Multiple sequence alignment - TraesCS7B01G355600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G355600 chr7B 100.000 2151 0 0 774 2924 615162050 615164200 0.000000e+00 3973.0
1 TraesCS7B01G355600 chr7B 96.779 1366 40 3 774 2137 52911289 52909926 0.000000e+00 2276.0
2 TraesCS7B01G355600 chr7B 100.000 673 0 0 1 673 615161277 615161949 0.000000e+00 1243.0
3 TraesCS7B01G355600 chr7B 94.186 602 34 1 2315 2915 52909614 52909013 0.000000e+00 917.0
4 TraesCS7B01G355600 chr7B 91.506 259 10 3 415 673 52911525 52911279 2.160000e-91 346.0
5 TraesCS7B01G355600 chr7B 93.578 218 14 0 2137 2354 52909831 52909614 2.810000e-85 326.0
6 TraesCS7B01G355600 chr7B 96.000 50 2 0 340 389 615161557 615161606 6.720000e-12 82.4
7 TraesCS7B01G355600 chr7B 96.000 50 2 0 281 330 615161616 615161665 6.720000e-12 82.4
8 TraesCS7B01G355600 chr7D 96.713 1369 32 5 774 2137 98293553 98292193 0.000000e+00 2266.0
9 TraesCS7B01G355600 chr7D 93.709 604 37 1 2315 2917 98291881 98291278 0.000000e+00 904.0
10 TraesCS7B01G355600 chr7D 94.595 259 8 2 415 673 98293795 98293543 2.110000e-106 396.0
11 TraesCS7B01G355600 chr7D 94.037 218 13 0 2137 2354 98292098 98291881 6.040000e-87 331.0
12 TraesCS7B01G355600 chr7D 93.750 48 2 1 353 399 98293890 98293843 1.450000e-08 71.3
13 TraesCS7B01G355600 chr1A 96.835 158 5 0 1 158 590234396 590234553 6.210000e-67 265.0
14 TraesCS7B01G355600 chr1D 91.083 157 14 0 2 158 294838 294994 2.280000e-51 213.0
15 TraesCS7B01G355600 chr2B 89.172 157 17 0 2 158 91480946 91481102 2.300000e-46 196.0
16 TraesCS7B01G355600 chr3A 89.103 156 17 0 3 158 617431592 617431437 8.270000e-46 195.0
17 TraesCS7B01G355600 chr7A 88.535 157 18 0 2 158 509115426 509115270 1.070000e-44 191.0
18 TraesCS7B01G355600 chr4B 88.535 157 18 0 2 158 4561800 4561956 1.070000e-44 191.0
19 TraesCS7B01G355600 chr4A 85.897 156 22 0 2 157 707439964 707440119 1.800000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G355600 chr7B 615161277 615164200 2923 False 1345.20 3973 98.00000 1 2924 4 chr7B.!!$F1 2923
1 TraesCS7B01G355600 chr7B 52909013 52911525 2512 True 966.25 2276 94.01225 415 2915 4 chr7B.!!$R1 2500
2 TraesCS7B01G355600 chr7D 98291278 98293890 2612 True 793.66 2266 94.56080 353 2917 5 chr7D.!!$R1 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.038166 GCACCCTTTGATCCCAGTCA 59.962 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2112 0.389391 ACTGGACCCGATGATAAGCG 59.611 55.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.357996 GCTCAAGCAGGAATTCAATAAGC 58.642 43.478 7.93 3.50 41.59 3.09
23 24 4.097589 GCTCAAGCAGGAATTCAATAAGCT 59.902 41.667 7.93 5.74 41.59 3.74
24 25 5.732810 GCTCAAGCAGGAATTCAATAAGCTC 60.733 44.000 7.93 0.00 41.59 4.09
25 26 5.503927 TCAAGCAGGAATTCAATAAGCTCT 58.496 37.500 7.93 0.00 0.00 4.09
26 27 5.356190 TCAAGCAGGAATTCAATAAGCTCTG 59.644 40.000 7.93 3.95 0.00 3.35
27 28 5.108187 AGCAGGAATTCAATAAGCTCTGA 57.892 39.130 7.93 0.00 0.00 3.27
28 29 5.124645 AGCAGGAATTCAATAAGCTCTGAG 58.875 41.667 7.93 0.00 0.00 3.35
29 30 5.104610 AGCAGGAATTCAATAAGCTCTGAGA 60.105 40.000 9.28 0.00 0.00 3.27
30 31 5.764192 GCAGGAATTCAATAAGCTCTGAGAT 59.236 40.000 9.28 0.00 0.00 2.75
31 32 6.073112 GCAGGAATTCAATAAGCTCTGAGATC 60.073 42.308 9.28 0.00 0.00 2.75
32 33 7.218614 CAGGAATTCAATAAGCTCTGAGATCT 58.781 38.462 9.28 0.00 0.00 2.75
33 34 7.385752 CAGGAATTCAATAAGCTCTGAGATCTC 59.614 40.741 16.21 16.21 0.00 2.75
34 35 6.650390 GGAATTCAATAAGCTCTGAGATCTCC 59.350 42.308 20.03 4.47 0.00 3.71
35 36 6.999705 ATTCAATAAGCTCTGAGATCTCCT 57.000 37.500 20.03 6.83 0.00 3.69
36 37 6.805016 TTCAATAAGCTCTGAGATCTCCTT 57.195 37.500 20.03 16.56 0.00 3.36
37 38 6.403866 TCAATAAGCTCTGAGATCTCCTTC 57.596 41.667 20.03 6.75 0.00 3.46
38 39 5.304101 TCAATAAGCTCTGAGATCTCCTTCC 59.696 44.000 20.03 6.38 0.00 3.46
39 40 3.403228 AAGCTCTGAGATCTCCTTCCT 57.597 47.619 20.03 8.49 0.00 3.36
40 41 2.949447 AGCTCTGAGATCTCCTTCCTC 58.051 52.381 20.03 4.74 0.00 3.71
41 42 2.515429 AGCTCTGAGATCTCCTTCCTCT 59.485 50.000 20.03 6.84 0.00 3.69
42 43 3.052642 AGCTCTGAGATCTCCTTCCTCTT 60.053 47.826 20.03 0.00 0.00 2.85
43 44 3.319122 GCTCTGAGATCTCCTTCCTCTTC 59.681 52.174 20.03 0.00 0.00 2.87
44 45 4.796606 CTCTGAGATCTCCTTCCTCTTCT 58.203 47.826 20.03 0.00 0.00 2.85
45 46 4.792068 TCTGAGATCTCCTTCCTCTTCTC 58.208 47.826 20.03 0.00 0.00 2.87
46 47 3.891366 CTGAGATCTCCTTCCTCTTCTCC 59.109 52.174 20.03 0.00 30.88 3.71
47 48 3.531397 TGAGATCTCCTTCCTCTTCTCCT 59.469 47.826 20.03 0.00 30.88 3.69
48 49 4.145052 GAGATCTCCTTCCTCTTCTCCTC 58.855 52.174 12.00 0.00 0.00 3.71
49 50 3.531397 AGATCTCCTTCCTCTTCTCCTCA 59.469 47.826 0.00 0.00 0.00 3.86
50 51 3.094484 TCTCCTTCCTCTTCTCCTCAC 57.906 52.381 0.00 0.00 0.00 3.51
51 52 2.652348 TCTCCTTCCTCTTCTCCTCACT 59.348 50.000 0.00 0.00 0.00 3.41
52 53 2.760092 CTCCTTCCTCTTCTCCTCACTG 59.240 54.545 0.00 0.00 0.00 3.66
53 54 1.830477 CCTTCCTCTTCTCCTCACTGG 59.170 57.143 0.00 0.00 37.10 4.00
54 55 1.206849 CTTCCTCTTCTCCTCACTGGC 59.793 57.143 0.00 0.00 35.26 4.85
55 56 0.616111 TCCTCTTCTCCTCACTGGCC 60.616 60.000 0.00 0.00 35.26 5.36
56 57 0.617249 CCTCTTCTCCTCACTGGCCT 60.617 60.000 3.32 0.00 35.26 5.19
57 58 0.823460 CTCTTCTCCTCACTGGCCTC 59.177 60.000 3.32 0.00 35.26 4.70
58 59 0.115152 TCTTCTCCTCACTGGCCTCA 59.885 55.000 3.32 0.00 35.26 3.86
59 60 1.202330 CTTCTCCTCACTGGCCTCAT 58.798 55.000 3.32 0.00 35.26 2.90
60 61 1.558756 CTTCTCCTCACTGGCCTCATT 59.441 52.381 3.32 0.00 35.26 2.57
61 62 1.198713 TCTCCTCACTGGCCTCATTC 58.801 55.000 3.32 0.00 35.26 2.67
62 63 0.907486 CTCCTCACTGGCCTCATTCA 59.093 55.000 3.32 0.00 35.26 2.57
63 64 1.489649 CTCCTCACTGGCCTCATTCAT 59.510 52.381 3.32 0.00 35.26 2.57
64 65 1.918262 TCCTCACTGGCCTCATTCATT 59.082 47.619 3.32 0.00 35.26 2.57
65 66 2.022195 CCTCACTGGCCTCATTCATTG 58.978 52.381 3.32 0.00 0.00 2.82
66 67 2.022195 CTCACTGGCCTCATTCATTGG 58.978 52.381 3.32 0.00 0.00 3.16
67 68 1.108776 CACTGGCCTCATTCATTGGG 58.891 55.000 3.32 0.00 0.00 4.12
68 69 0.685458 ACTGGCCTCATTCATTGGGC 60.685 55.000 3.32 0.00 45.24 5.36
69 70 4.360643 GGCCTCATTCATTGGGCA 57.639 55.556 0.00 0.00 44.53 5.36
70 71 1.818555 GGCCTCATTCATTGGGCAC 59.181 57.895 0.00 0.00 44.53 5.01
71 72 1.434696 GCCTCATTCATTGGGCACG 59.565 57.895 0.00 0.00 39.87 5.34
