Multiple sequence alignment - TraesCS7B01G354200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G354200 chr7B 100.000 1526 0 0 1 1526 612257461 612255936 0.000000e+00 2819.0
1 TraesCS7B01G354200 chr7B 100.000 1300 0 0 1861 3160 612255601 612254302 0.000000e+00 2401.0
2 TraesCS7B01G354200 chr7B 89.341 516 20 10 2209 2701 612006096 612005593 1.610000e-172 616.0
3 TraesCS7B01G354200 chr7B 96.951 328 10 0 1888 2215 612006469 612006142 4.610000e-153 551.0
4 TraesCS7B01G354200 chr7B 86.104 403 35 9 24 422 611743423 611743038 6.310000e-112 414.0
5 TraesCS7B01G354200 chr7B 92.547 161 12 0 3000 3160 612005463 612005303 6.820000e-57 231.0
6 TraesCS7B01G354200 chr7B 80.751 213 21 6 2222 2419 611741283 611741076 7.060000e-32 148.0
7 TraesCS7B01G354200 chr7B 82.840 169 13 7 2232 2386 611961584 611961418 1.530000e-28 137.0
8 TraesCS7B01G354200 chr7B 94.203 69 4 0 2900 2968 612005526 612005458 4.310000e-19 106.0
9 TraesCS7B01G354200 chr7B 91.304 46 2 2 922 967 611962759 611962716 9.460000e-06 62.1
10 TraesCS7B01G354200 chr7B 91.304 46 2 2 922 967 612007211 612007168 9.460000e-06 62.1
11 TraesCS7B01G354200 chr7D 82.779 1504 122 69 1 1428 562423859 562425301 0.000000e+00 1216.0
12 TraesCS7B01G354200 chr7D 92.460 557 41 1 971 1526 562149217 562148661 0.000000e+00 795.0
13 TraesCS7B01G354200 chr7D 91.985 524 42 0 1001 1524 562148958 562148435 0.000000e+00 736.0
14 TraesCS7B01G354200 chr7D 90.614 554 51 1 968 1520 562401515 562402068 0.000000e+00 734.0
15 TraesCS7B01G354200 chr7D 97.097 310 6 2 1900 2209 562425698 562426004 1.300000e-143 520.0
16 TraesCS7B01G354200 chr7D 92.571 350 21 3 1861 2210 562148568 562148224 6.090000e-137 497.0
17 TraesCS7B01G354200 chr7D 91.691 349 26 2 1861 2209 562403054 562403399 6.130000e-132 481.0
18 TraesCS7B01G354200 chr7D 91.429 350 27 2 1861 2210 562389837 562390183 7.930000e-131 477.0
19 TraesCS7B01G354200 chr7D 90.778 347 27 4 1861 2207 562257087 562256746 2.870000e-125 459.0
20 TraesCS7B01G354200 chr7D 84.956 226 13 8 2209 2419 562426059 562426278 3.190000e-50 209.0
21 TraesCS7B01G354200 chr7D 86.709 158 19 1 256 411 562388371 562388528 1.170000e-39 174.0
22 TraesCS7B01G354200 chr7D 88.811 143 12 3 108 250 562400618 562400756 4.190000e-39 172.0
23 TraesCS7B01G354200 chr7D 91.000 100 9 0 69 168 562150112 562150013 5.500000e-28 135.0
24 TraesCS7B01G354200 chr7D 83.212 137 17 4 2213 2348 562403455 562403586 1.540000e-23 121.0
25 TraesCS7B01G354200 chr7D 77.941 136 24 6 3028 3160 562255592 562255460 2.610000e-11 80.5
26 TraesCS7B01G354200 chr7D 90.909 44 4 0 1 44 562150157 562150114 3.400000e-05 60.2
27 TraesCS7B01G354200 chr7D 91.111 45 2 2 924 967 562424862 562424905 3.400000e-05 60.2
28 TraesCS7B01G354200 chr7A 92.607 514 38 0 1013 1526 647307227 647306714 0.000000e+00 739.0
29 TraesCS7B01G354200 chr7A 91.985 524 42 0 1001 1524 647307011 647306488 0.000000e+00 736.0
30 TraesCS7B01G354200 chr7A 88.548 620 53 9 907 1524 647862937 647862334 0.000000e+00 736.0
31 TraesCS7B01G354200 chr7A 90.424 543 51 1 985 1526 647917467 647916925 0.000000e+00 713.0
32 TraesCS7B01G354200 chr7A 95.751 353 12 2 1861 2213 647934127 647933778 1.650000e-157 566.0
33 TraesCS7B01G354200 chr7A 85.949 548 41 18 1861 2375 648041771 648041227 1.280000e-153 553.0
34 TraesCS7B01G354200 chr7A 90.230 348 31 2 1861 2207 647315445 647315100 4.810000e-123 451.0
35 TraesCS7B01G354200 chr7A 78.997 319 30 22 19 332 647935693 647935407 1.940000e-42 183.0
36 TraesCS7B01G354200 chr7A 82.743 226 18 7 2209 2419 647933732 647933513 6.960000e-42 182.0
37 TraesCS7B01G354200 chr7A 75.735 408 58 23 1 407 647308939 647308572 1.950000e-37 167.0
38 TraesCS7B01G354200 chr7A 92.537 67 3 1 428 494 647863252 647863188 9.330000e-16 95.3
39 TraesCS7B01G354200 chrUn 91.296 540 47 0 987 1526 20705490 20706029 0.000000e+00 737.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G354200 chr7B 612254302 612257461 3159 True 2610.000000 2819 100.000000 1 3160 2 chr7B.!!$R4 3159
1 TraesCS7B01G354200 chr7B 612005303 612007211 1908 True 313.220000 616 92.869200 922 3160 5 chr7B.!!$R3 2238
2 TraesCS7B01G354200 chr7B 611741076 611743423 2347 True 281.000000 414 83.427500 24 2419 2 chr7B.!!$R1 2395
3 TraesCS7B01G354200 chr7D 562423859 562426278 2419 False 501.300000 1216 88.985750 1 2419 4 chr7D.!!$F3 2418
4 TraesCS7B01G354200 chr7D 562148224 562150157 1933 True 444.640000 795 91.785000 1 2210 5 chr7D.!!$R1 2209
5 TraesCS7B01G354200 chr7D 562400618 562403586 2968 False 377.000000 734 88.582000 108 2348 4 chr7D.!!$F2 2240
6 TraesCS7B01G354200 chr7D 562388371 562390183 1812 False 325.500000 477 89.069000 256 2210 2 chr7D.!!$F1 1954
7 TraesCS7B01G354200 chr7D 562255460 562257087 1627 True 269.750000 459 84.359500 1861 3160 2 chr7D.!!$R2 1299
8 TraesCS7B01G354200 chr7A 647916925 647917467 542 True 713.000000 713 90.424000 985 1526 1 chr7A.!!$R2 541
9 TraesCS7B01G354200 chr7A 648041227 648041771 544 True 553.000000 553 85.949000 1861 2375 1 chr7A.!!$R3 514
10 TraesCS7B01G354200 chr7A 647306488 647308939 2451 True 547.333333 739 86.775667 1 1526 3 chr7A.!!$R4 1525
11 TraesCS7B01G354200 chr7A 647862334 647863252 918 True 415.650000 736 90.542500 428 1524 2 chr7A.!!$R5 1096
12 TraesCS7B01G354200 chr7A 647933513 647935693 2180 True 310.333333 566 85.830333 19 2419 3 chr7A.!!$R6 2400
13 TraesCS7B01G354200 chrUn 20705490 20706029 539 False 737.000000 737 91.296000 987 1526 1 chrUn.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 156 0.036306 TTTCTTCCCCACCTTCTCGC 59.964 55.0 0.0 0.0 0.00 5.03 F
