Multiple sequence alignment - TraesCS7B01G355100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G355100 chr7B 100.000 2408 0 0 1 2408 613875400 613877807 0.000000e+00 4447.0
1 TraesCS7B01G355100 chr7B 88.177 609 48 10 1814 2408 613856362 613856960 0.000000e+00 704.0
2 TraesCS7B01G355100 chr7B 88.715 319 25 6 1625 1935 613803742 613804057 1.750000e-101 379.0
3 TraesCS7B01G355100 chr7B 89.498 219 17 3 1625 1838 613978329 613978546 3.050000e-69 272.0
4 TraesCS7B01G355100 chr7B 90.050 201 17 2 1625 1823 613835677 613835876 8.540000e-65 257.0
5 TraesCS7B01G355100 chr7B 81.690 213 37 1 672 884 613876017 613876227 2.460000e-40 176.0
6 TraesCS7B01G355100 chr7B 92.308 104 8 0 2305 2408 613978541 613978644 5.360000e-32 148.0
7 TraesCS7B01G355100 chr7B 91.000 100 7 1 1 100 613835270 613835367 1.500000e-27 134.0
8 TraesCS7B01G355100 chr6A 89.694 883 76 15 756 1628 522208308 522209185 0.000000e+00 1112.0
9 TraesCS7B01G355100 chr6A 87.291 598 39 14 218 811 522207888 522208452 0.000000e+00 649.0
10 TraesCS7B01G355100 chr6A 84.444 225 19 8 459 668 29611310 29611087 8.720000e-50 207.0
11 TraesCS7B01G355100 chr6A 85.567 97 7 3 1238 1329 385301406 385301500 7.090000e-16 95.3
12 TraesCS7B01G355100 chr6A 84.536 97 8 3 1238 1329 385293486 385293580 3.300000e-14 89.8
13 TraesCS7B01G355100 chr6B 89.121 910 70 13 720 1621 9468947 9469835 0.000000e+00 1105.0
14 TraesCS7B01G355100 chr6B 91.521 401 28 4 218 614 9461723 9462121 4.530000e-152 547.0
15 TraesCS7B01G355100 chr6B 93.706 143 6 3 671 811 9468985 9469126 6.740000e-51 211.0
16 TraesCS7B01G355100 chr4B 92.481 665 44 5 811 1470 665177907 665177244 0.000000e+00 946.0
17 TraesCS7B01G355100 chr4B 92.370 616 27 10 215 811 665178436 665177822 0.000000e+00 859.0
18 TraesCS7B01G355100 chr4B 92.469 239 15 3 218 454 583771965 583771728 2.970000e-89 339.0
19 TraesCS7B01G355100 chr7D 91.706 639 48 3 1774 2408 563956198 563955561 0.000000e+00 881.0
20 TraesCS7B01G355100 chr7D 87.156 763 70 14 1623 2376 563952216 563951473 0.000000e+00 841.0
21 TraesCS7B01G355100 chr7D 90.303 165 14 2 1625 1787 563956377 563956213 5.210000e-52 215.0
22 TraesCS7B01G355100 chr4A 84.868 793 63 25 218 967 539144257 539143479 0.000000e+00 747.0
23 TraesCS7B01G355100 chr4A 81.818 143 18 4 1192 1329 36979438 36979577 1.960000e-21 113.0
24 TraesCS7B01G355100 chr5A 84.299 535 52 22 218 746 446607778 446608286 5.980000e-136 494.0
25 TraesCS7B01G355100 chr5A 80.838 334 43 7 1004 1331 87180399 87180717 2.390000e-60 243.0
26 TraesCS7B01G355100 chr5A 89.286 168 18 0 643 810 446608683 446608850 6.740000e-51 211.0
27 TraesCS7B01G355100 chr6D 91.753 291 21 3 1332 1621 270594228 270593940 3.730000e-108 401.0
28 TraesCS7B01G355100 chr4D 91.034 290 24 2 1332 1621 454985398 454985111 8.070000e-105 390.0
29 TraesCS7B01G355100 chr3B 90.722 291 25 2 1332 1621 62979415 62979704 1.040000e-103 387.0
30 TraesCS7B01G355100 chr3B 90.083 242 23 1 218 458 62978146 62978387 1.800000e-81 313.0
31 TraesCS7B01G355100 chr3B 93.750 64 4 0 1004 1067 359999759 359999822 1.970000e-16 97.1
32 TraesCS7B01G355100 chr3D 92.830 265 18 1 1358 1621 268095906 268096170 1.350000e-102 383.0
33 TraesCS7B01G355100 chr3D 93.388 242 15 1 218 458 268071142 268071383 8.190000e-95 357.0
34 TraesCS7B01G355100 chr1D 90.034 291 27 2 1332 1621 220881473 220881762 2.260000e-100 375.0
35 TraesCS7B01G355100 chr7A 89.895 287 25 4 1337 1621 75201982 75202266 1.360000e-97 366.0
36 TraesCS7B01G355100 chr7A 89.474 266 20 4 2144 2408 649393213 649393471 1.780000e-86 329.0
37 TraesCS7B01G355100 chr2B 89.384 292 29 2 1332 1621 634155239 634154948 1.360000e-97 366.0
38 TraesCS7B01G355100 chr1A 86.103 331 37 5 1004 1329 438737633 438737959 4.930000e-92 348.0
39 TraesCS7B01G355100 chr1A 83.713 307 46 3 1004 1310 438745322 438745624 1.090000e-73 287.0
40 TraesCS7B01G355100 chr5D 89.669 242 24 1 218 458 511252215 511251974 8.360000e-80 307.0
41 TraesCS7B01G355100 chr1B 90.417 240 14 6 218 453 616092897 616093131 8.360000e-80 307.0
42 TraesCS7B01G355100 chr1B 80.508 118 17 4 778 895 38611926 38611815 4.270000e-13 86.1
