Multiple sequence alignment - TraesCS7B01G354800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G354800 chr7B 100.000 4353 0 0 1 4353 613179954 613175602 0.000000e+00 8039.0
1 TraesCS7B01G354800 chr7B 81.972 1065 144 31 3189 4226 613151060 613150017 0.000000e+00 859.0
2 TraesCS7B01G354800 chr7B 85.329 593 65 16 3217 3793 613159817 613159231 1.040000e-165 593.0
3 TraesCS7B01G354800 chr7B 80.996 542 85 5 2601 3142 613254402 613253879 8.710000e-112 414.0
4 TraesCS7B01G354800 chr7B 79.452 438 53 19 3216 3648 613253512 613253107 4.290000e-70 276.0
5 TraesCS7B01G354800 chr7B 76.642 548 71 27 1387 1901 613155156 613154633 2.600000e-62 250.0
6 TraesCS7B01G354800 chr7B 86.420 81 11 0 2315 2395 613152725 613152645 6.000000e-14 89.8
7 TraesCS7B01G354800 chr7D 92.832 3669 184 35 590 4226 563529537 563525916 0.000000e+00 5245.0
8 TraesCS7B01G354800 chr7D 84.691 1326 135 36 2716 4003 563480029 563478734 0.000000e+00 1262.0
9 TraesCS7B01G354800 chr7D 85.366 533 65 9 3267 3793 563516486 563515961 1.380000e-149 540.0
10 TraesCS7B01G354800 chr7D 82.537 544 73 10 2601 3142 563663971 563663448 3.970000e-125 459.0
11 TraesCS7B01G354800 chr7D 76.937 542 74 30 1385 1898 563481393 563480875 1.200000e-65 261.0
12 TraesCS7B01G354800 chr7D 73.734 533 69 31 1918 2402 563480774 563480265 4.540000e-30 143.0
13 TraesCS7B01G354800 chr7A 90.787 1639 115 20 695 2309 649074672 649073046 0.000000e+00 2158.0
14 TraesCS7B01G354800 chr7A 88.944 1420 110 27 2314 3712 649073004 649071611 0.000000e+00 1709.0
15 TraesCS7B01G354800 chr7A 91.020 902 66 10 2801 3689 649060073 649059174 0.000000e+00 1203.0
16 TraesCS7B01G354800 chr7A 74.912 1140 124 68 1482 2543 649061273 649060218 5.320000e-99 372.0
17 TraesCS7B01G354800 chr7A 79.208 505 82 12 2639 3140 649185964 649185480 3.250000e-86 329.0
18 TraesCS7B01G354800 chr7A 94.872 117 6 0 4237 4353 707104130 707104014 2.670000e-42 183.0
19 TraesCS7B01G354800 chr7A 98.077 104 1 1 590 693 649075113 649075011 3.460000e-41 180.0
20 TraesCS7B01G354800 chr7A 78.445 283 34 14 3219 3486 648684328 648684058 4.510000e-35 159.0
21 TraesCS7B01G354800 chr7A 80.723 166 17 10 262 422 649075504 649075349 9.890000e-22 115.0
22 TraesCS7B01G354800 chr7A 76.211 227 26 15 1016 1235 649154025 649153820 1.290000e-15 95.3
23 TraesCS7B01G354800 chr3D 97.345 113 3 0 4241 4353 47605288 47605400 4.440000e-45 193.0
24 TraesCS7B01G354800 chr3D 76.547 307 48 16 2817 3106 304328659 304328360 3.510000e-31 147.0
25 TraesCS7B01G354800 chr3D 95.652 69 3 0 999 1067 304331358 304331290 1.280000e-20 111.0
26 TraesCS7B01G354800 chr3D 88.333 60 4 3 1610 1668 304330633 304330576 7.810000e-08 69.4
27 TraesCS7B01G354800 chr2D 97.345 113 3 0 4241 4353 67428287 67428175 4.440000e-45 193.0
28 TraesCS7B01G354800 chr6D 94.309 123 7 0 4231 4353 4321217 4321339 5.750000e-44 189.0
29 TraesCS7B01G354800 chr6B 95.690 116 5 0 4238 4353 650776182 650776297 2.070000e-43 187.0
30 TraesCS7B01G354800 chr4A 95.690 116 5 0 4238 4353 624923191 624923306 2.070000e-43 187.0
31 TraesCS7B01G354800 chr2A 95.690 116 5 0 4238 4353 522247249 522247364 2.070000e-43 187.0
32 TraesCS7B01G354800 chr3A 94.915 118 6 0 4236 4353 25543173 25543056 7.430000e-43 185.0
33 TraesCS7B01G354800 chr3A 94.167 120 7 0 4234 4353 562937608 562937727 2.670000e-42 183.0
34 TraesCS7B01G354800 chr3A 91.406 128 11 0 3217 3344 430337216 430337343 4.470000e-40 176.0
35 TraesCS7B01G354800 chr3A 77.199 307 47 15 2817 3106 430336775 430337075 1.620000e-34 158.0
36 TraesCS7B01G354800 chr3A 95.652 69 3 0 999 1067 430333993 430334061 1.280000e-20 111.0
37 TraesCS7B01G354800 chr3B 88.235 153 14 3 3205 3355 417265255 417265405 3.460000e-41 180.0
38 TraesCS7B01G354800 chr3B 91.129 124 11 0 2641 2764 417264175 417264298 7.490000e-38 169.0
39 TraesCS7B01G354800 chr3B 76.412 301 57 9 2817 3106 417264818 417265115 2.710000e-32 150.0
40 TraesCS7B01G354800 chr3B 95.652 69 3 0 999 1067 417261918 417261986 1.280000e-20 111.0
41 TraesCS7B01G354800 chr3B 88.333 60 4 3 1610 1668 417262659 417262716 7.810000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G354800 chr7B 613175602 613179954 4352 True 8039.000000 8039 100.00000 1 4353 1 chr7B.!!$R2 4352
1 TraesCS7B01G354800 chr7B 613159231 613159817 586 True 593.000000 593 85.32900 3217 3793 1 chr7B.!!$R1 576
2 TraesCS7B01G354800 chr7B 613150017 613155156 5139 True 399.600000 859 81.67800 1387 4226 3 chr7B.!!$R3 2839
3 TraesCS7B01G354800 chr7B 613253107 613254402 1295 True 345.000000 414 80.22400 2601 3648 2 chr7B.!!$R4 1047
4 TraesCS7B01G354800 chr7D 563525916 563529537 3621 True 5245.000000 5245 92.83200 590 4226 1 chr7D.!!$R2 3636
5 TraesCS7B01G354800 chr7D 563478734 563481393 2659 True 555.333333 1262 78.45400 1385 4003 3 chr7D.!!$R4 2618
6 TraesCS7B01G354800 chr7D 563515961 563516486 525 True 540.000000 540 85.36600 3267 3793 1 chr7D.!!$R1 526
7 TraesCS7B01G354800 chr7D 563663448 563663971 523 True 459.000000 459 82.53700 2601 3142 1 chr7D.!!$R3 541
8 TraesCS7B01G354800 chr7A 649071611 649075504 3893 True 1040.500000 2158 89.63275 262 3712 4 chr7A.!!$R6 3450
9 TraesCS7B01G354800 chr7A 649059174 649061273 2099 True 787.500000 1203 82.96600 1482 3689 2 chr7A.!!$R5 2207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1422 0.041982 ACACCTCCTCCTCTTCCTCC 59.958 60.0 0.0 0.0 0.0 4.30 F
1087 1528 0.680061 CCCCATCCTACCGCTAAGAC 59.320 60.0 0.0 0.0 0.0 3.01 F
2302 4335 0.675522 TGCCGCTACTAACTTTGCCC 60.676 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2755 0.261696 AATGGAATACAGGCCCACCC 59.738 55.0 0.00 0.0 36.11 4.61 R
2349 4423 0.806241 GCTTTTTATTCGGTCCGGCA 59.194 50.0 12.29 0.0 0.00 5.69 R
4234 7515 0.185175 AACAAACACCCCCTGAGACC 59.815 55.0 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.812690 AGATGCTAAACATATTGAATGCTCA 57.187 32.000 0.00 0.00 39.84 4.26
29 30 7.646314 AGATGCTAAACATATTGAATGCTCAC 58.354 34.615 0.00 0.00 39.84 3.51
30 31 6.135290 TGCTAAACATATTGAATGCTCACC 57.865 37.500 0.00 0.00 0.00 4.02
31 32 5.651576 TGCTAAACATATTGAATGCTCACCA 59.348 36.000 0.00 0.00 0.00 4.17
32 33 6.321945 TGCTAAACATATTGAATGCTCACCAT 59.678 34.615 0.00 0.00 35.06 3.55
33 34 7.147863 TGCTAAACATATTGAATGCTCACCATT 60.148 33.333 0.00 0.00 46.57 3.16
34 35 7.168637 GCTAAACATATTGAATGCTCACCATTG 59.831 37.037 0.00 0.00 44.02 2.82
35 36 6.778834 AACATATTGAATGCTCACCATTGA 57.221 33.333 0.00 0.00 44.02 2.57
36 37 6.778834 ACATATTGAATGCTCACCATTGAA 57.221 33.333 0.00 0.00 44.02 2.69
37 38 6.802608 ACATATTGAATGCTCACCATTGAAG 58.197 36.000 0.00 0.00 44.02 3.02
38 39 3.581024 TTGAATGCTCACCATTGAAGC 57.419 42.857 0.00 0.00 44.02 3.86
39 40 2.516906 TGAATGCTCACCATTGAAGCA 58.483 42.857 9.68 9.68 44.02 3.91
40 41 2.892215 TGAATGCTCACCATTGAAGCAA 59.108 40.909 10.85 0.00 44.02 3.91
41 42 3.512329 TGAATGCTCACCATTGAAGCAAT 59.488 39.130 10.85 4.79 44.02 3.56
42 43 3.795623 ATGCTCACCATTGAAGCAATC 57.204 42.857 10.85 0.00 38.52 2.67
43 44 2.799017 TGCTCACCATTGAAGCAATCT 58.201 42.857 6.05 0.00 34.77 2.40
