Multiple sequence alignment - TraesCS7B01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G355200 chr7B 100.000 3070 0 0 1 3070 614180350 614183419 0.000000e+00 5670.0
1 TraesCS7B01G355200 chr7B 95.783 332 12 2 1 332 470296342 470296013 4.510000e-148 534.0
2 TraesCS7B01G355200 chr7B 88.889 252 28 0 1573 1824 614181871 614182122 8.270000e-81 311.0
3 TraesCS7B01G355200 chr7B 88.889 252 28 0 1522 1773 614181922 614182173 8.270000e-81 311.0
4 TraesCS7B01G355200 chr7A 90.212 1931 117 29 389 2263 649420769 649422683 0.000000e+00 2453.0
5 TraesCS7B01G355200 chr7A 84.142 536 57 12 2545 3070 589432864 589433381 7.650000e-136 494.0
6 TraesCS7B01G355200 chr7A 83.364 535 62 11 2545 3070 589434629 589435145 1.290000e-128 470.0
7 TraesCS7B01G355200 chr7A 88.406 207 24 0 1522 1728 649422046 649422252 1.830000e-62 250.0
8 TraesCS7B01G355200 chr7A 87.562 201 25 0 1624 1824 649421944 649422144 1.840000e-57 233.0
9 TraesCS7B01G355200 chr4A 90.000 800 62 11 2286 3070 541177459 541176663 0.000000e+00 1018.0
10 TraesCS7B01G355200 chr4A 86.790 810 75 18 2286 3067 541174986 541175791 0.000000e+00 874.0
11 TraesCS7B01G355200 chr4A 95.870 339 13 1 1 339 744302751 744302414 5.790000e-152 547.0
12 TraesCS7B01G355200 chr3A 88.778 802 67 10 2286 3070 712658222 712659017 0.000000e+00 961.0
13 TraesCS7B01G355200 chr3A 94.493 345 17 2 1 345 378337310 378336968 5.830000e-147 531.0
14 TraesCS7B01G355200 chr3A 95.224 335 14 2 1 335 522043883 522044215 2.100000e-146 529.0
15 TraesCS7B01G355200 chr7D 86.712 888 58 22 392 1242 563830850 563829986 0.000000e+00 931.0
16 TraesCS7B01G355200 chr7D 90.909 638 39 9 1651 2283 563829342 563828719 0.000000e+00 839.0
17 TraesCS7B01G355200 chr7D 98.276 290 5 0 1303 1592 563829984 563829695 2.730000e-140 508.0
18 TraesCS7B01G355200 chr7D 90.400 125 12 0 1705 1829 563829339 563829215 6.810000e-37 165.0
19 TraesCS7B01G355200 chr7D 87.234 141 18 0 1528 1668 563829312 563829172 8.810000e-36 161.0
20 TraesCS7B01G355200 chr7D 89.552 67 3 3 1681 1745 563829759 563829695 7.060000e-12 82.4
21 TraesCS7B01G355200 chr5B 86.426 803 75 17 2286 3070 330907256 330906470 0.000000e+00 848.0
22 TraesCS7B01G355200 chr6D 87.363 728 62 16 2347 3070 445513376 445514077 0.000000e+00 808.0
23 TraesCS7B01G355200 chr1D 81.463 793 102 22 2286 3042 67819599 67820382 2.620000e-170 608.0
24 TraesCS7B01G355200 chr4B 95.509 334 12 2 1 334 662087749 662087419 5.830000e-147 531.0
25 TraesCS7B01G355200 chr2B 94.737 342 17 1 1 342 699181925 699181585 5.830000e-147 531.0
26 TraesCS7B01G355200 chr2B 94.985 339 14 3 1 339 640687469 640687134 2.100000e-146 529.0
27 TraesCS7B01G355200 chr2B 83.568 213 22 6 2286 2485 49592563 49592775 1.450000e-43 187.0
28 TraesCS7B01G355200 chrUn 94.477 344 16 3 1 343 344975310 344974969 7.540000e-146 527.0
29 TraesCS7B01G355200 chr5A 94.706 340 16 2 1 339 653659502 653659164 7.540000e-146 527.0
30 TraesCS7B01G355200 chr2D 83.133 581 67 14 2510 3070 492026225 492025656 4.570000e-138 501.0
31 TraesCS7B01G355200 chr1A 83.769 536 59 12 2545 3070 4723753 4724270 1.660000e-132 483.0
32 TraesCS7B01G355200 chr2A 83.714 350 40 11 2735 3070 718220793 718220447 6.390000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G355200 chr7B 614180350 614183419 3069 False 2097.333333 5670 92.592667 1 3070 3 chr7B.!!$F1 3069
1 TraesCS7B01G355200 chr7A 649420769 649422683 1914 False 978.666667 2453 88.726667 389 2263 3 chr7A.!!$F2 1874
2 TraesCS7B01G355200 chr7A 589432864 589435145 2281 False 482.000000 494 83.753000 2545 3070 2 chr7A.!!$F1 525
3 TraesCS7B01G355200 chr4A 541176663 541177459 796 True 1018.000000 1018 90.000000 2286 3070 1 chr4A.!!$R1 784
4 TraesCS7B01G355200 chr4A 541174986 541175791 805 False 874.000000 874 86.790000 2286 3067 1 chr4A.!!$F1 781
5 TraesCS7B01G355200 chr3A 712658222 712659017 795 False 961.000000 961 88.778000 2286 3070 1 chr3A.!!$F2 784
6 TraesCS7B01G355200 chr7D 563828719 563830850 2131 True 447.733333 931 90.513833 392 2283 6 chr7D.!!$R1 1891
7 TraesCS7B01G355200 chr5B 330906470 330907256 786 True 848.000000 848 86.426000 2286 3070 1 chr5B.!!$R1 784
8 TraesCS7B01G355200 chr6D 445513376 445514077 701 False 808.000000 808 87.363000 2347 3070 1 chr6D.!!$F1 723
9 TraesCS7B01G355200 chr1D 67819599 67820382 783 False 608.000000 608 81.463000 2286 3042 1 chr1D.!!$F1 756
10 TraesCS7B01G355200 chr2D 492025656 492026225 569 True 501.000000 501 83.133000 2510 3070 1 chr2D.!!$R1 560
11 TraesCS7B01G355200 chr1A 4723753 4724270 517 False 483.000000 483 83.769000 2545 3070 1 chr1A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.034896 TCAAACTCCACTTCCCGCTC 59.965 55.0 0.0 0.0 0.00 5.03 F
1636 2047 0.036388 ATGTCACCACCGTCCATGAC 60.036 55.0 0.0 0.0 41.51 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 2079 0.036388 GTCATGGACGGTGGTGACAT 60.036 55.000 10.49 0.0 46.14 3.06 R
2908 5190 1.004044 CAATCTCCCAGTGCAAGGTCT 59.996 52.381 5.78 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.455331 GCCATGATCTACAAACTAAAATTGC 57.545 36.000 0.00 0.00 0.00 3.56
25 26 6.476706 GCCATGATCTACAAACTAAAATTGCC 59.523 38.462 0.00 0.00 0.00 4.52
26 27 7.546358 CCATGATCTACAAACTAAAATTGCCA 58.454 34.615 0.00 0.00 0.00 4.92
27 28 7.489113 CCATGATCTACAAACTAAAATTGCCAC 59.511 37.037 0.00 0.00 0.00 5.01
28 29 7.517614 TGATCTACAAACTAAAATTGCCACA 57.482 32.000 0.00 0.00 0.00 4.17
29 30 8.121305 TGATCTACAAACTAAAATTGCCACAT 57.879 30.769 0.00 0.00 0.00 3.21
30 31 9.237187 TGATCTACAAACTAAAATTGCCACATA 57.763 29.630 0.00 0.00 0.00 2.29
31 32 9.722056 GATCTACAAACTAAAATTGCCACATAG 57.278 33.333 0.00 0.00 0.00 2.23
32 33 7.535139 TCTACAAACTAAAATTGCCACATAGC 58.465 34.615 0.00 0.00 0.00 2.97
33 34 6.095432 ACAAACTAAAATTGCCACATAGCA 57.905 33.333 0.00 0.00 42.17 3.49
45 46 6.885952 TGCCACATAGCAACTTTAGTTTAA 57.114 33.333 0.00 0.00 40.56 1.52
46 47 6.908825 TGCCACATAGCAACTTTAGTTTAAG 58.091 36.000 0.00 0.00 40.56 1.85
47 48 5.800438 GCCACATAGCAACTTTAGTTTAAGC 59.200 40.000 0.00 0.00 35.83 3.09
48 49 6.322491 CCACATAGCAACTTTAGTTTAAGCC 58.678 40.000 0.00 0.00 35.83 4.35
49 50 6.322491 CACATAGCAACTTTAGTTTAAGCCC 58.678 40.000 0.00 0.00 35.83 5.19
50 51 6.151144 CACATAGCAACTTTAGTTTAAGCCCT 59.849 38.462 0.00 0.00 35.83 5.19
51 52 7.335924 CACATAGCAACTTTAGTTTAAGCCCTA 59.664 37.037 0.00 0.00 35.83 3.53
52 53 8.053355 ACATAGCAACTTTAGTTTAAGCCCTAT 58.947 33.333 0.00 0.00 35.83 2.57
53 54 6.759497 AGCAACTTTAGTTTAAGCCCTATG 57.241 37.500 0.00 0.00 35.83 2.23
54 55 6.481643 AGCAACTTTAGTTTAAGCCCTATGA 58.518 36.000 0.00 0.00 35.83 2.15
55 56 6.374613 AGCAACTTTAGTTTAAGCCCTATGAC 59.625 38.462 0.00 0.00 35.83 3.06
56 57 6.150474 GCAACTTTAGTTTAAGCCCTATGACA 59.850 38.462 0.00 0.00 35.83 3.58
57 58 7.308951 GCAACTTTAGTTTAAGCCCTATGACAA 60.309 37.037 0.00 0.00 35.83 3.18
58 59 7.683437 ACTTTAGTTTAAGCCCTATGACAAC 57.317 36.000 0.00 0.00 0.00 3.32
59 60 7.459234 ACTTTAGTTTAAGCCCTATGACAACT 58.541 34.615 0.00 0.00 0.00 3.16
60 61 7.390718 ACTTTAGTTTAAGCCCTATGACAACTG 59.609 37.037 0.00 0.00 0.00 3.16
61 62 4.010349 AGTTTAAGCCCTATGACAACTGC 58.990 43.478 0.00 0.00 0.00 4.40
62 63 3.712016 TTAAGCCCTATGACAACTGCA 57.288 42.857 0.00 0.00 0.00 4.41
63 64 2.119801 AAGCCCTATGACAACTGCAG 57.880 50.000 13.48 13.48 0.00 4.41