72 73 1.315257 GCCTCATTCATTGGGCACGT 61.315 55.000 0.00 0.00 39.87 4.49
73 74 0.734889 CCTCATTCATTGGGCACGTC 59.265 55.000 0.00 0.00 0.00 4.34
74 75 1.452110 CTCATTCATTGGGCACGTCA 58.548 50.000 0.00 0.00 0.00 4.35
75 76 2.019249 CTCATTCATTGGGCACGTCAT 58.981 47.619 0.00 0.00 0.00 3.06
76 77 3.205338 CTCATTCATTGGGCACGTCATA 58.795 45.455 0.00 0.00 0.00 2.15
77 78 3.615155 TCATTCATTGGGCACGTCATAA 58.385 40.909 0.00 0.00 0.00 1.90
78 79 3.376859 TCATTCATTGGGCACGTCATAAC 59.623 43.478 0.00 0.00 0.00 1.89
79 80 2.779755 TCATTGGGCACGTCATAACT 57.220 45.000 0.00 0.00 0.00 2.24
80 81 3.066291 TCATTGGGCACGTCATAACTT 57.934 42.857 0.00 0.00 0.00 2.66
81 82 3.417101 TCATTGGGCACGTCATAACTTT 58.583 40.909 0.00 0.00 0.00 2.66
82 83 3.438781 TCATTGGGCACGTCATAACTTTC 59.561 43.478 0.00 0.00 0.00 2.62
83 84 2.851263 TGGGCACGTCATAACTTTCT 57.149 45.000 0.00 0.00 0.00 2.52
84 85 3.134574 TGGGCACGTCATAACTTTCTT 57.865 42.857 0.00 0.00 0.00 2.52
85 86 4.274602 TGGGCACGTCATAACTTTCTTA 57.725 40.909 0.00 0.00 0.00 2.10
86 87 4.643463 TGGGCACGTCATAACTTTCTTAA 58.357 39.130 0.00 0.00 0.00 1.85
87 88 4.693566 TGGGCACGTCATAACTTTCTTAAG 59.306 41.667 0.00 0.00 37.40 1.85
88 89 4.933400 GGGCACGTCATAACTTTCTTAAGA 59.067 41.667 0.00 0.00 35.30 2.10
89 90 5.585047 GGGCACGTCATAACTTTCTTAAGAT 59.415 40.000 5.89 0.00 35.30 2.40
90 91 6.238130 GGGCACGTCATAACTTTCTTAAGATC 60.238 42.308 5.89 0.00 35.30 2.75
91 92 6.535508 GGCACGTCATAACTTTCTTAAGATCT 59.464 38.462 5.89 0.00 35.30 2.75
92 93 7.254151 GGCACGTCATAACTTTCTTAAGATCTC 60.254 40.741 5.89 0.00 35.30 2.75
93 94 7.489757 GCACGTCATAACTTTCTTAAGATCTCT 59.510 37.037 5.89 0.00 35.30 3.10
94 95 9.360093 CACGTCATAACTTTCTTAAGATCTCTT 57.640 33.333 5.89 0.00 39.85 2.85
95 96 9.930693 ACGTCATAACTTTCTTAAGATCTCTTT 57.069 29.630 5.89 0.00 37.40 2.52
97 98 9.980780 GTCATAACTTTCTTAAGATCTCTTTGC 57.019 33.333 5.89 0.00 37.40 3.68
98 99 8.873830 TCATAACTTTCTTAAGATCTCTTTGCG 58.126 33.333 5.89 0.00 37.40 4.85
99 100 5.538067 ACTTTCTTAAGATCTCTTTGCGC 57.462 39.130 5.89 0.00 37.40 6.09
100 101 5.241662 ACTTTCTTAAGATCTCTTTGCGCT 58.758 37.500 9.73 0.00 37.40 5.92
101 102 5.703130 ACTTTCTTAAGATCTCTTTGCGCTT 59.297 36.000 9.73 0.00 37.40 4.68
102 103 6.205658 ACTTTCTTAAGATCTCTTTGCGCTTT 59.794 34.615 9.73 0.00 37.40 3.51
103 104 5.786401 TCTTAAGATCTCTTTGCGCTTTC 57.214 39.130 9.73 0.00 37.40 2.62
104 105 4.631813 TCTTAAGATCTCTTTGCGCTTTCC 59.368 41.667 9.73 0.00 37.40 3.13
105 106 1.363744 AGATCTCTTTGCGCTTTCCG 58.636 50.000 9.73 0.00 40.75 4.30
106 107 1.066858 AGATCTCTTTGCGCTTTCCGA 60.067 47.619 9.73 0.00 40.02 4.55
107 108 1.732259 GATCTCTTTGCGCTTTCCGAA 59.268 47.619 9.73 0.00 40.02 4.30
108 109 1.148310 TCTCTTTGCGCTTTCCGAAG 58.852 50.000 9.73 3.61 40.02 3.79
119 120 3.820777 CTTTCCGAAGCCTCTTCTTTG 57.179 47.619 5.22 0.00 0.00 2.77
120 121 2.185004 TTCCGAAGCCTCTTCTTTGG 57.815 50.000 3.88 3.88 45.14 3.28
121 122 1.056660 TCCGAAGCCTCTTCTTTGGT 58.943 50.000 9.03 0.00 44.45 3.67
122 123 1.420138 TCCGAAGCCTCTTCTTTGGTT 59.580 47.619 9.03 0.00 44.45 3.67
123 124 2.158667 TCCGAAGCCTCTTCTTTGGTTT 60.159 45.455 9.03 0.00 44.45 3.27
124 125 2.226674 CCGAAGCCTCTTCTTTGGTTTC 59.773 50.000 5.22 0.00 40.95 2.78
125 126 3.142174 CGAAGCCTCTTCTTTGGTTTCT 58.858 45.455 0.00 0.00 40.07 2.52
126 127 3.565902 CGAAGCCTCTTCTTTGGTTTCTT 59.434 43.478 0.00 0.00 40.07 2.52
127 128 4.319839 CGAAGCCTCTTCTTTGGTTTCTTC 60.320 45.833 0.00 0.00 40.07 2.87
128 129 4.170468 AGCCTCTTCTTTGGTTTCTTCA 57.830 40.909 0.00 0.00 0.00 3.02
129 130 4.140536 AGCCTCTTCTTTGGTTTCTTCAG 58.859 43.478 0.00 0.00 0.00 3.02
130 131 3.304996 GCCTCTTCTTTGGTTTCTTCAGC 60.305 47.826 0.00 0.00 0.00 4.26
131 132 3.885297 CCTCTTCTTTGGTTTCTTCAGCA 59.115 43.478 0.00 0.00 0.00 4.41
132 133 4.261363 CCTCTTCTTTGGTTTCTTCAGCAC 60.261 45.833 0.00 0.00 0.00 4.40
133 134 3.632145 TCTTCTTTGGTTTCTTCAGCACC 59.368 43.478 0.00 0.00 0.00 5.01
134 135 2.306847 TCTTTGGTTTCTTCAGCACCC 58.693 47.619 0.00 0.00 0.00 4.61
135 136 2.091885 TCTTTGGTTTCTTCAGCACCCT 60.092 45.455 0.00 0.00 0.00 4.34
136 137 2.452600 TTGGTTTCTTCAGCACCCTT 57.547 45.000 0.00 0.00 0.00 3.95
137 138 2.452600 TGGTTTCTTCAGCACCCTTT 57.547 45.000 0.00 0.00 0.00 3.11
138 139 2.031120 TGGTTTCTTCAGCACCCTTTG 58.969 47.619 0.00 0.00 0.00 2.77
139 140 2.306847 GGTTTCTTCAGCACCCTTTGA 58.693 47.619 0.00 0.00 0.00 2.69
140 141 2.893489 GGTTTCTTCAGCACCCTTTGAT 59.107 45.455 0.00 0.00 0.00 2.57
141 142 3.057245 GGTTTCTTCAGCACCCTTTGATC 60.057 47.826 0.00 0.00 0.00 2.92
142 143 2.496899 TCTTCAGCACCCTTTGATCC 57.503 50.000 0.00 0.00 0.00 3.36
143 144 1.004745 TCTTCAGCACCCTTTGATCCC 59.995 52.381 0.00 0.00 0.00 3.85
144 145 0.776810 TTCAGCACCCTTTGATCCCA 59.223 50.000 0.00 0.00 0.00 4.37
145 146 0.329261 TCAGCACCCTTTGATCCCAG 59.671 55.000 0.00 0.00 0.00 4.45
146 147 0.038744 CAGCACCCTTTGATCCCAGT 59.961 55.000 0.00 0.00 0.00 4.00
147 148 0.329596 AGCACCCTTTGATCCCAGTC 59.670 55.000 0.00 0.00 0.00 3.51
148 149 0.038166 GCACCCTTTGATCCCAGTCA 59.962 55.000 0.00 0.00 0.00 3.41
149 150 1.341383 GCACCCTTTGATCCCAGTCAT 60.341 52.381 0.00 0.00 0.00 3.06
150 151 2.372264 CACCCTTTGATCCCAGTCATG 58.628 52.381 0.00 0.00 0.00 3.07
151 152 2.025981 CACCCTTTGATCCCAGTCATGA 60.026 50.000 0.00 0.00 0.00 3.07
152 153 2.649312 ACCCTTTGATCCCAGTCATGAA 59.351 45.455 0.00 0.00 0.00 2.57
153 154 3.075882 ACCCTTTGATCCCAGTCATGAAA 59.924 43.478 0.00 0.00 0.00 2.69
154 155 3.445096 CCCTTTGATCCCAGTCATGAAAC 59.555 47.826 0.00 0.00 0.00 2.78
155 156 3.127548 CCTTTGATCCCAGTCATGAAACG 59.872 47.826 0.00 0.00 0.00 3.60
156 157 3.694043 TTGATCCCAGTCATGAAACGA 57.306 42.857 0.00 0.00 0.00 3.85
157 158 3.251479 TGATCCCAGTCATGAAACGAG 57.749 47.619 0.00 0.00 0.00 4.18
158 159 2.831526 TGATCCCAGTCATGAAACGAGA 59.168 45.455 0.00 0.00 0.00 4.04
159 160 2.743636 TCCCAGTCATGAAACGAGAC 57.256 50.000 0.00 0.00 0.00 3.36
160 161 2.248248 TCCCAGTCATGAAACGAGACT 58.752 47.619 0.00 0.00 42.97 3.24
164 165 3.032017 AGTCATGAAACGAGACTGTGG 57.968 47.619 0.00 0.00 40.83 4.17
165 166 1.461127 GTCATGAAACGAGACTGTGGC 59.539 52.381 0.00 0.00 0.00 5.01
166 167 0.798776 CATGAAACGAGACTGTGGCC 59.201 55.000 0.00 0.00 0.00 5.36
167 168 0.687354 ATGAAACGAGACTGTGGCCT 59.313 50.000 3.32 0.00 0.00 5.19
168 169 0.468226 TGAAACGAGACTGTGGCCTT 59.532 50.000 3.32 0.00 0.00 4.35