44 45 3.159472 TGCTCACCATTGAAGCAATCTT 58.841 40.909 6.05 0.00 34.77 2.40
45 46 3.575256 TGCTCACCATTGAAGCAATCTTT 59.425 39.130 6.05 0.00 34.77 2.52
46 47 3.924686 GCTCACCATTGAAGCAATCTTTG 59.075 43.478 0.00 0.00 31.05 2.77
47 48 4.560108 GCTCACCATTGAAGCAATCTTTGT 60.560 41.667 0.00 0.00 31.05 2.83
48 49 4.873817 TCACCATTGAAGCAATCTTTGTG 58.126 39.130 0.00 0.00 31.05 3.33
49 50 3.991773 CACCATTGAAGCAATCTTTGTGG 59.008 43.478 0.00 0.00 35.91 4.17
50 51 3.642848 ACCATTGAAGCAATCTTTGTGGT 59.357 39.130 0.00 0.00 37.07 4.16
51 52 4.101430 ACCATTGAAGCAATCTTTGTGGTT 59.899 37.500 0.00 0.00 37.85 3.67
52 53 4.449743 CCATTGAAGCAATCTTTGTGGTTG 59.550 41.667 0.00 0.00 36.86 3.77
53 54 3.731652 TGAAGCAATCTTTGTGGTTGG 57.268 42.857 0.00 0.00 36.86 3.77
54 55 3.295093 TGAAGCAATCTTTGTGGTTGGA 58.705 40.909 0.00 0.00 36.86 3.53
55 56 3.896888 TGAAGCAATCTTTGTGGTTGGAT 59.103 39.130 0.00 0.00 36.86 3.41
56 57 4.344679 TGAAGCAATCTTTGTGGTTGGATT 59.655 37.500 0.00 0.00 36.86 3.01
57 58 4.261578 AGCAATCTTTGTGGTTGGATTG 57.738 40.909 9.33 9.33 44.31 2.67
58 59 3.896888 AGCAATCTTTGTGGTTGGATTGA 59.103 39.130 15.67 0.00 44.27 2.57
59 60 3.989817 GCAATCTTTGTGGTTGGATTGAC 59.010 43.478 15.67 6.15 44.27 3.18
60 61 4.501229 GCAATCTTTGTGGTTGGATTGACA 60.501 41.667 15.67 0.00 44.27 3.58
61 62 5.786311 CAATCTTTGTGGTTGGATTGACAT 58.214 37.500 8.31 0.00 44.27 3.06
62 63 4.852134 TCTTTGTGGTTGGATTGACATG 57.148 40.909 0.00 0.00 0.00 3.21
63 64 4.468713 TCTTTGTGGTTGGATTGACATGA 58.531 39.130 0.00 0.00 0.00 3.07
64 65 4.892345 TCTTTGTGGTTGGATTGACATGAA 59.108 37.500 0.00 0.00 0.00 2.57
65 66 5.539574 TCTTTGTGGTTGGATTGACATGAAT 59.460 36.000 0.00 0.00 0.00 2.57
66 67 4.787260 TGTGGTTGGATTGACATGAATG 57.213 40.909 0.00 0.00 0.00 2.67
67 68 3.510753 TGTGGTTGGATTGACATGAATGG 59.489 43.478 0.00 0.00 0.00 3.16
68 69 3.763360 GTGGTTGGATTGACATGAATGGA 59.237 43.478 0.00 0.00 0.00 3.41
69 70 4.403432 GTGGTTGGATTGACATGAATGGAT 59.597 41.667 0.00 0.00 0.00 3.41
70 71 4.403113 TGGTTGGATTGACATGAATGGATG 59.597 41.667 0.00 0.00 0.00 3.51
71 72 4.202182 GGTTGGATTGACATGAATGGATGG 60.202 45.833 0.00 0.00 0.00 3.51
72 73 4.254039 TGGATTGACATGAATGGATGGT 57.746 40.909 0.00 0.00 0.00 3.55
73 74 4.612401 TGGATTGACATGAATGGATGGTT 58.388 39.130 0.00 0.00 0.00 3.67
74 75 4.403113 TGGATTGACATGAATGGATGGTTG 59.597 41.667 0.00 0.00 0.00 3.77
75 76 4.646040 GGATTGACATGAATGGATGGTTGA 59.354 41.667 0.00 0.00 0.00 3.18
76 77 5.221185 GGATTGACATGAATGGATGGTTGAG 60.221 44.000 0.00 0.00 0.00 3.02
77 78 4.573021 TGACATGAATGGATGGTTGAGA 57.427 40.909 0.00 0.00 0.00 3.27
78 79 5.120054 TGACATGAATGGATGGTTGAGAT 57.880 39.130 0.00 0.00 0.00 2.75
79 80 5.512298 TGACATGAATGGATGGTTGAGATT 58.488 37.500 0.00 0.00 0.00 2.40
80 81 6.661777 TGACATGAATGGATGGTTGAGATTA 58.338 36.000 0.00 0.00 0.00 1.75
81 82 6.769341 TGACATGAATGGATGGTTGAGATTAG 59.231 38.462 0.00 0.00 0.00 1.73
82 83 6.666678 ACATGAATGGATGGTTGAGATTAGT 58.333 36.000 0.00 0.00 0.00 2.24
83 84 7.121382 ACATGAATGGATGGTTGAGATTAGTT 58.879 34.615 0.00 0.00 0.00 2.24
84 85 7.284034 ACATGAATGGATGGTTGAGATTAGTTC 59.716 37.037 0.00 0.00 0.00 3.01
85 86 6.720309 TGAATGGATGGTTGAGATTAGTTCA 58.280 36.000 0.00 0.00 0.00 3.18
86 87 7.174413 TGAATGGATGGTTGAGATTAGTTCAA 58.826 34.615 0.00 0.00 32.44 2.69
87 88 7.835682 TGAATGGATGGTTGAGATTAGTTCAAT 59.164 33.333 0.00 0.00 36.96 2.57
88 89 7.814264 ATGGATGGTTGAGATTAGTTCAATC 57.186 36.000 0.00 0.00 43.02 2.67
100 101 7.313951 GATTAGTTCAATCTGTCCCTTTGAG 57.686 40.000 0.00 0.00 40.06 3.02
101 102 4.982241 AGTTCAATCTGTCCCTTTGAGA 57.018 40.909 0.00 0.00 31.54 3.27
102 103 5.511386 AGTTCAATCTGTCCCTTTGAGAT 57.489 39.130 0.00 0.00 31.54 2.75
103 104 5.885465 AGTTCAATCTGTCCCTTTGAGATT 58.115 37.500 0.00 0.00 36.99 2.40
104 105 6.310149 AGTTCAATCTGTCCCTTTGAGATTT 58.690 36.000 0.00 0.00 34.82 2.17
105 106 6.779539 AGTTCAATCTGTCCCTTTGAGATTTT 59.220 34.615 0.00 0.00 34.82 1.82
106 107 7.288621 AGTTCAATCTGTCCCTTTGAGATTTTT 59.711 33.333 0.00 0.00 34.82 1.94
107 108 7.219484 TCAATCTGTCCCTTTGAGATTTTTC 57.781 36.000 0.00 0.00 34.82 2.29
108 109 7.006509 TCAATCTGTCCCTTTGAGATTTTTCT 58.993 34.615 0.00 0.00 34.82 2.52
109 110 7.506938 TCAATCTGTCCCTTTGAGATTTTTCTT 59.493 33.333 0.00 0.00 34.82 2.52
110 111 8.796475 CAATCTGTCCCTTTGAGATTTTTCTTA 58.204 33.333 0.00 0.00 34.82 2.10
111 112 9.539194 AATCTGTCCCTTTGAGATTTTTCTTAT 57.461 29.630 0.00 0.00 33.54 1.73
117 118 9.768215 TCCCTTTGAGATTTTTCTTATATTGGT 57.232 29.630 0.00 0.00 0.00 3.67
118 119 9.807649 CCCTTTGAGATTTTTCTTATATTGGTG 57.192 33.333 0.00 0.00 0.00 4.17
119 120 9.305925 CCTTTGAGATTTTTCTTATATTGGTGC 57.694 33.333 0.00 0.00 0.00 5.01
120 121 9.859427 CTTTGAGATTTTTCTTATATTGGTGCA 57.141 29.630 0.00 0.00 0.00 4.57
121 122 9.859427 TTTGAGATTTTTCTTATATTGGTGCAG 57.141 29.630 0.00 0.00 0.00 4.41
122 123 8.806429 TGAGATTTTTCTTATATTGGTGCAGA 57.194 30.769 0.00 0.00 0.00 4.26
123 124 9.412460 TGAGATTTTTCTTATATTGGTGCAGAT 57.588 29.630 0.00 0.00 0.00 2.90
139 140 8.175925 TGGTGCAGATATAGATAGATAGATGC 57.824 38.462 0.00 0.00 31.80 3.91
140 141 7.781693 TGGTGCAGATATAGATAGATAGATGCA 59.218 37.037 0.00 0.00 35.74 3.96
141 142 8.637099 GGTGCAGATATAGATAGATAGATGCAA 58.363 37.037 0.00 0.00 37.92 4.08
142 143 9.681692 GTGCAGATATAGATAGATAGATGCAAG 57.318 37.037 0.00 0.00 37.92 4.01
143 144 8.858094 TGCAGATATAGATAGATAGATGCAAGG 58.142 37.037 0.00 0.00 35.44 3.61
144 145 9.076781 GCAGATATAGATAGATAGATGCAAGGA 57.923 37.037 0.00 0.00 31.63 3.36
156 157 9.540538 AGATAGATGCAAGGACTATTATGTACT 57.459 33.333 0.00 0.00 31.30 2.73
160 161 9.686683 AGATGCAAGGACTATTATGTACTTTTT 57.313 29.630 0.00 0.00 38.93 1.94
205 206 7.631717 ATTAGAGGAAAGATACCAACTTTGC 57.368 36.000 0.00 0.00 42.84 3.68
208 209 4.342352 GGAAAGATACCAACTTTGCTCG 57.658 45.455 0.00 0.00 40.63 5.03
209 210 3.751698 GGAAAGATACCAACTTTGCTCGT 59.248 43.478 0.00 0.00 40.63 4.18
210 211 4.933400 GGAAAGATACCAACTTTGCTCGTA 59.067 41.667 0.00 0.00 40.63 3.43
211 212 5.410439 GGAAAGATACCAACTTTGCTCGTAA 59.590 40.000 0.00 0.00 40.63 3.18
212 213 6.072893 GGAAAGATACCAACTTTGCTCGTAAA 60.073 38.462 0.00 0.00 40.63 2.01
213 214 5.857822 AGATACCAACTTTGCTCGTAAAC 57.142 39.130 0.00 0.00 0.00 2.01
214 215 5.548406 AGATACCAACTTTGCTCGTAAACT 58.452 37.500 0.00 0.00 0.00 2.66
215 216 6.694447 AGATACCAACTTTGCTCGTAAACTA 58.306 36.000 0.00 0.00 0.00 2.24
216 217 7.156673 AGATACCAACTTTGCTCGTAAACTAA 58.843 34.615 0.00 0.00 0.00 2.24
217 218 5.668558 ACCAACTTTGCTCGTAAACTAAG 57.331 39.130 0.00 0.00 0.00 2.18
218 219 5.362263 ACCAACTTTGCTCGTAAACTAAGA 58.638 37.500 0.00 0.00 0.00 2.10
219 220 5.818857 ACCAACTTTGCTCGTAAACTAAGAA 59.181 36.000 0.00 0.00 0.00 2.52
220 221 6.316890 ACCAACTTTGCTCGTAAACTAAGAAA 59.683 34.615 0.00 0.00 0.00 2.52
221 222 6.851330 CCAACTTTGCTCGTAAACTAAGAAAG 59.149 38.462 0.00 0.00 0.00 2.62
222 223 6.541111 ACTTTGCTCGTAAACTAAGAAAGG 57.459 37.500 0.00 0.00 0.00 3.11
223 224 5.469084 ACTTTGCTCGTAAACTAAGAAAGGG 59.531 40.000 0.00 0.00 0.00 3.95