43 TraesCS7B01G355100 chr2A 84.727 275 33 7 624 895 11351013 11351281 1.420000e-67 267.0
44 TraesCS7B01G355100 chr2A 78.852 331 39 12 1004 1329 316872830 316873134 6.790000e-46 195.0
45 TraesCS7B01G355100 chr3A 86.538 104 7 3 1231 1329 392155386 392155285 9.100000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G355100 chr7B 613875400 613877807 2407 False 2311.500000 4447 90.845000 1 2408 2 chr7B.!!$F4 2407
1 TraesCS7B01G355100 chr7B 613856362 613856960 598 False 704.000000 704 88.177000 1814 2408 1 chr7B.!!$F2 594
2 TraesCS7B01G355100 chr6A 522207888 522209185 1297 False 880.500000 1112 88.492500 218 1628 2 chr6A.!!$F3 1410
3 TraesCS7B01G355100 chr6B 9468947 9469835 888 False 658.000000 1105 91.413500 671 1621 2 chr6B.!!$F2 950
4 TraesCS7B01G355100 chr4B 665177244 665178436 1192 True 902.500000 946 92.425500 215 1470 2 chr4B.!!$R2 1255
5 TraesCS7B01G355100 chr7D 563951473 563956377 4904 True 645.666667 881 89.721667 1623 2408 3 chr7D.!!$R1 785
6 TraesCS7B01G355100 chr4A 539143479 539144257 778 True 747.000000 747 84.868000 218 967 1 chr4A.!!$R1 749
7 TraesCS7B01G355100 chr5A 446607778 446608850 1072 False 352.500000 494 86.792500 218 810 2 chr5A.!!$F2 592
8 TraesCS7B01G355100 chr3B 62978146 62979704 1558 False 350.000000 387 90.402500 218 1621 2 chr3B.!!$F2 1403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.039911 AGTTCTGGGGTCGTAGCTCT 59.96 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 2623 0.323957 GGGTCCCGCTTTTACTGACT 59.676 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.198890 TTTTTGCGTGCGCTGCCA 62.199 55.556 19.83 8.58 42.51 4.92
30 31 4.921847 TTTTGCGTGCGCTGCCAC 62.922 61.111 19.83 10.12 42.51 5.01
49 50 4.883354 GCAGCTGGGCCGGCTTAT 62.883 66.667 36.86 15.05 44.48 1.73
50 51 2.828868 CAGCTGGGCCGGCTTATA 59.171 61.111 36.86 9.31 44.48 0.98
51 52 1.302033 CAGCTGGGCCGGCTTATAG 60.302 63.158 36.86 21.81 44.48 1.31
52 53 2.669910 GCTGGGCCGGCTTATAGC 60.670 66.667 30.08 24.42 41.46 2.97
53 54 2.357517 CTGGGCCGGCTTATAGCG 60.358 66.667 28.56 4.21 43.62 4.26
54 55 4.619227 TGGGCCGGCTTATAGCGC 62.619 66.667 28.56 6.44 43.62 5.92
55 56 4.619227 GGGCCGGCTTATAGCGCA 62.619 66.667 28.56 0.00 43.62 6.09
56 57 3.346606 GGCCGGCTTATAGCGCAC 61.347 66.667 28.56 0.41 43.62 5.34
57 58 3.702555 GCCGGCTTATAGCGCACG 61.703 66.667 22.15 1.90 43.62 5.34
58 59 3.036084 CCGGCTTATAGCGCACGG 61.036 66.667 11.47 7.80 43.62 4.94
59 60 2.279252 CGGCTTATAGCGCACGGT 60.279 61.111 11.47 0.00 43.62 4.83
60 61 2.300787 CGGCTTATAGCGCACGGTC 61.301 63.158 11.47 0.00 43.62 4.79
61 62 2.300787 GGCTTATAGCGCACGGTCG 61.301 63.158 11.47 0.00 43.62 4.79
62 63 2.300787 GCTTATAGCGCACGGTCGG 61.301 63.158 11.47 0.00 0.00 4.79
63 64 2.278989 TTATAGCGCACGGTCGGC 60.279 61.111 11.47 0.00 0.00 5.54
64 65 3.778360 TTATAGCGCACGGTCGGCC 62.778 63.158 11.47 0.00 0.00 6.13
70 71 4.814294 GCACGGTCGGCCAGGTAG 62.814 72.222 6.96 0.00 34.09 3.18
71 72 4.814294 CACGGTCGGCCAGGTAGC 62.814 72.222 6.96 0.00 34.09 3.58
73 74 4.514577 CGGTCGGCCAGGTAGCTG 62.515 72.222 15.13 15.13 40.71 4.24
74 75 4.162690 GGTCGGCCAGGTAGCTGG 62.163 72.222 32.36 32.36 46.83 4.85
75 76 4.162690 GTCGGCCAGGTAGCTGGG 62.163 72.222 35.57 23.03 44.38 4.45
79 80 2.439156 GCCAGGTAGCTGGGCAAG 60.439 66.667 35.57 15.41 46.92 4.01
87 88 3.431725 GCTGGGCAAGCGTACCAC 61.432 66.667 0.00 0.00 43.45 4.16
88 89 2.031919 CTGGGCAAGCGTACCACA 59.968 61.111 0.00 0.00 0.00 4.17
89 90 2.281208 TGGGCAAGCGTACCACAC 60.281 61.111 0.00 0.00 0.00 3.82
90 91 2.032071 GGGCAAGCGTACCACACT 59.968 61.111 0.00 0.00 0.00 3.55
91 92 1.599797 GGGCAAGCGTACCACACTT 60.600 57.895 0.00 0.00 0.00 3.16
92 93 1.574428 GGCAAGCGTACCACACTTG 59.426 57.895 3.31 3.31 40.26 3.16
104 105 2.391616 CACACTTGGAGCTGCTATGA 57.608 50.000 6.82 0.00 0.00 2.15
105 106 2.277969 CACACTTGGAGCTGCTATGAG 58.722 52.381 6.82 3.08 0.00 2.90
106 107 1.209019 ACACTTGGAGCTGCTATGAGG 59.791 52.381 6.82 0.00 0.00 3.86
107 108 1.209019 CACTTGGAGCTGCTATGAGGT 59.791 52.381 6.82 0.00 0.00 3.85
108 109 1.209019 ACTTGGAGCTGCTATGAGGTG 59.791 52.381 6.82 0.00 0.00 4.00
109 110 1.209019 CTTGGAGCTGCTATGAGGTGT 59.791 52.381 6.82 0.00 0.00 4.16