169 170 1.689813 TGAAACGAGACTGTGGCCTTA 59.310 47.619 3.32 0.00 0.00 2.69
170 171 2.103432 TGAAACGAGACTGTGGCCTTAA 59.897 45.455 3.32 0.00 0.00 1.85
171 172 2.922740 AACGAGACTGTGGCCTTAAA 57.077 45.000 3.32 0.00 0.00 1.52
172 173 3.418684 AACGAGACTGTGGCCTTAAAT 57.581 42.857 3.32 0.00 0.00 1.40
173 174 2.699954 ACGAGACTGTGGCCTTAAATG 58.300 47.619 3.32 0.00 0.00 2.32
174 175 1.398390 CGAGACTGTGGCCTTAAATGC 59.602 52.381 3.32 0.00 0.00 3.56
175 176 2.436417 GAGACTGTGGCCTTAAATGCA 58.564 47.619 3.32 0.00 0.00 3.96
176 177 2.162408 GAGACTGTGGCCTTAAATGCAC 59.838 50.000 3.32 0.00 0.00 4.57
177 178 1.202348 GACTGTGGCCTTAAATGCACC 59.798 52.381 3.32 0.00 0.00 5.01
178 179 1.203050 ACTGTGGCCTTAAATGCACCT 60.203 47.619 3.32 0.00 0.00 4.00
179 180 2.041081 ACTGTGGCCTTAAATGCACCTA 59.959 45.455 3.32 0.00 0.00 3.08
180 181 2.684881 CTGTGGCCTTAAATGCACCTAG 59.315 50.000 3.32 0.00 0.00 3.02
181 182 2.024414 GTGGCCTTAAATGCACCTAGG 58.976 52.381 7.41 7.41 0.00 3.02
183 184 1.032794 GCCTTAAATGCACCTAGGCC 58.967 55.000 9.30 0.00 44.38 5.19
184 185 1.308998 CCTTAAATGCACCTAGGCCG 58.691 55.000 9.30 0.78 0.00 6.13
185 186 1.308998 CTTAAATGCACCTAGGCCGG 58.691 55.000 9.30 0.00 0.00 6.13
186 187 0.621609 TTAAATGCACCTAGGCCGGT 59.378 50.000 9.30 0.00 37.93 5.28
187 188 0.179468 TAAATGCACCTAGGCCGGTC 59.821 55.000 9.30 0.00 34.29 4.79
188 189 2.552231 AAATGCACCTAGGCCGGTCC 62.552 60.000 9.30 4.26 34.29 4.46
190 191 3.480133 GCACCTAGGCCGGTCCAT 61.480 66.667 9.30 0.00 34.29 3.41
191 192 2.822399 CACCTAGGCCGGTCCATC 59.178 66.667 9.30 0.00 34.29 3.51
192 193 1.762460 CACCTAGGCCGGTCCATCT 60.762 63.158 9.30 3.72 34.29 2.90
193 194 1.457831 ACCTAGGCCGGTCCATCTC 60.458 63.158 9.30 0.00 37.29 2.75
194 195 2.565645 CCTAGGCCGGTCCATCTCG 61.566 68.421 15.92 1.39 37.29 4.04
195 196 3.214250 CTAGGCCGGTCCATCTCGC 62.214 68.421 15.92 0.00 37.29 5.03
196 197 3.733507 TAGGCCGGTCCATCTCGCT 62.734 63.158 15.92 0.00 37.29 4.93
197 198 4.593864 GGCCGGTCCATCTCGCTC 62.594 72.222 1.90 0.00 34.01 5.03
198 199 3.532155 GCCGGTCCATCTCGCTCT 61.532 66.667 1.90 0.00 0.00 4.09
199 200 2.415010 CCGGTCCATCTCGCTCTG 59.585 66.667 0.00 0.00 0.00 3.35
200 201 2.279120 CGGTCCATCTCGCTCTGC 60.279 66.667 0.00 0.00 0.00 4.26
201 202 2.107953 GGTCCATCTCGCTCTGCC 59.892 66.667 0.00 0.00 0.00 4.85
202 203 2.279120 GTCCATCTCGCTCTGCCG 60.279 66.667 0.00 0.00 0.00 5.69
203 204 4.212913 TCCATCTCGCTCTGCCGC 62.213 66.667 0.00 0.00 0.00 6.53
218 219 3.449349 CGCGAGGCTTCCCTAGAT 58.551 61.111 0.00 0.00 43.12 1.98
219 220 1.287503 CGCGAGGCTTCCCTAGATC 59.712 63.158 0.00 0.00 43.12 2.75
220 221 1.175983 CGCGAGGCTTCCCTAGATCT 61.176 60.000 0.00 0.00 43.12 2.75
221 222 0.601057 GCGAGGCTTCCCTAGATCTC 59.399 60.000 0.00 0.00 43.12 2.75
222 223 0.878416 CGAGGCTTCCCTAGATCTCG 59.122 60.000 0.00 0.00 43.12 4.04
223 224 0.601057 GAGGCTTCCCTAGATCTCGC 59.399 60.000 0.00 0.00 43.12 5.03
224 225 0.187361 AGGCTTCCCTAGATCTCGCT 59.813 55.000 0.00 0.00 40.58 4.93
225 226 1.425831 AGGCTTCCCTAGATCTCGCTA 59.574 52.381 0.00 0.00 40.58 4.26
226 227 2.042433 AGGCTTCCCTAGATCTCGCTAT 59.958 50.000 0.00 0.00 40.58 2.97
227 228 3.267291 AGGCTTCCCTAGATCTCGCTATA 59.733 47.826 0.00 0.00 40.58 1.31
228 229 4.017808 GGCTTCCCTAGATCTCGCTATAA 58.982 47.826 0.00 0.00 0.00 0.98
229 230 4.097286 GGCTTCCCTAGATCTCGCTATAAG 59.903 50.000 0.00 0.00 0.00 1.73
230 231 4.439563 GCTTCCCTAGATCTCGCTATAAGC 60.440 50.000 0.00 5.18 38.02 3.09
253 254 2.181021 CCGCGGCGGTATAGGATC 59.819 66.667 32.14 0.00 42.73 3.36
254 255 2.181021 CGCGGCGGTATAGGATCC 59.819 66.667 15.84 2.48 0.00 3.36
255 256 2.341101 CGCGGCGGTATAGGATCCT 61.341 63.158 20.48 20.48 0.00 3.24
256 257 1.511768 GCGGCGGTATAGGATCCTC 59.488 63.158 20.22 3.58 0.00 3.71
257 258 1.801332 CGGCGGTATAGGATCCTCG 59.199 63.158 20.22 16.82 0.00 4.63
258 259 1.511768 GGCGGTATAGGATCCTCGC 59.488 63.158 28.43 28.43 42.02 5.03
259 260 0.966370 GGCGGTATAGGATCCTCGCT 60.966 60.000 32.20 17.42 42.33 4.93
260 261 0.452585 GCGGTATAGGATCCTCGCTC 59.547 60.000 28.81 14.98 40.00 5.03
261 262 1.951424 GCGGTATAGGATCCTCGCTCT 60.951 57.143 28.81 10.82 40.00 4.09
262 263 2.680221 GCGGTATAGGATCCTCGCTCTA 60.680 54.545 28.81 9.83 40.00 2.43
263 264 3.199677 CGGTATAGGATCCTCGCTCTAG 58.800 54.545 20.22 1.28 0.00 2.43
264 265 2.946990 GGTATAGGATCCTCGCTCTAGC 59.053 54.545 20.22 9.22 37.78 3.42
265 266 2.889170 ATAGGATCCTCGCTCTAGCA 57.111 50.000 20.22 0.00 42.21 3.49
266 267 2.192664 TAGGATCCTCGCTCTAGCAG 57.807 55.000 20.22 0.00 42.21 4.24
267 268 1.178534 AGGATCCTCGCTCTAGCAGC 61.179 60.000 9.02 4.62 45.85 5.25
268 269 1.288752 GATCCTCGCTCTAGCAGCC 59.711 63.158 2.44 0.00 46.74 4.85
269 270 1.456518 ATCCTCGCTCTAGCAGCCA 60.457 57.895 2.44 0.00 46.74 4.75
270 271 0.831288 ATCCTCGCTCTAGCAGCCAT 60.831 55.000 2.44 0.00 46.74 4.40
271 272 1.006337 CCTCGCTCTAGCAGCCATC 60.006 63.158 2.44 0.00 46.74 3.51
272 273 1.006337 CTCGCTCTAGCAGCCATCC 60.006 63.158 2.44 0.00 46.74 3.51
273 274 1.742324 CTCGCTCTAGCAGCCATCCA 61.742 60.000 2.44 0.00 46.74 3.41
274 275 1.144716 CGCTCTAGCAGCCATCCAA 59.855 57.895 2.44 0.00 46.74 3.53
275 276 0.879400 CGCTCTAGCAGCCATCCAAG 60.879 60.000 2.44 0.00 46.74 3.61
276 277 0.179936 GCTCTAGCAGCCATCCAAGT 59.820 55.000 0.00 0.00 43.17 3.16
277 278 1.809651 GCTCTAGCAGCCATCCAAGTC 60.810 57.143 0.00 0.00 43.17 3.01
278 279 0.461548 TCTAGCAGCCATCCAAGTCG 59.538 55.000 0.00 0.00 0.00 4.18
279 280 0.461548 CTAGCAGCCATCCAAGTCGA 59.538 55.000 0.00 0.00 0.00 4.20
280 281 0.461548 TAGCAGCCATCCAAGTCGAG 59.538 55.000 0.00 0.00 0.00 4.04
281 282 2.467826 GCAGCCATCCAAGTCGAGC 61.468 63.158 0.00 0.00 0.00 5.03
282 283 1.220206 CAGCCATCCAAGTCGAGCT 59.780 57.895 0.00 0.00 0.00 4.09
283 284 0.809241 CAGCCATCCAAGTCGAGCTC 60.809 60.000 2.73 2.73 0.00 4.09
284 285 1.219124 GCCATCCAAGTCGAGCTCA 59.781 57.895 15.40 0.00 0.00 4.26
285 286 0.391661 GCCATCCAAGTCGAGCTCAA 60.392 55.000 15.40 0.00 0.00 3.02
286 287 1.363744 CCATCCAAGTCGAGCTCAAC 58.636 55.000 15.40 5.40 0.00 3.18
287 288 1.363744 CATCCAAGTCGAGCTCAACC 58.636 55.000 15.40 0.00 0.00 3.77
288 289 0.250513 ATCCAAGTCGAGCTCAACCC 59.749 55.000 15.40 0.00 0.00 4.11
289 290 1.118965 TCCAAGTCGAGCTCAACCCA 61.119 55.000 15.40 0.00 0.00 4.51