224 225 4.877378 TGCTCGTAAACTAAGAAAGGGA 57.123 40.909 0.00 0.00 0.00 4.20
225 226 5.416271 TGCTCGTAAACTAAGAAAGGGAT 57.584 39.130 0.00 0.00 0.00 3.85
226 227 5.801380 TGCTCGTAAACTAAGAAAGGGATT 58.199 37.500 0.00 0.00 0.00 3.01
227 228 6.938507 TGCTCGTAAACTAAGAAAGGGATTA 58.061 36.000 0.00 0.00 0.00 1.75
228 229 7.562135 TGCTCGTAAACTAAGAAAGGGATTAT 58.438 34.615 0.00 0.00 0.00 1.28
229 230 8.698210 TGCTCGTAAACTAAGAAAGGGATTATA 58.302 33.333 0.00 0.00 0.00 0.98
230 231 9.194271 GCTCGTAAACTAAGAAAGGGATTATAG 57.806 37.037 0.00 0.00 0.00 1.31
233 234 9.813446 CGTAAACTAAGAAAGGGATTATAGTGT 57.187 33.333 0.00 0.00 0.00 3.55
255 256 2.018542 CGAAGGTAAATGCGGGAAGA 57.981 50.000 0.00 0.00 0.00 2.87
256 257 2.352388 CGAAGGTAAATGCGGGAAGAA 58.648 47.619 0.00 0.00 0.00 2.52
257 258 2.745281 CGAAGGTAAATGCGGGAAGAAA 59.255 45.455 0.00 0.00 0.00 2.52
258 259 3.377172 CGAAGGTAAATGCGGGAAGAAAT 59.623 43.478 0.00 0.00 0.00 2.17
259 260 4.672409 GAAGGTAAATGCGGGAAGAAATG 58.328 43.478 0.00 0.00 0.00 2.32
260 261 3.963129 AGGTAAATGCGGGAAGAAATGA 58.037 40.909 0.00 0.00 0.00 2.57
261 262 4.340617 AGGTAAATGCGGGAAGAAATGAA 58.659 39.130 0.00 0.00 0.00 2.57
262 263 4.770010 AGGTAAATGCGGGAAGAAATGAAA 59.230 37.500 0.00 0.00 0.00 2.69
263 264 5.245075 AGGTAAATGCGGGAAGAAATGAAAA 59.755 36.000 0.00 0.00 0.00 2.29
264 265 5.347635 GGTAAATGCGGGAAGAAATGAAAAC 59.652 40.000 0.00 0.00 0.00 2.43
265 266 4.871933 AATGCGGGAAGAAATGAAAACT 57.128 36.364 0.00 0.00 0.00 2.66
266 267 3.915437 TGCGGGAAGAAATGAAAACTC 57.085 42.857 0.00 0.00 0.00 3.01
357 358 7.130269 AGTGTTTAGCTTTGTATTTTCGTGAC 58.870 34.615 0.00 0.00 0.00 3.67
359 360 3.806316 AGCTTTGTATTTTCGTGACGG 57.194 42.857 4.70 0.00 0.00 4.79
361 362 3.185797 AGCTTTGTATTTTCGTGACGGTC 59.814 43.478 4.70 0.00 0.00 4.79
399 405 8.094798 TGTTTTTCTGTATTTGCTAGTCGAAT 57.905 30.769 0.00 0.00 33.46 3.34
407 413 6.537301 TGTATTTGCTAGTCGAATTTACCCTG 59.463 38.462 0.00 0.00 31.39 4.45
408 414 3.536956 TGCTAGTCGAATTTACCCTGG 57.463 47.619 0.00 0.00 0.00 4.45
409 415 3.101437 TGCTAGTCGAATTTACCCTGGA 58.899 45.455 0.00 0.00 0.00 3.86
422 428 1.143838 CCTGGAATGATCGACGGCA 59.856 57.895 0.00 0.00 0.00 5.69
423 429 0.877649 CCTGGAATGATCGACGGCAG 60.878 60.000 0.00 0.00 0.00 4.85
425 431 1.595382 GGAATGATCGACGGCAGGG 60.595 63.158 0.00 0.00 0.00 4.45
432 490 0.104304 ATCGACGGCAGGGATTACAC 59.896 55.000 0.00 0.00 0.00 2.90
447 505 4.326766 CACGGCCACACCTTTGCG 62.327 66.667 2.24 0.00 35.61 4.85
448 506 4.868116 ACGGCCACACCTTTGCGT 62.868 61.111 2.24 0.00 35.61 5.24
449 507 2.666862 CGGCCACACCTTTGCGTA 60.667 61.111 2.24 0.00 35.61 4.42
450 508 2.038269 CGGCCACACCTTTGCGTAT 61.038 57.895 2.24 0.00 35.61 3.06
451 509 1.582610 CGGCCACACCTTTGCGTATT 61.583 55.000 2.24 0.00 35.61 1.89
463 521 4.516698 CCTTTGCGTATTCTATTCTGGCAT 59.483 41.667 0.00 0.00 0.00 4.40
471 529 4.844998 TTCTATTCTGGCATCTCTCTCG 57.155 45.455 0.00 0.00 0.00 4.04
480 538 1.472376 GCATCTCTCTCGTTTCCCCTG 60.472 57.143 0.00 0.00 0.00 4.45
507 565 2.126071 GAGTAGACGCGGCAGCAA 60.126 61.111 17.71 0.00 45.49 3.91
523 581 3.476552 CAGCAACCCACAAGAGTTTCTA 58.523 45.455 0.00 0.00 0.00 2.10
528 586 6.098266 AGCAACCCACAAGAGTTTCTAAAAAT 59.902 34.615 0.00 0.00 0.00 1.82
531 589 9.463443 CAACCCACAAGAGTTTCTAAAAATAAG 57.537 33.333 0.00 0.00 0.00 1.73
532 590 7.658261 ACCCACAAGAGTTTCTAAAAATAAGC 58.342 34.615 0.00 0.00 0.00 3.09
533 591 7.505923 ACCCACAAGAGTTTCTAAAAATAAGCT 59.494 33.333 0.00 0.00 0.00 3.74
534 592 7.809806 CCCACAAGAGTTTCTAAAAATAAGCTG 59.190 37.037 0.00 0.00 0.00 4.24
535 593 7.327032 CCACAAGAGTTTCTAAAAATAAGCTGC 59.673 37.037 0.00 0.00 0.00 5.25
536 594 7.327032 CACAAGAGTTTCTAAAAATAAGCTGCC 59.673 37.037 0.00 0.00 0.00 4.85
537 595 6.516739 AGAGTTTCTAAAAATAAGCTGCCC 57.483 37.500 0.00 0.00 0.00 5.36
538 596 6.010219 AGAGTTTCTAAAAATAAGCTGCCCA 58.990 36.000 0.00 0.00 0.00 5.36
545 631 3.942130 AAATAAGCTGCCCACAAGAAC 57.058 42.857 0.00 0.00 0.00 3.01
552 638 2.617274 GCCCACAAGAACAGCGACC 61.617 63.158 0.00 0.00 0.00 4.79
556 653 0.249868 CACAAGAACAGCGACCTCCA 60.250 55.000 0.00 0.00 0.00 3.86
559 656 1.122019 AAGAACAGCGACCTCCACCT 61.122 55.000 0.00 0.00 0.00 4.00
571 668 1.608717 CTCCACCTCCTCACCTTCCG 61.609 65.000 0.00 0.00 0.00 4.30
572 669 2.266055 CACCTCCTCACCTTCCGC 59.734 66.667 0.00 0.00 0.00 5.54
573 670 2.120718 ACCTCCTCACCTTCCGCT 59.879 61.111 0.00 0.00 0.00 5.52
574 671 0.970937 CACCTCCTCACCTTCCGCTA 60.971 60.000 0.00 0.00 0.00 4.26
575 672 0.252103 ACCTCCTCACCTTCCGCTAA 60.252 55.000 0.00 0.00 0.00 3.09
576 673 0.461961 CCTCCTCACCTTCCGCTAAG 59.538 60.000 0.00 0.00 34.73 2.18
583 680 4.808649 CTTCCGCTAAGGGTCGTC 57.191 61.111 0.00 0.00 41.52 4.20
584 681 1.141234 CTTCCGCTAAGGGTCGTCC 59.859 63.158 0.00 0.00 41.52 4.79
689 787 1.347707 TCCGATCAAACAGGAGTGCTT 59.652 47.619 0.00 0.00 0.00 3.91
919 1356 2.292267 CAGATTTCAGAATCCCACCCG 58.708 52.381 0.00 0.00 42.16 5.28
947 1388 1.153756 CCCACCCTCCAGCAAGTTT 59.846 57.895 0.00 0.00 0.00 2.66
949 1390 1.237285 CCACCCTCCAGCAAGTTTCG 61.237 60.000 0.00 0.00 0.00 3.46
958 1399 2.288457 CCAGCAAGTTTCGTCTCTCTCA 60.288 50.000 0.00 0.00 0.00 3.27
962 1403 3.615110 GCAAGTTTCGTCTCTCTCATCCA 60.615 47.826 0.00 0.00 0.00 3.41
973 1414 0.712979 TCTCATCCACACCTCCTCCT 59.287 55.000 0.00 0.00 0.00 3.69
975 1416 0.712979 TCATCCACACCTCCTCCTCT 59.287 55.000 0.00 0.00 0.00 3.69
976 1417 1.079490 TCATCCACACCTCCTCCTCTT 59.921 52.381 0.00 0.00 0.00 2.85
979 1420 0.252467 CCACACCTCCTCCTCTTCCT 60.252 60.000 0.00 0.00 0.00 3.36
980 1421 1.190643 CACACCTCCTCCTCTTCCTC 58.809 60.000 0.00 0.00 0.00 3.71
981 1422 0.041982 ACACCTCCTCCTCTTCCTCC 59.958 60.000 0.00 0.00 0.00 4.30
982 1423 1.040339 CACCTCCTCCTCTTCCTCCG 61.040 65.000 0.00 0.00 0.00 4.63
983 1424 2.131067 CCTCCTCCTCTTCCTCCGC 61.131 68.421 0.00 0.00 0.00 5.54
984 1425 1.076339 CTCCTCCTCTTCCTCCGCT 60.076 63.158 0.00 0.00 0.00 5.52
985 1426 0.686112 CTCCTCCTCTTCCTCCGCTT 60.686 60.000 0.00 0.00 0.00 4.68
986 1427 0.684805 TCCTCCTCTTCCTCCGCTTC 60.685 60.000 0.00 0.00 0.00 3.86
987 1428 1.435515 CTCCTCTTCCTCCGCTTCG 59.564 63.158 0.00 0.00 0.00 3.79
993 1434 1.889530 CTTCCTCCGCTTCGTCCCTT 61.890 60.000 0.00 0.00 0.00 3.95
1087 1528 0.680061 CCCCATCCTACCGCTAAGAC 59.320 60.000 0.00 0.00 0.00 3.01
1113 1554 2.692709 ATCCTCCTCCTCGATCATGT 57.307 50.000 0.00 0.00 0.00 3.21
1124 1565 3.181520 CCTCGATCATGTTTTGGTTCGAC 60.182 47.826 0.00 0.00 36.29 4.20
1246 1695 7.346175 AGTCACCCAAGGTATACATACATACAA 59.654 37.037 5.01 0.00 32.11 2.41
1363 1812 2.590821 GCCCATAGCATTTCCTGTCAT 58.409 47.619 0.00 0.00 42.97 3.06
1419 1868 3.058224 GCTGCTTTGTCCTAATTGAACGT 60.058 43.478 0.00 0.00 0.00 3.99
1464 1913 4.451629 AGGATACGTACTGTGAAACCAG 57.548 45.455 0.00 0.00 46.39 4.00
1530 1987 3.706600 ACTTCCTATTTAACGCCCACA 57.293 42.857 0.00 0.00 0.00 4.17
1531 1988 3.340928 ACTTCCTATTTAACGCCCACAC 58.659 45.455 0.00 0.00 0.00 3.82
1547 2004 1.447838 CACCGGTCATGAACCTCCG 60.448 63.158 2.59 13.96 46.87 4.63
1568 2025 3.650139 GAGAAATTGGATCATGCATGCC 58.350 45.455 22.25 17.94 0.00 4.40