64 65 0.987294 AGCCCTATGACAACTGCAGT 59.013 50.000 15.25 15.25 0.00 4.40
65 66 1.089920 GCCCTATGACAACTGCAGTG 58.910 55.000 22.49 16.62 0.00 3.66
66 67 1.611673 GCCCTATGACAACTGCAGTGT 60.612 52.381 22.49 19.77 0.00 3.55
67 68 2.354704 GCCCTATGACAACTGCAGTGTA 60.355 50.000 22.49 7.59 0.00 2.90
68 69 3.868369 GCCCTATGACAACTGCAGTGTAA 60.868 47.826 22.49 13.96 0.00 2.41
69 70 4.323417 CCCTATGACAACTGCAGTGTAAA 58.677 43.478 22.49 12.28 0.00 2.01
70 71 4.154195 CCCTATGACAACTGCAGTGTAAAC 59.846 45.833 22.49 10.99 0.00 2.01
71 72 4.754618 CCTATGACAACTGCAGTGTAAACA 59.245 41.667 22.49 16.07 0.00 2.83
72 73 5.412594 CCTATGACAACTGCAGTGTAAACAT 59.587 40.000 22.49 21.04 0.00 2.71
73 74 4.811555 TGACAACTGCAGTGTAAACATC 57.188 40.909 22.49 10.63 0.00 3.06
74 75 3.247411 TGACAACTGCAGTGTAAACATCG 59.753 43.478 22.49 3.30 0.00 3.84
75 76 3.202906 ACAACTGCAGTGTAAACATCGT 58.797 40.909 22.49 0.00 0.00 3.73
76 77 3.002246 ACAACTGCAGTGTAAACATCGTG 59.998 43.478 22.49 13.02 0.00 4.35
77 78 2.143122 ACTGCAGTGTAAACATCGTGG 58.857 47.619 20.97 0.00 0.00 4.94
78 79 2.143122 CTGCAGTGTAAACATCGTGGT 58.857 47.619 5.25 0.00 0.00 4.16
79 80 3.243941 ACTGCAGTGTAAACATCGTGGTA 60.244 43.478 20.97 0.00 0.00 3.25
80 81 3.729966 TGCAGTGTAAACATCGTGGTAA 58.270 40.909 0.00 0.00 0.00 2.85
81 82 3.495377 TGCAGTGTAAACATCGTGGTAAC 59.505 43.478 0.00 0.00 0.00 2.50
82 83 3.744426 GCAGTGTAAACATCGTGGTAACT 59.256 43.478 0.00 0.00 37.61 2.24
83 84 4.212636 GCAGTGTAAACATCGTGGTAACTT 59.787 41.667 0.00 0.00 37.61 2.66
84 85 5.614013 GCAGTGTAAACATCGTGGTAACTTC 60.614 44.000 0.00 0.00 37.61 3.01
85 86 5.694910 CAGTGTAAACATCGTGGTAACTTCT 59.305 40.000 0.00 0.00 37.61 2.85
86 87 5.694910 AGTGTAAACATCGTGGTAACTTCTG 59.305 40.000 0.00 0.00 37.61 3.02
87 88 4.992319 TGTAAACATCGTGGTAACTTCTGG 59.008 41.667 0.00 0.00 37.61 3.86
88 89 2.094762 ACATCGTGGTAACTTCTGGC 57.905 50.000 0.00 0.00 37.61 4.85
89 90 1.346395 ACATCGTGGTAACTTCTGGCA 59.654 47.619 0.00 0.00 37.61 4.92
90 91 2.224426 ACATCGTGGTAACTTCTGGCAA 60.224 45.455 0.00 0.00 37.61 4.52
91 92 2.623878 TCGTGGTAACTTCTGGCAAA 57.376 45.000 0.00 0.00 37.61 3.68
92 93 2.920524 TCGTGGTAACTTCTGGCAAAA 58.079 42.857 0.00 0.00 37.61 2.44
93 94 3.280295 TCGTGGTAACTTCTGGCAAAAA 58.720 40.909 0.00 0.00 37.61 1.94
119 120 7.953305 AAAATCGTCGAAACATATCAACATG 57.047 32.000 0.00 0.00 0.00 3.21
120 121 5.657470 ATCGTCGAAACATATCAACATGG 57.343 39.130 0.00 0.00 0.00 3.66
121 122 3.868661 TCGTCGAAACATATCAACATGGG 59.131 43.478 0.00 0.00 0.00 4.00
122 123 3.002246 CGTCGAAACATATCAACATGGGG 59.998 47.826 0.00 0.00 0.00 4.96
123 124 3.945285 GTCGAAACATATCAACATGGGGT 59.055 43.478 0.00 0.00 0.00 4.95
124 125 4.035208 GTCGAAACATATCAACATGGGGTC 59.965 45.833 0.00 0.00 0.00 4.46
125 126 4.080582 TCGAAACATATCAACATGGGGTCT 60.081 41.667 0.00 0.00 0.00 3.85
126 127 5.129650 TCGAAACATATCAACATGGGGTCTA 59.870 40.000 0.00 0.00 0.00 2.59
127 128 5.466728 CGAAACATATCAACATGGGGTCTAG 59.533 44.000 0.00 0.00 0.00 2.43
128 129 5.975988 AACATATCAACATGGGGTCTAGT 57.024 39.130 0.00 0.00 0.00 2.57
129 130 5.975988 ACATATCAACATGGGGTCTAGTT 57.024 39.130 0.00 0.00 0.00 2.24
130 131 6.327386 ACATATCAACATGGGGTCTAGTTT 57.673 37.500 0.00 0.00 0.00 2.66
131 132 6.731467 ACATATCAACATGGGGTCTAGTTTT 58.269 36.000 0.00 0.00 0.00 2.43
132 133 7.867921 ACATATCAACATGGGGTCTAGTTTTA 58.132 34.615 0.00 0.00 0.00 1.52
133 134 8.333235 ACATATCAACATGGGGTCTAGTTTTAA 58.667 33.333 0.00 0.00 0.00 1.52
134 135 9.184523 CATATCAACATGGGGTCTAGTTTTAAA 57.815 33.333 0.00 0.00 0.00 1.52
135 136 7.703058 ATCAACATGGGGTCTAGTTTTAAAG 57.297 36.000 0.00 0.00 0.00 1.85
136 137 6.843752 TCAACATGGGGTCTAGTTTTAAAGA 58.156 36.000 0.00 0.00 0.00 2.52
137 138 7.466804 TCAACATGGGGTCTAGTTTTAAAGAT 58.533 34.615 0.00 0.00 0.00 2.40
138 139 7.610305 TCAACATGGGGTCTAGTTTTAAAGATC 59.390 37.037 0.00 0.00 0.00 2.75
139 140 7.272144 ACATGGGGTCTAGTTTTAAAGATCT 57.728 36.000 0.00 0.00 0.00 2.75
140 141 7.339482 ACATGGGGTCTAGTTTTAAAGATCTC 58.661 38.462 0.00 0.00 0.00 2.75
141 142 5.974108 TGGGGTCTAGTTTTAAAGATCTCG 58.026 41.667 0.00 0.00 0.00 4.04
142 143 5.482878 TGGGGTCTAGTTTTAAAGATCTCGT 59.517 40.000 0.00 0.00 0.00 4.18
143 144 6.041511 GGGGTCTAGTTTTAAAGATCTCGTC 58.958 44.000 0.00 0.00 0.00 4.20
144 145 5.742926 GGGTCTAGTTTTAAAGATCTCGTCG 59.257 44.000 0.00 0.00 0.00 5.12
145 146 6.404074 GGGTCTAGTTTTAAAGATCTCGTCGA 60.404 42.308 0.00 0.00 0.00 4.20
146 147 6.687958 GGTCTAGTTTTAAAGATCTCGTCGAG 59.312 42.308 16.33 16.33 0.00 4.04
147 148 7.413877 GGTCTAGTTTTAAAGATCTCGTCGAGA 60.414 40.741 26.15 26.15 43.20 4.04
148 149 7.426169 GTCTAGTTTTAAAGATCTCGTCGAGAC 59.574 40.741 26.46 18.95 41.76 3.36
149 150 6.256912 AGTTTTAAAGATCTCGTCGAGACT 57.743 37.500 26.46 20.66 41.76 3.24
150 151 6.087522 AGTTTTAAAGATCTCGTCGAGACTG 58.912 40.000 26.46 0.00 41.76 3.51
151 152 5.874895 TTTAAAGATCTCGTCGAGACTGA 57.125 39.130 26.46 13.80 41.76 3.41
152 153 6.438259 TTTAAAGATCTCGTCGAGACTGAT 57.562 37.500 26.46 11.39 41.76 2.90
153 154 4.974368 AAAGATCTCGTCGAGACTGATT 57.026 40.909 26.46 15.73 41.76 2.57
154 155 4.974368 AAGATCTCGTCGAGACTGATTT 57.026 40.909 26.46 10.24 41.76 2.17
155 156 6.438259 AAAGATCTCGTCGAGACTGATTTA 57.562 37.500 26.46 2.70 41.76 1.40
156 157 6.438259 AAGATCTCGTCGAGACTGATTTAA 57.562 37.500 26.46 1.94 41.76 1.52
157 158 6.627395 AGATCTCGTCGAGACTGATTTAAT 57.373 37.500 26.46 7.98 41.76 1.40
158 159 6.434596 AGATCTCGTCGAGACTGATTTAATG 58.565 40.000 26.46 0.00 41.76 1.90
159 160 4.921547 TCTCGTCGAGACTGATTTAATGG 58.078 43.478 20.85 0.00 33.35 3.16
160 161 4.398358 TCTCGTCGAGACTGATTTAATGGT 59.602 41.667 20.85 0.00 33.35 3.55
161 162 4.421058 TCGTCGAGACTGATTTAATGGTG 58.579 43.478 1.56 0.00 0.00 4.17
162 163 4.157105 TCGTCGAGACTGATTTAATGGTGA 59.843 41.667 1.56 0.00 0.00 4.02
163 164 4.862574 CGTCGAGACTGATTTAATGGTGAA 59.137 41.667 1.56 0.00 0.00 3.18
164 165 5.347635 CGTCGAGACTGATTTAATGGTGAAA 59.652 40.000 1.56 0.00 0.00 2.69
165 166 6.128661 CGTCGAGACTGATTTAATGGTGAAAA 60.129 38.462 1.56 0.00 0.00 2.29
166 167 7.015877 GTCGAGACTGATTTAATGGTGAAAAC 58.984 38.462 0.00 0.00 0.00 2.43
167 168 6.015504 CGAGACTGATTTAATGGTGAAAACG 58.984 40.000 0.00 0.00 0.00 3.60
168 169 6.128661 CGAGACTGATTTAATGGTGAAAACGA 60.129 38.462 0.00 0.00 0.00 3.85
169 170 7.504924 AGACTGATTTAATGGTGAAAACGAA 57.495 32.000 0.00 0.00 0.00 3.85
170 171 8.110860 AGACTGATTTAATGGTGAAAACGAAT 57.889 30.769 0.00 0.00 0.00 3.34
171 172 8.576442 AGACTGATTTAATGGTGAAAACGAATT 58.424 29.630 0.00 0.00 0.00 2.17
172 173 9.191995 GACTGATTTAATGGTGAAAACGAATTT 57.808 29.630 0.00 0.00 0.00 1.82
173 174 9.541143 ACTGATTTAATGGTGAAAACGAATTTT 57.459 25.926 0.00 0.00 40.83 1.82
215 216 9.834628 TTTAGAAGATACAACATTTTTAAGCCG 57.165 29.630 0.00 0.00 0.00 5.52
216 217 7.681939 AGAAGATACAACATTTTTAAGCCGA 57.318 32.000 0.00 0.00 0.00 5.54
217 218 8.106247 AGAAGATACAACATTTTTAAGCCGAA 57.894 30.769 0.00 0.00 0.00 4.30
218 219 8.573035 AGAAGATACAACATTTTTAAGCCGAAA 58.427 29.630 0.00 0.00 0.00 3.46
219 220 9.187455 GAAGATACAACATTTTTAAGCCGAAAA 57.813 29.630 0.00 0.00 0.00 2.29
220 221 8.515473 AGATACAACATTTTTAAGCCGAAAAC 57.485 30.769 0.00 0.00 0.00 2.43
221 222 5.977171 ACAACATTTTTAAGCCGAAAACC 57.023 34.783 0.00 0.00 0.00 3.27