110 111 0.826715 TGGAGCTGCTATGAGGTGTC 59.173 55.000 6.82 0.00 0.00 3.67
111 112 1.118838 GGAGCTGCTATGAGGTGTCT 58.881 55.000 0.15 0.00 0.00 3.41
112 113 1.068434 GGAGCTGCTATGAGGTGTCTC 59.932 57.143 0.15 0.00 40.36 3.36
124 125 5.047566 TGAGGTGTCTCAAAAGAAATGGA 57.952 39.130 0.00 0.00 46.08 3.41
125 126 5.065914 TGAGGTGTCTCAAAAGAAATGGAG 58.934 41.667 0.00 0.00 46.08 3.86
126 127 3.823304 AGGTGTCTCAAAAGAAATGGAGC 59.177 43.478 0.00 0.00 31.93 4.70
127 128 3.823304 GGTGTCTCAAAAGAAATGGAGCT 59.177 43.478 0.00 0.00 31.93 4.09
128 129 4.320788 GGTGTCTCAAAAGAAATGGAGCTG 60.321 45.833 0.00 0.00 31.93 4.24
129 130 3.254166 TGTCTCAAAAGAAATGGAGCTGC 59.746 43.478 0.00 0.00 31.93 5.25
130 131 2.821969 TCTCAAAAGAAATGGAGCTGCC 59.178 45.455 1.53 0.00 37.10 4.85
131 132 2.824341 CTCAAAAGAAATGGAGCTGCCT 59.176 45.455 1.53 0.00 37.63 4.75
132 133 3.233507 TCAAAAGAAATGGAGCTGCCTT 58.766 40.909 1.53 0.00 37.63 4.35
133 134 3.006110 TCAAAAGAAATGGAGCTGCCTTG 59.994 43.478 1.53 0.00 37.63 3.61
134 135 2.592102 AAGAAATGGAGCTGCCTTGA 57.408 45.000 1.53 0.00 37.63 3.02
135 136 2.125773 AGAAATGGAGCTGCCTTGAG 57.874 50.000 1.53 0.00 37.63 3.02
136 137 1.632409 AGAAATGGAGCTGCCTTGAGA 59.368 47.619 1.53 0.00 37.63 3.27
137 138 2.015587 GAAATGGAGCTGCCTTGAGAG 58.984 52.381 1.53 0.00 37.63 3.20
138 139 1.283347 AATGGAGCTGCCTTGAGAGA 58.717 50.000 1.53 0.00 37.63 3.10
139 140 0.831966 ATGGAGCTGCCTTGAGAGAG 59.168 55.000 1.53 0.00 37.63 3.20
140 141 0.251967 TGGAGCTGCCTTGAGAGAGA 60.252 55.000 1.53 0.00 37.63 3.10
141 142 0.461135 GGAGCTGCCTTGAGAGAGAG 59.539 60.000 0.00 0.00 0.00 3.20
142 143 1.473258 GAGCTGCCTTGAGAGAGAGA 58.527 55.000 0.00 0.00 0.00 3.10
143 144 1.134946 GAGCTGCCTTGAGAGAGAGAC 59.865 57.143 0.00 0.00 0.00 3.36
144 145 0.894141 GCTGCCTTGAGAGAGAGACA 59.106 55.000 0.00 0.00 0.00 3.41
145 146 1.135024 GCTGCCTTGAGAGAGAGACAG 60.135 57.143 0.00 0.00 0.00 3.51
146 147 1.477700 CTGCCTTGAGAGAGAGACAGG 59.522 57.143 0.00 0.00 0.00 4.00
147 148 1.203112 TGCCTTGAGAGAGAGACAGGT 60.203 52.381 0.00 0.00 0.00 4.00
148 149 1.204467 GCCTTGAGAGAGAGACAGGTG 59.796 57.143 0.00 0.00 0.00 4.00
149 150 1.204467 CCTTGAGAGAGAGACAGGTGC 59.796 57.143 0.00 0.00 0.00 5.01
150 151 1.891811 CTTGAGAGAGAGACAGGTGCA 59.108 52.381 0.00 0.00 0.00 4.57
151 152 2.228545 TGAGAGAGAGACAGGTGCAT 57.771 50.000 0.00 0.00 0.00 3.96
152 153 3.372440 TGAGAGAGAGACAGGTGCATA 57.628 47.619 0.00 0.00 0.00 3.14
153 154 3.286353 TGAGAGAGAGACAGGTGCATAG 58.714 50.000 0.00 0.00 0.00 2.23
154 155 3.287222 GAGAGAGAGACAGGTGCATAGT 58.713 50.000 0.00 0.00 0.00 2.12
155 156 3.699038 GAGAGAGAGACAGGTGCATAGTT 59.301 47.826 0.00 0.00 0.00 2.24
156 157 3.699038 AGAGAGAGACAGGTGCATAGTTC 59.301 47.826 0.00 0.00 0.00 3.01
157 158 3.699038 GAGAGAGACAGGTGCATAGTTCT 59.301 47.826 0.00 0.00 0.00 3.01
158 159 3.446873 AGAGAGACAGGTGCATAGTTCTG 59.553 47.826 0.00 0.00 0.00 3.02
159 160 2.499289 AGAGACAGGTGCATAGTTCTGG 59.501 50.000 0.00 0.00 0.00 3.86
160 161 1.556911 AGACAGGTGCATAGTTCTGGG 59.443 52.381 0.00 0.00 0.00 4.45
161 162 0.620556 ACAGGTGCATAGTTCTGGGG 59.379 55.000 0.00 0.00 0.00 4.96
162 163 0.620556 CAGGTGCATAGTTCTGGGGT 59.379 55.000 0.00 0.00 0.00 4.95
163 164 0.912486 AGGTGCATAGTTCTGGGGTC 59.088 55.000 0.00 0.00 0.00 4.46
164 165 0.462047 GGTGCATAGTTCTGGGGTCG 60.462 60.000 0.00 0.00 0.00 4.79
165 166 0.249398 GTGCATAGTTCTGGGGTCGT 59.751 55.000 0.00 0.00 0.00 4.34
166 167 1.479323 GTGCATAGTTCTGGGGTCGTA 59.521 52.381 0.00 0.00 0.00 3.43
167 168 1.754803 TGCATAGTTCTGGGGTCGTAG 59.245 52.381 0.00 0.00 0.00 3.51
168 169 1.538419 GCATAGTTCTGGGGTCGTAGC 60.538 57.143 0.00 0.00 0.00 3.58
169 170 2.032620 CATAGTTCTGGGGTCGTAGCT 58.967 52.381 0.00 0.00 0.00 3.32
170 171 1.760192 TAGTTCTGGGGTCGTAGCTC 58.240 55.000 0.00 0.00 0.00 4.09
171 172 0.039911 AGTTCTGGGGTCGTAGCTCT 59.960 55.000 0.00 0.00 0.00 4.09
172 173 0.173708 GTTCTGGGGTCGTAGCTCTG 59.826 60.000 0.00 0.00 0.00 3.35
173 174 0.251653 TTCTGGGGTCGTAGCTCTGT 60.252 55.000 0.00 0.00 0.00 3.41
174 175 0.622136 TCTGGGGTCGTAGCTCTGTA 59.378 55.000 0.00 0.00 0.00 2.74
175 176 1.214673 TCTGGGGTCGTAGCTCTGTAT 59.785 52.381 0.00 0.00 0.00 2.29
