 5.304101 AAAGAATTTGTTCCACTACATGGCA 59.696 36.000 0.00 0.00 42.73 4.92
4270 9136 6.577103 TGTTTACCATGAGAATTTTGTGCAA 58.423 32.000 0.00 0.00 0.00 4.08
4387 9256 2.178912 ATGGTGGTACGTGTTCTTGG 57.821 50.000 0.00 0.00 0.00 3.61
4397 9266 1.539827 GTGGCTTGTGAATGGTGGTAC 59.460 52.381 0.00 0.00 0.00 3.34
4399 9268 0.827507 GGTGGCTTGTGAATGGTGGT 60.828 55.000 0.00 0.00 0.00 4.16
4433 9302 9.527157 TTTACTTCAGTTATGATGGGAAATTCA 57.473 29.630 0.00 0.00 35.44 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.