222 223 5.420409 ACAACATTTTTAAGCCGAAAACCA 58.580 33.333 0.00 0.00 0.00 3.67
223 224 5.875359 ACAACATTTTTAAGCCGAAAACCAA 59.125 32.000 0.00 0.00 0.00 3.67
224 225 6.371825 ACAACATTTTTAAGCCGAAAACCAAA 59.628 30.769 0.00 0.00 0.00 3.28
225 226 6.986904 ACATTTTTAAGCCGAAAACCAAAA 57.013 29.167 0.00 0.00 0.00 2.44
226 227 7.379098 ACATTTTTAAGCCGAAAACCAAAAA 57.621 28.000 0.00 0.00 31.65 1.94
252 253 8.515695 AAAATTCTGCTGATGTCATCTATTCA 57.484 30.769 13.90 5.77 0.00 2.57
253 254 8.693120 AAATTCTGCTGATGTCATCTATTCAT 57.307 30.769 13.90 0.00 0.00 2.57
254 255 9.788889 AAATTCTGCTGATGTCATCTATTCATA 57.211 29.630 13.90 0.00 0.00 2.15
255 256 8.774890 ATTCTGCTGATGTCATCTATTCATAC 57.225 34.615 13.90 0.00 0.00 2.39
256 257 6.385033 TCTGCTGATGTCATCTATTCATACG 58.615 40.000 13.90 0.00 0.00 3.06
257 258 6.015940 TCTGCTGATGTCATCTATTCATACGT 60.016 38.462 13.90 0.00 0.00 3.57
258 259 5.922544 TGCTGATGTCATCTATTCATACGTG 59.077 40.000 13.90 0.00 0.00 4.49
259 260 5.347093 GCTGATGTCATCTATTCATACGTGG 59.653 44.000 13.90 0.00 0.00 4.94
260 261 5.230182 TGATGTCATCTATTCATACGTGGC 58.770 41.667 13.90 0.00 0.00 5.01
261 262 4.664150 TGTCATCTATTCATACGTGGCA 57.336 40.909 0.00 0.00 0.00 4.92
262 263 5.017294 TGTCATCTATTCATACGTGGCAA 57.983 39.130 0.00 0.00 0.00 4.52
263 264 5.423886 TGTCATCTATTCATACGTGGCAAA 58.576 37.500 0.00 0.00 0.00 3.68
264 265 5.877564 TGTCATCTATTCATACGTGGCAAAA 59.122 36.000 0.00 0.00 0.00 2.44
265 266 6.542005 TGTCATCTATTCATACGTGGCAAAAT 59.458 34.615 0.00 0.00 0.00 1.82
266 267 7.713073 TGTCATCTATTCATACGTGGCAAAATA 59.287 33.333 0.00 0.00 0.00 1.40
267 268 8.556194 GTCATCTATTCATACGTGGCAAAATAA 58.444 33.333 0.00 0.00 0.00 1.40
268 269 8.773645 TCATCTATTCATACGTGGCAAAATAAG 58.226 33.333 0.00 0.00 0.00 1.73
269 270 8.559536 CATCTATTCATACGTGGCAAAATAAGT 58.440 33.333 0.00 0.00 0.00 2.24
270 271 7.915508 TCTATTCATACGTGGCAAAATAAGTG 58.084 34.615 0.00 0.00 0.00 3.16
271 272 4.955925 TCATACGTGGCAAAATAAGTGG 57.044 40.909 0.00 0.00 0.00 4.00
272 273 4.328536 TCATACGTGGCAAAATAAGTGGT 58.671 39.130 0.00 0.00 0.00 4.16
273 274 4.155099 TCATACGTGGCAAAATAAGTGGTG 59.845 41.667 0.00 0.00 0.00 4.17
274 275 2.577700 ACGTGGCAAAATAAGTGGTGA 58.422 42.857 0.00 0.00 0.00 4.02
275 276 3.153919 ACGTGGCAAAATAAGTGGTGAT 58.846 40.909 0.00 0.00 0.00 3.06
276 277 3.057596 ACGTGGCAAAATAAGTGGTGATG 60.058 43.478 0.00 0.00 0.00 3.07
277 278 3.673052 CGTGGCAAAATAAGTGGTGATGG 60.673 47.826 0.00 0.00 0.00 3.51
278 279 3.509575 GTGGCAAAATAAGTGGTGATGGA 59.490 43.478 0.00 0.00 0.00 3.41
279 280 3.763360 TGGCAAAATAAGTGGTGATGGAG 59.237 43.478 0.00 0.00 0.00 3.86
280 281 3.131046 GGCAAAATAAGTGGTGATGGAGG 59.869 47.826 0.00 0.00 0.00 4.30
281 282 3.429410 GCAAAATAAGTGGTGATGGAGGC 60.429 47.826 0.00 0.00 0.00 4.70
282 283 2.332063 AATAAGTGGTGATGGAGGCG 57.668 50.000 0.00 0.00 0.00 5.52
283 284 1.204146 ATAAGTGGTGATGGAGGCGT 58.796 50.000 0.00 0.00 0.00 5.68
284 285 0.249120 TAAGTGGTGATGGAGGCGTG 59.751 55.000 0.00 0.00 0.00 5.34
285 286 1.768684 AAGTGGTGATGGAGGCGTGT 61.769 55.000 0.00 0.00 0.00 4.49
286 287 2.034879 GTGGTGATGGAGGCGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
287 288 2.436646 GGTGATGGAGGCGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
288 289 2.436646 GTGATGGAGGCGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
289 290 4.408821 TGATGGAGGCGTGTGGGC 62.409 66.667 0.00 0.00 42.69 5.36
305 306 4.036804 GCGATGTGCAAACGCCCA 62.037 61.111 18.18 0.00 45.35 5.36
306 307 2.126888 CGATGTGCAAACGCCCAC 60.127 61.111 0.00 0.00 0.00 4.61
307 308 2.902419 CGATGTGCAAACGCCCACA 61.902 57.895 0.00 0.00 45.01 4.17
308 309 1.371635 GATGTGCAAACGCCCACAC 60.372 57.895 0.00 0.00 43.89 3.82
309 310 3.192954 ATGTGCAAACGCCCACACG 62.193 57.895 0.00 0.00 43.89 4.49
321 322 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
322 323 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
335 336 3.946621 GCGTTAGCATTTCCGAAAAAC 57.053 42.857 0.00 0.00 44.35 2.43
336 337 3.301706 GCGTTAGCATTTCCGAAAAACA 58.698 40.909 0.00 0.00 44.35 2.83
337 338 3.731717 GCGTTAGCATTTCCGAAAAACAA 59.268 39.130 0.00 0.00 44.35 2.83
338 339 4.207429 GCGTTAGCATTTCCGAAAAACAAA 59.793 37.500 0.00 0.00 44.35 2.83
339 340 5.276442 GCGTTAGCATTTCCGAAAAACAAAA 60.276 36.000 0.00 0.00 44.35 2.44
340 341 6.117542 CGTTAGCATTTCCGAAAAACAAAAC 58.882 36.000 0.00 2.46 0.00 2.43
341 342 6.237595 CGTTAGCATTTCCGAAAAACAAAACA 60.238 34.615 0.00 0.00 0.00 2.83
342 343 5.717038 AGCATTTCCGAAAAACAAAACAG 57.283 34.783 0.00 0.00 0.00 3.16
343 344 5.415221 AGCATTTCCGAAAAACAAAACAGA 58.585 33.333 0.00 0.00 0.00 3.41
344 345 5.519927 AGCATTTCCGAAAAACAAAACAGAG 59.480 36.000 0.00 0.00 0.00 3.35
345 346 5.727249 CATTTCCGAAAAACAAAACAGAGC 58.273 37.500 0.00 0.00 0.00 4.09
346 347 4.442375 TTCCGAAAAACAAAACAGAGCA 57.558 36.364 0.00 0.00 0.00 4.26
347 348 4.647424 TCCGAAAAACAAAACAGAGCAT 57.353 36.364 0.00 0.00 0.00 3.79
348 349 4.606961 TCCGAAAAACAAAACAGAGCATC 58.393 39.130 0.00 0.00 0.00 3.91
349 350 4.097135 TCCGAAAAACAAAACAGAGCATCA 59.903 37.500 0.00 0.00 37.82 3.07
350 351 4.984161 CCGAAAAACAAAACAGAGCATCAT 59.016 37.500 0.00 0.00 37.82 2.45
351 352 5.117592 CCGAAAAACAAAACAGAGCATCATC 59.882 40.000 0.00 0.00 37.82 2.92
352 353 5.164254 CGAAAAACAAAACAGAGCATCATCG 60.164 40.000 0.00 0.00 37.82 3.84
353 354 4.836125 AAACAAAACAGAGCATCATCGT 57.164 36.364 0.00 0.00 37.82 3.73
354 355 4.410492 AACAAAACAGAGCATCATCGTC 57.590 40.909 0.00 0.00 37.82 4.20
355 356 3.402110 ACAAAACAGAGCATCATCGTCA 58.598 40.909 0.00 0.00 37.82 4.35
356 357 3.814842 ACAAAACAGAGCATCATCGTCAA 59.185 39.130 0.00 0.00 37.82 3.18
357 358 4.456911 ACAAAACAGAGCATCATCGTCAAT 59.543 37.500 0.00 0.00 37.82 2.57
358 359 5.048504 ACAAAACAGAGCATCATCGTCAATT 60.049 36.000 0.00 0.00 37.82 2.32
359 360 5.633830 AAACAGAGCATCATCGTCAATTT 57.366 34.783 0.00 0.00 37.82 1.82
360 361 5.633830 AACAGAGCATCATCGTCAATTTT 57.366 34.783 0.00 0.00 37.82 1.82
361 362 5.227238 ACAGAGCATCATCGTCAATTTTC 57.773 39.130 0.00 0.00 37.82 2.29
362 363 4.095483 ACAGAGCATCATCGTCAATTTTCC 59.905 41.667 0.00 0.00 37.82 3.13
363 364 4.095334 CAGAGCATCATCGTCAATTTTCCA 59.905 41.667 0.00 0.00 37.82 3.53
364 365 4.095483 AGAGCATCATCGTCAATTTTCCAC 59.905 41.667 0.00 0.00 37.82 4.02
365 366 3.758023 AGCATCATCGTCAATTTTCCACA 59.242 39.130 0.00 0.00 0.00 4.17
366 367 3.853671 GCATCATCGTCAATTTTCCACAC 59.146 43.478 0.00 0.00 0.00 3.82
367 368 3.804518 TCATCGTCAATTTTCCACACG 57.195 42.857 0.00 0.00 0.00 4.49
368 369 3.394719 TCATCGTCAATTTTCCACACGA 58.605 40.909 0.00 0.00 43.15 4.35
369 370 3.810386 TCATCGTCAATTTTCCACACGAA 59.190 39.130 0.00 0.00 42.34 3.85
370 371 3.595709 TCGTCAATTTTCCACACGAAC 57.404 42.857 0.00 0.00 36.59 3.95
371 372 3.199677 TCGTCAATTTTCCACACGAACT 58.800 40.909 0.00 0.00 36.59 3.01
372 373 3.246699 TCGTCAATTTTCCACACGAACTC 59.753 43.478 0.00 0.00 36.59 3.01
373 374 3.001838 CGTCAATTTTCCACACGAACTCA 59.998 43.478 0.00 0.00 32.08 3.41
374 375 4.495019 CGTCAATTTTCCACACGAACTCAA 60.495 41.667 0.00 0.00 32.08 3.02
375 376 5.336744 GTCAATTTTCCACACGAACTCAAA 58.663 37.500 0.00 0.00 0.00 2.69
376 377 5.229260 GTCAATTTTCCACACGAACTCAAAC 59.771 40.000 0.00 0.00 0.00 2.93
377 378 5.124776 TCAATTTTCCACACGAACTCAAACT 59.875 36.000 0.00 0.00 0.00 2.66
