Multiple sequence alignment - TraesCS7B01G353200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G353200 chr7B 100.000 4193 0 0 1 4193 610738768 610734576 0.000000e+00 7744.0
1 TraesCS7B01G353200 chr7B 85.897 780 89 17 2686 3453 610482435 610483205 0.000000e+00 811.0
2 TraesCS7B01G353200 chr7B 84.300 707 79 13 875 1558 610478427 610479124 0.000000e+00 662.0
3 TraesCS7B01G353200 chr7B 94.470 217 11 1 1561 1777 610479160 610479375 2.420000e-87 333.0
4 TraesCS7B01G353200 chr7B 81.328 241 37 5 2 235 657533639 657533400 5.530000e-44 189.0
5 TraesCS7B01G353200 chr7B 78.571 154 24 7 1343 1495 504456379 504456524 4.460000e-15 93.5
6 TraesCS7B01G353200 chr7A 89.257 2020 137 36 360 2323 646586083 646584088 0.000000e+00 2455.0
7 TraesCS7B01G353200 chr7A 90.421 1044 75 10 2382 3418 646583992 646582967 0.000000e+00 1351.0
8 TraesCS7B01G353200 chr7A 84.551 958 104 33 868 1808 646477374 646478304 0.000000e+00 909.0
9 TraesCS7B01G353200 chr7A 86.391 654 63 15 2686 3325 646483111 646483752 0.000000e+00 691.0
10 TraesCS7B01G353200 chr7A 86.034 358 45 2 3841 4193 646582345 646581988 3.060000e-101 379.0
11 TraesCS7B01G353200 chr7A 83.832 334 45 6 3480 3806 646582722 646582391 4.070000e-80 309.0
12 TraesCS7B01G353200 chr7A 85.714 189 24 3 45 230 239188738 239188926 3.310000e-46 196.0
13 TraesCS7B01G353200 chr7A 87.143 70 7 1 1841 1908 646478992 646479061 1.250000e-10 78.7
14 TraesCS7B01G353200 chr7A 87.719 57 7 0 1165 1221 669727981 669728037 2.710000e-07 67.6
15 TraesCS7B01G353200 chr7A 82.857 70 11 1 1151 1220 152507297 152507365 1.260000e-05 62.1
16 TraesCS7B01G353200 chr7D 85.616 1891 202 31 2308 4144 561756721 561754847 0.000000e+00 1921.0
17 TraesCS7B01G353200 chr7D 86.678 1794 100 59 585 2307 561758657 561756932 0.000000e+00 1860.0
18 TraesCS7B01G353200 chr7D 85.475 957 84 33 875 1808 561699976 561700900 0.000000e+00 946.0
19 TraesCS7B01G353200 chr7D 85.627 654 70 14 2686 3325 561704442 561705085 0.000000e+00 665.0
20 TraesCS7B01G353200 chr7D 84.979 233 26 4 360 591 561759037 561758813 1.170000e-55 228.0
21 TraesCS7B01G353200 chr7D 82.648 219 38 0 2 220 32209617 32209835 1.190000e-45 195.0
22 TraesCS7B01G353200 chr7D 90.000 70 5 1 1841 1908 561701597 561701666 5.770000e-14 89.8
23 TraesCS7B01G353200 chr6A 84.615 208 28 4 29 232 574399179 574399386 1.980000e-48 204.0
24 TraesCS7B01G353200 chr2B 82.759 232 37 3 1 230 51662337 51662107 1.980000e-48 204.0
25 TraesCS7B01G353200 chr4D 82.203 236 37 4 1 232 400173775 400173541 9.200000e-47 198.0
26 TraesCS7B01G353200 chr3B 84.500 200 31 0 33 232 822820726 822820527 9.200000e-47 198.0
27 TraesCS7B01G353200 chr3B 80.804 224 40 3 1 222 26344622 26344844 5.570000e-39 172.0
28 TraesCS7B01G353200 chr3B 78.014 141 28 3 3562 3699 547128296 547128156 7.470000e-13 86.1
29 TraesCS7B01G353200 chr5B 81.277 235 40 4 5 236 67025035 67025268 1.990000e-43 187.0
30 TraesCS7B01G353200 chr2D 83.108 148 22 1 3564 3708 24934421 24934568 9.460000e-27 132.0
31 TraesCS7B01G353200 chr2D 89.091 55 6 0 1167 1221 13753325 13753271 7.520000e-08 69.4
32 TraesCS7B01G353200 chr6B 80.864 162 24 5 3620 3775 653697170 653697330 2.050000e-23 121.0
33 TraesCS7B01G353200 chr6B 81.609 87 13 1 3603 3686 514833409 514833323 7.520000e-08 69.4
34 TraesCS7B01G353200 chr3A 81.600 125 20 1 3597 3718 696617307 696617183 2.670000e-17 100.0
35 TraesCS7B01G353200 chr1B 82.051 117 21 0 1362 1478 389980435 389980551 2.670000e-17 100.0
36 TraesCS7B01G353200 chr1B 82.857 70 11 1 1151 1220 596248436 596248368 1.260000e-05 62.1
37 TraesCS7B01G353200 chr1D 79.310 145 27 1 3562 3703 482829577 482829721 9.590000e-17 99.0
38 TraesCS7B01G353200 chr1D 75.253 198 43 5 1307 1501 104543893 104544087 5.770000e-14 89.8