1443 2773 0.036577 CTCTCCACTTGGTGCTCAGG 60.037 60.0 0.0 0.0 36.34 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 2808 0.036732 GGTGATGGTCTTGCCTGTGA 59.963 55.0 0.0 0.0 38.35 3.58 R
2813 7131 0.039798 CTGCAGCACCACATGTTCAC 60.040 55.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 86 0.871722 ATCTCTCCGATCGAAGCGAG 59.128 55.000 18.66 14.36 39.91 5.03
143 147 0.914417 AGCCTCCGATTTCTTCCCCA 60.914 55.000 0.00 0.00 0.00 4.96
152 156 0.036306 TTTCTTCCCCACCTTCTCGC 59.964 55.000 0.00 0.00 0.00 5.03
233 243 2.237893 GGTTCCCCTCGATTCCTGTTAA 59.762 50.000 0.00 0.00 0.00 2.01
288 304 4.494035 GCGCTATTGTTGTTGATCGATTGA 60.494 41.667 0.00 0.00 0.00 2.57
298 314 3.230743 TGATCGATTGAAGCTCGTTCA 57.769 42.857 0.00 2.90 43.82 3.18
308 324 3.190744 TGAAGCTCGTTCAGTTAGTCGAT 59.809 43.478 0.00 0.00 40.45 3.59
328 345 4.747108 CGATGTTGATTAGGCTCGATTCTT 59.253 41.667 0.00 0.00 0.00 2.52
370 423 5.163416 TGCCATGATTTTCGAGTAGATCTGA 60.163 40.000 5.18 0.00 0.00 3.27
407 460 1.726853 CTGTTGGGTCGGTTCATCTC 58.273 55.000 0.00 0.00 0.00 2.75
481 577 1.765314 ACCTACATGCCTGATCTGTCC 59.235 52.381 0.00 0.00 0.00 4.02
523 619 2.290641 GTGGTGTTATTGGGATGCGATC 59.709 50.000 0.00 0.00 0.00 3.69
535 632 2.473816 GATGCGATCCTGTTGATTCGA 58.526 47.619 0.00 0.00 32.41 3.71
538 635 4.053469 TGCGATCCTGTTGATTCGATTA 57.947 40.909 0.00 0.00 32.41 1.75
545 642 8.590470 CGATCCTGTTGATTCGATTATTCTATG 58.410 37.037 0.00 0.00 32.41 2.23
580 690 5.475273 TGCTAATTTCTGATTCTGAAGCG 57.525 39.130 0.82 0.00 0.00 4.68
585 705 2.462456 TCTGATTCTGAAGCGCTGTT 57.538 45.000 12.58 0.00 0.00 3.16
610 730 3.877508 GGGATACACCTGTGATTTGCTAC 59.122 47.826 3.94 0.00 38.98 3.58
612 732 1.808411 ACACCTGTGATTTGCTACCG 58.192 50.000 3.94 0.00 0.00 4.02
623 770 2.667473 TTGCTACCGGCTTTCTAGTC 57.333 50.000 0.00 0.00 42.39 2.59
629 776 2.373938 CGGCTTTCTAGTCGCTTGG 58.626 57.895 0.00 0.00 43.25 3.61
635 782 4.037684 GGCTTTCTAGTCGCTTGGAGTATA 59.962 45.833 0.00 0.00 30.29 1.47
637 784 5.221087 GCTTTCTAGTCGCTTGGAGTATACT 60.221 44.000 4.68 4.68 30.29 2.12
644 792 5.418209 AGTCGCTTGGAGTATACTTAGTTGT 59.582 40.000 6.88 0.00 0.00 3.32
662 1359 5.766222 AGTTGTGCATCAATTCAACTCTTC 58.234 37.500 11.22 0.00 44.36 2.87
664 1361 5.366829 TGTGCATCAATTCAACTCTTCAG 57.633 39.130 0.00 0.00 0.00 3.02
693 1399 4.092383 GTCGGTTTGCGATATTACTGTTGT 59.908 41.667 0.00 0.00 0.00 3.32
699 1405 6.811253 TTGCGATATTACTGTTGTTTCCTT 57.189 33.333 0.00 0.00 0.00 3.36
708 1417 8.974060 ATTACTGTTGTTTCCTTGACTTCTTA 57.026 30.769 0.00 0.00 0.00 2.10
713 1422 6.127842 TGTTGTTTCCTTGACTTCTTAACCAC 60.128 38.462 0.00 0.00 0.00 4.16
720 1429 4.252971 TGACTTCTTAACCACCTTCTCG 57.747 45.455 0.00 0.00 0.00 4.04
729 1438 2.044758 ACCACCTTCTCGGTACAACTT 58.955 47.619 0.00 0.00 46.94 2.66
738 1447 6.471519 CCTTCTCGGTACAACTTTAGATTACG 59.528 42.308 0.00 0.00 0.00 3.18
835 1931 5.252969 TGCTATGTCAATTCATTGGCTTC 57.747 39.130 5.75 0.00 42.60 3.86
838 1934 5.747197 GCTATGTCAATTCATTGGCTTCTTG 59.253 40.000 5.75 0.00 42.60 3.02
841 1937 6.012658 TGTCAATTCATTGGCTTCTTGTAC 57.987 37.500 5.75 0.00 42.60 2.90
842 1938 5.769662 TGTCAATTCATTGGCTTCTTGTACT 59.230 36.000 5.75 0.00 42.60 2.73
932 2044 6.375174 CCATCTGGTTCATCTATTGTTTGACA 59.625 38.462 0.00 0.00 0.00 3.58
943 2055 7.776933 TCTATTGTTTGACATACTGCAGATC 57.223 36.000 23.35 12.38 0.00 2.75
945 2057 8.043113 TCTATTGTTTGACATACTGCAGATCTT 58.957 33.333 23.35 0.00 0.00 2.40
947 2059 4.627035 TGTTTGACATACTGCAGATCTTCG 59.373 41.667 23.35 4.80 0.00 3.79
950 2062 3.443681 TGACATACTGCAGATCTTCGTGA 59.556 43.478 23.35 0.00 0.00 4.35
952 2064 4.428209 ACATACTGCAGATCTTCGTGAAG 58.572 43.478 23.35 3.17 39.71 3.02
962 2074 1.542915 TCTTCGTGAAGACCCTTACCG 59.457 52.381 8.19 0.00 42.06 4.02
963 2075 0.604578 TTCGTGAAGACCCTTACCGG 59.395 55.000 0.00 0.00 0.00 5.28
1089 2419 4.574892 TCGACAATGTCAAGGCAAAGATA 58.425 39.130 14.24 0.00 32.09 1.98
1260 2590 0.397941 TCAAGACCCTCACTGGCAAG 59.602 55.000 0.00 0.00 0.00 4.01
1272 2602 1.379916 TGGCAAGACCATCACCCTG 59.620 57.895 0.00 0.00 46.36 4.45
1299 2629 0.608640 AGTCCTCGGACACCATTGAC 59.391 55.000 17.68 0.00 46.76 3.18
1365 2695 1.023513 AGCAGCGTCTCATCTTTGCC 61.024 55.000 0.00 0.00 32.21 4.52
1377 2707 3.216944 CTTTGCCGGCAAGCAGCTT 62.217 57.895 37.88 0.21 45.13 3.74
1428 2758 2.223803 TCCAGAAGGAGTCCACTCTC 57.776 55.000 12.86 2.26 42.48 3.20
1436 2766 1.343069 GAGTCCACTCTCCACTTGGT 58.657 55.000 0.00 0.00 39.81 3.67
1437 2767 1.001406 GAGTCCACTCTCCACTTGGTG 59.999 57.143 0.00 0.00 39.81 4.17
1438 2768 0.603975 GTCCACTCTCCACTTGGTGC 60.604 60.000 0.00 0.00 36.34 5.01
1439 2769 0.764369 TCCACTCTCCACTTGGTGCT 60.764 55.000 0.00 0.00 36.34 4.40
1440 2770 0.321122 CCACTCTCCACTTGGTGCTC 60.321 60.000 0.00 0.00 36.34 4.26
1441 2771 0.394192 CACTCTCCACTTGGTGCTCA 59.606 55.000 0.00 0.00 36.34 4.26
1442 2772 0.683973 ACTCTCCACTTGGTGCTCAG 59.316 55.000 0.00 0.00 36.34 3.35
1443 2773 0.036577 CTCTCCACTTGGTGCTCAGG 60.037 60.000 0.00 0.00 36.34 3.86
1444 2774 1.673665 CTCCACTTGGTGCTCAGGC 60.674 63.158 0.00 0.00 36.34 4.85
1445 2775 2.121992 CTCCACTTGGTGCTCAGGCT 62.122 60.000 0.00 0.00 39.59 4.58
1446 2776 1.673665 CCACTTGGTGCTCAGGCTC 60.674 63.158 0.00 0.00 39.59 4.70
1451 2781 4.767255 GGTGCTCAGGCTCCGTGG 62.767 72.222 0.00 0.00 41.35 4.94
1452 2782 4.008933 GTGCTCAGGCTCCGTGGT 62.009 66.667 0.00 0.00 39.59 4.16
1453 2783 4.007644 TGCTCAGGCTCCGTGGTG 62.008 66.667 0.00 0.00 39.59 4.17
1454 2784 4.767255 GCTCAGGCTCCGTGGTGG 62.767 72.222 0.00 0.00 40.09 4.61
1455 2785 3.314331 CTCAGGCTCCGTGGTGGT 61.314 66.667 0.00 0.00 39.52 4.16