378 379 4.609691 TTTTCCACACGAACTCAAACTC 57.390 40.909 0.00 0.00 0.00 3.01
379 380 2.234300 TCCACACGAACTCAAACTCC 57.766 50.000 0.00 0.00 0.00 3.85
380 381 1.483004 TCCACACGAACTCAAACTCCA 59.517 47.619 0.00 0.00 0.00 3.86
381 382 1.597663 CCACACGAACTCAAACTCCAC 59.402 52.381 0.00 0.00 0.00 4.02
382 383 2.550978 CACACGAACTCAAACTCCACT 58.449 47.619 0.00 0.00 0.00 4.00
383 384 2.936498 CACACGAACTCAAACTCCACTT 59.064 45.455 0.00 0.00 0.00 3.16
384 385 3.001330 CACACGAACTCAAACTCCACTTC 59.999 47.826 0.00 0.00 0.00 3.01
385 386 2.544267 CACGAACTCAAACTCCACTTCC 59.456 50.000 0.00 0.00 0.00 3.46
386 387 2.143925 CGAACTCAAACTCCACTTCCC 58.856 52.381 0.00 0.00 0.00 3.97
387 388 2.143925 GAACTCAAACTCCACTTCCCG 58.856 52.381 0.00 0.00 0.00 5.14
388 389 0.250338 ACTCAAACTCCACTTCCCGC 60.250 55.000 0.00 0.00 0.00 6.13
389 390 0.035458 CTCAAACTCCACTTCCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
390 391 0.034896 TCAAACTCCACTTCCCGCTC 59.965 55.000 0.00 0.00 0.00 5.03
449 450 0.521735 CGACCGAGGCATCATATCGA 59.478 55.000 9.51 0.00 38.72 3.59
510 511 1.139734 CCCCACGTCGACTCATCAG 59.860 63.158 14.70 0.00 0.00 2.90
515 517 1.313812 ACGTCGACTCATCAGTCCCC 61.314 60.000 14.70 0.00 45.81 4.81
559 568 0.105408 ACGCACGTACCCAACTTTCT 59.895 50.000 0.00 0.00 0.00 2.52
580 589 3.089788 GGGAAACCGTGTGTGTTCT 57.910 52.632 0.00 0.00 43.64 3.01
586 599 1.954146 CCGTGTGTGTTCTGACGGG 60.954 63.158 0.00 0.00 46.13 5.28
587 600 1.066752 CGTGTGTGTTCTGACGGGA 59.933 57.895 0.00 0.00 0.00 5.14
691 708 1.737793 GCGATTCGTCAAGGTTCCAAT 59.262 47.619 8.03 0.00 0.00 3.16
709 729 4.082523 CCGAGCGAGCCCCTGAAA 62.083 66.667 0.00 0.00 0.00 2.69
774 794 2.985847 GCCTTGGCGAACTTGGCT 60.986 61.111 3.37 0.00 40.36 4.75
818 838 1.317332 CGTCGTACGTAAAGTCGCAA 58.683 50.000 16.05 0.00 36.74 4.85
846 866 1.515954 GTTCAGCCCGGAAGATCGA 59.484 57.895 0.73 0.00 0.00 3.59
847 867 0.105039 GTTCAGCCCGGAAGATCGAT 59.895 55.000 0.73 0.00 0.00 3.59
875 916 2.163021 ATACCCCCAACCACCCTTGC 62.163 60.000 0.00 0.00 0.00 4.01
887 928 1.005215 CACCCTTGCCTCTTCCTCATT 59.995 52.381 0.00 0.00 0.00 2.57
897 938 1.208052 TCTTCCTCATTCCCAAGCTCG 59.792 52.381 0.00 0.00 0.00 5.03
951 995 0.236711 CAAAGTTGCACTGCTCGAGG 59.763 55.000 15.58 0.17 0.00 4.63
952 996 0.886490 AAAGTTGCACTGCTCGAGGG 60.886 55.000 15.58 0.00 0.00 4.30
964 1027 5.406780 CACTGCTCGAGGGTTGATATTTATC 59.593 44.000 15.58 0.00 0.00 1.75
996 1059 4.027437 AGGAACTACTCAGTGATCTTCCC 58.973 47.826 11.75 3.36 36.02 3.97
997 1060 3.133183 GGAACTACTCAGTGATCTTCCCC 59.867 52.174 0.00 0.00 34.36 4.81
1032 1095 2.365635 GGTCTGGCAGGGCTCCTA 60.366 66.667 15.73 0.00 29.64 2.94
1141 1204 3.403057 CGCTGAACACGTGGTCGG 61.403 66.667 33.45 33.45 41.02 4.79
1182 1245 1.077089 GCGACCAGCTCCGTAAGTTC 61.077 60.000 0.00 0.00 44.04 3.01
1183 1246 0.458025 CGACCAGCTCCGTAAGTTCC 60.458 60.000 0.00 0.00 0.00 3.62
1184 1247 0.606604 GACCAGCTCCGTAAGTTCCA 59.393 55.000 0.00 0.00 0.00 3.53
1185 1248 0.608640 ACCAGCTCCGTAAGTTCCAG 59.391 55.000 0.00 0.00 0.00 3.86
1186 1249 0.608640 CCAGCTCCGTAAGTTCCAGT 59.391 55.000 0.00 0.00 0.00 4.00
1206 1269 3.069946 ACGCCCGACCCAACGATA 61.070 61.111 0.00 0.00 35.09 2.92
1209 1272 1.067582 GCCCGACCCAACGATAGAG 59.932 63.158 0.00 0.00 41.38 2.43
1211 1274 1.067582 CCGACCCAACGATAGAGCC 59.932 63.158 0.00 0.00 41.38 4.70
1217 1280 1.404986 CCCAACGATAGAGCCAACGAA 60.405 52.381 0.00 0.00 41.38 3.85
1244 1310 4.001248 CCATGCATGGTGAACCGT 57.999 55.556 33.68 0.00 43.05 4.83
1252 1318 1.878953 ATGGTGAACCGTGAACTGAC 58.121 50.000 0.00 0.00 39.43 3.51
1253 1319 0.528901 TGGTGAACCGTGAACTGACG 60.529 55.000 0.00 0.00 39.43 4.35
1254 1320 0.249155 GGTGAACCGTGAACTGACGA 60.249 55.000 0.00 0.00 42.10 4.20
1255 1321 1.604693 GGTGAACCGTGAACTGACGAT 60.605 52.381 0.00 0.00 42.10 3.73
1256 1322 1.455786 GTGAACCGTGAACTGACGATG 59.544 52.381 0.00 0.00 42.10 3.84
1622 2033 3.445518 GATGCCGAGCCCGATGTCA 62.446 63.158 0.00 0.00 38.22 3.58
1625 2036 3.770040 CCGAGCCCGATGTCACCA 61.770 66.667 0.00 0.00 38.22 4.17
1628 2039 4.082523 AGCCCGATGTCACCACCG 62.083 66.667 0.00 0.00 0.00 4.94
1631 2042 2.125673 CCGATGTCACCACCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
1632 2043 2.654289 CGATGTCACCACCGTCCA 59.346 61.111 0.00 0.00 0.00 4.02
1633 2044 1.218047 CGATGTCACCACCGTCCAT 59.782 57.895 0.00 0.00 0.00 3.41
1634 2045 1.083806 CGATGTCACCACCGTCCATG 61.084 60.000 0.00 0.00 0.00 3.66
1635 2046 0.249120 GATGTCACCACCGTCCATGA 59.751 55.000 0.00 0.00 0.00 3.07
1636 2047 0.036388 ATGTCACCACCGTCCATGAC 60.036 55.000 0.00 0.00 41.51 3.06
1637 2048 1.369692 GTCACCACCGTCCATGACA 59.630 57.895 0.00 0.00 40.95 3.58
1638 2049 0.949105 GTCACCACCGTCCATGACAC 60.949 60.000 0.00 0.00 40.95 3.67
1639 2050 1.671054 CACCACCGTCCATGACACC 60.671 63.158 0.00 0.00 32.09 4.16
1640 2051 2.434185 CCACCGTCCATGACACCG 60.434 66.667 0.00 0.00 32.09 4.94
1641 2052 3.118454 CACCGTCCATGACACCGC 61.118 66.667 0.00 0.00 32.09 5.68
1642 2053 4.388499 ACCGTCCATGACACCGCC 62.388 66.667 0.00 0.00 32.09 6.13
1644 2055 4.735132 CGTCCATGACACCGCCGT 62.735 66.667 0.00 0.00 32.09 5.68
1645 2056 2.813908 GTCCATGACACCGCCGTC 60.814 66.667 0.00 0.00 36.40 4.79
1671 2082 4.552365 CGATGCCCAGCCCGATGT 62.552 66.667 0.00 0.00 0.00 3.06
1672 2083 2.592861 GATGCCCAGCCCGATGTC 60.593 66.667 0.00 0.00 0.00 3.06
1673 2084 3.405093 GATGCCCAGCCCGATGTCA 62.405 63.158 0.00 0.00 0.00 3.58
1674 2085 3.704231 ATGCCCAGCCCGATGTCAC 62.704 63.158 0.00 0.00 0.00 3.67
1676 2087 3.716195 CCCAGCCCGATGTCACCA 61.716 66.667 0.00 0.00 0.00 4.17
1677 2088 2.436646 CCAGCCCGATGTCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
1678 2089 2.436646 CAGCCCGATGTCACCACC 60.437 66.667 0.00 0.00 0.00 4.61
1679 2090 4.082523 AGCCCGATGTCACCACCG 62.083 66.667 0.00 0.00 0.00 4.94
1680 2091 4.388499 GCCCGATGTCACCACCGT 62.388 66.667 0.00 0.00 0.00 4.83
1681 2092 2.125673 CCCGATGTCACCACCGTC 60.126 66.667 0.00 0.00 0.00 4.79
1724 2135 4.552365 ATGCCCAGCCCGATGTCG 62.552 66.667 0.00 0.00 39.44 4.35
1749 2211 4.386951 CCATGACACCGCCGTCCA 62.387 66.667 0.00 0.00 34.88 4.02
1788 2250 0.475906 GATGTCCCCTCCTTCCATGG 59.524 60.000 4.97 4.97 0.00 3.66
1824 2286 4.284860 CGATGCCGAGCCCGATGA 62.285 66.667 0.00 0.00 38.22 2.92
1863 2325 4.760047 CAACCCCGGTCTCGCCAG 62.760 72.222 0.00 0.00 36.97 4.85
1868 2330 4.147449 CCGGTCTCGCCAGCATCA 62.147 66.667 0.00 0.00 36.97 3.07
1872 2334 4.147449 TCTCGCCAGCATCACCGG 62.147 66.667 0.00 0.00 0.00 5.28
2122 2585 2.223923 GCGAGATGCCACTCATACTCTT 60.224 50.000 7.75 0.00 37.76 2.85
2254 2720 3.879932 CGAAGGACCAAGAAACTTCAC 57.120 47.619 0.00 0.00 39.33 3.18
2259 2725 6.347725 CGAAGGACCAAGAAACTTCACTAATG 60.348 42.308 0.00 0.00 39.33 1.90
2264 2730 8.360390 GGACCAAGAAACTTCACTAATGAAAAT 58.640 33.333 0.00 0.00 44.28 1.82
2266 2732 9.750125 ACCAAGAAACTTCACTAATGAAAATTC 57.250 29.630 4.16 4.16 44.28 2.17
2284 2750 9.748708 TGAAAATTCATTAAACTTGGAACAGAG 57.251 29.630 0.00 0.00 33.11 3.35
2307 2773 1.613255 GGGCCGTCTCCAGAAATTCAA 60.613 52.381 0.00 0.00 0.00 2.69
2331 2797 2.001872 CCTGGGCGAAAATCAAAATGC 58.998 47.619 0.00 0.00 0.00 3.56
2336 2802 1.994916 CGAAAATCAAAATGCGGCCT 58.005 45.000 0.00 0.00 0.00 5.19
2350 2828 7.497925 AAATGCGGCCTAAAATTTTAAACAA 57.502 28.000 11.62 0.00 0.00 2.83