290 291 0.671781 CCAAGTCGAGCTCAACCCAG 60.672 60.000 15.40 0.00 0.00 4.45
291 292 0.318441 CAAGTCGAGCTCAACCCAGA 59.682 55.000 15.40 0.00 0.00 3.86
292 293 0.318762 AAGTCGAGCTCAACCCAGAC 59.681 55.000 15.40 11.47 0.00 3.51
293 294 0.540830 AGTCGAGCTCAACCCAGACT 60.541 55.000 15.40 13.58 34.54 3.24
294 295 0.109039 GTCGAGCTCAACCCAGACTC 60.109 60.000 15.40 0.00 0.00 3.36
295 296 0.539669 TCGAGCTCAACCCAGACTCA 60.540 55.000 15.40 0.00 0.00 3.41
296 297 0.318441 CGAGCTCAACCCAGACTCAA 59.682 55.000 15.40 0.00 0.00 3.02
297 298 1.802069 GAGCTCAACCCAGACTCAAC 58.198 55.000 9.40 0.00 0.00 3.18
298 299 0.398318 AGCTCAACCCAGACTCAACC 59.602 55.000 0.00 0.00 0.00 3.77
299 300 0.951040 GCTCAACCCAGACTCAACCG 60.951 60.000 0.00 0.00 0.00 4.44
300 301 0.679505 CTCAACCCAGACTCAACCGA 59.320 55.000 0.00 0.00 0.00 4.69
301 302 0.679505 TCAACCCAGACTCAACCGAG 59.320 55.000 0.00 0.00 45.49 4.63
302 303 0.951040 CAACCCAGACTCAACCGAGC 60.951 60.000 0.00 0.00 43.66 5.03
303 304 2.113243 AACCCAGACTCAACCGAGCC 62.113 60.000 0.00 0.00 43.66 4.70
304 305 2.125912 CCAGACTCAACCGAGCCG 60.126 66.667 0.00 0.00 43.66 5.52
305 306 2.651361 CAGACTCAACCGAGCCGT 59.349 61.111 0.00 0.00 43.66 5.68
306 307 1.444553 CAGACTCAACCGAGCCGTC 60.445 63.158 0.00 0.00 43.66 4.79
307 308 2.126031 GACTCAACCGAGCCGTCC 60.126 66.667 0.00 0.00 43.66 4.79
308 309 3.966026 GACTCAACCGAGCCGTCCG 62.966 68.421 0.00 0.00 43.66 4.79
309 310 3.744719 CTCAACCGAGCCGTCCGA 61.745 66.667 0.00 0.00 31.00 4.55
310 311 3.685214 CTCAACCGAGCCGTCCGAG 62.685 68.421 0.00 0.00 31.00 4.63
311 312 4.052229 CAACCGAGCCGTCCGAGT 62.052 66.667 0.00 0.00 0.00 4.18
312 313 3.745803 AACCGAGCCGTCCGAGTC 61.746 66.667 0.00 0.00 0.00 3.36
315 316 4.225340 CGAGCCGTCCGAGTCGAG 62.225 72.222 15.64 4.27 34.28 4.04
316 317 4.539881 GAGCCGTCCGAGTCGAGC 62.540 72.222 15.64 11.12 0.00 5.03
318 319 4.539881 GCCGTCCGAGTCGAGCTC 62.540 72.222 15.64 2.73 40.77 4.09
319 320 3.125573 CCGTCCGAGTCGAGCTCA 61.126 66.667 15.64 0.00 44.33 4.26
320 321 2.401592 CGTCCGAGTCGAGCTCAG 59.598 66.667 15.64 6.88 44.33 3.35
321 322 2.392181 CGTCCGAGTCGAGCTCAGT 61.392 63.158 15.64 3.86 44.33 3.41
322 323 1.426223 GTCCGAGTCGAGCTCAGTC 59.574 63.158 15.64 11.86 44.33 3.51
323 324 1.745864 TCCGAGTCGAGCTCAGTCC 60.746 63.158 15.64 0.00 44.33 3.85
324 325 2.041115 CCGAGTCGAGCTCAGTCCA 61.041 63.158 15.64 0.00 44.33 4.02
325 326 1.587043 CCGAGTCGAGCTCAGTCCAA 61.587 60.000 15.64 0.00 44.33 3.53
326 327 0.241213 CGAGTCGAGCTCAGTCCAAA 59.759 55.000 15.40 0.00 44.33 3.28
327 328 1.335964 CGAGTCGAGCTCAGTCCAAAA 60.336 52.381 15.40 0.00 44.33 2.44
328 329 2.062519 GAGTCGAGCTCAGTCCAAAAC 58.937 52.381 15.40 0.35 43.58 2.43
329 330 1.689273 AGTCGAGCTCAGTCCAAAACT 59.311 47.619 15.40 2.57 39.44 2.66
330 331 2.891580 AGTCGAGCTCAGTCCAAAACTA 59.108 45.455 15.40 0.00 36.07 2.24
331 332 3.321111 AGTCGAGCTCAGTCCAAAACTAA 59.679 43.478 15.40 0.00 36.07 2.24
332 333 4.021016 AGTCGAGCTCAGTCCAAAACTAAT 60.021 41.667 15.40 0.00 36.07 1.73
333 334 4.092091 GTCGAGCTCAGTCCAAAACTAATG 59.908 45.833 15.40 0.00 36.07 1.90
334 335 3.372206 CGAGCTCAGTCCAAAACTAATGG 59.628 47.826 15.40 0.00 36.07 3.16
335 336 3.690460 AGCTCAGTCCAAAACTAATGGG 58.310 45.455 0.00 0.00 38.54 4.00
336 337 2.164422 GCTCAGTCCAAAACTAATGGGC 59.836 50.000 0.00 0.00 43.03 5.36
340 341 1.204704 GTCCAAAACTAATGGGCTGGC 59.795 52.381 0.00 0.00 39.51 4.85
341 342 0.536724 CCAAAACTAATGGGCTGGCC 59.463 55.000 14.23 14.23 34.15 5.36
358 359 0.890996 GCCCAACCCAGACTCAACTG 60.891 60.000 0.00 0.00 37.61 3.16
364 365 1.668294 CCAGACTCAACTGAGCCGT 59.332 57.895 6.63 0.00 45.79 5.68
409 424 3.175710 AACCCAACCGAGCCCACT 61.176 61.111 0.00 0.00 0.00 4.00
480 514 0.918799 TTTCCCATAGGAGCCAGCCA 60.919 55.000 0.00 0.00 45.19 4.75
528 562 1.392710 CCCCATCGTCTCCGTTAGCT 61.393 60.000 0.00 0.00 35.01 3.32
529 563 0.460311 CCCATCGTCTCCGTTAGCTT 59.540 55.000 0.00 0.00 35.01 3.74
530 564 1.536284 CCCATCGTCTCCGTTAGCTTC 60.536 57.143 0.00 0.00 35.01 3.86
531 565 1.536284 CCATCGTCTCCGTTAGCTTCC 60.536 57.143 0.00 0.00 35.01 3.46
532 566 0.745468 ATCGTCTCCGTTAGCTTCCC 59.255 55.000 0.00 0.00 35.01 3.97
533 567 1.141234 CGTCTCCGTTAGCTTCCCC 59.859 63.158 0.00 0.00 0.00 4.81
534 568 1.321074 CGTCTCCGTTAGCTTCCCCT 61.321 60.000 0.00 0.00 0.00 4.79
583 617 1.134580 GTCGAAACCCTAACCCTAGCC 60.135 57.143 0.00 0.00 0.00 3.93
586 620 0.178825 AAACCCTAACCCTAGCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
1272 1306 2.112297 GTCCGTTTCCAGTGCCCA 59.888 61.111 0.00 0.00 0.00 5.36
1288 1322 4.268687 CAGTCACTGGGTTCGAGC 57.731 61.111 0.00 0.00 0.00 5.03
1398 1432 3.350219 TTGGTCTGCCATAAGGAGTTC 57.650 47.619 0.00 0.00 45.56 3.01
1405 1439 2.103094 TGCCATAAGGAGTTCGATGAGG 59.897 50.000 0.00 0.00 36.89 3.86
1485 1519 0.261696 AGGAGGAGAGAGGGAAGCTC 59.738 60.000 0.00 0.00 0.00 4.09
1541 1575 0.987294 AGTGGGAGTAAGCATGCTGT 59.013 50.000 23.48 13.84 0.00 4.40
1617 1654 0.388520 CAGCAAAGCGGTTTAAGGCC 60.389 55.000 12.94 0.00 0.00 5.19
1764 1801 0.709397 TTGGGGAGATTCCAATGGCA 59.291 50.000 0.00 0.00 39.15 4.92
1999 2038 5.557891 AGCAATTTGTCTGAGTAATGCTC 57.442 39.130 0.00 0.00 44.36 4.26
2013 2052 8.846943 TGAGTAATGCTCTAGTTTTCATTCAA 57.153 30.769 0.00 0.00 44.41 2.69
2030 2069 9.630098 TTTCATTCAAAGAGAAGCAATATGTTC 57.370 29.630 0.00 0.00 40.15 3.18
2073 2112 4.314740 TGTAATGGTTGAAACAGTTGGC 57.685 40.909 0.00 0.00 0.00 4.52
2083 2122 3.126858 TGAAACAGTTGGCGCTTATCATC 59.873 43.478 7.64 0.00 0.00 2.92
2144 2278 6.473455 GCTGTAATTCATTCACTTGCCATTAC 59.527 38.462 0.00 0.00 0.00 1.89
2145 2279 6.550843 TGTAATTCATTCACTTGCCATTACG 58.449 36.000 0.00 0.00 31.58 3.18
2177 2311 9.696917 ATTTCAAAGTACTTCTTTAATTGCTGG 57.303 29.630 8.95 0.00 43.57 4.85
2185 2319 5.598417 ACTTCTTTAATTGCTGGTCAAAGGT 59.402 36.000 0.00 0.00 38.34 3.50
2209 2343 9.939802 GGTTTATCCTAACAAGACCGAATATAT 57.060 33.333 0.00 0.00 0.00 0.86
2243 2377 4.760530 AACGGAGGGGGTACTAATTTAC 57.239 45.455 0.00 0.00 0.00 2.01
2298 2432 4.724279 AAGGGTTCCTAGTGTTCATTGT 57.276 40.909 0.00 0.00 31.13 2.71
2338 2511 5.551233 TCTTGGCTATGCAATCCTACATAC 58.449 41.667 0.00 0.00 0.00 2.39
2386 2559 4.447365 GCATGCGCAAGTTGACTC 57.553 55.556 17.11 0.00 38.36 3.36
2395 2568 3.305629 GCGCAAGTTGACTCTCAAGATAG 59.694 47.826 7.16 0.00 37.00 2.08