1689 2164 9.739276 TGTGGACAATGGATATAAGGAATATTC 57.261 33.333 6.93 6.93 30.53 1.75
1717 2192 4.184649 TCTTTCCTTCCTGCTTTTCCTT 57.815 40.909 0.00 0.00 0.00 3.36
1748 2224 6.192044 AGGAGGAATAATAGCTAGCTAGGAC 58.808 44.000 27.42 16.34 31.45 3.85
1846 2348 1.285641 CATGGTGGGTTGTTGACGC 59.714 57.895 0.00 0.00 41.31 5.19
1850 2352 1.525077 GTGGGTTGTTGACGCTCCA 60.525 57.895 0.00 0.00 41.48 3.86
1900 2410 1.420514 TGTTGAATTACCGGTCCCACA 59.579 47.619 12.40 5.25 0.00 4.17
1903 2413 1.909986 TGAATTACCGGTCCCACATCA 59.090 47.619 12.40 5.82 0.00 3.07
1959 2547 6.037062 TCCGCACTATCACATTTGAACATAAG 59.963 38.462 0.00 0.00 34.61 1.73
2043 2636 2.540769 CGCACAAACAAGAACCGTGAAT 60.541 45.455 0.00 0.00 0.00 2.57
2055 2648 3.926058 ACCGTGAATAGGGCATAAAGT 57.074 42.857 0.00 0.00 35.21 2.66
2060 2654 5.300752 CGTGAATAGGGCATAAAGTCATCT 58.699 41.667 0.00 0.00 0.00 2.90
2103 2697 3.804036 TGCGTACATAATTAAGCAGGCT 58.196 40.909 7.03 0.00 32.41 4.58
2108 2702 6.213677 CGTACATAATTAAGCAGGCTCTACA 58.786 40.000 0.00 0.00 0.00 2.74
2222 2847 2.430921 CGTCGGGTCTGCTGTCAC 60.431 66.667 0.00 0.00 0.00 3.67
2266 2891 1.348036 GGTAGTTTGGTGCTCTGGTCT 59.652 52.381 0.00 0.00 0.00 3.85
2267 2892 2.224548 GGTAGTTTGGTGCTCTGGTCTT 60.225 50.000 0.00 0.00 0.00 3.01
2293 4326 1.206371 GGAAGAACCTTGCCGCTACTA 59.794 52.381 0.00 0.00 35.41 1.82
2294 4327 2.354403 GGAAGAACCTTGCCGCTACTAA 60.354 50.000 0.00 0.00 35.41 2.24
2302 4335 0.675522 TGCCGCTACTAACTTTGCCC 60.676 55.000 0.00 0.00 0.00 5.36
2349 4423 6.649141 GCAAAATTTATTTCCGGTTTTCTCCT 59.351 34.615 0.00 0.00 0.00 3.69
2369 4443 0.806241 GCCGGACCGAATAAAAAGCA 59.194 50.000 17.49 0.00 0.00 3.91
2370 4444 1.200484 GCCGGACCGAATAAAAAGCAA 59.800 47.619 17.49 0.00 0.00 3.91
2508 4731 6.337853 GCTAAGCCATAATAGAATAGCGTG 57.662 41.667 0.00 0.00 0.00 5.34
2523 4746 1.078709 GCGTGTCTGCTTATCTGCAA 58.921 50.000 0.00 0.00 42.83 4.08
2546 4769 7.061441 GCAACAACTGTGAAATGTTCTCATATG 59.939 37.037 0.00 0.00 35.22 1.78
2553 4776 5.801947 GTGAAATGTTCTCATATGTTGGTGC 59.198 40.000 1.90 0.00 33.49 5.01
3150 6286 6.908825 TCTACCATTTTGTACTTTGCATGTC 58.091 36.000 0.00 0.00 0.00 3.06
3177 6313 5.668558 AGTTGATTAACTCGTTGACCAAC 57.331 39.130 4.19 4.19 43.53 3.77
3205 6424 5.467399 TGATATGTTTCTGAACCGTTCGTTT 59.533 36.000 6.78 0.00 33.74 3.60
3235 6454 3.103911 GAGGCCGTCAACGTGTCG 61.104 66.667 0.00 0.00 37.74 4.35
3344 6577 0.948623 CGGCAAGTTCGACACATGGA 60.949 55.000 0.00 0.00 0.00 3.41
3380 6614 1.675641 GCCACCCATCGCTCAACTT 60.676 57.895 0.00 0.00 0.00 2.66
3388 6626 3.182967 CCATCGCTCAACTTCTACAGAC 58.817 50.000 0.00 0.00 0.00 3.51
3389 6627 3.367395 CCATCGCTCAACTTCTACAGACA 60.367 47.826 0.00 0.00 0.00 3.41
3430 6669 6.928348 TCATATCAAATATACCGTGGGACT 57.072 37.500 0.00 0.00 0.00 3.85
3536 6779 9.586435 CAATTTTGTAATAAGGGGTCAAATCTC 57.414 33.333 0.00 0.00 0.00 2.75
3719 6971 6.292328 GCATTGGCTAGTTGTTTCAAACTTTC 60.292 38.462 1.10 0.00 40.77 2.62
3747 7000 4.817517 ACGAACAAATGACCGTTCTAGAT 58.182 39.130 0.00 0.00 39.49 1.98
3801 7061 4.296690 GCATATGGACTGTTAGACGGTAC 58.703 47.826 4.56 0.00 37.93 3.34
3899 7169 4.040461 ACTGGCTAGCTGTTTCAGACTTTA 59.960 41.667 20.47 0.00 32.44 1.85
3900 7170 4.968259 TGGCTAGCTGTTTCAGACTTTAA 58.032 39.130 15.72 0.00 32.44 1.52
3935 7212 0.899720 ATCGTTCTAGACCCGCCAAA 59.100 50.000 6.20 0.00 0.00 3.28
3936 7213 0.680618 TCGTTCTAGACCCGCCAAAA 59.319 50.000 6.20 0.00 0.00 2.44
3943 7220 0.479378 AGACCCGCCAAAACCCTAAA 59.521 50.000 0.00 0.00 0.00 1.85
3962 7239 9.533831 ACCCTAAATTTTCTTAGATGAACACAT 57.466 29.630 0.00 0.00 31.59 3.21
4005 7286 2.480419 ACCTGAGTTTGCTCGAAAATCG 59.520 45.455 0.00 0.00 44.48 3.34
4053 7334 2.358898 TGAAAGCTTTGAGGTCTTGCAC 59.641 45.455 18.30 0.00 0.00 4.57
4066 7347 3.684788 GGTCTTGCACGACTATTGACATT 59.315 43.478 21.17 0.00 34.38 2.71
4071 7352 3.431912 TGCACGACTATTGACATTGACAC 59.568 43.478 0.00 0.00 0.00 3.67
4097 7378 6.261158 TGAAAAATGACAGTCGGTGATTTACA 59.739 34.615 1.43 3.42 41.57 2.41
4146 7427 3.829601 TCATTTTACAAAGGGATGGCGTT 59.170 39.130 0.00 0.00 0.00 4.84
4161 7442 3.945346 TGGCGTTTCTAGGCTAATTTCA 58.055 40.909 0.00 0.00 35.54 2.69
4176 7457 1.522668 TTTCATCGGTGCCTCACAAG 58.477 50.000 0.00 0.00 35.86 3.16
4184 7465 1.453155 GTGCCTCACAAGTGGTATGG 58.547 55.000 0.00 0.26 34.08 2.74
4196 7477 2.692041 AGTGGTATGGTAGTTCTACGGC 59.308 50.000 4.26 0.00 0.00 5.68
4226 7507 4.428294 AGTCATGGGATGTCACCTTATG 57.572 45.455 0.00 0.00 0.00 1.90
4227 7508 3.782523 AGTCATGGGATGTCACCTTATGT 59.217 43.478 0.00 0.00 0.00 2.29
4228 7509 4.130118 GTCATGGGATGTCACCTTATGTC 58.870 47.826 0.00 0.00 0.00 3.06
4229 7510 3.136443 TCATGGGATGTCACCTTATGTCC 59.864 47.826 0.00 0.00 0.00 4.02
4230 7511 1.484653 TGGGATGTCACCTTATGTCCG 59.515 52.381 0.00 0.00 0.00 4.79
4231 7512 1.760613 GGGATGTCACCTTATGTCCGA 59.239 52.381 0.00 0.00 0.00 4.55
4232 7513 2.224066 GGGATGTCACCTTATGTCCGAG 60.224 54.545 0.00 0.00 0.00 4.63
4233 7514 2.224066 GGATGTCACCTTATGTCCGAGG 60.224 54.545 0.00 0.00 39.02 4.63
4234 7515 1.191535 TGTCACCTTATGTCCGAGGG 58.808 55.000 0.00 0.00 37.36 4.30
4235 7516 0.464452 GTCACCTTATGTCCGAGGGG 59.536 60.000 0.00 0.00 37.82 4.79
4236 7517 0.042131 TCACCTTATGTCCGAGGGGT 59.958 55.000 0.00 0.00 37.71 4.95
4237 7518 0.464452 CACCTTATGTCCGAGGGGTC 59.536 60.000 0.00 0.00 37.36 4.46
4238 7519 0.338814 ACCTTATGTCCGAGGGGTCT 59.661 55.000 0.00 0.00 37.36 3.85
4239 7520 1.041437 CCTTATGTCCGAGGGGTCTC 58.959 60.000 0.00 0.00 36.69 3.36
4240 7521 1.688311 CCTTATGTCCGAGGGGTCTCA 60.688 57.143 0.00 0.00 39.95 3.27
4241 7522 1.683917 CTTATGTCCGAGGGGTCTCAG 59.316 57.143 0.00 0.00 39.95 3.35
4242 7523 0.106167 TATGTCCGAGGGGTCTCAGG 60.106 60.000 0.00 0.00 39.95 3.86
4243 7524 2.760385 GTCCGAGGGGTCTCAGGG 60.760 72.222 0.00 0.00 39.95 4.45
4244 7525 4.075793 TCCGAGGGGTCTCAGGGG 62.076 72.222 0.00 0.00 39.95 4.79
4246 7527 4.400251 CGAGGGGTCTCAGGGGGT 62.400 72.222 0.00 0.00 39.95 4.95
4247 7528 2.689034 GAGGGGTCTCAGGGGGTG 60.689 72.222 0.00 0.00 39.74 4.61
4248 7529 3.542602 AGGGGTCTCAGGGGGTGT 61.543 66.667 0.00 0.00 0.00 4.16
4249 7530 2.531942 GGGGTCTCAGGGGGTGTT 60.532 66.667 0.00 0.00 0.00 3.32
4250 7531 2.160853 GGGGTCTCAGGGGGTGTTT 61.161 63.158 0.00 0.00 0.00 2.83
4251 7532 1.074951 GGGTCTCAGGGGGTGTTTG 59.925 63.158 0.00 0.00 0.00 2.93
4252 7533 1.716028 GGGTCTCAGGGGGTGTTTGT 61.716 60.000 0.00 0.00 0.00 2.83
4253 7534 0.185175 GGTCTCAGGGGGTGTTTGTT 59.815 55.000 0.00 0.00 0.00 2.83
4254 7535 1.411074 GGTCTCAGGGGGTGTTTGTTT 60.411 52.381 0.00 0.00 0.00 2.83
4255 7536 2.384828 GTCTCAGGGGGTGTTTGTTTT 58.615 47.619 0.00 0.00 0.00 2.43
4256 7537 2.361119 GTCTCAGGGGGTGTTTGTTTTC 59.639 50.000 0.00 0.00 0.00 2.29
4257 7538 2.024846 TCTCAGGGGGTGTTTGTTTTCA 60.025 45.455 0.00 0.00 0.00 2.69
4258 7539 2.965147 CTCAGGGGGTGTTTGTTTTCAT 59.035 45.455 0.00 0.00 0.00 2.57
4259 7540 2.697751 TCAGGGGGTGTTTGTTTTCATG 59.302 45.455 0.00 0.00 0.00 3.07
4260 7541 2.046292 AGGGGGTGTTTGTTTTCATGG 58.954 47.619 0.00 0.00 0.00 3.66