2500 2989 5.015733 CGTATCTCAAGTCGTTTTCATTGC 58.984 41.667 0.00 0.00 0.00 3.56
2531 3021 0.617935 TCATCACCTCCATCGGCAAA 59.382 50.000 0.00 0.00 0.00 3.68
2625 3118 7.147880 TGCATTATCATCACAACCATCATCAAA 60.148 33.333 0.00 0.00 0.00 2.69
2651 3144 7.928908 TTAACATCTGCAGTTTGATTTTCAC 57.071 32.000 21.00 0.00 0.00 3.18
2670 3163 4.340617 TCACAATTATGTTGGGGGTCTTC 58.659 43.478 0.00 0.00 37.82 2.87
2710 3203 4.207891 GGAACCTGTTAGAGATTGAGCA 57.792 45.455 0.00 0.00 0.00 4.26
2749 3242 3.874543 TGTTTCTTCTTACGCTTTGCAGA 59.125 39.130 0.00 0.00 0.00 4.26
2753 3246 1.144969 TCTTACGCTTTGCAGAACCG 58.855 50.000 0.00 0.00 0.00 4.44
2794 3289 9.689976 AATTCTACTAGACATGATGAAGATTCG 57.310 33.333 0.00 0.00 0.00 3.34
2812 3309 4.904253 TTCGGGAACAAAACCTAACAAG 57.096 40.909 0.00 0.00 0.00 3.16
2920 5202 5.695851 ACTGAAAATAAGACCTTGCACTG 57.304 39.130 0.00 0.00 0.00 3.66
2928 5210 1.004044 AGACCTTGCACTGGGAGATTG 59.996 52.381 9.44 0.00 0.00 2.67
2952 5253 0.034089 ATAGTTTGGCCTGGAGGTGC 60.034 55.000 3.32 0.00 37.57 5.01
3042 5345 5.571791 TGATCAGCAATGGGATTAGATCA 57.428 39.130 0.00 0.00 38.33 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.476706 GGCAATTTTAGTTTGTAGATCATGGC 59.523 38.462 0.00 0.00 0.00 4.40
1 2 7.489113 GTGGCAATTTTAGTTTGTAGATCATGG 59.511 37.037 0.00 0.00 0.00 3.66
2 3 8.028354 TGTGGCAATTTTAGTTTGTAGATCATG 58.972 33.333 0.00 0.00 0.00 3.07
3 4 8.121305 TGTGGCAATTTTAGTTTGTAGATCAT 57.879 30.769 0.00 0.00 0.00 2.45
4 5 7.517614 TGTGGCAATTTTAGTTTGTAGATCA 57.482 32.000 0.00 0.00 0.00 2.92
5 6 9.722056 CTATGTGGCAATTTTAGTTTGTAGATC 57.278 33.333 0.00 0.00 0.00 2.75
6 7 8.190784 GCTATGTGGCAATTTTAGTTTGTAGAT 58.809 33.333 0.00 0.00 0.00 1.98
7 8 7.175816 TGCTATGTGGCAATTTTAGTTTGTAGA 59.824 33.333 0.00 0.00 39.43 2.59
8 9 7.312154 TGCTATGTGGCAATTTTAGTTTGTAG 58.688 34.615 0.00 0.00 39.43 2.74
9 10 7.220741 TGCTATGTGGCAATTTTAGTTTGTA 57.779 32.000 0.00 0.00 39.43 2.41
10 11 6.095432 TGCTATGTGGCAATTTTAGTTTGT 57.905 33.333 0.00 0.00 39.43 2.83
22 23 6.569610 GCTTAAACTAAAGTTGCTATGTGGCA 60.570 38.462 0.00 0.00 38.44 4.92
23 24 5.800438 GCTTAAACTAAAGTTGCTATGTGGC 59.200 40.000 0.00 0.00 38.44 5.01
24 25 6.322491 GGCTTAAACTAAAGTTGCTATGTGG 58.678 40.000 0.00 0.00 38.44 4.17
25 26 6.151144 AGGGCTTAAACTAAAGTTGCTATGTG 59.849 38.462 0.00 0.00 38.44 3.21
26 27 6.246163 AGGGCTTAAACTAAAGTTGCTATGT 58.754 36.000 0.00 0.00 38.44 2.29
27 28 6.759497 AGGGCTTAAACTAAAGTTGCTATG 57.241 37.500 0.00 0.00 38.44 2.23
28 29 8.272173 TCATAGGGCTTAAACTAAAGTTGCTAT 58.728 33.333 0.00 0.00 38.44 2.97
29 30 7.551617 GTCATAGGGCTTAAACTAAAGTTGCTA 59.448 37.037 0.00 0.00 38.44 3.49
30 31 6.374613 GTCATAGGGCTTAAACTAAAGTTGCT 59.625 38.462 0.00 0.00 38.44 3.91
31 32 6.150474 TGTCATAGGGCTTAAACTAAAGTTGC 59.850 38.462 0.00 0.00 38.44 4.17
32 33 7.681939 TGTCATAGGGCTTAAACTAAAGTTG 57.318 36.000 0.00 0.00 38.44 3.16
33 34 7.942894 AGTTGTCATAGGGCTTAAACTAAAGTT 59.057 33.333 0.00 0.00 40.50 2.66
34 35 7.390718 CAGTTGTCATAGGGCTTAAACTAAAGT 59.609 37.037 0.00 0.00 0.00 2.66
35 36 7.626452 GCAGTTGTCATAGGGCTTAAACTAAAG 60.626 40.741 0.00 0.00 0.00 1.85
36 37 6.150474 GCAGTTGTCATAGGGCTTAAACTAAA 59.850 38.462 0.00 0.00 0.00 1.85
37 38 5.646360 GCAGTTGTCATAGGGCTTAAACTAA 59.354 40.000 0.00 0.00 0.00 2.24
38 39 5.183228 GCAGTTGTCATAGGGCTTAAACTA 58.817 41.667 0.00 0.00 0.00 2.24
39 40 4.010349 GCAGTTGTCATAGGGCTTAAACT 58.990 43.478 0.00 0.00 0.00 2.66
40 41 3.756434 TGCAGTTGTCATAGGGCTTAAAC 59.244 43.478 0.00 0.00 0.00 2.01
41 42 4.009675 CTGCAGTTGTCATAGGGCTTAAA 58.990 43.478 5.25 0.00 0.00 1.52
42 43 3.009033 ACTGCAGTTGTCATAGGGCTTAA 59.991 43.478 15.25 0.00 0.00 1.85
43 44 2.571653 ACTGCAGTTGTCATAGGGCTTA 59.428 45.455 15.25 0.00 0.00 3.09
44 45 1.352352 ACTGCAGTTGTCATAGGGCTT 59.648 47.619 15.25 0.00 0.00 4.35
45 46 0.987294 ACTGCAGTTGTCATAGGGCT 59.013 50.000 15.25 0.00 0.00 5.19
46 47 1.089920 CACTGCAGTTGTCATAGGGC 58.910 55.000 18.94 0.00 0.00 5.19
47 48 2.479566 ACACTGCAGTTGTCATAGGG 57.520 50.000 18.94 4.96 0.00 3.53
48 49 4.754618 TGTTTACACTGCAGTTGTCATAGG 59.245 41.667 18.94 5.76 0.00 2.57
49 50 5.922739 TGTTTACACTGCAGTTGTCATAG 57.077 39.130 18.94 6.59 0.00 2.23
50 51 5.120053 CGATGTTTACACTGCAGTTGTCATA 59.880 40.000 18.94 8.19 0.00 2.15
51 52 4.083855 CGATGTTTACACTGCAGTTGTCAT 60.084 41.667 18.94 16.54 0.00 3.06
52 53 3.247411 CGATGTTTACACTGCAGTTGTCA 59.753 43.478 18.94 12.90 0.00 3.58
53 54 3.247648 ACGATGTTTACACTGCAGTTGTC 59.752 43.478 18.94 7.93 0.00 3.18
54 55 3.002246 CACGATGTTTACACTGCAGTTGT 59.998 43.478 18.94 19.98 0.00 3.32
55 56 3.544651 CACGATGTTTACACTGCAGTTG 58.455 45.455 18.94 15.15 0.00 3.16
56 57 2.548057 CCACGATGTTTACACTGCAGTT 59.452 45.455 18.94 11.49 0.00 3.16
57 58 2.143122 CCACGATGTTTACACTGCAGT 58.857 47.619 15.25 15.25 0.00 4.40
58 59 2.143122 ACCACGATGTTTACACTGCAG 58.857 47.619 13.48 13.48 0.00 4.41
59 60 2.248280 ACCACGATGTTTACACTGCA 57.752 45.000 0.00 0.00 0.00 4.41
60 61 3.744426 AGTTACCACGATGTTTACACTGC 59.256 43.478 0.00 0.00 0.00 4.40
61 62 5.694910 AGAAGTTACCACGATGTTTACACTG 59.305 40.000 0.00 0.00 0.00 3.66
62 63 5.694910 CAGAAGTTACCACGATGTTTACACT 59.305 40.000 0.00 0.00 0.00 3.55
63 64 5.107220 CCAGAAGTTACCACGATGTTTACAC 60.107 44.000 0.00 0.00 0.00 2.90
64 65 4.992319 CCAGAAGTTACCACGATGTTTACA 59.008 41.667 0.00 0.00 0.00 2.41
65 66 4.142966 GCCAGAAGTTACCACGATGTTTAC 60.143 45.833 0.00 0.00 0.00 2.01
66 67 3.998341 GCCAGAAGTTACCACGATGTTTA 59.002 43.478 0.00 0.00 0.00 2.01
67 68 2.812011 GCCAGAAGTTACCACGATGTTT 59.188 45.455 0.00 0.00 0.00 2.83
68 69 2.224426 TGCCAGAAGTTACCACGATGTT 60.224 45.455 0.00 0.00 0.00 2.71
69 70 1.346395 TGCCAGAAGTTACCACGATGT 59.654 47.619 0.00 0.00 0.00 3.06
70 71 2.093306 TGCCAGAAGTTACCACGATG 57.907 50.000 0.00 0.00 0.00 3.84
71 72 2.851263 TTGCCAGAAGTTACCACGAT 57.149 45.000 0.00 0.00 0.00 3.73
72 73 2.623878 TTTGCCAGAAGTTACCACGA 57.376 45.000 0.00 0.00 0.00 4.35
73 74 3.701532 TTTTTGCCAGAAGTTACCACG 57.298 42.857 0.00 0.00 0.00 4.94
94 95 7.484641 CCATGTTGATATGTTTCGACGATTTTT 59.515 33.333 0.00 0.00 33.42 1.94
95 96 6.966632 CCATGTTGATATGTTTCGACGATTTT 59.033 34.615 0.00 0.00 33.42 1.82
96 97 6.458206 CCCATGTTGATATGTTTCGACGATTT 60.458 38.462 0.00 0.00 33.42 2.17
97 98 5.007626 CCCATGTTGATATGTTTCGACGATT 59.992 40.000 0.00 0.00 33.42 3.34
98 99 4.511454 CCCATGTTGATATGTTTCGACGAT 59.489 41.667 0.00 0.00 33.42 3.73
99 100 3.868661 CCCATGTTGATATGTTTCGACGA 59.131 43.478 0.00 0.00 33.42 4.20
100 101 3.002246 CCCCATGTTGATATGTTTCGACG 59.998 47.826 0.00 0.00 33.42 5.12
101 102 3.945285 ACCCCATGTTGATATGTTTCGAC 59.055 43.478 0.00 0.00 0.00 4.20
102 103 4.080582 AGACCCCATGTTGATATGTTTCGA 60.081 41.667 0.00 0.00 0.00 3.71
103 104 4.199310 AGACCCCATGTTGATATGTTTCG 58.801 43.478 0.00 0.00 0.00 3.46
104 105 6.357367 ACTAGACCCCATGTTGATATGTTTC 58.643 40.000 0.00 0.00 0.00 2.78
105 106 6.327386 ACTAGACCCCATGTTGATATGTTT 57.673 37.500 0.00 0.00 0.00 2.83
106 107 5.975988 ACTAGACCCCATGTTGATATGTT 57.024 39.130 0.00 0.00 0.00 2.71
107 108 5.975988 AACTAGACCCCATGTTGATATGT 57.024 39.130 0.00 0.00 0.00 2.29
108 109 8.746052 TTAAAACTAGACCCCATGTTGATATG 57.254 34.615 0.00 0.00 0.00 1.78
109 110 9.408648 CTTTAAAACTAGACCCCATGTTGATAT 57.591 33.333 0.00 0.00 0.00 1.63