2424 2597 9.703892 CAAATGGTTTCTATGGTTTTCAATGTA 57.296 29.630 0.00 0.00 0.00 2.29
2462 2635 7.023575 GTGCCACTTTACTGAACAGATAAATG 58.976 38.462 8.87 2.90 0.00 2.32
2463 2636 6.030228 GCCACTTTACTGAACAGATAAATGC 58.970 40.000 8.87 8.55 0.00 3.56
2501 2674 5.547465 TCGATGTTTAGTTGTCCATGAAGT 58.453 37.500 0.00 0.00 0.00 3.01
2509 2682 4.906618 AGTTGTCCATGAAGTACGGAATT 58.093 39.130 0.00 0.00 0.00 2.17
2514 2687 2.190161 CATGAAGTACGGAATTCGCGA 58.810 47.619 18.98 3.71 43.89 5.87
2517 2690 3.255725 TGAAGTACGGAATTCGCGAAAT 58.744 40.909 27.23 18.83 43.89 2.17
2525 2698 2.415168 GGAATTCGCGAAATGACAGTGA 59.585 45.455 27.23 0.00 0.00 3.41
2527 2700 2.148916 TTCGCGAAATGACAGTGAGT 57.851 45.000 21.14 0.00 0.00 3.41
2545 2718 1.073284 AGTGGTAGAACATTTGGCGGT 59.927 47.619 0.00 0.00 0.00 5.68
2555 2728 4.370364 ACATTTGGCGGTCACATTAATC 57.630 40.909 0.00 0.00 0.00 1.75
2595 2768 1.238439 TGCTGTAGTTGCTCTTTGCC 58.762 50.000 0.00 0.00 42.00 4.52
2603 2776 2.154462 GTTGCTCTTTGCCTGCTTCTA 58.846 47.619 0.00 0.00 42.00 2.10
2654 2827 6.223120 ACATGGTGAAACTTTGCCTATTTTC 58.777 36.000 0.00 0.00 36.74 2.29
2692 2865 6.728632 TCCTTTGGGCTTTTATTTCCATAACT 59.271 34.615 0.00 0.00 0.00 2.24
2756 2930 6.387192 TGGCATTTGGGCTATACTATATGT 57.613 37.500 0.00 0.00 43.83 2.29
2813 2987 8.518430 TGGATGTACATATTTGCTAATTGTGT 57.482 30.769 8.71 13.13 0.00 3.72
2917 3091 8.854614 AGATTCATAGGATGCCATAAACTTAC 57.145 34.615 0.00 0.00 0.00 2.34
2918 3092 7.604164 AGATTCATAGGATGCCATAAACTTACG 59.396 37.037 0.00 0.00 0.00 3.18
2919 3093 6.169557 TCATAGGATGCCATAAACTTACGT 57.830 37.500 0.00 0.00 0.00 3.57
2920 3094 7.292713 TCATAGGATGCCATAAACTTACGTA 57.707 36.000 0.00 0.00 0.00 3.57
2921 3095 7.375834 TCATAGGATGCCATAAACTTACGTAG 58.624 38.462 0.00 0.00 0.00 3.51
2922 3096 4.957296 AGGATGCCATAAACTTACGTAGG 58.043 43.478 2.72 2.72 0.00 3.18
2923 3097 4.652421 AGGATGCCATAAACTTACGTAGGA 59.348 41.667 12.14 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.097589 AGCTTATTGAATTCCTGCTTGAGC 59.902 41.667 2.27 3.94 42.50 4.26
1 2 5.589452 AGAGCTTATTGAATTCCTGCTTGAG 59.411 40.000 2.27 0.00 0.00 3.02
2 3 5.356190 CAGAGCTTATTGAATTCCTGCTTGA 59.644 40.000 2.27 0.00 0.00 3.02
3 4 5.356190 TCAGAGCTTATTGAATTCCTGCTTG 59.644 40.000 2.27 6.91 0.00 4.01
4 5 5.503927 TCAGAGCTTATTGAATTCCTGCTT 58.496 37.500 2.27 0.00 0.00 3.91
5 6 5.104610 TCTCAGAGCTTATTGAATTCCTGCT 60.105 40.000 2.27 5.35 0.00 4.24
6 7 5.121811 TCTCAGAGCTTATTGAATTCCTGC 58.878 41.667 2.27 0.52 0.00 4.85
7 8 7.218614 AGATCTCAGAGCTTATTGAATTCCTG 58.781 38.462 2.27 0.59 0.00 3.86
8 9 7.377696 AGATCTCAGAGCTTATTGAATTCCT 57.622 36.000 2.27 0.00 0.00 3.36
9 10 6.650390 GGAGATCTCAGAGCTTATTGAATTCC 59.350 42.308 23.85 0.00 0.00 3.01
10 11 7.444299 AGGAGATCTCAGAGCTTATTGAATTC 58.556 38.462 23.85 0.00 0.00 2.17
11 12 7.377696 AGGAGATCTCAGAGCTTATTGAATT 57.622 36.000 23.85 0.00 0.00 2.17
12 13 6.999705 AGGAGATCTCAGAGCTTATTGAAT 57.000 37.500 23.85 0.00 0.00 2.57
13 14 6.183360 GGAAGGAGATCTCAGAGCTTATTGAA 60.183 42.308 23.85 0.00 0.00 2.69
14 15 5.304101 GGAAGGAGATCTCAGAGCTTATTGA 59.696 44.000 23.85 0.00 0.00 2.57
15 16 5.305128 AGGAAGGAGATCTCAGAGCTTATTG 59.695 44.000 23.85 0.00 0.00 1.90
16 17 5.466819 AGGAAGGAGATCTCAGAGCTTATT 58.533 41.667 23.85 7.08 0.00 1.40
17 18 5.078683 AGGAAGGAGATCTCAGAGCTTAT 57.921 43.478 23.85 7.67 0.00 1.73
18 19 4.167892 AGAGGAAGGAGATCTCAGAGCTTA 59.832 45.833 23.85 0.00 0.00 3.09
19 20 3.052642 AGAGGAAGGAGATCTCAGAGCTT 60.053 47.826 23.85 16.69 0.00 3.74
20 21 2.515429 AGAGGAAGGAGATCTCAGAGCT 59.485 50.000 23.85 9.08 0.00 4.09
21 22 2.949447 AGAGGAAGGAGATCTCAGAGC 58.051 52.381 23.85 6.82 0.00 4.09
22 23 4.796606 AGAAGAGGAAGGAGATCTCAGAG 58.203 47.826 23.85 0.00 0.00 3.35
23 24 4.386312 GGAGAAGAGGAAGGAGATCTCAGA 60.386 50.000 23.85 0.00 36.02 3.27
24 25 3.891366 GGAGAAGAGGAAGGAGATCTCAG 59.109 52.174 23.85 0.00 36.02 3.35
25 26 3.531397 AGGAGAAGAGGAAGGAGATCTCA 59.469 47.826 23.85 0.00 36.02 3.27
26 27 4.145052 GAGGAGAAGAGGAAGGAGATCTC 58.855 52.174 14.75 14.75 34.08 2.75
27 28 3.531397 TGAGGAGAAGAGGAAGGAGATCT 59.469 47.826 0.00 0.00 0.00 2.75
28 29 3.636764 GTGAGGAGAAGAGGAAGGAGATC 59.363 52.174 0.00 0.00 0.00 2.75
29 30 3.272020 AGTGAGGAGAAGAGGAAGGAGAT 59.728 47.826 0.00 0.00 0.00 2.75
30 31 2.652348 AGTGAGGAGAAGAGGAAGGAGA 59.348 50.000 0.00 0.00 0.00 3.71
31 32 2.760092 CAGTGAGGAGAAGAGGAAGGAG 59.240 54.545 0.00 0.00 0.00 3.69
32 33 2.558575 CCAGTGAGGAGAAGAGGAAGGA 60.559 54.545 0.00 0.00 41.22 3.36
33 34 1.830477 CCAGTGAGGAGAAGAGGAAGG 59.170 57.143 0.00 0.00 41.22 3.46
34 35 1.206849 GCCAGTGAGGAGAAGAGGAAG 59.793 57.143 0.00 0.00 41.22 3.46
35 36 1.270907 GCCAGTGAGGAGAAGAGGAA 58.729 55.000 0.00 0.00 41.22 3.36
36 37 0.616111 GGCCAGTGAGGAGAAGAGGA 60.616 60.000 0.00 0.00 41.22 3.71
37 38 0.617249 AGGCCAGTGAGGAGAAGAGG 60.617 60.000 5.01 0.00 41.22 3.69
38 39 0.823460 GAGGCCAGTGAGGAGAAGAG 59.177 60.000 5.01 0.00 41.22 2.85
39 40 0.115152 TGAGGCCAGTGAGGAGAAGA 59.885 55.000 5.01 0.00 41.22 2.87
40 41 1.202330 ATGAGGCCAGTGAGGAGAAG 58.798 55.000 5.01 0.00 41.22 2.85
41 42 1.556911 GAATGAGGCCAGTGAGGAGAA 59.443 52.381 5.01 0.00 41.22 2.87
42 43 1.198713 GAATGAGGCCAGTGAGGAGA 58.801 55.000 5.01 0.00 41.22 3.71
43 44 0.907486 TGAATGAGGCCAGTGAGGAG 59.093 55.000 5.01 0.00 41.22 3.69
44 45 1.588239 ATGAATGAGGCCAGTGAGGA 58.412 50.000 5.01 0.00 41.22 3.71
45 46 2.022195 CAATGAATGAGGCCAGTGAGG 58.978 52.381 5.01 0.00 41.84 3.86
46 47 2.022195 CCAATGAATGAGGCCAGTGAG 58.978 52.381 5.01 0.00 30.83 3.51
47 48 1.341285 CCCAATGAATGAGGCCAGTGA 60.341 52.381 5.01 0.00 30.83 3.41
48 49 1.108776 CCCAATGAATGAGGCCAGTG 58.891 55.000 5.01 0.00 0.00 3.66
49 50 0.685458 GCCCAATGAATGAGGCCAGT 60.685 55.000 5.01 0.00 38.64 4.00
50 51 0.685131 TGCCCAATGAATGAGGCCAG 60.685 55.000 5.01 0.00 41.84 4.85
51 52 0.971959 GTGCCCAATGAATGAGGCCA 60.972 55.000 5.01 0.00 41.84 5.36
52 53 1.818555 GTGCCCAATGAATGAGGCC 59.181 57.895 0.00 0.00 41.84 5.19
53 54 1.315257 ACGTGCCCAATGAATGAGGC 61.315 55.000 0.00 0.00 42.46 4.70
54 55 0.734889 GACGTGCCCAATGAATGAGG 59.265 55.000 0.00 0.00 0.00 3.86
55 56 1.452110 TGACGTGCCCAATGAATGAG 58.548 50.000 0.00 0.00 0.00 2.90
56 57 2.127271 ATGACGTGCCCAATGAATGA 57.873 45.000 0.00 0.00 0.00 2.57