4261 7542 2.043227 GGGGGTGTTTGTTTTCATGGA 58.957 47.619 0.00 0.00 0.00 3.41
4262 7543 2.224185 GGGGGTGTTTGTTTTCATGGAC 60.224 50.000 0.00 0.00 0.00 4.02
4263 7544 2.698274 GGGGTGTTTGTTTTCATGGACT 59.302 45.455 0.00 0.00 0.00 3.85
4264 7545 3.133901 GGGGTGTTTGTTTTCATGGACTT 59.866 43.478 0.00 0.00 0.00 3.01
4265 7546 4.383661 GGGGTGTTTGTTTTCATGGACTTT 60.384 41.667 0.00 0.00 0.00 2.66
4266 7547 5.182487 GGGTGTTTGTTTTCATGGACTTTT 58.818 37.500 0.00 0.00 0.00 2.27
4267 7548 5.645929 GGGTGTTTGTTTTCATGGACTTTTT 59.354 36.000 0.00 0.00 0.00 1.94
4289 7570 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
4290 7571 6.742559 TTGTGTAGGGACTAGAAAAAGTCT 57.257 37.500 0.00 0.00 44.14 3.24
4291 7572 6.742559 TGTGTAGGGACTAGAAAAAGTCTT 57.257 37.500 0.00 0.00 44.14 3.01
4292 7573 7.133133 TGTGTAGGGACTAGAAAAAGTCTTT 57.867 36.000 0.00 0.00 44.14 2.52
4293 7574 7.215085 TGTGTAGGGACTAGAAAAAGTCTTTC 58.785 38.462 0.00 0.00 44.14 2.62
4294 7575 7.070821 TGTGTAGGGACTAGAAAAAGTCTTTCT 59.929 37.037 0.00 0.00 44.14 2.52
4295 7576 7.932491 GTGTAGGGACTAGAAAAAGTCTTTCTT 59.068 37.037 0.00 0.00 44.14 2.52
4296 7577 9.151177 TGTAGGGACTAGAAAAAGTCTTTCTTA 57.849 33.333 0.00 0.00 44.14 2.10
4297 7578 9.642327 GTAGGGACTAGAAAAAGTCTTTCTTAG 57.358 37.037 0.00 4.22 44.14 2.18
4298 7579 8.493787 AGGGACTAGAAAAAGTCTTTCTTAGA 57.506 34.615 0.00 0.00 44.42 2.10
4299 7580 8.590204 AGGGACTAGAAAAAGTCTTTCTTAGAG 58.410 37.037 0.00 0.00 44.42 2.43
4300 7581 8.586744 GGGACTAGAAAAAGTCTTTCTTAGAGA 58.413 37.037 0.00 0.00 44.42 3.10
4301 7582 9.414295 GGACTAGAAAAAGTCTTTCTTAGAGAC 57.586 37.037 0.00 0.00 44.42 3.36
4325 7606 4.376225 TTTTATCAAACGGGAGGGACTT 57.624 40.909 0.00 0.00 41.55 3.01
4326 7607 4.376225 TTTATCAAACGGGAGGGACTTT 57.624 40.909 0.00 0.00 41.55 2.66
4327 7608 2.971901 ATCAAACGGGAGGGACTTTT 57.028 45.000 0.00 0.00 41.55 2.27
4328 7609 2.740506 TCAAACGGGAGGGACTTTTT 57.259 45.000 0.00 0.00 41.55 1.94
4329 7610 3.860968 TCAAACGGGAGGGACTTTTTA 57.139 42.857 0.00 0.00 41.55 1.52
4330 7611 3.746940 TCAAACGGGAGGGACTTTTTAG 58.253 45.455 0.00 0.00 41.55 1.85
4331 7612 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
4332 7613 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
4333 7614 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
4334 7615 1.065636 CGGGAGGGACTTTTTAGGGAC 60.066 57.143 0.00 0.00 41.55 4.46
4335 7616 2.276391 GGGAGGGACTTTTTAGGGACT 58.724 52.381 0.00 0.00 41.55 3.85
4336 7617 3.457836 GGGAGGGACTTTTTAGGGACTA 58.542 50.000 0.00 0.00 41.55 2.59
4337 7618 3.848377 GGGAGGGACTTTTTAGGGACTAA 59.152 47.826 0.00 0.00 45.97 2.24
4350 7631 4.236527 AGGGACTAAACTAGGCATTTGG 57.763 45.455 0.00 0.00 36.02 3.28
4351 7632 3.053619 AGGGACTAAACTAGGCATTTGGG 60.054 47.826 0.00 0.00 36.02 4.12
4352 7633 3.053917 GGGACTAAACTAGGCATTTGGGA 60.054 47.826 0.00 0.00 34.70 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.341078 TGAGCATTCAATATGTTTAGCATCTAA 57.659 29.630 0.00 0.00 38.94 2.10
4 5 7.255381 GGTGAGCATTCAATATGTTTAGCATCT 60.255 37.037 0.00 0.00 35.63 2.90
5 6 6.860023 GGTGAGCATTCAATATGTTTAGCATC 59.140 38.462 0.00 0.00 35.63 3.91
6 7 6.321945 TGGTGAGCATTCAATATGTTTAGCAT 59.678 34.615 0.00 0.00 37.02 3.79
7 8 5.651576 TGGTGAGCATTCAATATGTTTAGCA 59.348 36.000 0.00 0.00 34.49 3.49
8 9 6.135290 TGGTGAGCATTCAATATGTTTAGC 57.865 37.500 0.00 0.00 34.49 3.09
9 10 8.407832 TCAATGGTGAGCATTCAATATGTTTAG 58.592 33.333 6.93 0.00 34.49 1.85
10 11 8.291191 TCAATGGTGAGCATTCAATATGTTTA 57.709 30.769 6.93 0.00 34.49 2.01
11 12 7.172868 TCAATGGTGAGCATTCAATATGTTT 57.827 32.000 6.93 0.00 34.49 2.83
12 13 6.778834 TCAATGGTGAGCATTCAATATGTT 57.221 33.333 6.93 0.00 34.49 2.71
13 14 6.682113 GCTTCAATGGTGAGCATTCAATATGT 60.682 38.462 6.93 0.00 34.49 2.29
14 15 5.690409 GCTTCAATGGTGAGCATTCAATATG 59.310 40.000 6.93 0.00 34.49 1.78
15 16 5.361571 TGCTTCAATGGTGAGCATTCAATAT 59.638 36.000 6.93 0.00 34.82 1.28
16 17 4.705991 TGCTTCAATGGTGAGCATTCAATA 59.294 37.500 6.93 0.00 34.82 1.90
17 18 3.512329 TGCTTCAATGGTGAGCATTCAAT 59.488 39.130 6.93 0.00 34.82 2.57
18 19 2.892215 TGCTTCAATGGTGAGCATTCAA 59.108 40.909 6.93 0.00 34.82 2.69
19 20 2.516906 TGCTTCAATGGTGAGCATTCA 58.483 42.857 6.93 0.00 34.82 2.57
20 21 3.581024 TTGCTTCAATGGTGAGCATTC 57.419 42.857 6.93 0.00 37.58 2.67
21 22 3.767673 AGATTGCTTCAATGGTGAGCATT 59.232 39.130 3.70 3.70 37.58 3.56
22 23 3.362706 AGATTGCTTCAATGGTGAGCAT 58.637 40.909 7.46 0.00 37.58 3.79
23 24 2.799017 AGATTGCTTCAATGGTGAGCA 58.201 42.857 0.00 3.51 36.65 4.26
24 25 3.863142 AAGATTGCTTCAATGGTGAGC 57.137 42.857 0.00 0.00 33.90 4.26
25 26 4.921515 CACAAAGATTGCTTCAATGGTGAG 59.078 41.667 0.00 0.00 33.90 3.51
26 27 4.262121 CCACAAAGATTGCTTCAATGGTGA 60.262 41.667 0.00 0.00 33.90 4.02
27 28 3.991773 CCACAAAGATTGCTTCAATGGTG 59.008 43.478 0.00 0.00 33.90 4.17
28 29 3.642848 ACCACAAAGATTGCTTCAATGGT 59.357 39.130 0.00 0.00 38.06 3.55
29 30 4.261578 ACCACAAAGATTGCTTCAATGG 57.738 40.909 0.00 0.00 33.90 3.16
30 31 4.449743 CCAACCACAAAGATTGCTTCAATG 59.550 41.667 0.00 0.00 33.90 2.82
31 32 4.344679 TCCAACCACAAAGATTGCTTCAAT 59.655 37.500 0.00 0.00 36.72 2.57
32 33 3.703556 TCCAACCACAAAGATTGCTTCAA 59.296 39.130 0.00 0.00 31.82 2.69
33 34 3.295093 TCCAACCACAAAGATTGCTTCA 58.705 40.909 0.00 0.00 31.82 3.02
34 35 4.525912 ATCCAACCACAAAGATTGCTTC 57.474 40.909 0.00 0.00 31.82 3.86
35 36 4.344679 TCAATCCAACCACAAAGATTGCTT 59.655 37.500 6.69 0.00 43.33 3.91
36 37 3.896888 TCAATCCAACCACAAAGATTGCT 59.103 39.130 6.69 0.00 43.33 3.91
37 38 3.989817 GTCAATCCAACCACAAAGATTGC 59.010 43.478 6.69 0.33 43.33 3.56
38 39 5.199024 TGTCAATCCAACCACAAAGATTG 57.801 39.130 5.44 5.44 44.44 2.67
39 40 5.539574 TCATGTCAATCCAACCACAAAGATT 59.460 36.000 0.00 0.00 0.00 2.40
40 41 5.078949 TCATGTCAATCCAACCACAAAGAT 58.921 37.500 0.00 0.00 0.00 2.40
41 42 4.468713 TCATGTCAATCCAACCACAAAGA 58.531 39.130 0.00 0.00 0.00 2.52
42 43 4.852134 TCATGTCAATCCAACCACAAAG 57.148 40.909 0.00 0.00 0.00 2.77
43 44 5.511031 CCATTCATGTCAATCCAACCACAAA 60.511 40.000 0.00 0.00 0.00 2.83
44 45 4.021280 CCATTCATGTCAATCCAACCACAA 60.021 41.667 0.00 0.00 0.00 3.33
45 46 3.510753 CCATTCATGTCAATCCAACCACA 59.489 43.478 0.00 0.00 0.00 4.17
46 47 3.763360 TCCATTCATGTCAATCCAACCAC 59.237 43.478 0.00 0.00 0.00 4.16
47 48 4.044946 TCCATTCATGTCAATCCAACCA 57.955 40.909 0.00 0.00 0.00 3.67
48 49 4.202182 CCATCCATTCATGTCAATCCAACC 60.202 45.833 0.00 0.00 0.00 3.77
49 50 4.403432 ACCATCCATTCATGTCAATCCAAC 59.597 41.667 0.00 0.00 0.00 3.77
50 51 4.612401 ACCATCCATTCATGTCAATCCAA 58.388 39.130 0.00 0.00 0.00 3.53
51 52 4.254039 ACCATCCATTCATGTCAATCCA 57.746 40.909 0.00 0.00 0.00 3.41
52 53 4.646040 TCAACCATCCATTCATGTCAATCC 59.354 41.667 0.00 0.00 0.00 3.01
53 54 5.591472 TCTCAACCATCCATTCATGTCAATC 59.409 40.000 0.00 0.00 0.00 2.67
54 55 5.512298 TCTCAACCATCCATTCATGTCAAT 58.488 37.500 0.00 0.00 0.00 2.57
55 56 4.920999 TCTCAACCATCCATTCATGTCAA 58.079 39.130 0.00 0.00 0.00 3.18
56 57 4.573021 TCTCAACCATCCATTCATGTCA 57.427 40.909 0.00 0.00 0.00 3.58