1456 2786 1.982395 CTCAGGCTCCGTGGTGGTA 60.982 63.158 0.00 0.00 39.52 3.25
1457 2787 1.305802 TCAGGCTCCGTGGTGGTAT 60.306 57.895 0.00 0.00 39.52 2.73
1458 2788 1.153369 CAGGCTCCGTGGTGGTATG 60.153 63.158 0.00 0.00 39.52 2.39
1459 2789 2.513897 GGCTCCGTGGTGGTATGC 60.514 66.667 0.00 0.00 39.52 3.14
1460 2790 2.267642 GCTCCGTGGTGGTATGCA 59.732 61.111 0.00 0.00 39.52 3.96
1461 2791 1.815421 GCTCCGTGGTGGTATGCAG 60.815 63.158 0.00 0.00 39.52 4.41
1462 2792 1.897423 CTCCGTGGTGGTATGCAGA 59.103 57.895 0.00 0.00 39.52 4.26
1463 2793 0.465705 CTCCGTGGTGGTATGCAGAT 59.534 55.000 0.00 0.00 39.52 2.90
1464 2794 0.464036 TCCGTGGTGGTATGCAGATC 59.536 55.000 0.00 0.00 39.52 2.75
1465 2795 0.465705 CCGTGGTGGTATGCAGATCT 59.534 55.000 0.00 0.00 0.00 2.75
1466 2796 1.134401 CCGTGGTGGTATGCAGATCTT 60.134 52.381 0.00 0.00 0.00 2.40
1467 2797 2.205074 CGTGGTGGTATGCAGATCTTC 58.795 52.381 0.00 0.00 0.00 2.87
1468 2798 2.205074 GTGGTGGTATGCAGATCTTCG 58.795 52.381 0.00 0.00 0.00 3.79
1469 2799 1.831106 TGGTGGTATGCAGATCTTCGT 59.169 47.619 0.00 0.00 0.00 3.85
1470 2800 2.159099 TGGTGGTATGCAGATCTTCGTC 60.159 50.000 0.00 0.00 0.00 4.20
1471 2801 2.159099 GGTGGTATGCAGATCTTCGTCA 60.159 50.000 0.00 0.00 0.00 4.35
1472 2802 3.521560 GTGGTATGCAGATCTTCGTCAA 58.478 45.455 0.00 0.00 0.00 3.18
1473 2803 3.553511 GTGGTATGCAGATCTTCGTCAAG 59.446 47.826 0.00 0.00 0.00 3.02
1474 2804 3.447229 TGGTATGCAGATCTTCGTCAAGA 59.553 43.478 0.00 0.00 43.06 3.02
1475 2805 3.799420 GGTATGCAGATCTTCGTCAAGAC 59.201 47.826 0.00 0.00 41.64 3.01
1476 2806 2.370281 TGCAGATCTTCGTCAAGACC 57.630 50.000 0.00 0.00 41.64 3.85
1477 2807 1.066858 TGCAGATCTTCGTCAAGACCC 60.067 52.381 0.00 0.00 41.64 4.46
1478 2808 1.205893 GCAGATCTTCGTCAAGACCCT 59.794 52.381 0.00 0.00 41.64 4.34
1479 2809 2.737039 GCAGATCTTCGTCAAGACCCTC 60.737 54.545 0.00 0.00 41.64 4.30
1480 2810 2.493675 CAGATCTTCGTCAAGACCCTCA 59.506 50.000 0.00 0.00 41.64 3.86
1481 2811 2.494073 AGATCTTCGTCAAGACCCTCAC 59.506 50.000 0.00 0.00 41.64 3.51
1482 2812 1.699730 TCTTCGTCAAGACCCTCACA 58.300 50.000 0.00 0.00 33.38 3.58
1483 2813 1.613925 TCTTCGTCAAGACCCTCACAG 59.386 52.381 0.00 0.00 33.38 3.66
1484 2814 0.679505 TTCGTCAAGACCCTCACAGG 59.320 55.000 0.00 0.00 34.30 4.00
1485 2815 1.374758 CGTCAAGACCCTCACAGGC 60.375 63.158 0.00 0.00 32.73 4.85
1486 2816 1.754745 GTCAAGACCCTCACAGGCA 59.245 57.895 0.00 0.00 32.73 4.75
1487 2817 0.108585 GTCAAGACCCTCACAGGCAA 59.891 55.000 0.00 0.00 32.73 4.52
1488 2818 0.397941 TCAAGACCCTCACAGGCAAG 59.602 55.000 0.00 0.00 32.73 4.01
1489 2819 0.397941 CAAGACCCTCACAGGCAAGA 59.602 55.000 0.00 0.00 32.73 3.02
1490 2820 0.398318 AAGACCCTCACAGGCAAGAC 59.602 55.000 0.00 0.00 32.73 3.01
1491 2821 1.003233 GACCCTCACAGGCAAGACC 60.003 63.158 0.00 0.00 32.73 3.85
1492 2822 1.768684 GACCCTCACAGGCAAGACCA 61.769 60.000 0.00 0.00 43.14 4.02
1493 2823 1.136329 ACCCTCACAGGCAAGACCAT 61.136 55.000 0.00 0.00 43.14 3.55
1494 2824 0.393537 CCCTCACAGGCAAGACCATC 60.394 60.000 0.00 0.00 43.14 3.51
1495 2825 0.325933 CCTCACAGGCAAGACCATCA 59.674 55.000 0.00 0.00 43.14 3.07
1496 2826 1.446907 CTCACAGGCAAGACCATCAC 58.553 55.000 0.00 0.00 43.14 3.06
1497 2827 0.036732 TCACAGGCAAGACCATCACC 59.963 55.000 0.00 0.00 43.14 4.02
1498 2828 0.962356 CACAGGCAAGACCATCACCC 60.962 60.000 0.00 0.00 43.14 4.61
1499 2829 1.136329 ACAGGCAAGACCATCACCCT 61.136 55.000 0.00 0.00 43.14 4.34
1500 2830 0.679002 CAGGCAAGACCATCACCCTG 60.679 60.000 0.00 0.00 43.14 4.45
1501 2831 1.379044 GGCAAGACCATCACCCTGG 60.379 63.158 0.00 0.00 42.35 4.45
1502 2832 1.685224 GCAAGACCATCACCCTGGA 59.315 57.895 0.00 0.00 39.73 3.86
1503 2833 0.393537 GCAAGACCATCACCCTGGAG 60.394 60.000 0.00 0.00 39.73 3.86
1504 2834 0.254178 CAAGACCATCACCCTGGAGG 59.746 60.000 0.00 0.00 39.73 4.30
1513 2843 4.569214 CCCTGGAGGTTGAGTCCT 57.431 61.111 0.00 0.00 40.97 3.85
1519 2849 2.654802 GAGGTTGAGTCCTCGGACA 58.345 57.895 17.68 0.00 46.76 4.02
1520 2850 0.244178 GAGGTTGAGTCCTCGGACAC 59.756 60.000 17.68 12.09 46.76 3.67
1521 2851 1.186267 AGGTTGAGTCCTCGGACACC 61.186 60.000 17.68 15.34 46.76 4.16
1522 2852 1.469335 GGTTGAGTCCTCGGACACCA 61.469 60.000 17.68 11.84 46.76 4.17
1523 2853 0.608640 GTTGAGTCCTCGGACACCAT 59.391 55.000 17.68 0.00 46.76 3.55
1524 2854 0.895530 TTGAGTCCTCGGACACCATC 59.104 55.000 17.68 7.37 46.76 3.51
1525 2855 1.313091 TGAGTCCTCGGACACCATCG 61.313 60.000 17.68 0.00 46.76 3.84
2224 6407 5.517322 AGTCTCGTCTTTGTTTCTGTACT 57.483 39.130 0.00 0.00 0.00 2.73
2309 6494 6.382859 TGGTGAACTATGAATAAGTGAGCCTA 59.617 38.462 0.00 0.00 0.00 3.93
2315 6513 8.594881 ACTATGAATAAGTGAGCCTAAATTCG 57.405 34.615 0.00 0.00 32.31 3.34
2348 6546 4.744137 GCATGATGTTTGCTGTTGTGTTAA 59.256 37.500 0.00 0.00 37.14 2.01
2425 6625 1.419381 TCTGGTTGCTGACTGGTGTA 58.581 50.000 0.00 0.00 0.00 2.90
2446 6646 7.064728 GGTGTATGACTTGATTTCCTCTGTTAC 59.935 40.741 0.00 0.00 0.00 2.50
2453 6653 4.624015 TGATTTCCTCTGTTACGAAACGT 58.376 39.130 1.91 1.91 44.35 3.99
2465 6665 0.228742 CGAAACGTGTGTGTTCCTCG 59.771 55.000 0.00 0.00 0.00 4.63
2516 6718 4.979197 TGTATTTTAAGTGCCAACTTTGCG 59.021 37.500 0.00 0.00 44.47 4.85
2580 6866 5.440234 TGGTGCGTATGTTTGTTGTTTAT 57.560 34.783 0.00 0.00 0.00 1.40
2644 6954 0.590732 CTGCGCCATTCGATCAAAGC 60.591 55.000 4.18 0.00 41.67 3.51
2648 6958 1.003545 CGCCATTCGATCAAAGCGATT 60.004 47.619 14.57 0.00 41.21 3.34
2680 6990 4.039852 GTGATCTCTCCCTCAACCTTATCC 59.960 50.000 0.00 0.00 0.00 2.59
2700 7010 0.674534 ACTCGTCTTCCTCGCAAACT 59.325 50.000 0.00 0.00 0.00 2.66
2701 7011 1.336056 ACTCGTCTTCCTCGCAAACTC 60.336 52.381 0.00 0.00 0.00 3.01