57 58 3.378112 AGTTATGACGTGCCCAATGAATG 59.622 43.478 0.00 0.00 0.00 2.67
58 59 3.620488 AGTTATGACGTGCCCAATGAAT 58.380 40.909 0.00 0.00 0.00 2.57
59 60 3.066291 AGTTATGACGTGCCCAATGAA 57.934 42.857 0.00 0.00 0.00 2.57
60 61 2.779755 AGTTATGACGTGCCCAATGA 57.220 45.000 0.00 0.00 0.00 2.57
61 62 3.440173 AGAAAGTTATGACGTGCCCAATG 59.560 43.478 0.00 0.00 0.00 2.82
62 63 3.686016 AGAAAGTTATGACGTGCCCAAT 58.314 40.909 0.00 0.00 0.00 3.16
63 64 3.134574 AGAAAGTTATGACGTGCCCAA 57.865 42.857 0.00 0.00 0.00 4.12
64 65 2.851263 AGAAAGTTATGACGTGCCCA 57.149 45.000 0.00 0.00 0.00 5.36
65 66 4.933400 TCTTAAGAAAGTTATGACGTGCCC 59.067 41.667 1.68 0.00 34.13 5.36
66 67 6.535508 AGATCTTAAGAAAGTTATGACGTGCC 59.464 38.462 9.71 0.00 34.13 5.01
67 68 7.489757 AGAGATCTTAAGAAAGTTATGACGTGC 59.510 37.037 9.71 0.00 34.13 5.34
68 69 8.918961 AGAGATCTTAAGAAAGTTATGACGTG 57.081 34.615 9.71 0.00 34.13 4.49
69 70 9.930693 AAAGAGATCTTAAGAAAGTTATGACGT 57.069 29.630 9.71 0.00 34.61 4.34
71 72 9.980780 GCAAAGAGATCTTAAGAAAGTTATGAC 57.019 33.333 9.71 0.00 34.61 3.06
72 73 8.873830 CGCAAAGAGATCTTAAGAAAGTTATGA 58.126 33.333 9.71 0.00 34.61 2.15
73 74 7.637907 GCGCAAAGAGATCTTAAGAAAGTTATG 59.362 37.037 9.71 6.75 34.61 1.90
74 75 7.550906 AGCGCAAAGAGATCTTAAGAAAGTTAT 59.449 33.333 11.47 0.00 34.61 1.89
75 76 6.874134 AGCGCAAAGAGATCTTAAGAAAGTTA 59.126 34.615 11.47 0.00 34.61 2.24
76 77 5.703130 AGCGCAAAGAGATCTTAAGAAAGTT 59.297 36.000 11.47 0.00 34.61 2.66
77 78 5.241662 AGCGCAAAGAGATCTTAAGAAAGT 58.758 37.500 11.47 0.00 34.61 2.66
78 79 5.793026 AGCGCAAAGAGATCTTAAGAAAG 57.207 39.130 11.47 0.00 34.61 2.62
79 80 6.348540 GGAAAGCGCAAAGAGATCTTAAGAAA 60.349 38.462 11.47 0.00 34.61 2.52
80 81 5.122396 GGAAAGCGCAAAGAGATCTTAAGAA 59.878 40.000 11.47 0.00 34.61 2.52
81 82 4.631813 GGAAAGCGCAAAGAGATCTTAAGA 59.368 41.667 11.47 7.82 34.61 2.10
82 83 4.493220 CGGAAAGCGCAAAGAGATCTTAAG 60.493 45.833 11.47 0.00 34.61 1.85
83 84 3.370978 CGGAAAGCGCAAAGAGATCTTAA 59.629 43.478 11.47 0.00 34.61 1.85
84 85 2.930040 CGGAAAGCGCAAAGAGATCTTA 59.070 45.455 11.47 0.00 34.61 2.10
85 86 1.734465 CGGAAAGCGCAAAGAGATCTT 59.266 47.619 11.47 0.00 37.91 2.40
86 87 1.066858 TCGGAAAGCGCAAAGAGATCT 60.067 47.619 11.47 0.00 0.00 2.75
87 88 1.359848 TCGGAAAGCGCAAAGAGATC 58.640 50.000 11.47 0.00 0.00 2.75
88 89 1.734465 CTTCGGAAAGCGCAAAGAGAT 59.266 47.619 11.47 0.00 0.00 2.75
89 90 1.148310 CTTCGGAAAGCGCAAAGAGA 58.852 50.000 11.47 0.00 0.00 3.10
90 91 3.664930 CTTCGGAAAGCGCAAAGAG 57.335 52.632 11.47 0.00 0.00 2.85
99 100 2.485814 CCAAAGAAGAGGCTTCGGAAAG 59.514 50.000 0.00 0.00 35.47 2.62
100 101 2.158667 ACCAAAGAAGAGGCTTCGGAAA 60.159 45.455 0.00 0.00 0.00 3.13
101 102 1.420138 ACCAAAGAAGAGGCTTCGGAA 59.580 47.619 0.00 0.00 0.00 4.30
102 103 1.056660 ACCAAAGAAGAGGCTTCGGA 58.943 50.000 0.00 0.00 0.00 4.55
103 104 1.897560 AACCAAAGAAGAGGCTTCGG 58.102 50.000 0.00 0.00 0.00 4.30
104 105 3.142174 AGAAACCAAAGAAGAGGCTTCG 58.858 45.455 0.00 0.00 35.64 3.79
105 106 4.580580 TGAAGAAACCAAAGAAGAGGCTTC 59.419 41.667 0.00 0.00 31.68 3.86
106 107 4.536765 TGAAGAAACCAAAGAAGAGGCTT 58.463 39.130 0.00 0.00 0.00 4.35
107 108 4.140536 CTGAAGAAACCAAAGAAGAGGCT 58.859 43.478 0.00 0.00 0.00 4.58
108 109 3.304996 GCTGAAGAAACCAAAGAAGAGGC 60.305 47.826 0.00 0.00 0.00 4.70
109 110 3.885297 TGCTGAAGAAACCAAAGAAGAGG 59.115 43.478 0.00 0.00 0.00 3.69
110 111 4.261363 GGTGCTGAAGAAACCAAAGAAGAG 60.261 45.833 0.00 0.00 33.94 2.85
111 112 3.632145 GGTGCTGAAGAAACCAAAGAAGA 59.368 43.478 0.00 0.00 33.94 2.87
112 113 3.243535 GGGTGCTGAAGAAACCAAAGAAG 60.244 47.826 0.00 0.00 35.56 2.85
113 114 2.693074 GGGTGCTGAAGAAACCAAAGAA 59.307 45.455 0.00 0.00 35.56 2.52
114 115 2.091885 AGGGTGCTGAAGAAACCAAAGA 60.092 45.455 0.00 0.00 35.56 2.52
115 116 2.310538 AGGGTGCTGAAGAAACCAAAG 58.689 47.619 0.00 0.00 35.56 2.77
116 117 2.452600 AGGGTGCTGAAGAAACCAAA 57.547 45.000 0.00 0.00 35.56 3.28
117 118 2.430332 CAAAGGGTGCTGAAGAAACCAA 59.570 45.455 0.00 0.00 35.56 3.67
118 119 2.031120 CAAAGGGTGCTGAAGAAACCA 58.969 47.619 0.00 0.00 35.56 3.67
119 120 2.306847 TCAAAGGGTGCTGAAGAAACC 58.693 47.619 0.00 0.00 0.00 3.27
120 121 3.057245 GGATCAAAGGGTGCTGAAGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
121 122 3.157087 GGATCAAAGGGTGCTGAAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
122 123 2.555227 GGGATCAAAGGGTGCTGAAGAA 60.555 50.000 0.00 0.00 0.00 2.52
123 124 1.004745 GGGATCAAAGGGTGCTGAAGA 59.995 52.381 0.00 0.00 0.00 2.87
124 125 1.272092 TGGGATCAAAGGGTGCTGAAG 60.272 52.381 0.00 0.00 0.00 3.02
125 126 0.776810 TGGGATCAAAGGGTGCTGAA 59.223 50.000 0.00 0.00 0.00 3.02
126 127 0.329261 CTGGGATCAAAGGGTGCTGA 59.671 55.000 0.00 0.00 0.00 4.26
127 128 0.038744 ACTGGGATCAAAGGGTGCTG 59.961 55.000 0.00 0.00 0.00 4.41
128 129 0.329596 GACTGGGATCAAAGGGTGCT 59.670 55.000 0.00 0.00 0.00 4.40
129 130 0.038166 TGACTGGGATCAAAGGGTGC 59.962 55.000 0.00 0.00 0.00 5.01
130 131 2.025981 TCATGACTGGGATCAAAGGGTG 60.026 50.000 0.00 0.00 30.82 4.61
131 132 2.278245 TCATGACTGGGATCAAAGGGT 58.722 47.619 0.00 0.00 30.82 4.34
132 133 3.370840 TTCATGACTGGGATCAAAGGG 57.629 47.619 0.00 0.00 30.82 3.95
133 134 3.127548 CGTTTCATGACTGGGATCAAAGG 59.872 47.826 0.00 0.00 30.82 3.11
134 135 4.002982 TCGTTTCATGACTGGGATCAAAG 58.997 43.478 0.00 0.00 30.82 2.77
135 136 4.002982 CTCGTTTCATGACTGGGATCAAA 58.997 43.478 0.00 0.00 30.82 2.69
136 137 3.260632 TCTCGTTTCATGACTGGGATCAA 59.739 43.478 0.00 0.00 30.82 2.57
137 138 2.831526 TCTCGTTTCATGACTGGGATCA 59.168 45.455 0.00 0.00 0.00 2.92
138 139 3.118956 AGTCTCGTTTCATGACTGGGATC 60.119 47.826 0.00 0.00 39.29 3.36
139 140 2.834549 AGTCTCGTTTCATGACTGGGAT 59.165 45.455 0.00 0.00 39.29 3.85
140 141 2.248248 AGTCTCGTTTCATGACTGGGA 58.752 47.619 0.00 0.00 39.29 4.37
141 142 2.751166 AGTCTCGTTTCATGACTGGG 57.249 50.000 0.00 0.00 39.29 4.45
144 145 2.868044 GCCACAGTCTCGTTTCATGACT 60.868 50.000 0.00 0.00 41.15 3.41
145 146 1.461127 GCCACAGTCTCGTTTCATGAC 59.539 52.381 0.00 0.00 0.00 3.06
146 147 1.608025 GGCCACAGTCTCGTTTCATGA 60.608 52.381 0.00 0.00 0.00 3.07
147 148 0.798776 GGCCACAGTCTCGTTTCATG 59.201 55.000 0.00 0.00 0.00 3.07
148 149 0.687354 AGGCCACAGTCTCGTTTCAT 59.313 50.000 5.01 0.00 0.00 2.57
149 150 0.468226 AAGGCCACAGTCTCGTTTCA 59.532 50.000 5.01 0.00 0.00 2.69