57 58 6.769822 ACTAATCTCAACCATCCATTCATGTC 59.230 38.462 0.00 0.00 0.00 3.06
58 59 6.666678 ACTAATCTCAACCATCCATTCATGT 58.333 36.000 0.00 0.00 0.00 3.21
59 60 7.283807 TGAACTAATCTCAACCATCCATTCATG 59.716 37.037 0.00 0.00 0.00 3.07
60 61 7.348815 TGAACTAATCTCAACCATCCATTCAT 58.651 34.615 0.00 0.00 0.00 2.57
61 62 6.720309 TGAACTAATCTCAACCATCCATTCA 58.280 36.000 0.00 0.00 0.00 2.57
62 63 7.630242 TTGAACTAATCTCAACCATCCATTC 57.370 36.000 0.00 0.00 0.00 2.67
63 64 8.230472 GATTGAACTAATCTCAACCATCCATT 57.770 34.615 0.00 0.00 41.61 3.16
64 65 7.814264 GATTGAACTAATCTCAACCATCCAT 57.186 36.000 0.00 0.00 41.61 3.41
76 77 7.106239 TCTCAAAGGGACAGATTGAACTAATC 58.894 38.462 0.00 0.00 44.52 1.75
77 78 7.020827 TCTCAAAGGGACAGATTGAACTAAT 57.979 36.000 0.00 0.00 33.08 1.73
78 79 6.433847 TCTCAAAGGGACAGATTGAACTAA 57.566 37.500 0.00 0.00 33.08 2.24
79 80 6.627087 ATCTCAAAGGGACAGATTGAACTA 57.373 37.500 0.00 0.00 33.08 2.24
80 81 4.982241 TCTCAAAGGGACAGATTGAACT 57.018 40.909 0.00 0.00 33.08 3.01
81 82 6.581171 AAATCTCAAAGGGACAGATTGAAC 57.419 37.500 0.00 0.00 37.04 3.18
82 83 7.506938 AGAAAAATCTCAAAGGGACAGATTGAA 59.493 33.333 0.00 0.00 37.04 2.69
83 84 7.006509 AGAAAAATCTCAAAGGGACAGATTGA 58.993 34.615 0.00 0.00 37.04 2.57
84 85 7.224522 AGAAAAATCTCAAAGGGACAGATTG 57.775 36.000 0.00 0.00 37.04 2.67
85 86 7.846101 AAGAAAAATCTCAAAGGGACAGATT 57.154 32.000 0.00 0.00 38.30 2.40
91 92 9.768215 ACCAATATAAGAAAAATCTCAAAGGGA 57.232 29.630 0.00 0.00 0.00 4.20
92 93 9.807649 CACCAATATAAGAAAAATCTCAAAGGG 57.192 33.333 0.00 0.00 0.00 3.95
93 94 9.305925 GCACCAATATAAGAAAAATCTCAAAGG 57.694 33.333 0.00 0.00 0.00 3.11
94 95 9.859427 TGCACCAATATAAGAAAAATCTCAAAG 57.141 29.630 0.00 0.00 0.00 2.77
95 96 9.859427 CTGCACCAATATAAGAAAAATCTCAAA 57.141 29.630 0.00 0.00 0.00 2.69
96 97 9.241919 TCTGCACCAATATAAGAAAAATCTCAA 57.758 29.630 0.00 0.00 0.00 3.02
97 98 8.806429 TCTGCACCAATATAAGAAAAATCTCA 57.194 30.769 0.00 0.00 0.00 3.27
113 114 8.637099 GCATCTATCTATCTATATCTGCACCAA 58.363 37.037 0.00 0.00 0.00 3.67
114 115 7.781693 TGCATCTATCTATCTATATCTGCACCA 59.218 37.037 0.00 0.00 30.17 4.17
115 116 8.175925 TGCATCTATCTATCTATATCTGCACC 57.824 38.462 0.00 0.00 30.17 5.01
116 117 9.681692 CTTGCATCTATCTATCTATATCTGCAC 57.318 37.037 0.00 0.00 32.67 4.57
117 118 8.858094 CCTTGCATCTATCTATCTATATCTGCA 58.142 37.037 0.00 0.00 31.82 4.41
118 119 9.076781 TCCTTGCATCTATCTATCTATATCTGC 57.923 37.037 0.00 0.00 0.00 4.26
130 131 9.540538 AGTACATAATAGTCCTTGCATCTATCT 57.459 33.333 0.00 0.00 0.00 1.98
134 135 9.686683 AAAAAGTACATAATAGTCCTTGCATCT 57.313 29.630 0.00 0.00 0.00 2.90
179 180 8.523658 GCAAAGTTGGTATCTTTCCTCTAATTT 58.476 33.333 0.00 0.00 33.58 1.82
180 181 7.890655 AGCAAAGTTGGTATCTTTCCTCTAATT 59.109 33.333 0.00 0.00 37.09 1.40
181 182 7.406104 AGCAAAGTTGGTATCTTTCCTCTAAT 58.594 34.615 0.00 0.00 37.09 1.73
182 183 6.779860 AGCAAAGTTGGTATCTTTCCTCTAA 58.220 36.000 0.00 0.00 37.09 2.10
183 184 6.374417 AGCAAAGTTGGTATCTTTCCTCTA 57.626 37.500 0.00 0.00 37.09 2.43
184 185 5.248380 AGCAAAGTTGGTATCTTTCCTCT 57.752 39.130 0.00 0.00 37.09 3.69
185 186 4.093556 CGAGCAAAGTTGGTATCTTTCCTC 59.906 45.833 0.00 0.00 39.30 3.71
186 187 4.003648 CGAGCAAAGTTGGTATCTTTCCT 58.996 43.478 0.00 0.00 39.30 3.36
187 188 3.751698 ACGAGCAAAGTTGGTATCTTTCC 59.248 43.478 0.00 0.00 39.30 3.13
188 189 6.476243 TTACGAGCAAAGTTGGTATCTTTC 57.524 37.500 0.00 0.00 39.30 2.62
189 190 6.485648 AGTTTACGAGCAAAGTTGGTATCTTT 59.514 34.615 0.00 0.00 39.30 2.52
190 191 5.995897 AGTTTACGAGCAAAGTTGGTATCTT 59.004 36.000 0.00 0.00 39.30 2.40
191 192 5.548406 AGTTTACGAGCAAAGTTGGTATCT 58.452 37.500 0.00 0.00 39.30 1.98
192 193 5.857822 AGTTTACGAGCAAAGTTGGTATC 57.142 39.130 0.00 0.00 39.30 2.24
193 194 7.156673 TCTTAGTTTACGAGCAAAGTTGGTAT 58.843 34.615 0.00 0.00 39.30 2.73
194 195 6.514947 TCTTAGTTTACGAGCAAAGTTGGTA 58.485 36.000 0.00 0.00 39.30 3.25
195 196 5.362263 TCTTAGTTTACGAGCAAAGTTGGT 58.638 37.500 0.00 0.00 42.35 3.67
196 197 5.917541 TCTTAGTTTACGAGCAAAGTTGG 57.082 39.130 0.00 0.00 0.00 3.77
197 198 6.851330 CCTTTCTTAGTTTACGAGCAAAGTTG 59.149 38.462 0.00 0.00 0.00 3.16
198 199 6.017357 CCCTTTCTTAGTTTACGAGCAAAGTT 60.017 38.462 0.00 0.00 0.00 2.66
199 200 5.469084 CCCTTTCTTAGTTTACGAGCAAAGT 59.531 40.000 0.00 0.00 0.00 2.66
200 201 5.699458 TCCCTTTCTTAGTTTACGAGCAAAG 59.301 40.000 0.00 0.00 0.00 2.77
201 202 5.613329 TCCCTTTCTTAGTTTACGAGCAAA 58.387 37.500 0.00 0.00 0.00 3.68
202 203 5.217978 TCCCTTTCTTAGTTTACGAGCAA 57.782 39.130 0.00 0.00 0.00 3.91
203 204 4.877378 TCCCTTTCTTAGTTTACGAGCA 57.123 40.909 0.00 0.00 0.00 4.26
204 205 9.194271 CTATAATCCCTTTCTTAGTTTACGAGC 57.806 37.037 0.00 0.00 0.00 5.03
207 208 9.813446 ACACTATAATCCCTTTCTTAGTTTACG 57.187 33.333 0.00 0.00 0.00 3.18
222 223 5.796424 TTACCTTCGGGACACTATAATCC 57.204 43.478 0.00 0.00 38.77 3.01
223 224 6.147328 GCATTTACCTTCGGGACACTATAATC 59.853 42.308 0.00 0.00 38.77 1.75
224 225 5.995897 GCATTTACCTTCGGGACACTATAAT 59.004 40.000 0.00 0.00 38.77 1.28
225 226 5.362263 GCATTTACCTTCGGGACACTATAA 58.638 41.667 0.00 0.00 38.77 0.98
226 227 4.500205 CGCATTTACCTTCGGGACACTATA 60.500 45.833 0.00 0.00 38.77 1.31
227 228 3.740141 CGCATTTACCTTCGGGACACTAT 60.740 47.826 0.00 0.00 38.77 2.12
228 229 2.417651 CGCATTTACCTTCGGGACACTA 60.418 50.000 0.00 0.00 38.77 2.74
229 230 1.674817 CGCATTTACCTTCGGGACACT 60.675 52.381 0.00 0.00 38.77 3.55
230 231 0.725117 CGCATTTACCTTCGGGACAC 59.275 55.000 0.00 0.00 38.77 3.67
231 232 0.391927 CCGCATTTACCTTCGGGACA 60.392 55.000 0.00 0.00 38.35 4.02
232 233 2.390427 CCGCATTTACCTTCGGGAC 58.610 57.895 0.00 0.00 38.35 4.46
233 234 4.946038 CCGCATTTACCTTCGGGA 57.054 55.556 0.00 0.00 38.35 5.14
235 236 1.014352 CTTCCCGCATTTACCTTCGG 58.986 55.000 0.00 0.00 41.41 4.30
236 237 2.018542 TCTTCCCGCATTTACCTTCG 57.981 50.000 0.00 0.00 0.00 3.79
237 238 4.398044 TCATTTCTTCCCGCATTTACCTTC 59.602 41.667 0.00 0.00 0.00 3.46
238 239 4.340617 TCATTTCTTCCCGCATTTACCTT 58.659 39.130 0.00 0.00 0.00 3.50
239 240 3.963129 TCATTTCTTCCCGCATTTACCT 58.037 40.909 0.00 0.00 0.00 3.08
240 241 4.712122 TTCATTTCTTCCCGCATTTACC 57.288 40.909 0.00 0.00 0.00 2.85
241 242 6.156519 AGTTTTCATTTCTTCCCGCATTTAC 58.843 36.000 0.00 0.00 0.00 2.01
242 243 6.208599 AGAGTTTTCATTTCTTCCCGCATTTA 59.791 34.615 0.00 0.00 0.00 1.40
243 244 5.011023 AGAGTTTTCATTTCTTCCCGCATTT 59.989 36.000 0.00 0.00 0.00 2.32
244 245 4.524328 AGAGTTTTCATTTCTTCCCGCATT 59.476 37.500 0.00 0.00 0.00 3.56
245 246 4.082125 AGAGTTTTCATTTCTTCCCGCAT 58.918 39.130 0.00 0.00 0.00 4.73
246 247 3.486383 AGAGTTTTCATTTCTTCCCGCA 58.514 40.909 0.00 0.00 0.00 5.69
247 248 5.622770 TTAGAGTTTTCATTTCTTCCCGC 57.377 39.130 0.00 0.00 0.00 6.13
314 315 7.793948 AAACACTCTAGGGTTGATTAGTAGT 57.206 36.000 0.00 0.00 0.00 2.73
315 316 7.921745 GCTAAACACTCTAGGGTTGATTAGTAG 59.078 40.741 15.35 0.00 0.00 2.57
316 317 7.618512 AGCTAAACACTCTAGGGTTGATTAGTA 59.381 37.037 15.35 0.00 0.00 1.82
326 327 7.923414 AAATACAAAGCTAAACACTCTAGGG 57.077 36.000 0.00 0.00 0.00 3.53