176 177 1.338337 CTGGGGTCGTAGCTCTGTATG 59.662 57.143 0.00 0.00 0.00 2.39
177 178 1.064240 TGGGGTCGTAGCTCTGTATGA 60.064 52.381 0.00 0.00 0.00 2.15
178 179 2.240279 GGGGTCGTAGCTCTGTATGAT 58.760 52.381 0.00 0.00 0.00 2.45
179 180 3.181437 TGGGGTCGTAGCTCTGTATGATA 60.181 47.826 0.00 0.00 0.00 2.15
180 181 3.825014 GGGGTCGTAGCTCTGTATGATAA 59.175 47.826 0.00 0.00 0.00 1.75
181 182 4.280174 GGGGTCGTAGCTCTGTATGATAAA 59.720 45.833 0.00 0.00 0.00 1.40
182 183 5.221130 GGGTCGTAGCTCTGTATGATAAAC 58.779 45.833 0.00 0.00 0.00 2.01
183 184 5.009811 GGGTCGTAGCTCTGTATGATAAACT 59.990 44.000 0.00 0.00 0.00 2.66
184 185 6.206243 GGGTCGTAGCTCTGTATGATAAACTA 59.794 42.308 0.00 0.00 0.00 2.24
185 186 7.299586 GGTCGTAGCTCTGTATGATAAACTAG 58.700 42.308 0.00 0.00 0.00 2.57
186 187 7.172875 GGTCGTAGCTCTGTATGATAAACTAGA 59.827 40.741 0.00 0.00 0.00 2.43
187 188 8.225107 GTCGTAGCTCTGTATGATAAACTAGAG 58.775 40.741 0.00 0.00 35.84 2.43
188 189 7.932491 TCGTAGCTCTGTATGATAAACTAGAGT 59.068 37.037 0.00 0.00 35.34 3.24
189 190 8.012809 CGTAGCTCTGTATGATAAACTAGAGTG 58.987 40.741 0.00 0.00 35.34 3.51
190 191 9.058174 GTAGCTCTGTATGATAAACTAGAGTGA 57.942 37.037 0.00 0.00 35.34 3.41
191 192 8.526667 AGCTCTGTATGATAAACTAGAGTGAA 57.473 34.615 0.00 0.00 35.34 3.18
192 193 9.142014 AGCTCTGTATGATAAACTAGAGTGAAT 57.858 33.333 0.00 0.00 35.34 2.57
193 194 9.757227 GCTCTGTATGATAAACTAGAGTGAATT 57.243 33.333 0.00 0.00 35.34 2.17
195 196 9.534565 TCTGTATGATAAACTAGAGTGAATTGC 57.465 33.333 0.00 0.00 0.00 3.56
196 197 9.317936 CTGTATGATAAACTAGAGTGAATTGCA 57.682 33.333 0.00 0.00 0.00 4.08
197 198 9.665719 TGTATGATAAACTAGAGTGAATTGCAA 57.334 29.630 0.00 0.00 0.00 4.08
265 266 2.937519 TGCAGGAACCACACATTTACA 58.062 42.857 0.00 0.00 0.00 2.41
376 380 3.833559 GGGGGTCCCATAAATGATGAT 57.166 47.619 10.98 0.00 44.65 2.45
440 444 0.405973 ACCAAAAGCTCCCTCCCTTC 59.594 55.000 0.00 0.00 0.00 3.46
457 463 4.351111 TCCCTTCTTAGAAAAGAGCCAACT 59.649 41.667 0.00 0.00 42.60 3.16
480 490 0.991920 GTTTCCATCTCCTCCCACCA 59.008 55.000 0.00 0.00 0.00 4.17
503 513 0.326048 ACTATGTCAGCTGGGCCTCT 60.326 55.000 15.13 0.00 0.00 3.69
781 1334 2.510238 CTGCTGCTGCTCCCGTAC 60.510 66.667 17.00 0.00 40.48 3.67
782 1335 4.435436 TGCTGCTGCTCCCGTACG 62.435 66.667 17.00 8.69 40.48 3.67
784 1337 2.202623 CTGCTGCTCCCGTACGTC 60.203 66.667 15.21 0.98 0.00 4.34
785 1338 4.111016 TGCTGCTCCCGTACGTCG 62.111 66.667 15.21 3.78 39.52 5.12
787 1340 2.099831 CTGCTCCCGTACGTCGTC 59.900 66.667 15.21 1.35 37.94 4.20
788 1341 3.713615 CTGCTCCCGTACGTCGTCG 62.714 68.421 15.21 5.70 43.34 5.12
790 1343 4.527157 CTCCCGTACGTCGTCGCC 62.527 72.222 15.21 0.00 41.18 5.54
836 1389 4.457496 GCTGCTGCTGCTCCCGTA 62.457 66.667 22.10 0.00 40.48 4.02
837 1390 2.265739 CTGCTGCTGCTCCCGTAA 59.734 61.111 17.00 0.00 40.48 3.18
838 1391 1.812922 CTGCTGCTGCTCCCGTAAG 60.813 63.158 17.00 0.00 40.48 2.34
839 1392 2.266055 GCTGCTGCTCCCGTAAGT 59.734 61.111 8.53 0.00 36.03 2.24
840 1393 1.811679 GCTGCTGCTCCCGTAAGTC 60.812 63.158 8.53 0.00 36.03 3.01
841 1394 1.517257 CTGCTGCTCCCGTAAGTCG 60.517 63.158 0.00 0.00 39.52 4.18
842 1395 2.214181 CTGCTGCTCCCGTAAGTCGT 62.214 60.000 0.00 0.00 37.94 4.34
843 1396 1.516603 GCTGCTCCCGTAAGTCGTC 60.517 63.158 0.00 0.00 37.94 4.20
844 1397 1.226323 CTGCTCCCGTAAGTCGTCG 60.226 63.158 0.00 0.00 37.94 5.12
845 1398 2.578981 GCTCCCGTAAGTCGTCGC 60.579 66.667 0.00 0.00 37.94 5.19
846 1399 2.101770 CTCCCGTAAGTCGTCGCC 59.898 66.667 0.00 0.00 37.94 5.54
847 1400 3.729906 CTCCCGTAAGTCGTCGCCG 62.730 68.421 0.00 0.00 37.94 6.46
849 1402 4.471726 CCGTAAGTCGTCGCCGCT 62.472 66.667 0.00 0.00 37.94 5.52
850 1403 3.238241 CGTAAGTCGTCGCCGCTG 61.238 66.667 0.00 0.00 34.52 5.18
851 1404 3.542742 GTAAGTCGTCGCCGCTGC 61.543 66.667 0.00 0.00 0.00 5.25
852 1405 3.744719 TAAGTCGTCGCCGCTGCT 61.745 61.111 0.00 0.00 34.43 4.24
853 1406 3.964221 TAAGTCGTCGCCGCTGCTG 62.964 63.158 0.00 0.00 34.43 4.41
998 1646 2.456287 GAACTCGAGCAGCAGGGGTT 62.456 60.000 13.61 0.86 0.00 4.11
1043 1723 0.387202 CAGATCGAAGCGAGGACCAT 59.613 55.000 0.00 0.00 39.91 3.55
1184 1864 4.467084 GTCCAGGAATGGGCGCGA 62.467 66.667 12.10 0.00 0.00 5.87