150 151 2.450609 TAAGGCCACAGTCTCGTTTC 57.549 50.000 5.01 0.00 0.00 2.78
151 152 2.922740 TTAAGGCCACAGTCTCGTTT 57.077 45.000 5.01 0.00 0.00 3.60
152 153 2.922740 TTTAAGGCCACAGTCTCGTT 57.077 45.000 5.01 0.00 0.00 3.85
153 154 2.699954 CATTTAAGGCCACAGTCTCGT 58.300 47.619 5.01 0.00 0.00 4.18
154 155 1.398390 GCATTTAAGGCCACAGTCTCG 59.602 52.381 5.01 0.00 0.00 4.04
155 156 2.162408 GTGCATTTAAGGCCACAGTCTC 59.838 50.000 5.01 0.00 0.00 3.36
156 157 2.162681 GTGCATTTAAGGCCACAGTCT 58.837 47.619 5.01 0.00 0.00 3.24
157 158 1.202348 GGTGCATTTAAGGCCACAGTC 59.798 52.381 5.01 0.00 0.00 3.51
158 159 1.203050 AGGTGCATTTAAGGCCACAGT 60.203 47.619 5.01 0.00 0.00 3.55
159 160 1.549203 AGGTGCATTTAAGGCCACAG 58.451 50.000 5.01 0.00 0.00 3.66
160 161 2.620367 CCTAGGTGCATTTAAGGCCACA 60.620 50.000 5.01 0.00 0.00 4.17
161 162 2.024414 CCTAGGTGCATTTAAGGCCAC 58.976 52.381 5.01 0.00 0.00 5.01
162 163 1.684869 GCCTAGGTGCATTTAAGGCCA 60.685 52.381 11.31 0.00 45.69 5.36
163 164 1.032794 GCCTAGGTGCATTTAAGGCC 58.967 55.000 11.31 0.00 45.69 5.19
165 166 1.308998 CGGCCTAGGTGCATTTAAGG 58.691 55.000 11.31 0.00 0.00 2.69
166 167 1.308998 CCGGCCTAGGTGCATTTAAG 58.691 55.000 11.31 0.00 0.00 1.85
167 168 0.621609 ACCGGCCTAGGTGCATTTAA 59.378 50.000 11.31 0.00 44.07 1.52
168 169 0.179468 GACCGGCCTAGGTGCATTTA 59.821 55.000 11.31 0.00 46.09 1.40
169 170 1.077716 GACCGGCCTAGGTGCATTT 60.078 57.895 11.31 0.00 46.09 2.32
170 171 2.590092 GACCGGCCTAGGTGCATT 59.410 61.111 11.31 0.00 46.09 3.56
174 175 1.749334 GAGATGGACCGGCCTAGGTG 61.749 65.000 11.31 3.25 46.09 4.00
176 177 2.565645 CGAGATGGACCGGCCTAGG 61.566 68.421 3.67 3.67 37.63 3.02
177 178 3.043419 CGAGATGGACCGGCCTAG 58.957 66.667 14.76 0.00 37.63 3.02
178 179 3.224324 GCGAGATGGACCGGCCTA 61.224 66.667 14.76 0.00 37.63 3.93
180 181 4.593864 GAGCGAGATGGACCGGCC 62.594 72.222 0.00 4.32 37.10 6.13
181 182 3.532155 AGAGCGAGATGGACCGGC 61.532 66.667 0.00 0.00 0.00 6.13
182 183 2.415010 CAGAGCGAGATGGACCGG 59.585 66.667 0.00 0.00 0.00 5.28
183 184 2.279120 GCAGAGCGAGATGGACCG 60.279 66.667 0.00 0.00 0.00 4.79
184 185 2.107953 GGCAGAGCGAGATGGACC 59.892 66.667 0.00 0.00 0.00 4.46
185 186 2.279120 CGGCAGAGCGAGATGGAC 60.279 66.667 0.00 0.00 0.00 4.02
186 187 4.212913 GCGGCAGAGCGAGATGGA 62.213 66.667 0.00 0.00 0.00 3.41
200 201 2.148558 GATCTAGGGAAGCCTCGCGG 62.149 65.000 6.13 0.00 39.45 6.46
201 202 1.175983 AGATCTAGGGAAGCCTCGCG 61.176 60.000 0.00 0.00 39.45 5.87
202 203 0.601057 GAGATCTAGGGAAGCCTCGC 59.399 60.000 0.00 0.00 34.75 5.03
203 204 0.878416 CGAGATCTAGGGAAGCCTCG 59.122 60.000 0.00 0.00 39.73 4.63
204 205 0.601057 GCGAGATCTAGGGAAGCCTC 59.399 60.000 4.92 0.00 0.00 4.70
205 206 0.187361 AGCGAGATCTAGGGAAGCCT 59.813 55.000 4.92 0.00 0.00 4.58
206 207 1.912417 TAGCGAGATCTAGGGAAGCC 58.088 55.000 4.92 0.00 0.00 4.35
207 208 4.439563 GCTTATAGCGAGATCTAGGGAAGC 60.440 50.000 4.92 7.66 31.58 3.86
208 209 5.243426 GCTTATAGCGAGATCTAGGGAAG 57.757 47.826 4.92 1.90 0.00 3.46
237 238 2.181021 GGATCCTATACCGCCGCG 59.819 66.667 5.59 5.59 0.00 6.46
238 239 1.511768 GAGGATCCTATACCGCCGC 59.488 63.158 16.16 0.00 0.00 6.53
239 240 1.801332 CGAGGATCCTATACCGCCG 59.199 63.158 16.16 8.40 0.00 6.46
240 241 0.966370 AGCGAGGATCCTATACCGCC 60.966 60.000 31.00 18.71 43.11 6.13
241 242 0.452585 GAGCGAGGATCCTATACCGC 59.547 60.000 28.87 28.87 42.52 5.68
242 243 2.116827 AGAGCGAGGATCCTATACCG 57.883 55.000 16.16 15.20 0.00 4.02
243 244 2.946990 GCTAGAGCGAGGATCCTATACC 59.053 54.545 16.16 4.91 0.00 2.73
244 245 3.611970 TGCTAGAGCGAGGATCCTATAC 58.388 50.000 16.16 7.16 45.83 1.47
245 246 3.879998 CTGCTAGAGCGAGGATCCTATA 58.120 50.000 16.16 2.32 45.83 1.31
246 247 2.722094 CTGCTAGAGCGAGGATCCTAT 58.278 52.381 16.16 3.44 45.83 2.57
247 248 1.884497 GCTGCTAGAGCGAGGATCCTA 60.884 57.143 16.16 0.00 45.83 2.94
248 249 1.178534 GCTGCTAGAGCGAGGATCCT 61.179 60.000 16.13 16.13 45.83 3.24
249 250 1.288752 GCTGCTAGAGCGAGGATCC 59.711 63.158 2.48 2.48 45.83 3.36
250 251 4.963815 GCTGCTAGAGCGAGGATC 57.036 61.111 0.00 0.00 45.83 3.36
258 259 1.537776 CGACTTGGATGGCTGCTAGAG 60.538 57.143 0.00 0.00 0.00 2.43
259 260 0.461548 CGACTTGGATGGCTGCTAGA 59.538 55.000 0.00 0.00 0.00 2.43
260 261 0.461548 TCGACTTGGATGGCTGCTAG 59.538 55.000 0.00 0.00 0.00 3.42
261 262 0.461548 CTCGACTTGGATGGCTGCTA 59.538 55.000 0.00 0.00 0.00 3.49
262 263 1.220206 CTCGACTTGGATGGCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
263 264 2.467826 GCTCGACTTGGATGGCTGC 61.468 63.158 0.00 0.00 0.00 5.25
264 265 0.809241 GAGCTCGACTTGGATGGCTG 60.809 60.000 0.00 0.00 0.00 4.85
265 266 1.260538 TGAGCTCGACTTGGATGGCT 61.261 55.000 9.64 0.00 0.00 4.75
266 267 0.391661 TTGAGCTCGACTTGGATGGC 60.392 55.000 9.64 0.00 0.00 4.40
267 268 1.363744 GTTGAGCTCGACTTGGATGG 58.636 55.000 24.47 0.00 0.00 3.51
268 269 1.363744 GGTTGAGCTCGACTTGGATG 58.636 55.000 29.01 0.00 0.00 3.51
269 270 0.250513 GGGTTGAGCTCGACTTGGAT 59.749 55.000 29.01 0.00 0.00 3.41
270 271 1.118965 TGGGTTGAGCTCGACTTGGA 61.119 55.000 29.01 11.27 0.00 3.53
271 272 0.671781 CTGGGTTGAGCTCGACTTGG 60.672 60.000 29.01 16.78 0.00 3.61
272 273 0.318441 TCTGGGTTGAGCTCGACTTG 59.682 55.000 29.01 19.72 0.00 3.16
273 274 0.318762 GTCTGGGTTGAGCTCGACTT 59.681 55.000 29.01 0.00 0.00 3.01
274 275 0.540830 AGTCTGGGTTGAGCTCGACT 60.541 55.000 29.01 20.49 30.52 4.18
275 276 0.109039 GAGTCTGGGTTGAGCTCGAC 60.109 60.000 23.86 23.86 0.00 4.20
276 277 0.539669 TGAGTCTGGGTTGAGCTCGA 60.540 55.000 9.64 3.88 0.00 4.04
277 278 0.318441 TTGAGTCTGGGTTGAGCTCG 59.682 55.000 9.64 0.00 0.00 5.03
278 279 1.609320 GGTTGAGTCTGGGTTGAGCTC 60.609 57.143 6.82 6.82 0.00 4.09
279 280 0.398318 GGTTGAGTCTGGGTTGAGCT 59.602 55.000 0.00 0.00 0.00 4.09
280 281 0.951040 CGGTTGAGTCTGGGTTGAGC 60.951 60.000 0.00 0.00 0.00 4.26
281 282 0.679505 TCGGTTGAGTCTGGGTTGAG 59.320 55.000 0.00 0.00 0.00 3.02
282 283 0.679505 CTCGGTTGAGTCTGGGTTGA 59.320 55.000 0.00 0.00 37.46 3.18
283 284 0.951040 GCTCGGTTGAGTCTGGGTTG 60.951 60.000 0.00 0.00 44.48 3.77
284 285 1.371558 GCTCGGTTGAGTCTGGGTT 59.628 57.895 0.00 0.00 44.48 4.11
285 286 2.584391 GGCTCGGTTGAGTCTGGGT 61.584 63.158 0.00 0.00 43.69 4.51
286 287 2.266055 GGCTCGGTTGAGTCTGGG 59.734 66.667 0.00 0.00 43.69 4.45
287 288 2.125912 CGGCTCGGTTGAGTCTGG 60.126 66.667 0.00 0.00 44.89 3.86