328 329 8.709646 ACGAAAATACAAAGCTAAACACTCTAG 58.290 33.333 0.00 0.00 0.00 2.43
379 381 7.279313 GGGTAAATTCGACTAGCAAATACAGAA 59.721 37.037 0.00 0.00 0.00 3.02
383 385 6.018180 CCAGGGTAAATTCGACTAGCAAATAC 60.018 42.308 0.00 0.00 0.00 1.89
389 391 3.814005 TCCAGGGTAAATTCGACTAGC 57.186 47.619 0.00 0.00 0.00 3.42
390 392 5.914033 TCATTCCAGGGTAAATTCGACTAG 58.086 41.667 0.00 0.00 0.00 2.57
392 394 4.837093 TCATTCCAGGGTAAATTCGACT 57.163 40.909 0.00 0.00 0.00 4.18
399 405 2.159014 CCGTCGATCATTCCAGGGTAAA 60.159 50.000 0.00 0.00 0.00 2.01
407 413 1.595382 CCCTGCCGTCGATCATTCC 60.595 63.158 0.00 0.00 0.00 3.01
408 414 0.034059 ATCCCTGCCGTCGATCATTC 59.966 55.000 0.00 0.00 0.00 2.67
409 415 0.469917 AATCCCTGCCGTCGATCATT 59.530 50.000 0.00 0.00 0.00 2.57
422 428 1.298667 GTGTGGCCGTGTAATCCCT 59.701 57.895 0.00 0.00 0.00 4.20
423 429 1.747745 GGTGTGGCCGTGTAATCCC 60.748 63.158 0.00 0.00 0.00 3.85
425 431 1.199097 CAAAGGTGTGGCCGTGTAATC 59.801 52.381 0.00 0.00 43.70 1.75
432 490 1.582610 AATACGCAAAGGTGTGGCCG 61.583 55.000 0.00 0.00 43.70 6.13
447 505 6.072175 ACGAGAGAGATGCCAGAATAGAATAC 60.072 42.308 0.00 0.00 0.00 1.89
448 506 6.007076 ACGAGAGAGATGCCAGAATAGAATA 58.993 40.000 0.00 0.00 0.00 1.75
449 507 4.832266 ACGAGAGAGATGCCAGAATAGAAT 59.168 41.667 0.00 0.00 0.00 2.40
450 508 4.211125 ACGAGAGAGATGCCAGAATAGAA 58.789 43.478 0.00 0.00 0.00 2.10
451 509 3.826524 ACGAGAGAGATGCCAGAATAGA 58.173 45.455 0.00 0.00 0.00 1.98
463 521 1.595993 CGCAGGGGAAACGAGAGAGA 61.596 60.000 0.00 0.00 0.00 3.10
480 538 4.908877 GTCTACTCCCGAGCGCGC 62.909 72.222 26.66 26.66 35.83 6.86
487 545 4.554363 CTGCCGCGTCTACTCCCG 62.554 72.222 4.92 0.00 0.00 5.14
507 565 7.505923 AGCTTATTTTTAGAAACTCTTGTGGGT 59.494 33.333 0.00 0.00 0.00 4.51
523 581 4.100808 TGTTCTTGTGGGCAGCTTATTTTT 59.899 37.500 0.00 0.00 0.00 1.94
528 586 1.896220 CTGTTCTTGTGGGCAGCTTA 58.104 50.000 0.00 0.00 0.00 3.09
531 589 2.647297 GCTGTTCTTGTGGGCAGC 59.353 61.111 0.00 0.00 45.70 5.25
532 590 1.597854 TCGCTGTTCTTGTGGGCAG 60.598 57.895 0.00 0.00 0.00 4.85
533 591 1.891919 GTCGCTGTTCTTGTGGGCA 60.892 57.895 0.00 0.00 0.00 5.36
534 592 2.617274 GGTCGCTGTTCTTGTGGGC 61.617 63.158 0.00 0.00 0.00 5.36
535 593 0.951040 GAGGTCGCTGTTCTTGTGGG 60.951 60.000 0.00 0.00 0.00 4.61
536 594 0.951040 GGAGGTCGCTGTTCTTGTGG 60.951 60.000 0.00 0.00 0.00 4.17
537 595 0.249868 TGGAGGTCGCTGTTCTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
538 596 0.249911 GTGGAGGTCGCTGTTCTTGT 60.250 55.000 0.00 0.00 0.00 3.16
545 631 2.681778 AGGAGGTGGAGGTCGCTG 60.682 66.667 0.00 0.00 0.00 5.18
552 638 1.608717 CGGAAGGTGAGGAGGTGGAG 61.609 65.000 0.00 0.00 0.00 3.86
556 653 0.252103 TTAGCGGAAGGTGAGGAGGT 60.252 55.000 0.00 0.00 44.53 3.85
577 674 3.851128 GGCAGCTAGGGGACGACC 61.851 72.222 0.00 0.00 39.11 4.79
578 675 3.851128 GGGCAGCTAGGGGACGAC 61.851 72.222 0.00 0.00 0.00 4.34
582 679 3.675918 ATTGGGGGCAGCTAGGGGA 62.676 63.158 0.00 0.00 0.00 4.81
583 680 2.647003 GAATTGGGGGCAGCTAGGGG 62.647 65.000 0.00 0.00 0.00 4.79
584 681 1.152673 GAATTGGGGGCAGCTAGGG 60.153 63.158 0.00 0.00 0.00 3.53
585 682 0.179006 GAGAATTGGGGGCAGCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
586 683 0.179006 GGAGAATTGGGGGCAGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
587 684 0.918799 TGGAGAATTGGGGGCAGCTA 60.919 55.000 0.00 0.00 0.00 3.32
588 685 2.240918 TGGAGAATTGGGGGCAGCT 61.241 57.895 0.00 0.00 0.00 4.24
919 1356 2.042930 AGGGTGGGGGAGGATGTC 59.957 66.667 0.00 0.00 0.00 3.06
947 1388 1.004862 AGGTGTGGATGAGAGAGACGA 59.995 52.381 0.00 0.00 0.00 4.20
949 1390 1.754226 GGAGGTGTGGATGAGAGAGAC 59.246 57.143 0.00 0.00 0.00 3.36
958 1399 1.623834 GGAAGAGGAGGAGGTGTGGAT 60.624 57.143 0.00 0.00 0.00 3.41
962 1403 0.041982 GGAGGAAGAGGAGGAGGTGT 59.958 60.000 0.00 0.00 0.00 4.16
973 1414 2.348888 GGGACGAAGCGGAGGAAGA 61.349 63.158 0.00 0.00 0.00 2.87
975 1416 1.885163 GAAGGGACGAAGCGGAGGAA 61.885 60.000 0.00 0.00 0.00 3.36
976 1417 2.283676 AAGGGACGAAGCGGAGGA 60.284 61.111 0.00 0.00 0.00 3.71
979 1420 2.697761 CGAGAAGGGACGAAGCGGA 61.698 63.158 0.00 0.00 0.00 5.54
980 1421 2.202623 CGAGAAGGGACGAAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
981 1422 1.226435 CTCGAGAAGGGACGAAGCG 60.226 63.158 6.58 0.00 38.05 4.68
982 1423 0.741915 ATCTCGAGAAGGGACGAAGC 59.258 55.000 20.91 0.00 38.05 3.86
983 1424 1.066303 CCATCTCGAGAAGGGACGAAG 59.934 57.143 25.70 1.53 38.05 3.79
984 1425 1.103803 CCATCTCGAGAAGGGACGAA 58.896 55.000 25.70 0.00 38.05 3.85
985 1426 0.255033 TCCATCTCGAGAAGGGACGA 59.745 55.000 30.71 13.29 33.94 4.20
986 1427 0.382515 GTCCATCTCGAGAAGGGACG 59.617 60.000 34.77 16.03 40.36 4.79
987 1428 0.747852 GGTCCATCTCGAGAAGGGAC 59.252 60.000 37.38 37.38 44.79 4.46
993 1434 2.833582 GCGGGGTCCATCTCGAGA 60.834 66.667 19.19 19.19 0.00 4.04
1087 1528 1.555075 TCGAGGAGGAGGATTTGTTGG 59.445 52.381 0.00 0.00 0.00 3.77
1113 1554 6.693315 AATCTCAAGAAAGTCGAACCAAAA 57.307 33.333 0.00 0.00 0.00 2.44
1124 1565 8.040132 AGACAGAACTGGATAATCTCAAGAAAG 58.960 37.037 6.76 0.00 34.19 2.62
1246 1695 2.092592 TGCCAGCATGAGACAATCAGAT 60.093 45.455 0.00 0.00 42.53 2.90
1259 1708 0.877071 CAAGAGTTCGTTGCCAGCAT 59.123 50.000 0.00 0.00 0.00 3.79
1464 1913 2.046292 AGGATTCTCCCTCTTGCTAGC 58.954 52.381 8.10 8.10 37.19 3.42
1547 2004 3.650139 GGCATGCATGATCCAATTTCTC 58.350 45.455 30.64 7.39 0.00 2.87
1568 2025 2.762472 CGTCTTTAGCAAAGCATGTCG 58.238 47.619 0.00 0.00 38.39 4.35
1577 2036 1.669760 CCGTGGGCGTCTTTAGCAA 60.670 57.895 0.00 0.00 36.15 3.91
1689 2164 5.781210 AAGCAGGAAGGAAAGAAAAGAAG 57.219 39.130 0.00 0.00 0.00 2.85
1734 2210 6.490721 ACGAATAAGTTGTCCTAGCTAGCTAT 59.509 38.462 24.36 9.90 0.00 2.97
1748 2224 8.948853 TTGCAAGATTCTTAACGAATAAGTTG 57.051 30.769 0.00 9.40 42.31 3.16
1850 2352 6.223120 GTTGCTGGTCCAATTTTTATCAAGT 58.777 36.000 0.00 0.00 0.00 3.16
2028 2621 2.224670 TGCCCTATTCACGGTTCTTGTT 60.225 45.455 0.00 0.00 0.00 2.83
2043 2636 4.846367 AGCCATAGATGACTTTATGCCCTA 59.154 41.667 0.00 0.00 0.00 3.53
2079 2673 4.272504 GCCTGCTTAATTATGTACGCAGAA 59.727 41.667 14.30 0.00 44.83 3.02
2103 2697 3.441101 AGCACTTCCATGGTAGTGTAGA 58.559 45.455 37.08 7.33 42.78 2.59
2108 2702 5.455326 GGATTGATAGCACTTCCATGGTAGT 60.455 44.000 17.66 17.66 36.09 2.73
2151 2753 2.192175 GAATACAGGCCCACCCGG 59.808 66.667 0.00 0.00 39.21 5.73
2152 2754 1.994885 ATGGAATACAGGCCCACCCG 61.995 60.000 0.00 0.00 39.21 5.28
2153 2755 0.261696 AATGGAATACAGGCCCACCC 59.738 55.000 0.00 0.00 36.11 4.61
2165 2767 3.885297 CGGCCAGTTATCAAGAATGGAAT 59.115 43.478 2.24 0.00 32.55 3.01
2222 2847 6.073765 CCGAATAAAGACTTGATTATGACCCG 60.074 42.308 0.00 0.00 0.00 5.28
2266 2891 1.503818 GCAAGGTTCTTCCGTCGCAA 61.504 55.000 0.00 0.00 41.99 4.85
2267 2892 1.959226 GCAAGGTTCTTCCGTCGCA 60.959 57.895 0.00 0.00 41.99 5.10
2293 4326 2.243810 TCATAAAAGGCGGGCAAAGTT 58.756 42.857 3.78 0.00 0.00 2.66
2294 4327 1.917872 TCATAAAAGGCGGGCAAAGT 58.082 45.000 3.78 0.00 0.00 2.66
2302 4335 2.823196 TTGCGACATCATAAAAGGCG 57.177 45.000 0.00 0.00 0.00 5.52