1355 2529 4.102649 GGACCCGATTGCTTTTATTTTCG 58.897 43.478 0.00 0.00 0.00 3.46
1368 2542 1.800229 ATTTTCGGGGCCAAGGACCT 61.800 55.000 11.57 0.00 44.51 3.85
1449 2623 2.203167 TGCCAACCGTTACGCCAA 60.203 55.556 0.00 0.00 0.00 4.52
1455 2629 0.105408 AACCGTTACGCCAAGTCAGT 59.895 50.000 0.00 0.00 0.00 3.41
1472 2647 1.210967 CAGTAAAAGCGGGACCCCATA 59.789 52.381 4.46 0.00 35.37 2.74
1504 2679 3.534554 ACTTAAAACGGTCCAAACGAGT 58.465 40.909 0.00 0.00 34.93 4.18
1514 2689 2.798847 GTCCAAACGAGTAACCAGTGTC 59.201 50.000 0.00 0.00 0.00 3.67
1562 2737 9.118300 AAATTAGTGATTTTTGGCACAATTTCA 57.882 25.926 0.00 0.00 35.24 2.69
1632 2808 9.554724 TTTTGCAATTCACTCGATAAACTAATC 57.445 29.630 0.00 0.00 0.00 1.75
1661 2838 5.065235 CCAATTTCCTGCAAAAAGGTCATT 58.935 37.500 0.00 0.00 38.58 2.57
1663 2840 6.880529 CCAATTTCCTGCAAAAAGGTCATTAT 59.119 34.615 0.00 0.00 38.58 1.28
1677 2854 5.556915 AGGTCATTATCTTCCAAAACGTCA 58.443 37.500 0.00 0.00 0.00 4.35
1697 2874 5.457799 CGTCACCGTACTTACCATAATTCTG 59.542 44.000 0.00 0.00 0.00 3.02
1711 2888 6.830838 ACCATAATTCTGGGAAGAAGACAATC 59.169 38.462 13.91 0.00 40.85 2.67
1712 2889 6.017605 CCATAATTCTGGGAAGAAGACAATCG 60.018 42.308 1.87 0.00 32.28 3.34
1765 2943 2.682856 TCACAAGACTTCAGTTTGGTGC 59.317 45.455 0.89 0.00 0.00 5.01
1769 2947 1.139058 AGACTTCAGTTTGGTGCTCGT 59.861 47.619 0.00 0.00 0.00 4.18
1780 2986 1.271325 TGGTGCTCGTCAACCATTCAT 60.271 47.619 2.42 0.00 0.00 2.57
1812 3018 1.035139 AATCAAGCAATCCCGATGCC 58.965 50.000 0.00 0.00 44.91 4.40
1854 3060 4.807304 CGTAAGAAAATGCACCCGTATACT 59.193 41.667 0.56 0.00 43.02 2.12
1910 3116 4.126524 GGCGTTGCCTAGCTTAGG 57.873 61.111 0.00 0.00 46.69 2.69
1972 3178 1.739562 CAGCTCGTTCTCCTGGCAC 60.740 63.158 0.00 0.00 0.00 5.01
1997 3203 1.019278 TCAAGGCACGAATCGCTTCC 61.019 55.000 1.15 1.15 0.00 3.46
2003 3209 1.805945 ACGAATCGCTTCCTCGCAC 60.806 57.895 1.15 0.00 36.03 5.34
2030 3236 3.694566 ACGCAACCTTCTCAAGTTTTTCT 59.305 39.130 0.00 0.00 0.00 2.52
2034 3240 6.560711 GCAACCTTCTCAAGTTTTTCTTACA 58.439 36.000 0.00 0.00 34.66 2.41
2063 3269 3.883489 GGATTATCCTTTCCCTTTGTCCG 59.117 47.826 3.59 0.00 32.53 4.79
2072 3278 0.602905 CCCTTTGTCCGTGTCAGACC 60.603 60.000 0.00 0.00 33.09 3.85
2103 3309 2.430244 TCGTCGTTTCTCGCTGGC 60.430 61.111 0.00 0.00 39.67 4.85
2139 3345 4.260294 CGGACAGAACGACAGATACTACTC 60.260 50.000 0.00 0.00 0.00 2.59
2151 3357 0.970640 TACTACTCAGCCACGGCAAA 59.029 50.000 11.35 0.00 44.88 3.68
2174 3385 2.238521 ACTTTTCAACACCGGCATCAT 58.761 42.857 0.00 0.00 0.00 2.45
2180 3391 0.965363 AACACCGGCATCATGTTCCC 60.965 55.000 0.00 0.00 30.82 3.97
2227 3439 1.186200 CTCGACTCATTCACTCCCCA 58.814 55.000 0.00 0.00 0.00 4.96
2288 3500 2.279851 CAAGTGACACGCCCGTCA 60.280 61.111 0.00 0.00 43.54 4.35
2310 3522 5.008019 TCAGATTATCAACCGGTAGTACGAC 59.992 44.000 8.00 0.00 35.47 4.34
2316 3529 1.180029 ACCGGTAGTACGACTGCATT 58.820 50.000 4.49 0.00 32.12 3.56
2339 3552 1.513158 CGTGGCCGATCAAGTCTCT 59.487 57.895 0.00 0.00 35.63 3.10
2342 3555 1.112113 TGGCCGATCAAGTCTCTACC 58.888 55.000 0.00 0.00 0.00 3.18
2371 7707 1.603739 GGGCCAACCAGAACCACTC 60.604 63.158 4.39 0.00 39.85 3.51
2379 7715 2.165998 ACCAGAACCACTCGTAGTACC 58.834 52.381 0.00 0.00 0.00 3.34
2381 7717 2.758979 CCAGAACCACTCGTAGTACCAT 59.241 50.000 0.00 0.00 0.00 3.55
2387 7723 2.764572 CCACTCGTAGTACCATTCCCTT 59.235 50.000 0.00 0.00 0.00 3.95
2388 7724 3.181478 CCACTCGTAGTACCATTCCCTTC 60.181 52.174 0.00 0.00 0.00 3.46
2394 7730 3.434940 AGTACCATTCCCTTCAACCAC 57.565 47.619 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.198890 TGGCAGCGCACGCAAAAA 62.199 55.556 21.31 3.48 44.88 1.94
13 14 4.921847 GTGGCAGCGCACGCAAAA 62.922 61.111 21.31 5.73 44.88 2.44
32 33 3.476031 TATAAGCCGGCCCAGCTGC 62.476 63.158 26.15 0.00 40.49 5.25
33 34 1.302033 CTATAAGCCGGCCCAGCTG 60.302 63.158 26.15 6.78 40.49 4.24
34 35 3.151906 CTATAAGCCGGCCCAGCT 58.848 61.111 26.15 9.13 44.19 4.24
35 36 2.669910 GCTATAAGCCGGCCCAGC 60.670 66.667 26.15 21.96 34.48 4.85
36 37 2.357517 CGCTATAAGCCGGCCCAG 60.358 66.667 26.15 16.05 38.18 4.45
37 38 4.619227 GCGCTATAAGCCGGCCCA 62.619 66.667 26.15 12.20 38.18 5.36