288 289 1.444553 GACGGCTCGGTTGAGTCTG 60.445 63.158 0.00 0.00 44.89 3.51
289 290 2.637383 GGACGGCTCGGTTGAGTCT 61.637 63.158 0.00 0.00 44.89 3.24
290 291 2.126031 GGACGGCTCGGTTGAGTC 60.126 66.667 0.00 0.00 44.48 3.36
291 292 4.052229 CGGACGGCTCGGTTGAGT 62.052 66.667 0.00 0.00 44.48 3.41
292 293 3.685214 CTCGGACGGCTCGGTTGAG 62.685 68.421 0.00 0.00 45.49 3.02
293 294 3.744719 CTCGGACGGCTCGGTTGA 61.745 66.667 0.00 0.00 0.00 3.18
294 295 3.966026 GACTCGGACGGCTCGGTTG 62.966 68.421 0.00 0.00 0.00 3.77
295 296 3.745803 GACTCGGACGGCTCGGTT 61.746 66.667 0.00 0.00 0.00 4.44
298 299 4.225340 CTCGACTCGGACGGCTCG 62.225 72.222 0.00 0.00 0.00 5.03
299 300 4.539881 GCTCGACTCGGACGGCTC 62.540 72.222 0.00 0.00 0.00 4.70
301 302 4.539881 GAGCTCGACTCGGACGGC 62.540 72.222 0.00 0.00 35.18 5.68
308 309 2.062519 GTTTTGGACTGAGCTCGACTC 58.937 52.381 9.64 2.92 46.45 3.36
309 310 1.689273 AGTTTTGGACTGAGCTCGACT 59.311 47.619 9.64 0.14 37.17 4.18
310 311 2.156343 AGTTTTGGACTGAGCTCGAC 57.844 50.000 9.64 4.50 37.17 4.20
311 312 4.245660 CATTAGTTTTGGACTGAGCTCGA 58.754 43.478 9.64 0.00 39.48 4.04
312 313 3.372206 CCATTAGTTTTGGACTGAGCTCG 59.628 47.826 9.64 6.63 39.48 5.03
313 314 3.691609 CCCATTAGTTTTGGACTGAGCTC 59.308 47.826 6.82 6.82 39.48 4.09
314 315 3.690460 CCCATTAGTTTTGGACTGAGCT 58.310 45.455 0.00 0.00 39.48 4.09
315 316 2.164422 GCCCATTAGTTTTGGACTGAGC 59.836 50.000 0.00 0.00 39.48 4.26
316 317 3.441572 CAGCCCATTAGTTTTGGACTGAG 59.558 47.826 0.27 0.00 44.78 3.35
317 318 3.420893 CAGCCCATTAGTTTTGGACTGA 58.579 45.455 0.27 0.00 44.78 3.41
318 319 2.493278 CCAGCCCATTAGTTTTGGACTG 59.507 50.000 0.00 0.00 42.49 3.51
319 320 2.807676 CCAGCCCATTAGTTTTGGACT 58.192 47.619 0.00 0.00 42.55 3.85
320 321 1.204704 GCCAGCCCATTAGTTTTGGAC 59.795 52.381 0.00 0.00 36.26 4.02
321 322 1.555967 GCCAGCCCATTAGTTTTGGA 58.444 50.000 0.00 0.00 36.26 3.53
322 323 0.536724 GGCCAGCCCATTAGTTTTGG 59.463 55.000 0.00 0.00 0.00 3.28
335 336 3.927481 GAGTCTGGGTTGGGCCAGC 62.927 68.421 12.53 12.53 39.65 4.85
336 337 2.067932 TTGAGTCTGGGTTGGGCCAG 62.068 60.000 6.23 0.00 39.65 4.85
337 338 2.081787 TTGAGTCTGGGTTGGGCCA 61.082 57.895 0.00 0.00 39.65 5.36
338 339 1.603739 GTTGAGTCTGGGTTGGGCC 60.604 63.158 0.00 0.00 0.00 5.80
339 340 0.890996 CAGTTGAGTCTGGGTTGGGC 60.891 60.000 0.00 0.00 0.00 5.36
340 341 0.764890 TCAGTTGAGTCTGGGTTGGG 59.235 55.000 0.00 0.00 36.25 4.12
341 342 1.879796 GCTCAGTTGAGTCTGGGTTGG 60.880 57.143 10.57 0.00 43.85 3.77
342 343 1.517242 GCTCAGTTGAGTCTGGGTTG 58.483 55.000 10.57 0.00 43.85 3.77
343 344 0.398318 GGCTCAGTTGAGTCTGGGTT 59.602 55.000 10.57 0.00 43.13 4.11
344 345 1.821061 CGGCTCAGTTGAGTCTGGGT 61.821 60.000 11.54 0.00 44.21 4.51
345 346 1.079543 CGGCTCAGTTGAGTCTGGG 60.080 63.158 11.54 0.00 44.21 4.45
346 347 0.389166 GACGGCTCAGTTGAGTCTGG 60.389 60.000 11.54 0.43 44.21 3.86
347 348 0.389166 GGACGGCTCAGTTGAGTCTG 60.389 60.000 11.54 10.31 44.21 3.51
348 349 1.867919 CGGACGGCTCAGTTGAGTCT 61.868 60.000 11.54 0.00 44.21 3.24
349 350 1.444553 CGGACGGCTCAGTTGAGTC 60.445 63.158 10.57 7.30 43.85 3.36
350 351 1.867919 CTCGGACGGCTCAGTTGAGT 61.868 60.000 10.57 0.00 43.85 3.41
351 352 1.153939 CTCGGACGGCTCAGTTGAG 60.154 63.158 4.77 4.77 44.75 3.02
358 359 4.539881 GCTCGACTCGGACGGCTC 62.540 72.222 0.00 0.00 0.00 4.70
533 567 3.930012 GATTCGGGAGCGGGGGAG 61.930 72.222 0.00 0.00 0.00 4.30
773 807 3.673867 GACGCGACGGTGAGGTACC 62.674 68.421 15.93 2.73 46.56 3.34
774 808 2.202401 GACGCGACGGTGAGGTAC 60.202 66.667 15.93 0.00 0.00 3.34
775 809 3.434319 GGACGCGACGGTGAGGTA 61.434 66.667 15.93 0.00 0.00 3.08
1194 1228 0.548031 GGATCATGTCCTTGAGCCCA 59.452 55.000 6.27 0.00 44.63 5.36
1272 1306 0.827925 TGAGCTCGAACCCAGTGACT 60.828 55.000 9.64 0.00 0.00 3.41
1278 1312 2.342279 CCGTTGAGCTCGAACCCA 59.658 61.111 4.86 0.00 0.00 4.51
1288 1322 0.535102 AACTGGGACTTGCCGTTGAG 60.535 55.000 0.00 0.00 37.63 3.02
1398 1432 1.493950 GCATCTTGTCCGCCTCATCG 61.494 60.000 0.00 0.00 0.00 3.84
1485 1519 5.816777 CAGCTTCTTATCCTTCTTCTCCTTG 59.183 44.000 0.00 0.00 0.00 3.61
1557 1594 2.290514 CCCATTCTCCAACTTCTCAGCA 60.291 50.000 0.00 0.00 0.00 4.41
1779 1816 4.700596 GCTAATCGCTGAATCAGTACAC 57.299 45.455 12.29 0.00 33.43 2.90
1944 1981 6.051717 GGACTCAATGATATGTGTTACAGCT 58.948 40.000 0.00 0.00 0.00 4.24
2073 2112 0.389391 ACTGGACCCGATGATAAGCG 59.611 55.000 0.00 0.00 0.00 4.68
2083 2122 0.741915 GCTAGAGAAGACTGGACCCG 59.258 60.000 0.00 0.00 0.00 5.28
2209 2343 3.560453 CCCCTCCGTTTCAAATTACCTCA 60.560 47.826 0.00 0.00 0.00 3.86
2223 2357 2.695147 CGTAAATTAGTACCCCCTCCGT 59.305 50.000 0.00 0.00 0.00 4.69
2243 2377 1.819632 GTCCCCTTAGGCATGCACG 60.820 63.158 21.36 3.91 34.51 5.34
2298 2432 3.820467 CCAAGATACAGTGGAAGTTGCAA 59.180 43.478 0.00 0.00 37.03 4.08
2338 2511 4.278170 TCACAGCCTTATTCAAACAGGTTG 59.722 41.667 0.00 0.00 42.89 3.77
2395 2568 9.657419 ATTGAAAACCATAGAAACCATTTGATC 57.343 29.630 0.00 0.00 0.00 2.92
2424 2597 2.171840 AGTGGCACAGTCGAGATTACT 58.828 47.619 21.41 0.00 37.51 2.24
2501 2674 2.601314 CTGTCATTTCGCGAATTCCGTA 59.399 45.455 24.05 6.76 41.15 4.02
2509 2682 1.418373 CACTCACTGTCATTTCGCGA 58.582 50.000 3.71 3.71 0.00 5.87
2514 2687 5.290493 TGTTCTACCACTCACTGTCATTT 57.710 39.130 0.00 0.00 0.00 2.32
2517 2690 4.955811 AATGTTCTACCACTCACTGTCA 57.044 40.909 0.00 0.00 0.00 3.58
2525 2698 1.073284 ACCGCCAAATGTTCTACCACT 59.927 47.619 0.00 0.00 0.00 4.00
2527 2700 1.072489 TGACCGCCAAATGTTCTACCA 59.928 47.619 0.00 0.00 0.00 3.25
2545 2718 6.539826 CCAGTGTCATGCTAAGATTAATGTGA 59.460 38.462 0.00 0.00 0.00 3.58
2555 2728 2.105006 ACTGCCAGTGTCATGCTAAG 57.895 50.000 0.00 0.00 0.00 2.18
2595 2768 6.310956 GCTTGACAGCATATCTATAGAAGCAG 59.689 42.308 20.44 16.59 46.49 4.24
2654 2827 2.887152 CCCAAAGGAGAAGGTGTGAAAG 59.113 50.000 0.00 0.00 33.47 2.62
2722 2895 3.736740 GCCCAAATGCCAAAGGTATAACG 60.737 47.826 0.00 0.00 0.00 3.18
2756 2930 9.806203 AGCTAAATACGTATGTACATTACAACA 57.194 29.630 14.77 0.00 42.76 3.33
2777 2951 7.880160 AATATGTACATCCAGCAAAAGCTAA 57.120 32.000 12.68 0.00 0.00 3.09
2834 3008 6.593382 GGCAGAAGTAGAATGATTATGGCTAG 59.407 42.308 0.00 0.00 37.62 3.42
2839 3013 6.294473 ACAGGGCAGAAGTAGAATGATTATG 58.706 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.