110 111 8.607713 TCTTTAAAACTAGACCCCATGTTGATA 58.392 33.333 0.00 0.00 0.00 2.15
111 112 7.466804 TCTTTAAAACTAGACCCCATGTTGAT 58.533 34.615 0.00 0.00 0.00 2.57
112 113 6.843752 TCTTTAAAACTAGACCCCATGTTGA 58.156 36.000 0.00 0.00 0.00 3.18
113 114 7.611855 AGATCTTTAAAACTAGACCCCATGTTG 59.388 37.037 0.00 0.00 0.00 3.33
114 115 7.699878 AGATCTTTAAAACTAGACCCCATGTT 58.300 34.615 0.00 0.00 0.00 2.71
115 116 7.272144 AGATCTTTAAAACTAGACCCCATGT 57.728 36.000 0.00 0.00 0.00 3.21
116 117 6.480320 CGAGATCTTTAAAACTAGACCCCATG 59.520 42.308 0.00 0.00 0.00 3.66
117 118 6.156429 ACGAGATCTTTAAAACTAGACCCCAT 59.844 38.462 0.00 0.00 0.00 4.00
118 119 5.482878 ACGAGATCTTTAAAACTAGACCCCA 59.517 40.000 0.00 0.00 0.00 4.96
119 120 5.975282 ACGAGATCTTTAAAACTAGACCCC 58.025 41.667 0.00 0.00 0.00 4.95
120 121 5.742926 CGACGAGATCTTTAAAACTAGACCC 59.257 44.000 0.00 0.00 0.00 4.46
121 122 6.549952 TCGACGAGATCTTTAAAACTAGACC 58.450 40.000 0.00 0.00 0.00 3.85
122 123 7.426169 GTCTCGACGAGATCTTTAAAACTAGAC 59.574 40.741 28.81 8.65 40.98 2.59
123 124 7.333921 AGTCTCGACGAGATCTTTAAAACTAGA 59.666 37.037 28.81 0.00 40.98 2.43
124 125 7.427030 CAGTCTCGACGAGATCTTTAAAACTAG 59.573 40.741 28.81 10.38 40.98 2.57
125 126 7.118825 TCAGTCTCGACGAGATCTTTAAAACTA 59.881 37.037 28.81 0.33 40.98 2.24
126 127 6.072618 TCAGTCTCGACGAGATCTTTAAAACT 60.073 38.462 28.81 15.92 40.98 2.66
127 128 6.084925 TCAGTCTCGACGAGATCTTTAAAAC 58.915 40.000 28.81 14.00 40.98 2.43
128 129 6.250344 TCAGTCTCGACGAGATCTTTAAAA 57.750 37.500 28.81 7.91 40.98 1.52
129 130 5.874895 TCAGTCTCGACGAGATCTTTAAA 57.125 39.130 28.81 9.33 40.98 1.52
130 131 6.438259 AATCAGTCTCGACGAGATCTTTAA 57.562 37.500 28.81 15.05 40.98 1.52
131 132 6.438259 AAATCAGTCTCGACGAGATCTTTA 57.562 37.500 28.81 17.01 40.98 1.85
132 133 4.974368 AATCAGTCTCGACGAGATCTTT 57.026 40.909 28.81 17.15 40.98 2.52
133 134 4.974368 AAATCAGTCTCGACGAGATCTT 57.026 40.909 28.81 16.71 40.98 2.40
134 135 6.434596 CATTAAATCAGTCTCGACGAGATCT 58.565 40.000 28.81 22.72 40.98 2.75
135 136 5.627367 CCATTAAATCAGTCTCGACGAGATC 59.373 44.000 28.81 21.10 40.98 2.75
136 137 5.067936 ACCATTAAATCAGTCTCGACGAGAT 59.932 40.000 28.81 15.14 40.98 2.75
137 138 4.398358 ACCATTAAATCAGTCTCGACGAGA 59.602 41.667 23.27 23.27 36.22 4.04
138 139 4.500837 CACCATTAAATCAGTCTCGACGAG 59.499 45.833 18.91 18.91 36.20 4.18
139 140 4.157105 TCACCATTAAATCAGTCTCGACGA 59.843 41.667 0.00 0.00 36.20 4.20
140 141 4.421058 TCACCATTAAATCAGTCTCGACG 58.579 43.478 0.00 0.00 36.20 5.12
141 142 6.721571 TTTCACCATTAAATCAGTCTCGAC 57.278 37.500 0.00 0.00 0.00 4.20
142 143 6.128661 CGTTTTCACCATTAAATCAGTCTCGA 60.129 38.462 0.00 0.00 0.00 4.04
143 144 6.015504 CGTTTTCACCATTAAATCAGTCTCG 58.984 40.000 0.00 0.00 0.00 4.04
144 145 7.129109 TCGTTTTCACCATTAAATCAGTCTC 57.871 36.000 0.00 0.00 0.00 3.36
145 146 7.504924 TTCGTTTTCACCATTAAATCAGTCT 57.495 32.000 0.00 0.00 0.00 3.24
146 147 8.742554 AATTCGTTTTCACCATTAAATCAGTC 57.257 30.769 0.00 0.00 0.00 3.51
147 148 9.541143 AAAATTCGTTTTCACCATTAAATCAGT 57.459 25.926 0.00 0.00 0.00 3.41
154 155 9.171701 CGAACTTAAAATTCGTTTTCACCATTA 57.828 29.630 11.56 0.00 43.08 1.90
155 156 7.168469 CCGAACTTAAAATTCGTTTTCACCATT 59.832 33.333 16.23 0.00 45.88 3.16
156 157 6.639279 CCGAACTTAAAATTCGTTTTCACCAT 59.361 34.615 16.23 0.00 45.88 3.55
157 158 5.972382 CCGAACTTAAAATTCGTTTTCACCA 59.028 36.000 16.23 0.00 45.88 4.17
158 159 5.972973 ACCGAACTTAAAATTCGTTTTCACC 59.027 36.000 16.23 0.00 45.88 4.02
159 160 7.440541 AACCGAACTTAAAATTCGTTTTCAC 57.559 32.000 16.23 0.00 45.88 3.18
160 161 8.463456 AAAACCGAACTTAAAATTCGTTTTCA 57.537 26.923 13.72 0.00 41.44 2.69
189 190 9.834628 CGGCTTAAAAATGTTGTATCTTCTAAA 57.165 29.630 0.00 0.00 0.00 1.85
190 191 9.221933 TCGGCTTAAAAATGTTGTATCTTCTAA 57.778 29.630 0.00 0.00 0.00 2.10
191 192 8.780846 TCGGCTTAAAAATGTTGTATCTTCTA 57.219 30.769 0.00 0.00 0.00 2.10
192 193 7.681939 TCGGCTTAAAAATGTTGTATCTTCT 57.318 32.000 0.00 0.00 0.00 2.85
193 194 8.736751 TTTCGGCTTAAAAATGTTGTATCTTC 57.263 30.769 0.00 0.00 0.00 2.87
194 195 8.974408 GTTTTCGGCTTAAAAATGTTGTATCTT 58.026 29.630 0.00 0.00 30.53 2.40
195 196 7.597369 GGTTTTCGGCTTAAAAATGTTGTATCT 59.403 33.333 0.00 0.00 30.53 1.98
196 197 7.382759 TGGTTTTCGGCTTAAAAATGTTGTATC 59.617 33.333 0.00 0.00 30.53 2.24
197 198 7.210873 TGGTTTTCGGCTTAAAAATGTTGTAT 58.789 30.769 0.00 0.00 30.53 2.29
198 199 6.570692 TGGTTTTCGGCTTAAAAATGTTGTA 58.429 32.000 0.00 0.00 30.53 2.41
199 200 5.420409 TGGTTTTCGGCTTAAAAATGTTGT 58.580 33.333 0.00 0.00 30.53 3.32
200 201 5.975410 TGGTTTTCGGCTTAAAAATGTTG 57.025 34.783 0.00 0.00 30.53 3.33
201 202 6.986904 TTTGGTTTTCGGCTTAAAAATGTT 57.013 29.167 0.00 0.00 30.53 2.71
202 203 6.986904 TTTTGGTTTTCGGCTTAAAAATGT 57.013 29.167 0.00 0.00 30.53 2.71
226 227 8.963725 TGAATAGATGACATCAGCAGAATTTTT 58.036 29.630 17.57 0.00 34.14 1.94
227 228 8.515695 TGAATAGATGACATCAGCAGAATTTT 57.484 30.769 17.57 0.00 34.14 1.82
228 229 8.693120 ATGAATAGATGACATCAGCAGAATTT 57.307 30.769 17.57 0.00 34.14 1.82
229 230 9.217278 GTATGAATAGATGACATCAGCAGAATT 57.783 33.333 17.57 6.94 34.14 2.17
230 231 7.544915 CGTATGAATAGATGACATCAGCAGAAT 59.455 37.037 17.57 6.51 34.14 2.40
231 232 6.865205 CGTATGAATAGATGACATCAGCAGAA 59.135 38.462 17.57 0.00 34.14 3.02
232 233 6.015940 ACGTATGAATAGATGACATCAGCAGA 60.016 38.462 17.57 4.54 34.14 4.26
233 234 6.089150 CACGTATGAATAGATGACATCAGCAG 59.911 42.308 17.57 2.12 34.14 4.24
234 235 5.922544 CACGTATGAATAGATGACATCAGCA 59.077 40.000 17.57 9.50 34.14 4.41
235 236 5.347093 CCACGTATGAATAGATGACATCAGC 59.653 44.000 17.57 4.42 0.00 4.26
236 237 5.347093 GCCACGTATGAATAGATGACATCAG 59.653 44.000 17.57 0.66 0.00 2.90
237 238 5.221422 TGCCACGTATGAATAGATGACATCA 60.221 40.000 17.57 4.35 0.00 3.07
238 239 5.230182 TGCCACGTATGAATAGATGACATC 58.770 41.667 7.39 7.39 0.00 3.06
239 240 5.213891 TGCCACGTATGAATAGATGACAT 57.786 39.130 0.00 0.00 0.00 3.06
240 241 4.664150 TGCCACGTATGAATAGATGACA 57.336 40.909 0.00 0.00 0.00 3.58
241 242 5.984233 TTTGCCACGTATGAATAGATGAC 57.016 39.130 0.00 0.00 0.00 3.06
242 243 8.669946 TTATTTTGCCACGTATGAATAGATGA 57.330 30.769 0.00 0.00 0.00 2.92
243 244 8.559536 ACTTATTTTGCCACGTATGAATAGATG 58.440 33.333 0.00 0.00 0.00 2.90
244 245 8.559536 CACTTATTTTGCCACGTATGAATAGAT 58.440 33.333 0.00 0.00 0.00 1.98
245 246 7.011950 CCACTTATTTTGCCACGTATGAATAGA 59.988 37.037 0.00 0.00 0.00 1.98
246 247 7.132213 CCACTTATTTTGCCACGTATGAATAG 58.868 38.462 0.00 0.00 0.00 1.73
247 248 6.600032 ACCACTTATTTTGCCACGTATGAATA 59.400 34.615 0.00 0.00 0.00 1.75
248 249 5.417580 ACCACTTATTTTGCCACGTATGAAT 59.582 36.000 0.00 0.00 0.00 2.57
249 250 4.762765 ACCACTTATTTTGCCACGTATGAA 59.237 37.500 0.00 0.00 0.00 2.57
250 251 4.155099 CACCACTTATTTTGCCACGTATGA 59.845 41.667 0.00 0.00 0.00 2.15
251 252 4.155099 TCACCACTTATTTTGCCACGTATG 59.845 41.667 0.00 0.00 0.00 2.39
252 253 4.328536 TCACCACTTATTTTGCCACGTAT 58.671 39.130 0.00 0.00 0.00 3.06
253 254 3.741249 TCACCACTTATTTTGCCACGTA 58.259 40.909 0.00 0.00 0.00 3.57
254 255 2.577700 TCACCACTTATTTTGCCACGT 58.422 42.857 0.00 0.00 0.00 4.49
255 256 3.500982 CATCACCACTTATTTTGCCACG 58.499 45.455 0.00 0.00 0.00 4.94
256 257 3.509575 TCCATCACCACTTATTTTGCCAC 59.490 43.478 0.00 0.00 0.00 5.01