38 39 4.619227 TGCGCTATAAGCCGGCCC 62.619 66.667 26.15 3.67 38.18 5.80
39 40 3.346606 GTGCGCTATAAGCCGGCC 61.347 66.667 26.15 5.24 38.18 6.13
40 41 3.702555 CGTGCGCTATAAGCCGGC 61.703 66.667 21.89 21.89 38.18 6.13
41 42 3.036084 CCGTGCGCTATAAGCCGG 61.036 66.667 9.73 0.00 38.18 6.13
42 43 2.279252 ACCGTGCGCTATAAGCCG 60.279 61.111 9.73 0.00 38.18 5.52
43 44 2.300787 CGACCGTGCGCTATAAGCC 61.301 63.158 9.73 0.00 38.18 4.35
44 45 2.300787 CCGACCGTGCGCTATAAGC 61.301 63.158 9.73 0.00 38.02 3.09
45 46 2.300787 GCCGACCGTGCGCTATAAG 61.301 63.158 9.73 0.00 0.00 1.73
46 47 2.278989 GCCGACCGTGCGCTATAA 60.279 61.111 9.73 0.00 0.00 0.98
47 48 4.274700 GGCCGACCGTGCGCTATA 62.275 66.667 9.73 0.00 0.00 1.31
53 54 4.814294 CTACCTGGCCGACCGTGC 62.814 72.222 0.00 0.00 39.70 5.34
54 55 4.814294 GCTACCTGGCCGACCGTG 62.814 72.222 0.00 0.00 39.70 4.94
56 57 4.514577 CAGCTACCTGGCCGACCG 62.515 72.222 0.00 0.00 39.70 4.79
70 71 3.431725 GTGGTACGCTTGCCCAGC 61.432 66.667 0.00 0.00 46.31 4.85
71 72 2.031919 TGTGGTACGCTTGCCCAG 59.968 61.111 0.00 0.00 40.97 4.45
72 73 2.281208 GTGTGGTACGCTTGCCCA 60.281 61.111 0.00 0.00 40.97 5.36
73 74 1.599797 AAGTGTGGTACGCTTGCCC 60.600 57.895 6.94 0.00 46.10 5.36
74 75 4.058797 AAGTGTGGTACGCTTGCC 57.941 55.556 6.94 0.00 46.10 4.52
78 79 1.004918 GCTCCAAGTGTGGTACGCT 60.005 57.895 0.00 0.00 46.11 5.07
79 80 1.004918 AGCTCCAAGTGTGGTACGC 60.005 57.895 0.00 0.00 46.11 4.42
80 81 1.291877 GCAGCTCCAAGTGTGGTACG 61.292 60.000 0.00 0.00 46.11 3.67
81 82 0.035458 AGCAGCTCCAAGTGTGGTAC 59.965 55.000 0.00 0.00 46.11 3.34
82 83 1.639722 TAGCAGCTCCAAGTGTGGTA 58.360 50.000 0.00 0.00 46.11 3.25
83 84 0.987294 ATAGCAGCTCCAAGTGTGGT 59.013 50.000 0.00 0.00 46.11 4.16
85 86 2.277969 CTCATAGCAGCTCCAAGTGTG 58.722 52.381 0.00 0.00 0.00 3.82
86 87 1.209019 CCTCATAGCAGCTCCAAGTGT 59.791 52.381 0.00 0.00 0.00 3.55
87 88 1.209019 ACCTCATAGCAGCTCCAAGTG 59.791 52.381 0.00 0.00 0.00 3.16
88 89 1.209019 CACCTCATAGCAGCTCCAAGT 59.791 52.381 0.00 0.00 0.00 3.16
89 90 1.209019 ACACCTCATAGCAGCTCCAAG 59.791 52.381 0.00 0.00 0.00 3.61
90 91 1.208052 GACACCTCATAGCAGCTCCAA 59.792 52.381 0.00 0.00 0.00 3.53
91 92 0.826715 GACACCTCATAGCAGCTCCA 59.173 55.000 0.00 0.00 0.00 3.86
92 93 1.068434 GAGACACCTCATAGCAGCTCC 59.932 57.143 0.00 0.00 39.24 4.70
93 94 1.753649 TGAGACACCTCATAGCAGCTC 59.246 52.381 0.00 0.00 44.01 4.09
94 95 1.857965 TGAGACACCTCATAGCAGCT 58.142 50.000 0.00 0.00 44.01 4.24
102 103 5.047566 TCCATTTCTTTTGAGACACCTCA 57.952 39.130 0.00 0.00 46.95 3.86
103 104 4.083057 GCTCCATTTCTTTTGAGACACCTC 60.083 45.833 0.00 0.00 39.86 3.85
104 105 3.823304 GCTCCATTTCTTTTGAGACACCT 59.177 43.478 0.00 0.00 0.00 4.00
105 106 3.823304 AGCTCCATTTCTTTTGAGACACC 59.177 43.478 0.00 0.00 0.00 4.16
106 107 4.791974 CAGCTCCATTTCTTTTGAGACAC 58.208 43.478 0.00 0.00 0.00 3.67
107 108 3.254166 GCAGCTCCATTTCTTTTGAGACA 59.746 43.478 0.00 0.00 0.00 3.41
108 109 3.366781 GGCAGCTCCATTTCTTTTGAGAC 60.367 47.826 0.00 0.00 34.01 3.36
109 110 2.821969 GGCAGCTCCATTTCTTTTGAGA 59.178 45.455 0.00 0.00 34.01 3.27
110 111 2.824341 AGGCAGCTCCATTTCTTTTGAG 59.176 45.455 5.21 0.00 37.29 3.02
111 112 2.880443 AGGCAGCTCCATTTCTTTTGA 58.120 42.857 5.21 0.00 37.29 2.69
112 113 3.006110 TCAAGGCAGCTCCATTTCTTTTG 59.994 43.478 5.21 0.38 37.29 2.44
113 114 3.233507 TCAAGGCAGCTCCATTTCTTTT 58.766 40.909 5.21 0.00 37.29 2.27
114 115 2.824341 CTCAAGGCAGCTCCATTTCTTT 59.176 45.455 5.21 0.00 37.29 2.52
115 116 2.040813 TCTCAAGGCAGCTCCATTTCTT 59.959 45.455 5.21 0.00 37.29 2.52
116 117 1.632409 TCTCAAGGCAGCTCCATTTCT 59.368 47.619 5.21 0.00 37.29 2.52
117 118 2.015587 CTCTCAAGGCAGCTCCATTTC 58.984 52.381 5.21 0.00 37.29 2.17
118 119 1.632409 TCTCTCAAGGCAGCTCCATTT 59.368 47.619 5.21 0.00 37.29 2.32
119 120 1.209990 CTCTCTCAAGGCAGCTCCATT 59.790 52.381 5.21 0.00 37.29 3.16
120 121 0.831966 CTCTCTCAAGGCAGCTCCAT 59.168 55.000 5.21 0.00 37.29 3.41
121 122 0.251967 TCTCTCTCAAGGCAGCTCCA 60.252 55.000 5.21 0.00 37.29 3.86
122 123 0.461135 CTCTCTCTCAAGGCAGCTCC 59.539 60.000 0.00 0.00 0.00 4.70
123 124 1.134946 GTCTCTCTCTCAAGGCAGCTC 59.865 57.143 0.00 0.00 0.00 4.09