2349 4423 0.806241 GCTTTTTATTCGGTCCGGCA 59.194 50.000 12.29 0.00 0.00 5.69
2369 4443 2.198827 TTGACATTCTGTGCCGGATT 57.801 45.000 5.05 0.00 0.00 3.01
2370 4444 2.198827 TTTGACATTCTGTGCCGGAT 57.801 45.000 5.05 0.00 0.00 4.18
2508 4731 3.499918 ACAGTTGTTGCAGATAAGCAGAC 59.500 43.478 0.00 0.00 46.54 3.51
2523 4746 7.750229 ACATATGAGAACATTTCACAGTTGT 57.250 32.000 10.38 0.00 37.87 3.32
2632 4856 3.005684 ACCATGTACTGCACAACCAAATG 59.994 43.478 0.00 0.00 41.55 2.32
3177 6313 6.508563 CGAACGGTTCAGAAACATATCATCTG 60.509 42.308 19.91 0.00 41.49 2.90
3205 6424 0.245539 CGGCCTCCTACAGAAACGAA 59.754 55.000 0.00 0.00 0.00 3.85
3235 6454 0.540923 AGGTGCTCAGATTCTGGAGC 59.459 55.000 21.38 21.38 36.20 4.70
3344 6577 3.308866 GTGGCGAGATTAATTTACAGCGT 59.691 43.478 0.00 0.00 0.00 5.07
3380 6614 8.706322 ATATGTACCATGTATGTGTCTGTAGA 57.294 34.615 0.00 0.00 0.00 2.59
3430 6669 2.158784 TGGCATTCACATCGATGGATCA 60.159 45.455 28.09 13.32 0.00 2.92
3719 6971 1.196808 CGGTCATTTGTTCGTCCAAGG 59.803 52.381 0.00 0.00 0.00 3.61
3747 7000 1.806247 CGCAGATCGCAAAGGTCCATA 60.806 52.381 9.58 0.00 42.60 2.74
3801 7061 4.152402 GTCACTACAGCCATGTACTGTTTG 59.848 45.833 20.02 17.06 46.01 2.93
3820 7090 5.134661 AGCTTAGGTCTCATAGGTAGTCAC 58.865 45.833 0.00 0.00 0.00 3.67
3935 7212 9.362151 TGTGTTCATCTAAGAAAATTTAGGGTT 57.638 29.630 0.00 0.00 32.66 4.11
3936 7213 8.934023 TGTGTTCATCTAAGAAAATTTAGGGT 57.066 30.769 0.00 0.00 32.66 4.34
4005 7286 5.047660 TGGGTATAGTGGTGTTTGCAATTTC 60.048 40.000 0.00 0.00 0.00 2.17
4053 7334 6.466308 TTTCAGTGTCAATGTCAATAGTCG 57.534 37.500 0.00 0.00 0.00 4.18
4066 7347 3.559655 CCGACTGTCATTTTTCAGTGTCA 59.440 43.478 8.73 0.00 43.64 3.58
4071 7352 5.362556 AATCACCGACTGTCATTTTTCAG 57.637 39.130 8.73 0.00 37.65 3.02
4126 7407 4.526650 AGAAACGCCATCCCTTTGTAAAAT 59.473 37.500 0.00 0.00 0.00 1.82
4143 7424 4.809426 ACCGATGAAATTAGCCTAGAAACG 59.191 41.667 0.00 0.00 0.00 3.60
4146 7427 4.127171 GCACCGATGAAATTAGCCTAGAA 58.873 43.478 0.00 0.00 0.00 2.10
4161 7442 1.003355 CCACTTGTGAGGCACCGAT 60.003 57.895 1.89 0.00 32.73 4.18
4176 7457 2.428171 TGCCGTAGAACTACCATACCAC 59.572 50.000 6.43 0.00 32.61 4.16
4184 7465 7.198390 TGACTACATAAATGCCGTAGAACTAC 58.802 38.462 0.00 2.29 36.84 2.73
4196 7477 6.205464 GGTGACATCCCATGACTACATAAATG 59.795 42.308 0.00 0.00 35.09 2.32
4226 7507 2.760385 CCCTGAGACCCCTCGGAC 60.760 72.222 3.03 0.00 46.42 4.79
4227 7508 4.075793 CCCCTGAGACCCCTCGGA 62.076 72.222 3.03 0.00 46.42 4.55
4229 7510 4.400251 ACCCCCTGAGACCCCTCG 62.400 72.222 0.00 0.00 42.33 4.63
4230 7511 2.689034 CACCCCCTGAGACCCCTC 60.689 72.222 0.00 0.00 39.86 4.30
4231 7512 2.654599 AAACACCCCCTGAGACCCCT 62.655 60.000 0.00 0.00 0.00 4.79
4232 7513 2.160853 AAACACCCCCTGAGACCCC 61.161 63.158 0.00 0.00 0.00 4.95
4233 7514 1.074951 CAAACACCCCCTGAGACCC 59.925 63.158 0.00 0.00 0.00 4.46
4234 7515 0.185175 AACAAACACCCCCTGAGACC 59.815 55.000 0.00 0.00 0.00 3.85
4235 7516 2.067365 AAACAAACACCCCCTGAGAC 57.933 50.000 0.00 0.00 0.00 3.36
4236 7517 2.024846 TGAAAACAAACACCCCCTGAGA 60.025 45.455 0.00 0.00 0.00 3.27
4237 7518 2.383855 TGAAAACAAACACCCCCTGAG 58.616 47.619 0.00 0.00 0.00 3.35
4238 7519 2.534042 TGAAAACAAACACCCCCTGA 57.466 45.000 0.00 0.00 0.00 3.86
4239 7520 2.224257 CCATGAAAACAAACACCCCCTG 60.224 50.000 0.00 0.00 0.00 4.45
4240 7521 2.046292 CCATGAAAACAAACACCCCCT 58.954 47.619 0.00 0.00 0.00 4.79
4241 7522 2.043227 TCCATGAAAACAAACACCCCC 58.957 47.619 0.00 0.00 0.00 5.40
4242 7523 2.698274 AGTCCATGAAAACAAACACCCC 59.302 45.455 0.00 0.00 0.00 4.95
4243 7524 4.400529 AAGTCCATGAAAACAAACACCC 57.599 40.909 0.00 0.00 0.00 4.61
4244 7525 6.735678 AAAAAGTCCATGAAAACAAACACC 57.264 33.333 0.00 0.00 0.00 4.16
4264 7545 8.050930 AGACTTTTTCTAGTCCCTACACAAAAA 58.949 33.333 0.00 0.00 44.50 1.94
4265 7546 7.571025 AGACTTTTTCTAGTCCCTACACAAAA 58.429 34.615 0.00 0.00 44.50 2.44
4266 7547 7.133133 AGACTTTTTCTAGTCCCTACACAAA 57.867 36.000 0.00 0.00 44.50 2.83
4267 7548 6.742559 AGACTTTTTCTAGTCCCTACACAA 57.257 37.500 0.00 0.00 44.50 3.33
4268 7549 6.742559 AAGACTTTTTCTAGTCCCTACACA 57.257 37.500 0.00 0.00 44.50 3.72
4269 7550 7.443477 AGAAAGACTTTTTCTAGTCCCTACAC 58.557 38.462 1.12 0.00 44.50 2.90
4270 7551 7.613551 AGAAAGACTTTTTCTAGTCCCTACA 57.386 36.000 1.12 0.00 44.50 2.74
4271 7552 9.642327 CTAAGAAAGACTTTTTCTAGTCCCTAC 57.358 37.037 1.12 0.00 44.50 3.18
4272 7553 9.597681 TCTAAGAAAGACTTTTTCTAGTCCCTA 57.402 33.333 1.12 0.00 44.50 3.53
4273 7554 8.493787 TCTAAGAAAGACTTTTTCTAGTCCCT 57.506 34.615 1.12 0.00 44.50 4.20
4274 7555 8.586744 TCTCTAAGAAAGACTTTTTCTAGTCCC 58.413 37.037 1.12 0.00 44.50 4.46
4275 7556 9.414295 GTCTCTAAGAAAGACTTTTTCTAGTCC 57.586 37.037 1.12 0.00 44.50 3.85
4303 7584 4.376225 AGTCCCTCCCGTTTGATAAAAA 57.624 40.909 0.00 0.00 0.00 1.94
4304 7585 4.376225 AAGTCCCTCCCGTTTGATAAAA 57.624 40.909 0.00 0.00 0.00 1.52
4305 7586 4.376225 AAAGTCCCTCCCGTTTGATAAA 57.624 40.909 0.00 0.00 0.00 1.40
4306 7587 4.376225 AAAAGTCCCTCCCGTTTGATAA 57.624 40.909 0.00 0.00 0.00 1.75
4307 7588 4.376225 AAAAAGTCCCTCCCGTTTGATA 57.624 40.909 0.00 0.00 0.00 2.15
4308 7589 2.971901 AAAAGTCCCTCCCGTTTGAT 57.028 45.000 0.00 0.00 0.00 2.57
4309 7590 2.740506 AAAAAGTCCCTCCCGTTTGA 57.259 45.000 0.00 0.00 0.00 2.69
4310 7591 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
4311 7592 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
4312 7593 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
4313 7594 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
4314 7595 1.065636 GTCCCTAAAAAGTCCCTCCCG 60.066 57.143 0.00 0.00 0.00 5.14
4315 7596 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
4316 7597 5.013913 AGTTTAGTCCCTAAAAAGTCCCTCC 59.986 44.000 0.00 0.00 37.62 4.30
4317 7598 6.124316 AGTTTAGTCCCTAAAAAGTCCCTC 57.876 41.667 0.00 0.00 37.62 4.30
4318 7599 6.215023 CCTAGTTTAGTCCCTAAAAAGTCCCT 59.785 42.308 0.00 0.00 37.62 4.20
4319 7600 6.413052 CCTAGTTTAGTCCCTAAAAAGTCCC 58.587 44.000 0.00 0.00 37.62 4.46
4320 7601 5.879223 GCCTAGTTTAGTCCCTAAAAAGTCC 59.121 44.000 0.00 0.00 37.62 3.85
4321 7602 6.470278 TGCCTAGTTTAGTCCCTAAAAAGTC 58.530 40.000 0.00 0.00 37.62 3.01
4322 7603 6.443995 TGCCTAGTTTAGTCCCTAAAAAGT 57.556 37.500 0.00 0.00 37.62 2.66
4323 7604 7.939784 AATGCCTAGTTTAGTCCCTAAAAAG 57.060 36.000 0.00 0.88 37.62 2.27
4324 7605 7.177744 CCAAATGCCTAGTTTAGTCCCTAAAAA 59.822 37.037 0.00 0.00 37.62 1.94
4325 7606 6.661805 CCAAATGCCTAGTTTAGTCCCTAAAA 59.338 38.462 0.00 0.00 37.62 1.52
4326 7607 6.184789 CCAAATGCCTAGTTTAGTCCCTAAA 58.815 40.000 0.00 0.00 34.12 1.85
4327 7608 5.339695 CCCAAATGCCTAGTTTAGTCCCTAA 60.340 44.000 0.00 0.00 0.00 2.69
4328 7609 4.165372 CCCAAATGCCTAGTTTAGTCCCTA 59.835 45.833 0.00 0.00 0.00 3.53
4329 7610 3.053619 CCCAAATGCCTAGTTTAGTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
4330 7611 3.053917 TCCCAAATGCCTAGTTTAGTCCC 60.054 47.826 0.00 0.00 0.00 4.46
4331 7612 4.230745 TCCCAAATGCCTAGTTTAGTCC 57.769 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.