2702 7012 0.038526 TCGTCTTCCTCGCAAACTCC 60.039 55.000 0.00 0.00 0.00 3.85
2703 7013 0.319555 CGTCTTCCTCGCAAACTCCA 60.320 55.000 0.00 0.00 0.00 3.86
2704 7014 1.149148 GTCTTCCTCGCAAACTCCAC 58.851 55.000 0.00 0.00 0.00 4.02
2705 7015 0.756294 TCTTCCTCGCAAACTCCACA 59.244 50.000 0.00 0.00 0.00 4.17
2706 7016 1.140052 TCTTCCTCGCAAACTCCACAA 59.860 47.619 0.00 0.00 0.00 3.33
2707 7017 1.946768 CTTCCTCGCAAACTCCACAAA 59.053 47.619 0.00 0.00 0.00 2.83
2708 7018 2.045561 TCCTCGCAAACTCCACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
2709 7019 2.582052 TCCTCGCAAACTCCACAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
2710 7020 2.552315 TCCTCGCAAACTCCACAAAATC 59.448 45.455 0.00 0.00 0.00 2.17
2711 7021 2.351738 CCTCGCAAACTCCACAAAATCC 60.352 50.000 0.00 0.00 0.00 3.01
2712 7022 2.554032 CTCGCAAACTCCACAAAATCCT 59.446 45.455 0.00 0.00 0.00 3.24
2713 7023 2.552315 TCGCAAACTCCACAAAATCCTC 59.448 45.455 0.00 0.00 0.00 3.71
2714 7024 2.293122 CGCAAACTCCACAAAATCCTCA 59.707 45.455 0.00 0.00 0.00 3.86
2715 7025 3.610114 CGCAAACTCCACAAAATCCTCAG 60.610 47.826 0.00 0.00 0.00 3.35
2716 7026 3.319122 GCAAACTCCACAAAATCCTCAGT 59.681 43.478 0.00 0.00 0.00 3.41
2717 7027 4.794003 GCAAACTCCACAAAATCCTCAGTG 60.794 45.833 0.00 0.00 0.00 3.66
2718 7028 2.508526 ACTCCACAAAATCCTCAGTGC 58.491 47.619 0.00 0.00 0.00 4.40
2719 7029 2.158623 ACTCCACAAAATCCTCAGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
2720 7030 3.087031 CTCCACAAAATCCTCAGTGCAT 58.913 45.455 0.00 0.00 0.00 3.96
2721 7031 3.084039 TCCACAAAATCCTCAGTGCATC 58.916 45.455 0.00 0.00 0.00 3.91
2722 7032 2.821378 CCACAAAATCCTCAGTGCATCA 59.179 45.455 0.00 0.00 0.00 3.07
2723 7033 3.256383 CCACAAAATCCTCAGTGCATCAA 59.744 43.478 0.00 0.00 0.00 2.57
2724 7034 4.232221 CACAAAATCCTCAGTGCATCAAC 58.768 43.478 0.00 0.00 0.00 3.18
2725 7035 4.022589 CACAAAATCCTCAGTGCATCAACT 60.023 41.667 0.00 0.00 0.00 3.16
2726 7036 4.217118 ACAAAATCCTCAGTGCATCAACTC 59.783 41.667 0.00 0.00 0.00 3.01
2727 7037 3.708403 AATCCTCAGTGCATCAACTCA 57.292 42.857 0.00 0.00 0.00 3.41
2728 7038 3.928005 ATCCTCAGTGCATCAACTCAT 57.072 42.857 0.00 0.00 0.00 2.90
2729 7039 3.257469 TCCTCAGTGCATCAACTCATC 57.743 47.619 0.00 0.00 0.00 2.92
2730 7040 2.836372 TCCTCAGTGCATCAACTCATCT 59.164 45.455 0.00 0.00 0.00 2.90
2731 7041 3.118847 TCCTCAGTGCATCAACTCATCTC 60.119 47.826 0.00 0.00 0.00 2.75
2732 7042 3.369157 CCTCAGTGCATCAACTCATCTCA 60.369 47.826 0.00 0.00 0.00 3.27
2733 7043 4.443621 CTCAGTGCATCAACTCATCTCAT 58.556 43.478 0.00 0.00 0.00 2.90
2753 7071 1.368641 TATGTTGTGCGGTCTGATGC 58.631 50.000 0.00 0.00 0.00 3.91
2760 7078 2.818132 CGGTCTGATGCCCTCTCC 59.182 66.667 0.00 0.00 0.00 3.71
2761 7079 1.760086 CGGTCTGATGCCCTCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
2762 7080 1.743321 CGGTCTGATGCCCTCTCCTC 61.743 65.000 0.00 0.00 0.00 3.71
2763 7081 0.398381 GGTCTGATGCCCTCTCCTCT 60.398 60.000 0.00 0.00 0.00 3.69
2764 7082 1.039856 GTCTGATGCCCTCTCCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
2765 7083 0.633378 TCTGATGCCCTCTCCTCTCA 59.367 55.000 0.00 0.00 0.00 3.27
2766 7084 0.752054 CTGATGCCCTCTCCTCTCAC 59.248 60.000 0.00 0.00 0.00 3.51
2767 7085 1.039785 TGATGCCCTCTCCTCTCACG 61.040 60.000 0.00 0.00 0.00 4.35
2768 7086 1.743321 GATGCCCTCTCCTCTCACGG 61.743 65.000 0.00 0.00 0.00 4.94
2769 7087 2.363147 GCCCTCTCCTCTCACGGT 60.363 66.667 0.00 0.00 0.00 4.83
2770 7088 2.716017 GCCCTCTCCTCTCACGGTG 61.716 68.421 0.56 0.56 0.00 4.94
2771 7089 2.055042 CCCTCTCCTCTCACGGTGG 61.055 68.421 8.50 0.00 0.00 4.61
2772 7090 2.716017 CCTCTCCTCTCACGGTGGC 61.716 68.421 8.50 0.00 0.00 5.01
2773 7091 3.057547 CTCTCCTCTCACGGTGGCG 62.058 68.421 8.50 0.19 0.00 5.69
2774 7092 4.803426 CTCCTCTCACGGTGGCGC 62.803 72.222 8.50 0.00 0.00 6.53
2777 7095 2.887568 CTCTCACGGTGGCGCATC 60.888 66.667 10.83 0.18 0.00 3.91
2789 7107 3.133014 CGCATCCGATGACCTCCT 58.867 61.111 12.79 0.00 36.29 3.69
2790 7108 1.300465 CGCATCCGATGACCTCCTG 60.300 63.158 12.79 0.00 36.29 3.86
2800 7118 1.371558 GACCTCCTGCCAAAGACGT 59.628 57.895 0.00 0.00 0.00 4.34
2806 7124 1.447317 CCTGCCAAAGACGTTGCTGT 61.447 55.000 0.00 0.00 35.74 4.40
2807 7125 0.381801 CTGCCAAAGACGTTGCTGTT 59.618 50.000 0.00 0.00 35.74 3.16
2810 7128 0.929824 CCAAAGACGTTGCTGTTGCG 60.930 55.000 0.00 0.00 43.34 4.85
2811 7129 0.929824 CAAAGACGTTGCTGTTGCGG 60.930 55.000 0.00 0.00 43.34 5.69
2812 7130 1.092921 AAAGACGTTGCTGTTGCGGA 61.093 50.000 0.00 0.00 43.34 5.54
2813 7131 1.498865 AAGACGTTGCTGTTGCGGAG 61.499 55.000 0.00 0.00 43.34 4.63
2814 7132 2.203015 ACGTTGCTGTTGCGGAGT 60.203 55.556 0.00 0.00 43.34 3.85
2815 7133 2.249309 CGTTGCTGTTGCGGAGTG 59.751 61.111 0.00 0.00 43.34 3.51
2816 7134 2.243957 CGTTGCTGTTGCGGAGTGA 61.244 57.895 0.00 0.00 43.34 3.41
2817 7135 1.771073 CGTTGCTGTTGCGGAGTGAA 61.771 55.000 0.00 0.00 43.34 3.18
2818 7136 0.317020 GTTGCTGTTGCGGAGTGAAC 60.317 55.000 0.00 0.00 43.34 3.18
2819 7137 0.746204 TTGCTGTTGCGGAGTGAACA 60.746 50.000 0.00 0.00 43.34 3.18
2820 7138 0.534877 TGCTGTTGCGGAGTGAACAT 60.535 50.000 0.00 0.00 43.34 2.71
2821 7139 0.110056 GCTGTTGCGGAGTGAACATG 60.110 55.000 0.00 0.00 31.81 3.21
2822 7140 1.229428 CTGTTGCGGAGTGAACATGT 58.771 50.000 0.00 0.00 31.81 3.21
2823 7141 0.943673 TGTTGCGGAGTGAACATGTG 59.056 50.000 0.00 0.00 0.00 3.21
2824 7142 0.238289 GTTGCGGAGTGAACATGTGG 59.762 55.000 0.00 0.00 0.00 4.17
2844 7162 4.988598 CTGCAGCGTCGGGGTGTT 62.989 66.667 0.00 0.00 45.88 3.32
2845 7163 4.980805 TGCAGCGTCGGGGTGTTC 62.981 66.667 8.07 0.00 45.88 3.18
2899 7217 4.228097 GTGCATGCGCGCCACTAG 62.228 66.667 30.77 14.50 43.09 2.57