124 125 1.185315 GTCTCTCTCTCAAGGCAGCT 58.815 55.000 0.00 0.00 0.00 4.24
125 126 0.894141 TGTCTCTCTCTCAAGGCAGC 59.106 55.000 0.00 0.00 0.00 5.25
126 127 1.477700 CCTGTCTCTCTCTCAAGGCAG 59.522 57.143 0.00 0.00 43.34 4.85
127 128 1.203112 ACCTGTCTCTCTCTCAAGGCA 60.203 52.381 0.00 0.00 0.00 4.75
128 129 1.204467 CACCTGTCTCTCTCTCAAGGC 59.796 57.143 0.00 0.00 0.00 4.35
129 130 1.204467 GCACCTGTCTCTCTCTCAAGG 59.796 57.143 0.00 0.00 0.00 3.61
130 131 1.891811 TGCACCTGTCTCTCTCTCAAG 59.108 52.381 0.00 0.00 0.00 3.02
131 132 2.001076 TGCACCTGTCTCTCTCTCAA 57.999 50.000 0.00 0.00 0.00 3.02
132 133 2.228545 ATGCACCTGTCTCTCTCTCA 57.771 50.000 0.00 0.00 0.00 3.27
133 134 3.287222 ACTATGCACCTGTCTCTCTCTC 58.713 50.000 0.00 0.00 0.00 3.20
134 135 3.380471 ACTATGCACCTGTCTCTCTCT 57.620 47.619 0.00 0.00 0.00 3.10
135 136 3.699038 AGAACTATGCACCTGTCTCTCTC 59.301 47.826 0.00 0.00 0.00 3.20
136 137 3.446873 CAGAACTATGCACCTGTCTCTCT 59.553 47.826 0.00 0.00 0.00 3.10
137 138 3.430098 CCAGAACTATGCACCTGTCTCTC 60.430 52.174 0.00 0.00 0.00 3.20
138 139 2.499289 CCAGAACTATGCACCTGTCTCT 59.501 50.000 0.00 0.00 0.00 3.10
139 140 2.419297 CCCAGAACTATGCACCTGTCTC 60.419 54.545 0.00 0.00 0.00 3.36
140 141 1.556911 CCCAGAACTATGCACCTGTCT 59.443 52.381 0.00 0.00 0.00 3.41
141 142 1.407437 CCCCAGAACTATGCACCTGTC 60.407 57.143 0.00 0.00 0.00 3.51
142 143 0.620556 CCCCAGAACTATGCACCTGT 59.379 55.000 0.00 0.00 0.00 4.00
143 144 0.620556 ACCCCAGAACTATGCACCTG 59.379 55.000 0.00 0.00 0.00 4.00
144 145 0.912486 GACCCCAGAACTATGCACCT 59.088 55.000 0.00 0.00 0.00 4.00
145 146 0.462047 CGACCCCAGAACTATGCACC 60.462 60.000 0.00 0.00 0.00 5.01
146 147 0.249398 ACGACCCCAGAACTATGCAC 59.751 55.000 0.00 0.00 0.00 4.57
147 148 1.754803 CTACGACCCCAGAACTATGCA 59.245 52.381 0.00 0.00 0.00 3.96
148 149 1.538419 GCTACGACCCCAGAACTATGC 60.538 57.143 0.00 0.00 0.00 3.14
149 150 2.032620 AGCTACGACCCCAGAACTATG 58.967 52.381 0.00 0.00 0.00 2.23
150 151 2.091775 AGAGCTACGACCCCAGAACTAT 60.092 50.000 0.00 0.00 0.00 2.12
151 152 1.284198 AGAGCTACGACCCCAGAACTA 59.716 52.381 0.00 0.00 0.00 2.24
152 153 0.039911 AGAGCTACGACCCCAGAACT 59.960 55.000 0.00 0.00 0.00 3.01
153 154 0.173708 CAGAGCTACGACCCCAGAAC 59.826 60.000 0.00 0.00 0.00 3.01
154 155 0.251653 ACAGAGCTACGACCCCAGAA 60.252 55.000 0.00 0.00 0.00 3.02
155 156 0.622136 TACAGAGCTACGACCCCAGA 59.378 55.000 0.00 0.00 0.00 3.86
156 157 1.338337 CATACAGAGCTACGACCCCAG 59.662 57.143 0.00 0.00 0.00 4.45
157 158 1.064240 TCATACAGAGCTACGACCCCA 60.064 52.381 0.00 0.00 0.00 4.96
158 159 1.688772 TCATACAGAGCTACGACCCC 58.311 55.000 0.00 0.00 0.00 4.95
159 160 5.009811 AGTTTATCATACAGAGCTACGACCC 59.990 44.000 0.00 0.00 0.00 4.46
160 161 6.074544 AGTTTATCATACAGAGCTACGACC 57.925 41.667 0.00 0.00 0.00 4.79
161 162 8.085720 TCTAGTTTATCATACAGAGCTACGAC 57.914 38.462 0.00 0.00 0.00 4.34
162 163 7.932491 ACTCTAGTTTATCATACAGAGCTACGA 59.068 37.037 0.00 0.00 34.25 3.43
163 164 8.012809 CACTCTAGTTTATCATACAGAGCTACG 58.987 40.741 0.00 0.00 34.25 3.51
164 165 9.058174 TCACTCTAGTTTATCATACAGAGCTAC 57.942 37.037 0.00 0.00 34.25 3.58
165 166 9.628500 TTCACTCTAGTTTATCATACAGAGCTA 57.372 33.333 0.00 0.00 34.25 3.32
166 167 8.526667 TTCACTCTAGTTTATCATACAGAGCT 57.473 34.615 0.00 0.00 34.25 4.09
167 168 9.757227 AATTCACTCTAGTTTATCATACAGAGC 57.243 33.333 0.00 0.00 34.25 4.09
169 170 9.534565 GCAATTCACTCTAGTTTATCATACAGA 57.465 33.333 0.00 0.00 0.00 3.41
170 171 9.317936 TGCAATTCACTCTAGTTTATCATACAG 57.682 33.333 0.00 0.00 0.00 2.74
171 172 9.665719 TTGCAATTCACTCTAGTTTATCATACA 57.334 29.630 0.00 0.00 0.00 2.29
226 227 3.731652 CAAACCTTGCCTGAAATGTCA 57.268 42.857 0.00 0.00 0.00 3.58
324 327 4.187694 ACGTACTTAAAACGGTCCAAACA 58.812 39.130 12.92 0.00 44.48 2.83
376 380 1.134640 AGTGTGAACAGTTACGCCACA 60.135 47.619 2.20 2.20 35.65 4.17
440 444 8.076781 GGAAACTTAAGTTGGCTCTTTTCTAAG 58.923 37.037 21.22 2.73 38.44 2.18
457 463 3.265995 GGTGGGAGGAGATGGAAACTTAA 59.734 47.826 0.00 0.00 0.00 1.85
480 490 1.133976 GGCCCAGCTGACATAGTCAAT 60.134 52.381 17.39 0.00 42.26 2.57
819 1372 3.958147 TTACGGGAGCAGCAGCAGC 62.958 63.158 3.17 0.46 45.49 5.25
820 1373 1.812922 CTTACGGGAGCAGCAGCAG 60.813 63.158 3.17 0.00 45.49 4.24