257 258 3.763360 CTCCATCACCACTTATTTTGCCA 59.237 43.478 0.00 0.00 0.00 4.92
258 259 3.131046 CCTCCATCACCACTTATTTTGCC 59.869 47.826 0.00 0.00 0.00 4.52
259 260 3.429410 GCCTCCATCACCACTTATTTTGC 60.429 47.826 0.00 0.00 0.00 3.68
260 261 3.181497 CGCCTCCATCACCACTTATTTTG 60.181 47.826 0.00 0.00 0.00 2.44
261 262 3.016736 CGCCTCCATCACCACTTATTTT 58.983 45.455 0.00 0.00 0.00 1.82
262 263 2.026262 ACGCCTCCATCACCACTTATTT 60.026 45.455 0.00 0.00 0.00 1.40
263 264 1.559682 ACGCCTCCATCACCACTTATT 59.440 47.619 0.00 0.00 0.00 1.40
264 265 1.134401 CACGCCTCCATCACCACTTAT 60.134 52.381 0.00 0.00 0.00 1.73
265 266 0.249120 CACGCCTCCATCACCACTTA 59.751 55.000 0.00 0.00 0.00 2.24
266 267 1.003355 CACGCCTCCATCACCACTT 60.003 57.895 0.00 0.00 0.00 3.16
267 268 2.217038 ACACGCCTCCATCACCACT 61.217 57.895 0.00 0.00 0.00 4.00
268 269 2.034879 CACACGCCTCCATCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
269 270 2.347114 CACACGCCTCCATCACCA 59.653 61.111 0.00 0.00 0.00 4.17
270 271 2.436646 CCACACGCCTCCATCACC 60.437 66.667 0.00 0.00 0.00 4.02
271 272 2.436646 CCCACACGCCTCCATCAC 60.437 66.667 0.00 0.00 0.00 3.06
272 273 4.408821 GCCCACACGCCTCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
277 278 4.760047 ACATCGCCCACACGCCTC 62.760 66.667 0.00 0.00 0.00 4.70
281 282 2.902419 TTTGCACATCGCCCACACG 61.902 57.895 0.00 0.00 41.33 4.49
282 283 1.371635 GTTTGCACATCGCCCACAC 60.372 57.895 0.00 0.00 41.33 3.82
283 284 2.902419 CGTTTGCACATCGCCCACA 61.902 57.895 0.00 0.00 41.33 4.17
284 285 2.126888 CGTTTGCACATCGCCCAC 60.127 61.111 0.00 0.00 41.33 4.61
285 286 4.036804 GCGTTTGCACATCGCCCA 62.037 61.111 15.37 0.00 43.41 5.36
294 295 3.882013 CACGTGTGGGCGTTTGCA 61.882 61.111 7.58 0.00 43.83 4.08
295 296 3.883180 ACACGTGTGGGCGTTTGC 61.883 61.111 22.71 0.00 43.83 3.68
296 297 2.024022 CACACGTGTGGGCGTTTG 59.976 61.111 35.65 12.14 43.83 2.93
308 309 0.179200 GAAATGCTAACGCCCACACG 60.179 55.000 0.00 0.00 39.50 4.49
309 310 0.170339 GGAAATGCTAACGCCCACAC 59.830 55.000 0.00 0.00 34.43 3.82
310 311 1.302383 CGGAAATGCTAACGCCCACA 61.302 55.000 0.00 0.00 34.43 4.17
311 312 1.022451 TCGGAAATGCTAACGCCCAC 61.022 55.000 0.00 0.00 34.43 4.61
312 313 0.321741 TTCGGAAATGCTAACGCCCA 60.322 50.000 0.00 0.00 34.43 5.36
313 314 0.806241 TTTCGGAAATGCTAACGCCC 59.194 50.000 0.00 0.00 34.43 6.13
314 315 2.622546 TTTTCGGAAATGCTAACGCC 57.377 45.000 3.67 0.00 34.43 5.68
315 316 3.301706 TGTTTTTCGGAAATGCTAACGC 58.698 40.909 3.67 0.00 0.00 4.84
316 317 5.874892 TTTGTTTTTCGGAAATGCTAACG 57.125 34.783 3.67 0.00 0.00 3.18
317 318 6.994992 TGTTTTGTTTTTCGGAAATGCTAAC 58.005 32.000 3.67 6.43 0.00 2.34
318 319 7.036220 TCTGTTTTGTTTTTCGGAAATGCTAA 58.964 30.769 3.67 1.68 0.00 3.09
319 320 6.565234 TCTGTTTTGTTTTTCGGAAATGCTA 58.435 32.000 3.67 0.00 0.00 3.49
320 321 5.415221 TCTGTTTTGTTTTTCGGAAATGCT 58.585 33.333 3.67 0.00 0.00 3.79
321 322 5.710613 TCTGTTTTGTTTTTCGGAAATGC 57.289 34.783 3.67 1.42 0.00 3.56
322 323 5.290643 TGCTCTGTTTTGTTTTTCGGAAATG 59.709 36.000 3.67 0.00 0.00 2.32
323 324 5.415221 TGCTCTGTTTTGTTTTTCGGAAAT 58.585 33.333 3.67 0.00 0.00 2.17
324 325 4.810790 TGCTCTGTTTTGTTTTTCGGAAA 58.189 34.783 0.00 0.00 0.00 3.13
325 326 4.442375 TGCTCTGTTTTGTTTTTCGGAA 57.558 36.364 0.00 0.00 0.00 4.30
326 327 4.097135 TGATGCTCTGTTTTGTTTTTCGGA 59.903 37.500 0.00 0.00 0.00 4.55
327 328 4.358851 TGATGCTCTGTTTTGTTTTTCGG 58.641 39.130 0.00 0.00 0.00 4.30
328 329 5.164254 CGATGATGCTCTGTTTTGTTTTTCG 60.164 40.000 0.00 0.00 0.00 3.46
329 330 5.687285 ACGATGATGCTCTGTTTTGTTTTTC 59.313 36.000 0.00 0.00 0.00 2.29
330 331 5.591099 ACGATGATGCTCTGTTTTGTTTTT 58.409 33.333 0.00 0.00 0.00 1.94
331 332 5.186996 ACGATGATGCTCTGTTTTGTTTT 57.813 34.783 0.00 0.00 0.00 2.43
332 333 4.275689 TGACGATGATGCTCTGTTTTGTTT 59.724 37.500 0.00 0.00 0.00 2.83
333 334 3.814842 TGACGATGATGCTCTGTTTTGTT 59.185 39.130 0.00 0.00 0.00 2.83
334 335 3.402110 TGACGATGATGCTCTGTTTTGT 58.598 40.909 0.00 0.00 0.00 2.83
335 336 4.408993 TTGACGATGATGCTCTGTTTTG 57.591 40.909 0.00 0.00 0.00 2.44
336 337 5.633830 AATTGACGATGATGCTCTGTTTT 57.366 34.783 0.00 0.00 0.00 2.43
337 338 5.633830 AAATTGACGATGATGCTCTGTTT 57.366 34.783 0.00 0.00 0.00 2.83
338 339 5.392380 GGAAAATTGACGATGATGCTCTGTT 60.392 40.000 0.00 0.00 0.00 3.16
339 340 4.095483 GGAAAATTGACGATGATGCTCTGT 59.905 41.667 0.00 0.00 0.00 3.41
340 341 4.095334 TGGAAAATTGACGATGATGCTCTG 59.905 41.667 0.00 0.00 0.00 3.35
341 342 4.095483 GTGGAAAATTGACGATGATGCTCT 59.905 41.667 0.00 0.00 0.00 4.09
342 343 4.142622 TGTGGAAAATTGACGATGATGCTC 60.143 41.667 0.00 0.00 0.00 4.26
343 344 3.758023 TGTGGAAAATTGACGATGATGCT 59.242 39.130 0.00 0.00 0.00 3.79
344 345 3.853671 GTGTGGAAAATTGACGATGATGC 59.146 43.478 0.00 0.00 0.00 3.91
345 346 4.090729 CGTGTGGAAAATTGACGATGATG 58.909 43.478 0.00 0.00 31.71 3.07
346 347 4.000325 TCGTGTGGAAAATTGACGATGAT 59.000 39.130 0.00 0.00 34.32 2.45
347 348 3.394719 TCGTGTGGAAAATTGACGATGA 58.605 40.909 0.00 0.00 34.32 2.92
348 349 3.804518 TCGTGTGGAAAATTGACGATG 57.195 42.857 0.00 0.00 34.32 3.84
349 350 3.813166 AGTTCGTGTGGAAAATTGACGAT 59.187 39.130 0.00 0.00 38.71 3.73
350 351 3.199677 AGTTCGTGTGGAAAATTGACGA 58.800 40.909 0.00 0.00 36.14 4.20
351 352 3.001838 TGAGTTCGTGTGGAAAATTGACG 59.998 43.478 0.00 0.00 36.14 4.35
352 353 4.545823 TGAGTTCGTGTGGAAAATTGAC 57.454 40.909 0.00 0.00 36.14 3.18
353 354 5.124776 AGTTTGAGTTCGTGTGGAAAATTGA 59.875 36.000 0.00 0.00 36.14 2.57
354 355 5.339990 AGTTTGAGTTCGTGTGGAAAATTG 58.660 37.500 0.00 0.00 36.14 2.32
355 356 5.449999 GGAGTTTGAGTTCGTGTGGAAAATT 60.450 40.000 0.00 0.00 36.14 1.82
356 357 4.036380 GGAGTTTGAGTTCGTGTGGAAAAT 59.964 41.667 0.00 0.00 36.14 1.82
357 358 3.375922 GGAGTTTGAGTTCGTGTGGAAAA 59.624 43.478 0.00 0.00 36.14 2.29
358 359 2.940410 GGAGTTTGAGTTCGTGTGGAAA 59.060 45.455 0.00 0.00 36.14 3.13
359 360 2.093394 TGGAGTTTGAGTTCGTGTGGAA 60.093 45.455 0.00 0.00 0.00 3.53
360 361 1.483004 TGGAGTTTGAGTTCGTGTGGA 59.517 47.619 0.00 0.00 0.00 4.02
361 362 1.597663 GTGGAGTTTGAGTTCGTGTGG 59.402 52.381 0.00 0.00 0.00 4.17
362 363 2.550978 AGTGGAGTTTGAGTTCGTGTG 58.449 47.619 0.00 0.00 0.00 3.82
363 364 2.981859 AGTGGAGTTTGAGTTCGTGT 57.018 45.000 0.00 0.00 0.00 4.49
364 365 2.544267 GGAAGTGGAGTTTGAGTTCGTG 59.456 50.000 0.00 0.00 0.00 4.35
365 366 2.484947 GGGAAGTGGAGTTTGAGTTCGT 60.485 50.000 0.00 0.00 0.00 3.85
366 367 2.143925 GGGAAGTGGAGTTTGAGTTCG 58.856 52.381 0.00 0.00 0.00 3.95
367 368 2.143925 CGGGAAGTGGAGTTTGAGTTC 58.856 52.381 0.00 0.00 0.00 3.01
368 369 1.814248 GCGGGAAGTGGAGTTTGAGTT 60.814 52.381 0.00 0.00 0.00 3.01
369 370 0.250338 GCGGGAAGTGGAGTTTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
370 371 0.035458 AGCGGGAAGTGGAGTTTGAG 59.965 55.000 0.00 0.00 0.00 3.02
371 372 0.034896 GAGCGGGAAGTGGAGTTTGA 59.965 55.000 0.00 0.00 0.00 2.69
372 373 0.955919 GGAGCGGGAAGTGGAGTTTG 60.956 60.000 0.00 0.00 0.00 2.93
373 374 1.128188 AGGAGCGGGAAGTGGAGTTT 61.128 55.000 0.00 0.00 0.00 2.66
374 375 1.536662 AGGAGCGGGAAGTGGAGTT 60.537 57.895 0.00 0.00 0.00 3.01
375 376 1.985116 GAGGAGCGGGAAGTGGAGT 60.985 63.158 0.00 0.00 0.00 3.85
376 377 2.896443 GAGGAGCGGGAAGTGGAG 59.104 66.667 0.00 0.00 0.00 3.86
377 378 3.068691 CGAGGAGCGGGAAGTGGA 61.069 66.667 0.00 0.00 36.03 4.02