2949 7268 0.512952 GTTGTGTCATCGCTGGTGTC 59.487 55.000 0.00 0.00 0.00 3.67
2950 7269 0.105778 TTGTGTCATCGCTGGTGTCA 59.894 50.000 0.00 0.00 0.00 3.58
2962 7281 1.302511 GGTGTCATGGAGTTGCCGT 60.303 57.895 0.00 0.00 40.66 5.68
2963 7282 0.889186 GGTGTCATGGAGTTGCCGTT 60.889 55.000 0.00 0.00 40.66 4.44
2964 7283 0.238289 GTGTCATGGAGTTGCCGTTG 59.762 55.000 0.00 0.00 40.66 4.10
2965 7284 1.210155 GTCATGGAGTTGCCGTTGC 59.790 57.895 0.00 0.00 40.66 4.17
2974 7293 2.441164 TGCCGTTGCAAAGTGGGT 60.441 55.556 11.48 0.00 46.66 4.51
2975 7294 2.027460 GCCGTTGCAAAGTGGGTG 59.973 61.111 11.48 0.00 37.47 4.61
2976 7295 2.781158 GCCGTTGCAAAGTGGGTGT 61.781 57.895 11.48 0.00 37.47 4.16
2977 7296 1.358759 CCGTTGCAAAGTGGGTGTC 59.641 57.895 11.48 0.00 0.00 3.67
2978 7297 1.380403 CCGTTGCAAAGTGGGTGTCA 61.380 55.000 11.48 0.00 0.00 3.58
2979 7298 0.453793 CGTTGCAAAGTGGGTGTCAA 59.546 50.000 0.00 0.00 0.00 3.18
2980 7299 1.533756 CGTTGCAAAGTGGGTGTCAAG 60.534 52.381 0.00 0.00 0.00 3.02
2981 7300 1.110442 TTGCAAAGTGGGTGTCAAGG 58.890 50.000 0.00 0.00 0.00 3.61
2982 7301 0.754957 TGCAAAGTGGGTGTCAAGGG 60.755 55.000 0.00 0.00 0.00 3.95
2983 7302 2.041153 CAAAGTGGGTGTCAAGGGC 58.959 57.895 0.00 0.00 0.00 5.19
2984 7303 1.528309 AAAGTGGGTGTCAAGGGCG 60.528 57.895 0.00 0.00 0.00 6.13
2985 7304 2.976494 AAAGTGGGTGTCAAGGGCGG 62.976 60.000 0.00 0.00 0.00 6.13
2986 7305 3.948719 GTGGGTGTCAAGGGCGGA 61.949 66.667 0.00 0.00 0.00 5.54
2987 7306 3.948719 TGGGTGTCAAGGGCGGAC 61.949 66.667 0.00 0.00 35.83 4.79
2988 7307 3.948719 GGGTGTCAAGGGCGGACA 61.949 66.667 1.78 1.78 42.62 4.02
2991 7310 3.228017 TGTCAAGGGCGGACACGA 61.228 61.111 0.00 0.00 44.60 4.35
2992 7311 2.432628 GTCAAGGGCGGACACGAG 60.433 66.667 0.00 0.00 44.60 4.18
2993 7312 2.915659 TCAAGGGCGGACACGAGT 60.916 61.111 0.00 0.00 44.60 4.18
2994 7313 2.030562 CAAGGGCGGACACGAGTT 59.969 61.111 0.00 0.00 44.60 3.01
2995 7314 1.597027 CAAGGGCGGACACGAGTTT 60.597 57.895 0.00 0.00 44.60 2.66
2996 7315 1.147600 AAGGGCGGACACGAGTTTT 59.852 52.632 0.00 0.00 44.60 2.43
2997 7316 0.393820 AAGGGCGGACACGAGTTTTA 59.606 50.000 0.00 0.00 44.60 1.52
2998 7317 0.393820 AGGGCGGACACGAGTTTTAA 59.606 50.000 0.00 0.00 44.60 1.52
3042 7910 2.627945 TCGCAACAAGTGAAACAGAGT 58.372 42.857 0.00 0.00 41.43 3.24
3048 7916 5.122396 GCAACAAGTGAAACAGAGTATAGGG 59.878 44.000 0.00 0.00 41.43 3.53
3085 7953 2.202892 GTGACCCGGCCGATCTTC 60.203 66.667 30.73 16.94 0.00 2.87
3115 7983 3.208383 CCAGCCAACGTGTGCACA 61.208 61.111 17.42 17.42 0.00 4.57
3120 7988 3.591835 CAACGTGTGCACACCCCC 61.592 66.667 37.23 18.32 43.66 5.40
3124 7992 2.282180 GTGTGCACACCCCCGAAT 60.282 61.111 34.94 0.00 40.85 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.469008 TTGGATCGGATGTGTGGATAC 57.531 47.619 0.00 0.00 0.00 2.24
10 11 2.224621 GGATTGGATCGGATGTGTGGAT 60.225 50.000 0.00 0.00 0.00 3.41
82 86 2.103340 GACGAGAGAGCCTTCGCC 59.897 66.667 0.00 0.00 34.57 5.54
233 243 2.619177 CCACAGATCTACTCCGAACGAT 59.381 50.000 0.00 0.00 0.00 3.73
239 255 0.747255 CCACCCACAGATCTACTCCG 59.253 60.000 0.00 0.00 0.00 4.63
288 304 3.057456 ACATCGACTAACTGAACGAGCTT 60.057 43.478 0.00 0.00 38.12 3.74
298 314 5.593010 GAGCCTAATCAACATCGACTAACT 58.407 41.667 0.00 0.00 0.00 2.24
308 324 4.832248 ACAAGAATCGAGCCTAATCAACA 58.168 39.130 0.00 0.00 0.00 3.33
328 345 6.829811 TCATGGCATGATCAAGAGATTTAACA 59.170 34.615 25.63 0.00 33.72 2.41
370 423 0.530650 AGCAATCGCATCGGAATCGT 60.531 50.000 0.00 0.00 42.27 3.73
407 460 6.126741 CGCAATAATACAACTACAACCGATG 58.873 40.000 0.00 0.00 0.00 3.84
523 619 9.698309 ACTACATAGAATAATCGAATCAACAGG 57.302 33.333 0.00 0.00 0.00 4.00
555 652 7.633621 CGCTTCAGAATCAGAAATTAGCATAA 58.366 34.615 0.00 0.00 0.00 1.90
556 653 6.293081 GCGCTTCAGAATCAGAAATTAGCATA 60.293 38.462 0.00 0.00 0.00 3.14
557 654 5.505324 GCGCTTCAGAATCAGAAATTAGCAT 60.505 40.000 0.00 0.00 0.00 3.79
563 673 3.341823 ACAGCGCTTCAGAATCAGAAAT 58.658 40.909 7.50 0.00 0.00 2.17
573 683 2.029838 ATCCCTTAACAGCGCTTCAG 57.970 50.000 7.50 0.00 0.00 3.02
576 686 2.629051 GTGTATCCCTTAACAGCGCTT 58.371 47.619 7.50 0.00 0.00 4.68
580 690 3.055385 TCACAGGTGTATCCCTTAACAGC 60.055 47.826 0.00 0.00 42.87 4.40
585 705 4.227300 AGCAAATCACAGGTGTATCCCTTA 59.773 41.667 0.00 0.00 36.75 2.69
610 730 1.084370 CCAAGCGACTAGAAAGCCGG 61.084 60.000 0.00 0.00 0.00 6.13
612 732 1.066787 ACTCCAAGCGACTAGAAAGCC 60.067 52.381 0.00 0.00 0.00 4.35
623 770 4.267928 GCACAACTAAGTATACTCCAAGCG 59.732 45.833 5.70 2.90 0.00 4.68
629 776 9.098355 TGAATTGATGCACAACTAAGTATACTC 57.902 33.333 5.70 0.00 41.52 2.59
635 782 6.639632 AGTTGAATTGATGCACAACTAAGT 57.360 33.333 14.44 6.40 46.84 2.24
644 792 5.532032 TGAACTGAAGAGTTGAATTGATGCA 59.468 36.000 0.00 0.00 42.80 3.96
662 1359 0.865111 TCGCAAACCGACATGAACTG 59.135 50.000 0.00 0.00 41.89 3.16
693 1399 5.382664 AGGTGGTTAAGAAGTCAAGGAAA 57.617 39.130 0.00 0.00 0.00 3.13
699 1405 3.006537 CCGAGAAGGTGGTTAAGAAGTCA 59.993 47.826 0.00 0.00 34.51 3.41
720 1429 7.168804 GGAGCATACGTAATCTAAAGTTGTACC 59.831 40.741 0.00 0.00 0.00 3.34
729 1438 4.891168 TCAGTGGGAGCATACGTAATCTAA 59.109 41.667 0.00 0.00 0.00 2.10
738 1447 3.906720 TTACCTTCAGTGGGAGCATAC 57.093 47.619 0.00 0.00 0.00 2.39
808 1518 5.353111 CCAATGAATTGACATAGCATGCAA 58.647 37.500 21.98 4.19 40.14 4.08
835 1931 1.078143 GGAGCTGCCCCAGTACAAG 60.078 63.158 0.00 0.00 33.43 3.16
838 1934 2.586792 CAGGAGCTGCCCCAGTAC 59.413 66.667 2.14 0.00 37.37 2.73
896 2007 0.625316 ACCAGATGGCACCATGCTAA 59.375 50.000 6.96 0.00 44.28 3.09
932 2044 4.991153 TCTTCACGAAGATCTGCAGTAT 57.009 40.909 14.67 5.98 42.06 2.12