821 1374 2.265739 CTTACGGGAGCAGCAGCA 59.734 61.111 3.17 0.00 45.49 4.41
822 1375 1.811679 GACTTACGGGAGCAGCAGC 60.812 63.158 0.00 0.00 42.56 5.25
823 1376 1.517257 CGACTTACGGGAGCAGCAG 60.517 63.158 0.00 0.00 38.46 4.24
824 1377 2.571757 CGACTTACGGGAGCAGCA 59.428 61.111 0.00 0.00 38.46 4.41
998 1646 1.750018 CAGCCAACCGCATCCATCA 60.750 57.895 0.00 0.00 41.38 3.07
1090 1770 2.480610 CCTGCACCACTGTTGCGTT 61.481 57.895 0.54 0.00 0.00 4.84
1096 1776 1.149174 CTTCCACCTGCACCACTGT 59.851 57.895 0.00 0.00 0.00 3.55
1141 1821 3.659092 CGCGCCAAGTCCTTGCAA 61.659 61.111 0.00 0.00 39.16 4.08
1171 1851 4.514577 CTCGTCGCGCCCATTCCT 62.515 66.667 0.00 0.00 0.00 3.36
1355 2529 1.380380 CAATCAGGTCCTTGGCCCC 60.380 63.158 0.00 0.00 0.00 5.80
1368 2542 9.570488 CTTTTTGGAAAAATGAAAAAGCAATCA 57.430 25.926 0.00 0.00 38.90 2.57
1435 2609 0.511221 CTGACTTGGCGTAACGGTTG 59.489 55.000 3.07 0.00 0.00 3.77
1449 2623 0.323957 GGGTCCCGCTTTTACTGACT 59.676 55.000 0.00 0.00 0.00 3.41
1455 2629 2.128535 TGATATGGGGTCCCGCTTTTA 58.871 47.619 0.48 0.00 39.42 1.52
1472 2647 6.873076 TGGACCGTTTTAAGTACGTTTATGAT 59.127 34.615 0.00 0.00 37.30 2.45
1545 2720 8.848182 ACACATTTATGAAATTGTGCCAAAAAT 58.152 25.926 11.15 0.00 44.88 1.82
1562 2737 4.262420 GGTTTGCAGGAACCACACATTTAT 60.262 41.667 14.26 0.00 46.66 1.40
1623 2799 8.303876 GCAGGAAATTGGAAGTTGATTAGTTTA 58.696 33.333 0.00 0.00 0.00 2.01
1628 2804 6.662865 TTGCAGGAAATTGGAAGTTGATTA 57.337 33.333 0.00 0.00 0.00 1.75
1632 2808 5.007921 CCTTTTTGCAGGAAATTGGAAGTTG 59.992 40.000 1.48 0.00 35.71 3.16
1647 2823 6.662865 TTGGAAGATAATGACCTTTTTGCA 57.337 33.333 0.00 0.00 0.00 4.08
1677 2854 4.964262 TCCCAGAATTATGGTAAGTACGGT 59.036 41.667 17.60 0.00 38.81 4.83
1685 2862 6.884472 TGTCTTCTTCCCAGAATTATGGTA 57.116 37.500 17.60 0.00 38.42 3.25
1686 2863 5.779241 TGTCTTCTTCCCAGAATTATGGT 57.221 39.130 17.60 0.00 38.42 3.55
1688 2865 6.512415 GCGATTGTCTTCTTCCCAGAATTATG 60.512 42.308 0.00 0.00 38.42 1.90
1697 2874 1.740025 CAAGGCGATTGTCTTCTTCCC 59.260 52.381 0.00 0.00 38.16 3.97
1711 2888 1.818674 AGGATTTAGTTTGGCAAGGCG 59.181 47.619 0.00 0.00 0.00 5.52
1712 2889 3.961480 AAGGATTTAGTTTGGCAAGGC 57.039 42.857 0.00 0.00 0.00 4.35
1765 2943 4.747540 TGAACAATGAATGGTTGACGAG 57.252 40.909 0.00 0.00 0.00 4.18
1769 2947 4.414677 TCCCATGAACAATGAATGGTTGA 58.585 39.130 0.00 3.13 39.43 3.18
1780 2986 4.952071 TGCTTGATTTTCCCATGAACAA 57.048 36.364 0.00 0.00 0.00 2.83
1812 3018 7.457868 TCTTACGCTGATTTTACATAAAACCG 58.542 34.615 0.00 3.80 37.92 4.44
1945 3151 1.519455 GAACGAGCTGCGCCATACT 60.519 57.895 4.18 0.00 46.04 2.12
1972 3178 1.002134 ATTCGTGCCTTGACCCTGG 60.002 57.895 0.00 0.00 0.00 4.45
1997 3203 4.374702 GTTGCGTGCCTGTGCGAG 62.375 66.667 0.00 0.00 41.78 5.03
2003 3209 1.165907 TTGAGAAGGTTGCGTGCCTG 61.166 55.000 0.00 0.00 36.30 4.85
2063 3269 2.872858 GGAACTTGAGTTGGTCTGACAC 59.127 50.000 10.38 0.00 38.56 3.67
2072 3278 1.269621 ACGACGAGGGAACTTGAGTTG 60.270 52.381 0.00 0.00 45.46 3.16
2139 3345 0.385390 AAAGTTCTTTGCCGTGGCTG 59.615 50.000 12.84 2.85 42.51 4.85
2151 3357 1.757682 TGCCGGTGTTGAAAAGTTCT 58.242 45.000 1.90 0.00 0.00 3.01
2227 3439 1.864711 CATTTGGACACGTCGTTGTCT 59.135 47.619 19.94 5.36 44.63 3.41
2272 3484 1.816863 ATCTGACGGGCGTGTCACTT 61.817 55.000 7.06 0.00 43.62 3.16
2288 3500 5.008415 CAGTCGTACTACCGGTTGATAATCT 59.992 44.000 23.12 11.43 0.00 2.40
2310 3522 0.813610 TCGGCCACGGAATAATGCAG 60.814 55.000 2.24 0.00 41.39 4.41
2316 3529 0.828022 ACTTGATCGGCCACGGAATA 59.172 50.000 2.24 0.00 41.39 1.75
2339 3552 2.345991 GCCCGTGCTTCACAGGTA 59.654 61.111 1.72 0.00 34.65 3.08
2342 3555 2.594303 TTGGCCCGTGCTTCACAG 60.594 61.111 0.00 0.00 37.74 3.66
2371 7707 3.055675 TGGTTGAAGGGAATGGTACTACG 60.056 47.826 0.00 0.00 0.00 3.51
2379 7715 1.613437 GTGTGGTGGTTGAAGGGAATG 59.387 52.381 0.00 0.00 0.00 2.67
2381 7717 0.923358 AGTGTGGTGGTTGAAGGGAA 59.077 50.000 0.00 0.00 0.00 3.97
2387 7723 0.833949 TGCACTAGTGTGGTGGTTGA 59.166 50.000 23.44 0.00 43.97 3.18
2388 7724 1.229428 CTGCACTAGTGTGGTGGTTG 58.771 55.000 23.44 0.00 43.97 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.