386 387 1.883084 GTATGTTGGCCGAGGAGCG 60.883 63.158 0.00 0.00 40.47 5.03
387 388 0.811616 CTGTATGTTGGCCGAGGAGC 60.812 60.000 0.00 0.00 0.00 4.70
388 389 0.824109 TCTGTATGTTGGCCGAGGAG 59.176 55.000 0.00 0.00 0.00 3.69
389 390 0.535335 GTCTGTATGTTGGCCGAGGA 59.465 55.000 0.00 0.00 0.00 3.71
390 391 0.249120 TGTCTGTATGTTGGCCGAGG 59.751 55.000 0.00 0.00 0.00 4.63
466 467 4.293648 CCACCGCACACAGGTCGA 62.294 66.667 0.00 0.00 40.59 4.20
471 472 3.349006 GCTGTCCACCGCACACAG 61.349 66.667 0.00 0.00 40.53 3.66
543 545 1.425412 CGGAGAAAGTTGGGTACGTG 58.575 55.000 0.00 0.00 0.00 4.49
548 557 0.848053 TTTCCCGGAGAAAGTTGGGT 59.152 50.000 0.73 0.00 39.60 4.51
575 584 1.469335 GGTGTCCTCCCGTCAGAACA 61.469 60.000 0.00 0.00 0.00 3.18
774 794 2.745100 CCTCGTCGACCACTCGGA 60.745 66.667 10.58 0.00 40.58 4.55
818 838 1.678970 GGGCTGAACGCAAGGGAAT 60.679 57.895 0.00 0.00 46.39 3.01
835 855 0.030773 TGAAGCGATCGATCTTCCGG 59.969 55.000 21.57 8.23 38.26 5.14
846 866 2.375146 GTTGGGGGTATTTGAAGCGAT 58.625 47.619 0.00 0.00 0.00 4.58
847 867 1.614850 GGTTGGGGGTATTTGAAGCGA 60.615 52.381 0.00 0.00 0.00 4.93
875 916 1.563410 AGCTTGGGAATGAGGAAGAGG 59.437 52.381 0.00 0.00 0.00 3.69
887 928 4.329545 GGTGTGGCGAGCTTGGGA 62.330 66.667 2.37 0.00 0.00 4.37
951 995 7.715249 TCCTAACTGCACTGATAAATATCAACC 59.285 37.037 4.78 0.00 41.72 3.77
952 996 8.662781 TCCTAACTGCACTGATAAATATCAAC 57.337 34.615 4.78 0.00 41.72 3.18
964 1027 4.021894 ACTGAGTAGTTCCTAACTGCACTG 60.022 45.833 9.94 9.56 45.20 3.66
996 1059 2.202797 CGAGGACTCGCCATGTGG 60.203 66.667 8.93 0.00 46.50 4.17
1141 1204 3.324035 GATGAACCGCATCCTCGC 58.676 61.111 0.00 0.00 46.23 5.03
1242 1308 2.032894 AGCAAAACATCGTCAGTTCACG 60.033 45.455 0.00 0.00 41.36 4.35
1244 1310 3.248363 CAGAGCAAAACATCGTCAGTTCA 59.752 43.478 0.00 0.00 0.00 3.18
1245 1311 3.248602 ACAGAGCAAAACATCGTCAGTTC 59.751 43.478 0.00 0.00 0.00 3.01
1246 1312 3.206150 ACAGAGCAAAACATCGTCAGTT 58.794 40.909 0.00 0.00 0.00 3.16
1247 1313 2.838736 ACAGAGCAAAACATCGTCAGT 58.161 42.857 0.00 0.00 0.00 3.41
1610 2021 2.125106 GGTGGTGACATCGGGCTC 60.125 66.667 0.00 0.00 46.14 4.70
1622 2033 2.747686 GGTGTCATGGACGGTGGT 59.252 61.111 0.00 0.00 34.95 4.16
1625 2036 4.388499 GGCGGTGTCATGGACGGT 62.388 66.667 0.00 0.00 34.95 4.83
1628 2039 2.813908 GACGGCGGTGTCATGGAC 60.814 66.667 13.24 0.00 38.75 4.02
1631 2042 3.490759 GCTGACGGCGGTGTCATG 61.491 66.667 13.24 1.88 46.98 3.07
1632 2043 4.760047 GGCTGACGGCGGTGTCAT 62.760 66.667 13.24 0.00 46.98 3.06
1654 2065 4.552365 ACATCGGGCTGGGCATCG 62.552 66.667 0.00 0.00 0.00 3.84
1655 2066 2.592861 GACATCGGGCTGGGCATC 60.593 66.667 0.00 0.00 0.00 3.91
1656 2067 3.410628 TGACATCGGGCTGGGCAT 61.411 61.111 0.00 0.00 0.00 4.40
1657 2068 4.408821 GTGACATCGGGCTGGGCA 62.409 66.667 0.00 0.00 0.00 5.36
1659 2070 3.716195 TGGTGACATCGGGCTGGG 61.716 66.667 0.00 0.00 33.40 4.45
1660 2071 2.436646 GTGGTGACATCGGGCTGG 60.437 66.667 0.00 0.00 46.14 4.85
1661 2072 2.436646 GGTGGTGACATCGGGCTG 60.437 66.667 0.00 0.00 46.14 4.85
1667 2078 0.249120 TCATGGACGGTGGTGACATC 59.751 55.000 0.00 0.00 46.14 3.06
1668 2079 0.036388 GTCATGGACGGTGGTGACAT 60.036 55.000 10.49 0.00 46.14 3.06
1669 2080 1.369692 GTCATGGACGGTGGTGACA 59.630 57.895 10.49 0.00 40.41 3.58
1670 2081 0.949105 GTGTCATGGACGGTGGTGAC 60.949 60.000 9.11 9.11 40.93 3.67
1671 2082 1.369692 GTGTCATGGACGGTGGTGA 59.630 57.895 0.00 0.00 34.95 4.02
1672 2083 1.671054 GGTGTCATGGACGGTGGTG 60.671 63.158 0.00 0.00 34.95 4.17
1673 2084 2.747686 GGTGTCATGGACGGTGGT 59.252 61.111 0.00 0.00 34.95 4.16
1674 2085 2.434185 CGGTGTCATGGACGGTGG 60.434 66.667 0.00 0.00 34.95 4.61
1675 2086 3.118454 GCGGTGTCATGGACGGTG 61.118 66.667 0.00 0.00 34.95 4.94
1676 2087 4.388499 GGCGGTGTCATGGACGGT 62.388 66.667 0.00 0.00 34.95 4.83
1678 2089 4.735132 ACGGCGGTGTCATGGACG 62.735 66.667 13.24 0.30 34.95 4.79
1679 2090 2.813908 GACGGCGGTGTCATGGAC 60.814 66.667 13.24 0.00 38.75 4.02
1680 2091 4.077184 GGACGGCGGTGTCATGGA 62.077 66.667 13.24 0.00 40.72 3.41
1724 2135 3.134127 GGTGTCATGGAAGGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
1727 2189 3.134127 GGCGGTGTCATGGAAGGC 61.134 66.667 0.00 0.00 0.00 4.35
1855 2317 4.147449 CCGGTGATGCTGGCGAGA 62.147 66.667 0.00 0.00 36.72 4.04
1863 2325 4.408821 TGGACCTGCCGGTGATGC 62.409 66.667 3.79 0.00 45.73 3.91
1872 2334 4.803426 CGACGGAGCTGGACCTGC 62.803 72.222 15.18 15.18 0.00 4.85
2060 2522 5.753721 AAGGAAAGAACACTCAGATAGCT 57.246 39.130 0.00 0.00 0.00 3.32
2142 2605 9.386010 AGCGGAAAACAAATAGTATTACATACA 57.614 29.630 0.00 0.00 38.21 2.29
2146 2609 6.655848 ACCAGCGGAAAACAAATAGTATTACA 59.344 34.615 0.00 0.00 0.00 2.41
2147 2610 6.964934 CACCAGCGGAAAACAAATAGTATTAC 59.035 38.462 0.00 0.00 0.00 1.89
2148 2611 6.879993 TCACCAGCGGAAAACAAATAGTATTA 59.120 34.615 0.00 0.00 0.00 0.98
2149 2612 5.708230 TCACCAGCGGAAAACAAATAGTATT 59.292 36.000 1.50 0.00 0.00 1.89
2150 2613 5.250200 TCACCAGCGGAAAACAAATAGTAT 58.750 37.500 1.50 0.00 0.00 2.12
2151 2614 4.643463 TCACCAGCGGAAAACAAATAGTA 58.357 39.130 1.50 0.00 0.00 1.82
2152 2615 3.482436 TCACCAGCGGAAAACAAATAGT 58.518 40.909 1.50 0.00 0.00 2.12
2153 2616 4.497473 TTCACCAGCGGAAAACAAATAG 57.503 40.909 1.50 0.00 0.00 1.73
2259 2725 8.703336 GCTCTGTTCCAAGTTTAATGAATTTTC 58.297 33.333 0.00 0.00 0.00 2.29
2264 2730 5.241506 CCTGCTCTGTTCCAAGTTTAATGAA 59.758 40.000 0.00 0.00 0.00 2.57
2266 2732 4.082571 CCCTGCTCTGTTCCAAGTTTAATG 60.083 45.833 0.00 0.00 0.00 1.90
2270 2736 1.986882 CCCTGCTCTGTTCCAAGTTT 58.013 50.000 0.00 0.00 0.00 2.66
2283 2749 4.704103 TCTGGAGACGGCCCTGCT 62.704 66.667 0.00 0.00 36.33 4.24
2284 2750 2.543067 ATTTCTGGAGACGGCCCTGC 62.543 60.000 0.00 0.00 36.33 4.85
2439 2921 8.038351 GCAATCCCTTTACCTTTTTAGCATTAA 58.962 33.333 0.00 0.00 0.00 1.40
2475 2957 6.234213 CAATGAAAACGACTTGAGATACGTC 58.766 40.000 0.00 0.00 38.00 4.34
2481 2963 5.297547 ACTAGCAATGAAAACGACTTGAGA 58.702 37.500 0.00 0.00 0.00 3.27
2500 2989 6.410942 TGGAGGTGATGATGTTGATACTAG 57.589 41.667 0.00 0.00 0.00 2.57
2531 3021 4.385310 GCTAGTGAAGGGGTGATGGTAATT 60.385 45.833 0.00 0.00 0.00 1.40
2625 3118 8.981647 GTGAAAATCAAACTGCAGATGTTAATT 58.018 29.630 23.35 11.32 0.00 1.40
2651 3144 3.447229 GTGGAAGACCCCCAACATAATTG 59.553 47.826 0.00 0.00 35.12 2.32
2670 3163 5.770162 GGTTCCCTTGATAGATATTTGGTGG 59.230 44.000 0.00 0.00 0.00 4.61
2710 3203 9.129532 AGAAGAAACAAAAGACTTGAAGATGAT 57.870 29.630 0.00 0.00 0.00 2.45
2723 3216 5.514914 TGCAAAGCGTAAGAAGAAACAAAAG 59.485 36.000 0.00 0.00 43.02 2.27
2749 3242 3.644966 TTAGGAAGCATGAATCCGGTT 57.355 42.857 0.00 0.00 40.78 4.44
2753 3246 8.589338 TCTAGTAGAATTAGGAAGCATGAATCC 58.411 37.037 8.72 8.72 35.88 3.01
2794 3289 8.853126 ACTTATAACTTGTTAGGTTTTGTTCCC 58.147 33.333 0.00 0.00 0.00 3.97
2851 3350 3.644884 ATTCATCTAGCGACCGTTAGG 57.355 47.619 12.12 0.00 45.13 2.69
2908 5190 1.004044 CAATCTCCCAGTGCAAGGTCT 59.996 52.381 5.78 0.00 0.00 3.85
2920 5202 4.142160 GGCCAAACTATGTTTCAATCTCCC 60.142 45.833 0.00 0.00 0.00 4.30
2928 5210 2.755103 CCTCCAGGCCAAACTATGTTTC 59.245 50.000 5.01 0.00 0.00 2.78
3013 5316 2.028876 CCCATTGCTGATCATCTTGCA 58.971 47.619 3.41 3.41 0.00 4.08
3042 5345 2.434359 GCCGGCGCAGTTACTTCT 60.434 61.111 12.58 0.00 34.03 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.