943 2055 1.403780 CCGGTAAGGGTCTTCACGAAG 60.404 57.143 0.00 0.08 36.69 3.79
945 2057 1.880819 GCCGGTAAGGGTCTTCACGA 61.881 60.000 1.90 0.00 41.48 4.35
947 2059 0.035739 TTGCCGGTAAGGGTCTTCAC 59.964 55.000 0.00 0.00 41.48 3.18
950 2062 0.769247 AAGTTGCCGGTAAGGGTCTT 59.231 50.000 4.75 2.40 41.48 3.01
952 2064 1.277273 AGTAAGTTGCCGGTAAGGGTC 59.723 52.381 4.75 0.00 41.48 4.46
955 2067 2.618053 CAGAGTAAGTTGCCGGTAAGG 58.382 52.381 4.75 0.00 44.97 2.69
956 2068 2.028385 ACCAGAGTAAGTTGCCGGTAAG 60.028 50.000 4.75 0.00 0.00 2.34
958 2070 1.636148 ACCAGAGTAAGTTGCCGGTA 58.364 50.000 1.90 0.00 0.00 4.02
959 2071 0.763035 AACCAGAGTAAGTTGCCGGT 59.237 50.000 1.90 0.00 0.00 5.28
960 2072 1.002087 AGAACCAGAGTAAGTTGCCGG 59.998 52.381 0.00 0.00 0.00 6.13
961 2073 2.069273 CAGAACCAGAGTAAGTTGCCG 58.931 52.381 0.00 0.00 0.00 5.69
962 2074 3.067833 GACAGAACCAGAGTAAGTTGCC 58.932 50.000 0.00 0.00 0.00 4.52
963 2075 3.743396 CAGACAGAACCAGAGTAAGTTGC 59.257 47.826 0.00 0.00 0.00 4.17
1089 2419 1.566298 GGATGCCCTCCTTGTCCTGT 61.566 60.000 0.00 0.00 41.29 4.00
1287 2617 3.057315 CCTTCACATTGTCAATGGTGTCC 60.057 47.826 25.59 0.00 43.21 4.02
1299 2629 2.426024 CTGGATCTTGGCCTTCACATTG 59.574 50.000 3.32 0.00 0.00 2.82
1344 2674 1.718396 CAAAGATGAGACGCTGCTGA 58.282 50.000 0.00 0.00 0.00 4.26
1365 2695 1.748122 ATCCTCAAGCTGCTTGCCG 60.748 57.895 32.02 24.49 44.23 5.69
1428 2758 1.673665 GAGCCTGAGCACCAAGTGG 60.674 63.158 0.00 0.00 43.56 4.00
1429 2759 3.978272 GAGCCTGAGCACCAAGTG 58.022 61.111 0.00 0.00 43.56 3.16
1434 2764 4.767255 CCACGGAGCCTGAGCACC 62.767 72.222 0.00 0.00 45.50 5.01
1435 2765 4.008933 ACCACGGAGCCTGAGCAC 62.009 66.667 0.00 0.00 43.56 4.40
1436 2766 4.007644 CACCACGGAGCCTGAGCA 62.008 66.667 0.00 0.00 43.56 4.26
1437 2767 4.767255 CCACCACGGAGCCTGAGC 62.767 72.222 0.00 0.00 36.56 4.26
1438 2768 1.330655 ATACCACCACGGAGCCTGAG 61.331 60.000 0.00 0.00 38.63 3.35
1439 2769 1.305802 ATACCACCACGGAGCCTGA 60.306 57.895 0.00 0.00 38.63 3.86
1440 2770 1.153369 CATACCACCACGGAGCCTG 60.153 63.158 0.00 0.00 38.63 4.85
1441 2771 3.031417 GCATACCACCACGGAGCCT 62.031 63.158 0.00 0.00 38.63 4.58
1442 2772 2.513897 GCATACCACCACGGAGCC 60.514 66.667 0.00 0.00 38.63 4.70
1443 2773 1.815421 CTGCATACCACCACGGAGC 60.815 63.158 0.00 0.00 38.63 4.70
1444 2774 0.465705 ATCTGCATACCACCACGGAG 59.534 55.000 0.00 0.00 38.63 4.63
1445 2775 0.464036 GATCTGCATACCACCACGGA 59.536 55.000 0.00 0.00 38.63 4.69
1446 2776 0.465705 AGATCTGCATACCACCACGG 59.534 55.000 0.00 0.00 42.50 4.94
1447 2777 2.205074 GAAGATCTGCATACCACCACG 58.795 52.381 0.00 0.00 0.00 4.94
1448 2778 2.205074 CGAAGATCTGCATACCACCAC 58.795 52.381 0.51 0.00 0.00 4.16
1449 2779 1.831106 ACGAAGATCTGCATACCACCA 59.169 47.619 0.51 0.00 0.00 4.17
1450 2780 2.159099 TGACGAAGATCTGCATACCACC 60.159 50.000 0.51 0.00 0.00 4.61
1451 2781 3.165058 TGACGAAGATCTGCATACCAC 57.835 47.619 0.51 0.00 0.00 4.16
1452 2782 3.447229 TCTTGACGAAGATCTGCATACCA 59.553 43.478 0.51 0.00 32.98 3.25
1453 2783 3.799420 GTCTTGACGAAGATCTGCATACC 59.201 47.826 0.51 0.00 40.40 2.73
1454 2784 3.799420 GGTCTTGACGAAGATCTGCATAC 59.201 47.826 0.51 0.00 40.40 2.39
1455 2785 3.181475 GGGTCTTGACGAAGATCTGCATA 60.181 47.826 0.51 0.00 40.40 3.14
1456 2786 2.419297 GGGTCTTGACGAAGATCTGCAT 60.419 50.000 0.51 0.00 40.40 3.96
1457 2787 1.066858 GGGTCTTGACGAAGATCTGCA 60.067 52.381 0.51 0.00 40.40 4.41
1458 2788 1.205893 AGGGTCTTGACGAAGATCTGC 59.794 52.381 0.00 0.00 40.40 4.26
1459 2789 2.493675 TGAGGGTCTTGACGAAGATCTG 59.506 50.000 0.00 0.00 40.40 2.90
1460 2790 2.494073 GTGAGGGTCTTGACGAAGATCT 59.506 50.000 0.00 0.00 40.40 2.75
1461 2791 2.231478 TGTGAGGGTCTTGACGAAGATC 59.769 50.000 0.00 0.00 40.40 2.75
1462 2792 2.232452 CTGTGAGGGTCTTGACGAAGAT 59.768 50.000 0.00 0.00 40.40 2.40
1463 2793 1.613925 CTGTGAGGGTCTTGACGAAGA 59.386 52.381 0.00 0.00 35.75 2.87
1464 2794 1.337260 CCTGTGAGGGTCTTGACGAAG 60.337 57.143 0.00 0.00 0.00 3.79
1465 2795 0.679505 CCTGTGAGGGTCTTGACGAA 59.320 55.000 0.00 0.00 0.00 3.85
1466 2796 1.816863 GCCTGTGAGGGTCTTGACGA 61.817 60.000 0.00 0.00 35.37 4.20
1467 2797 1.374758 GCCTGTGAGGGTCTTGACG 60.375 63.158 0.00 0.00 35.37 4.35
1468 2798 0.108585 TTGCCTGTGAGGGTCTTGAC 59.891 55.000 0.00 0.00 35.37 3.18
1469 2799 0.397941 CTTGCCTGTGAGGGTCTTGA 59.602 55.000 0.00 0.00 35.37 3.02
1470 2800 0.397941 TCTTGCCTGTGAGGGTCTTG 59.602 55.000 0.00 0.00 35.37 3.02
1471 2801 0.398318 GTCTTGCCTGTGAGGGTCTT 59.602 55.000 0.00 0.00 35.37 3.01
1472 2802 1.484444 GGTCTTGCCTGTGAGGGTCT 61.484 60.000 0.00 0.00 35.37 3.85
1473 2803 1.003233 GGTCTTGCCTGTGAGGGTC 60.003 63.158 0.00 0.00 35.37 4.46
1474 2804 1.136329 ATGGTCTTGCCTGTGAGGGT 61.136 55.000 0.00 0.00 35.37 4.34
1475 2805 0.393537 GATGGTCTTGCCTGTGAGGG 60.394 60.000 0.00 0.00 35.37 4.30
1476 2806 0.325933 TGATGGTCTTGCCTGTGAGG 59.674 55.000 0.00 0.00 38.80 3.86
1477 2807 1.446907 GTGATGGTCTTGCCTGTGAG 58.553 55.000 0.00 0.00 38.35 3.51
1478 2808 0.036732 GGTGATGGTCTTGCCTGTGA 59.963 55.000 0.00 0.00 38.35 3.58
1479 2809 0.962356 GGGTGATGGTCTTGCCTGTG 60.962 60.000 0.00 0.00 38.35 3.66
1480 2810 1.136329 AGGGTGATGGTCTTGCCTGT 61.136 55.000 0.00 0.00 38.35 4.00
1481 2811 0.679002 CAGGGTGATGGTCTTGCCTG 60.679 60.000 0.00 0.00 38.35 4.85
1482 2812 1.687612 CAGGGTGATGGTCTTGCCT 59.312 57.895 0.00 0.00 38.35 4.75
1483 2813 1.379044 CCAGGGTGATGGTCTTGCC 60.379 63.158 0.00 0.00 35.47 4.52
1484 2814 0.393537 CTCCAGGGTGATGGTCTTGC 60.394 60.000 0.00 0.00 41.43 4.01
1485 2815 0.254178 CCTCCAGGGTGATGGTCTTG 59.746 60.000 0.00 0.00 41.43 3.02
1486 2816 2.702093 CCTCCAGGGTGATGGTCTT 58.298 57.895 0.00 0.00 41.43 3.01
1487 2817 4.488303 CCTCCAGGGTGATGGTCT 57.512 61.111 0.00 0.00 41.43 3.85
1496 2826 4.569214 AGGACTCAACCTCCAGGG 57.431 61.111 0.00 0.00 40.27 4.45
1502 2832 1.186267 GGTGTCCGAGGACTCAACCT 61.186 60.000 21.35 0.00 44.80 3.50
1503 2833 1.292541 GGTGTCCGAGGACTCAACC 59.707 63.158 21.35 16.68 44.80 3.77
1504 2834 0.608640 ATGGTGTCCGAGGACTCAAC 59.391 55.000 21.35 12.12 44.80 3.18
1505 2835 0.895530 GATGGTGTCCGAGGACTCAA 59.104 55.000 21.35 12.99 44.80 3.02
1506 2836 1.313091 CGATGGTGTCCGAGGACTCA 61.313 60.000 21.35 18.55 44.80 3.41
1507 2837 1.433879 CGATGGTGTCCGAGGACTC 59.566 63.158 21.35 17.63 44.80 3.36
1508 2838 3.604629 CGATGGTGTCCGAGGACT 58.395 61.111 21.35 2.80 44.80 3.85
1982 5539 2.032894 CACGTTGTCAATGGTGTCAGAC 60.033 50.000 9.56 0.00 0.00 3.51
2224 6407 3.682377 CGGTAACACTGCATCAATGTACA 59.318 43.478 0.00 0.00 0.00 2.90
2309 6494 4.582701 TCATGCAAGACAAACCGAATTT 57.417 36.364 0.00 0.00 0.00 1.82
2315 6513 3.184986 GCAAACATCATGCAAGACAAACC 59.815 43.478 0.00 0.00 43.29 3.27
2348 6546 7.885399 AGAAAGATAGCAAGAAACCACAGTATT 59.115 33.333 0.00 0.00 0.00 1.89
2425 6625 6.037786 TCGTAACAGAGGAAATCAAGTCAT 57.962 37.500 0.00 0.00 0.00 3.06
2446 6646 0.228742 CGAGGAACACACACGTTTCG 59.771 55.000 0.00 0.00 29.01 3.46
2453 6653 1.661617 CAAACGTTCGAGGAACACACA 59.338 47.619 0.00 0.00 42.05 3.72
2465 6665 6.964934 AGTACACAAAATCAGTTCAAACGTTC 59.035 34.615 0.00 0.00 0.00 3.95
2516 6718 3.157087 TCAGAAAATTGGAGGCCAGAAC 58.843 45.455 5.01 0.00 33.81 3.01
2632 6942 3.181507 CCACACAATCGCTTTGATCGAAT 60.182 43.478 0.00 0.00 39.54 3.34
2636 6946 1.470098 AGCCACACAATCGCTTTGATC 59.530 47.619 5.13 0.00 38.76 2.92
2644 6954 1.662629 GAGATCACAGCCACACAATCG 59.337 52.381 0.00 0.00 0.00 3.34
2648 6958 0.610174 GGAGAGATCACAGCCACACA 59.390 55.000 0.00 0.00 0.00 3.72
2680 6990 0.784778 GTTTGCGAGGAAGACGAGTG 59.215 55.000 0.00 0.00 0.00 3.51
2700 7010 2.655090 TGCACTGAGGATTTTGTGGA 57.345 45.000 0.00 0.00 0.00 4.02
2701 7011 2.821378 TGATGCACTGAGGATTTTGTGG 59.179 45.455 0.00 0.00 0.00 4.17
2702 7012 4.022589 AGTTGATGCACTGAGGATTTTGTG 60.023 41.667 0.00 0.00 0.00 3.33
2703 7013 4.147321 AGTTGATGCACTGAGGATTTTGT 58.853 39.130 0.00 0.00 0.00 2.83
2704 7014 4.216902 TGAGTTGATGCACTGAGGATTTTG 59.783 41.667 0.00 0.00 0.00 2.44
2705 7015 4.401022 TGAGTTGATGCACTGAGGATTTT 58.599 39.130 0.00 0.00 0.00 1.82
2706 7016 4.025040 TGAGTTGATGCACTGAGGATTT 57.975 40.909 0.00 0.00 0.00 2.17
2707 7017 3.708403 TGAGTTGATGCACTGAGGATT 57.292 42.857 0.00 0.00 0.00 3.01
2708 7018 3.455177 AGATGAGTTGATGCACTGAGGAT 59.545 43.478 0.00 0.00 0.00 3.24
2709 7019 2.836372 AGATGAGTTGATGCACTGAGGA 59.164 45.455 0.00 0.00 0.00 3.71
2710 7020 3.196463 GAGATGAGTTGATGCACTGAGG 58.804 50.000 0.00 0.00 0.00 3.86
2711 7021 3.858247 TGAGATGAGTTGATGCACTGAG 58.142 45.455 0.00 0.00 0.00 3.35
2712 7022 3.967332 TGAGATGAGTTGATGCACTGA 57.033 42.857 0.00 0.00 0.00 3.41
2713 7023 6.260271 ACATAATGAGATGAGTTGATGCACTG 59.740 38.462 0.00 0.00 0.00 3.66
2714 7024 6.354938 ACATAATGAGATGAGTTGATGCACT 58.645 36.000 0.00 0.00 0.00 4.40
2715 7025 6.615264 ACATAATGAGATGAGTTGATGCAC 57.385 37.500 0.00 0.00 0.00 4.57
2716 7026 6.600427 ACAACATAATGAGATGAGTTGATGCA 59.400 34.615 9.73 0.00 38.80 3.96
2717 7027 6.910972 CACAACATAATGAGATGAGTTGATGC 59.089 38.462 9.73 0.00 38.80 3.91
2718 7028 6.910972 GCACAACATAATGAGATGAGTTGATG 59.089 38.462 9.73 5.94 38.80 3.07
2719 7029 6.238293 CGCACAACATAATGAGATGAGTTGAT 60.238 38.462 9.73 0.00 38.80 2.57
2720 7030 5.063817 CGCACAACATAATGAGATGAGTTGA 59.936 40.000 9.73 0.00 38.80 3.18
2721 7031 5.260900 CGCACAACATAATGAGATGAGTTG 58.739 41.667 0.00 0.00 41.37 3.16
2722 7032 4.333649 CCGCACAACATAATGAGATGAGTT 59.666 41.667 0.00 0.00 0.00 3.01
2723 7033 3.873361 CCGCACAACATAATGAGATGAGT 59.127 43.478 0.00 0.00 0.00 3.41
2724 7034 3.873361 ACCGCACAACATAATGAGATGAG 59.127 43.478 0.00 0.00 0.00 2.90
2725 7035 3.871006 GACCGCACAACATAATGAGATGA 59.129 43.478 0.00 0.00 0.00 2.92
2726 7036 3.873361 AGACCGCACAACATAATGAGATG 59.127 43.478 0.00 0.00 0.00 2.90
2727 7037 3.873361 CAGACCGCACAACATAATGAGAT 59.127 43.478 0.00 0.00 0.00 2.75
2728 7038 3.056179 TCAGACCGCACAACATAATGAGA 60.056 43.478 0.00 0.00 0.00 3.27
2729 7039 3.261580 TCAGACCGCACAACATAATGAG 58.738 45.455 0.00 0.00 0.00 2.90
2730 7040 3.326836 TCAGACCGCACAACATAATGA 57.673 42.857 0.00 0.00 0.00 2.57
2731 7041 3.789791 GCATCAGACCGCACAACATAATG 60.790 47.826 0.00 0.00 0.00 1.90
2732 7042 2.355756 GCATCAGACCGCACAACATAAT 59.644 45.455 0.00 0.00 0.00 1.28
2733 7043 1.737236 GCATCAGACCGCACAACATAA 59.263 47.619 0.00 0.00 0.00 1.90
2753 7071 2.055042 CCACCGTGAGAGGAGAGGG 61.055 68.421 0.00 0.00 34.73 4.30
2760 7078 2.887568 GATGCGCCACCGTGAGAG 60.888 66.667 4.18 0.00 36.67 3.20
2761 7079 4.451150 GGATGCGCCACCGTGAGA 62.451 66.667 4.18 0.00 36.34 3.27
2767 7085 3.272334 GTCATCGGATGCGCCACC 61.272 66.667 13.15 7.49 35.94 4.61
2768 7086 3.272334 GGTCATCGGATGCGCCAC 61.272 66.667 19.50 11.09 35.94 5.01
2769 7087 3.445518 GAGGTCATCGGATGCGCCA 62.446 63.158 23.52 4.19 35.94 5.69
2770 7088 2.663188 GAGGTCATCGGATGCGCC 60.663 66.667 13.15 15.94 0.00 6.53
2771 7089 2.663188 GGAGGTCATCGGATGCGC 60.663 66.667 13.15 0.00 0.00 6.09
2772 7090 1.300465 CAGGAGGTCATCGGATGCG 60.300 63.158 13.15 0.00 0.00 4.73
2773 7091 1.596477 GCAGGAGGTCATCGGATGC 60.596 63.158 13.15 8.25 0.00 3.91
2774 7092 1.070445 GGCAGGAGGTCATCGGATG 59.930 63.158 11.79 11.79 0.00 3.51
2777 7095 0.745845 CTTTGGCAGGAGGTCATCGG 60.746 60.000 0.00 0.00 0.00 4.18
2789 7107 0.100325 CAACAGCAACGTCTTTGGCA 59.900 50.000 0.00 0.00 35.51 4.92
2790 7108 1.208642 GCAACAGCAACGTCTTTGGC 61.209 55.000 0.00 0.00 35.51 4.52
2800 7118 0.746204 TGTTCACTCCGCAACAGCAA 60.746 50.000 0.00 0.00 0.00 3.91
2806 7124 0.179032 ACCACATGTTCACTCCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
2807 7125 0.884259 CACCACATGTTCACTCCGCA 60.884 55.000 0.00 0.00 0.00 5.69
2810 7128 0.877071 CAGCACCACATGTTCACTCC 59.123 55.000 0.00 0.00 0.00 3.85
2811 7129 0.239347 GCAGCACCACATGTTCACTC 59.761 55.000 0.00 0.00 0.00 3.51
2812 7130 0.466007 TGCAGCACCACATGTTCACT 60.466 50.000 0.00 0.00 0.00 3.41
2813 7131 0.039798 CTGCAGCACCACATGTTCAC 60.040 55.000 0.00 0.00 0.00 3.18
2814 7132 1.798234 GCTGCAGCACCACATGTTCA 61.798 55.000 33.36 0.00 41.59 3.18
2815 7133 1.080974 GCTGCAGCACCACATGTTC 60.081 57.895 33.36 0.00 41.59 3.18
2816 7134 2.911484 CGCTGCAGCACCACATGTT 61.911 57.895 36.03 0.00 42.21 2.71
2817 7135 3.359523 CGCTGCAGCACCACATGT 61.360 61.111 36.03 0.00 42.21 3.21
2818 7136 3.318539 GACGCTGCAGCACCACATG 62.319 63.158 36.03 20.96 42.21 3.21
2819 7137 3.052082 GACGCTGCAGCACCACAT 61.052 61.111 36.03 15.03 42.21 3.21
2839 7157 3.041940 CTCACGGCACCGAACACC 61.042 66.667 17.40 0.00 42.83 4.16
2840 7158 3.041940 CCTCACGGCACCGAACAC 61.042 66.667 17.40 0.00 42.83 3.32
2841 7159 4.308458 CCCTCACGGCACCGAACA 62.308 66.667 17.40 0.00 42.83 3.18
2842 7160 3.819877 AACCCTCACGGCACCGAAC 62.820 63.158 17.40 0.00 42.83 3.95
2843 7161 3.552384 AACCCTCACGGCACCGAA 61.552 61.111 17.40 2.38 42.83 4.30
2844 7162 4.308458 CAACCCTCACGGCACCGA 62.308 66.667 17.40 0.00 42.83 4.69
2845 7163 3.229156 TACAACCCTCACGGCACCG 62.229 63.158 7.71 7.71 46.03 4.94
2846 7164 1.670083 GTACAACCCTCACGGCACC 60.670 63.158 0.00 0.00 33.26 5.01
2847 7165 1.670083 GGTACAACCCTCACGGCAC 60.670 63.158 0.00 0.00 33.26 5.01
2860 7178 1.072266 ACTTCCAGCAATGGGGTACA 58.928 50.000 0.00 0.00 0.00 2.90
2861 7179 1.463674 CACTTCCAGCAATGGGGTAC 58.536 55.000 0.00 0.00 0.00 3.34
2863 7181 1.077265 CCACTTCCAGCAATGGGGT 59.923 57.895 0.00 0.00 0.00 4.95
2898 7216 1.068474 CAACTTTGTAGTAGCGCGCT 58.932 50.000 38.01 38.01 33.17 5.92
2899 7217 0.788391 ACAACTTTGTAGTAGCGCGC 59.212 50.000 26.66 26.66 40.16 6.86
2900 7218 2.470140 CGAACAACTTTGTAGTAGCGCG 60.470 50.000 0.00 0.00 41.31 6.86
2901 7219 2.720891 GCGAACAACTTTGTAGTAGCGC 60.721 50.000 0.00 0.00 41.31 5.92
2902 7220 2.470140 CGCGAACAACTTTGTAGTAGCG 60.470 50.000 0.00 14.34 41.31 4.26
2903 7221 2.159881 CCGCGAACAACTTTGTAGTAGC 60.160 50.000 8.23 0.00 41.31 3.58
2904 7222 3.054878 ACCGCGAACAACTTTGTAGTAG 58.945 45.455 8.23 0.00 41.31 2.57
2905 7223 3.052036 GACCGCGAACAACTTTGTAGTA 58.948 45.455 8.23 0.00 41.31 1.82
2906 7224 1.862827 GACCGCGAACAACTTTGTAGT 59.137 47.619 8.23 0.00 41.31 2.73
2907 7225 1.862201 TGACCGCGAACAACTTTGTAG 59.138 47.619 8.23 0.00 41.31 2.74
2908 7226 1.937278 TGACCGCGAACAACTTTGTA 58.063 45.000 8.23 0.00 41.31 2.41
2962 7281 1.110442 CCTTGACACCCACTTTGCAA 58.890 50.000 0.00 0.00 0.00 4.08
2963 7282 0.754957 CCCTTGACACCCACTTTGCA 60.755 55.000 0.00 0.00 0.00 4.08
2964 7283 2.041153 CCCTTGACACCCACTTTGC 58.959 57.895 0.00 0.00 0.00 3.68
2965 7284 1.795170 CGCCCTTGACACCCACTTTG 61.795 60.000 0.00 0.00 0.00 2.77
2966 7285 1.528309 CGCCCTTGACACCCACTTT 60.528 57.895 0.00 0.00 0.00 2.66
2967 7286 2.113139 CGCCCTTGACACCCACTT 59.887 61.111 0.00 0.00 0.00 3.16
2968 7287 3.953775 CCGCCCTTGACACCCACT 61.954 66.667 0.00 0.00 0.00 4.00
2969 7288 3.948719 TCCGCCCTTGACACCCAC 61.949 66.667 0.00 0.00 0.00 4.61
2970 7289 3.948719 GTCCGCCCTTGACACCCA 61.949 66.667 0.00 0.00 32.91 4.51
2971 7290 3.948719 TGTCCGCCCTTGACACCC 61.949 66.667 0.00 0.00 37.80 4.61
2974 7293 3.220999 CTCGTGTCCGCCCTTGACA 62.221 63.158 0.00 0.00 40.28 3.58
2975 7294 2.432628 CTCGTGTCCGCCCTTGAC 60.433 66.667 0.00 0.00 0.00 3.18
2976 7295 2.035237 AAACTCGTGTCCGCCCTTGA 62.035 55.000 0.00 0.00 0.00 3.02
2977 7296 1.164041 AAAACTCGTGTCCGCCCTTG 61.164 55.000 0.00 0.00 0.00 3.61
2978 7297 0.393820 TAAAACTCGTGTCCGCCCTT 59.606 50.000 0.00 0.00 0.00 3.95
2979 7298 0.393820 TTAAAACTCGTGTCCGCCCT 59.606 50.000 0.00 0.00 0.00 5.19
2980 7299 1.445871 ATTAAAACTCGTGTCCGCCC 58.554 50.000 0.00 0.00 0.00 6.13
2981 7300 2.846693 CAATTAAAACTCGTGTCCGCC 58.153 47.619 0.00 0.00 0.00 6.13
2982 7301 2.239201 GCAATTAAAACTCGTGTCCGC 58.761 47.619 0.00 0.00 0.00 5.54
2983 7302 3.529634 TGCAATTAAAACTCGTGTCCG 57.470 42.857 0.00 0.00 0.00 4.79
2984 7303 4.602995 TGTTGCAATTAAAACTCGTGTCC 58.397 39.130 0.59 0.00 0.00 4.02
2985 7304 5.968848 TCTTGTTGCAATTAAAACTCGTGTC 59.031 36.000 0.59 0.00 0.00 3.67
2986 7305 5.885881 TCTTGTTGCAATTAAAACTCGTGT 58.114 33.333 0.59 0.00 0.00 4.49
2987 7306 5.971202 ACTCTTGTTGCAATTAAAACTCGTG 59.029 36.000 0.59 0.00 0.00 4.35
2988 7307 6.131544 ACTCTTGTTGCAATTAAAACTCGT 57.868 33.333 0.59 0.00 0.00 4.18
2989 7308 7.449934 AAACTCTTGTTGCAATTAAAACTCG 57.550 32.000 0.59 0.00 36.39 4.18
2994 7313 9.809096 TGTCATAAAACTCTTGTTGCAATTAAA 57.191 25.926 0.59 0.00 36.39 1.52
2995 7314 9.809096 TTGTCATAAAACTCTTGTTGCAATTAA 57.191 25.926 0.59 0.31 36.39 1.40
2996 7315 9.979578 ATTGTCATAAAACTCTTGTTGCAATTA 57.020 25.926 0.59 0.00 36.39 1.40
2997 7316 8.891671 ATTGTCATAAAACTCTTGTTGCAATT 57.108 26.923 0.59 0.00 36.39 2.32
2998 7317 7.326789 CGATTGTCATAAAACTCTTGTTGCAAT 59.673 33.333 0.59 0.00 36.39 3.56
3048 7916 3.112709 GCACTCCGGTCTTGCGAC 61.113 66.667 0.00 0.00 39.49 5.19
3085 7953 2.353357 TGGCTGGCTGATATTTGGAG 57.647 50.000 2.00 0.00 0.00 3.86
3115 7983 5.118729 TGTGAACATTATTATTCGGGGGT 57.881 39.130 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.