39 TraesCS7B01G353200 chr1A 75.532 188 40 5 1310 1494 107485367 107485183 2.080000e-13 87.9
40 TraesCS7B01G353200 chr4B 82.143 84 15 0 3562 3645 1738042 1737959 5.810000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G353200 chr7B 610734576 610738768 4192 True 7744.000000 7744 100.000000 1 4193 1 chr7B.!!$R1 4192
1 TraesCS7B01G353200 chr7B 610478427 610483205 4778 False 602.000000 811 88.222333 875 3453 3 chr7B.!!$F2 2578
2 TraesCS7B01G353200 chr7A 646581988 646586083 4095 True 1123.500000 2455 87.386000 360 4193 4 chr7A.!!$R1 3833
3 TraesCS7B01G353200 chr7A 646483111 646483752 641 False 691.000000 691 86.391000 2686 3325 1 chr7A.!!$F3 639
4 TraesCS7B01G353200 chr7A 646477374 646479061 1687 False 493.850000 909 85.847000 868 1908 2 chr7A.!!$F5 1040
5 TraesCS7B01G353200 chr7D 561754847 561759037 4190 True 1336.333333 1921 85.757667 360 4144 3 chr7D.!!$R1 3784
6 TraesCS7B01G353200 chr7D 561699976 561705085 5109 False 566.933333 946 87.034000 875 3325 3 chr7D.!!$F2 2450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.112412 AAGGTTTGTCCGGCTCCAAT 59.888 50.0 0.00 0.00 41.99 3.16 F
779 952 0.179012 GGCCTCTCTACCTACTCGCT 60.179 60.0 0.00 0.00 0.00 4.93 F
1558 1812 0.640262 CACAGCATACACGTACGCAG 59.360 55.0 16.72 11.09 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 4741 0.248054 CGTTTCAGCAAGCAACACGT 60.248 50.0 0.00 0.00 0.0 4.49 R
2109 5035 0.243636 CGGCAAGATTTGTGGTTCCC 59.756 55.0 0.00 0.00 0.0 3.97 R
3539 7230 0.612744 TCTGATGACGACAATGGCCA 59.387 50.0 8.56 8.56 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.427394 GTGCGCTGGTCCTATGAG 57.573 61.111 9.73 0.00 0.00 2.90
18 19 1.517832 GTGCGCTGGTCCTATGAGT 59.482 57.895 9.73 0.00 0.00 3.41
19 20 0.528684 GTGCGCTGGTCCTATGAGTC 60.529 60.000 9.73 0.00 0.00 3.36
20 21 1.068250 GCGCTGGTCCTATGAGTCC 59.932 63.158 0.00 0.00 0.00 3.85
21 22 1.395826 GCGCTGGTCCTATGAGTCCT 61.396 60.000 0.00 0.00 0.00 3.85
22 23 1.115467 CGCTGGTCCTATGAGTCCTT 58.885 55.000 0.00 0.00 0.00 3.36
23 24 2.307768 CGCTGGTCCTATGAGTCCTTA 58.692 52.381 0.00 0.00 0.00 2.69
24 25 2.294791 CGCTGGTCCTATGAGTCCTTAG 59.705 54.545 0.00 0.00 0.00 2.18
25 26 2.036604 GCTGGTCCTATGAGTCCTTAGC 59.963 54.545 0.00 0.00 0.00 3.09
26 27 3.300388 CTGGTCCTATGAGTCCTTAGCA 58.700 50.000 0.00 0.00 0.00 3.49
27 28 3.900601 CTGGTCCTATGAGTCCTTAGCAT 59.099 47.826 0.00 0.00 0.00 3.79
28 29 3.643320 TGGTCCTATGAGTCCTTAGCATG 59.357 47.826 0.00 0.00 0.00 4.06
29 30 3.898123 GGTCCTATGAGTCCTTAGCATGA 59.102 47.826 0.00 0.00 0.00 3.07
30 31 4.262249 GGTCCTATGAGTCCTTAGCATGAC 60.262 50.000 0.00 0.00 0.00 3.06
31 32 3.570125 TCCTATGAGTCCTTAGCATGACG 59.430 47.826 0.00 0.00 36.61 4.35
32 33 3.570125 CCTATGAGTCCTTAGCATGACGA 59.430 47.826 0.00 0.00 36.61 4.20
33 34 2.941453 TGAGTCCTTAGCATGACGAC 57.059 50.000 0.00 0.00 36.61 4.34
34 35 2.447443 TGAGTCCTTAGCATGACGACT 58.553 47.619 0.00 0.00 36.61 4.18
35 36 2.826128 TGAGTCCTTAGCATGACGACTT 59.174 45.455 0.00 0.00 36.61 3.01
36 37 3.258372 TGAGTCCTTAGCATGACGACTTT 59.742 43.478 0.00 0.00 36.61 2.66
37 38 3.851098 AGTCCTTAGCATGACGACTTTC 58.149 45.455 0.00 0.00 36.61 2.62
38 39 3.511934 AGTCCTTAGCATGACGACTTTCT 59.488 43.478 0.00 0.00 36.61 2.52
39 40 3.614616 GTCCTTAGCATGACGACTTTCTG 59.385 47.826 0.00 0.00 0.00 3.02
40 41 3.509967 TCCTTAGCATGACGACTTTCTGA 59.490 43.478 0.00 0.00 0.00 3.27
41 42 3.614616 CCTTAGCATGACGACTTTCTGAC 59.385 47.826 0.00 0.00 0.00 3.51
42 43 4.489810 CTTAGCATGACGACTTTCTGACT 58.510 43.478 0.00 0.00 0.00 3.41
43 44 2.681706 AGCATGACGACTTTCTGACTG 58.318 47.619 0.00 0.00 0.00 3.51
44 45 2.036475 AGCATGACGACTTTCTGACTGT 59.964 45.455 0.00 0.00 0.00 3.55
45 46 2.410053 GCATGACGACTTTCTGACTGTC 59.590 50.000 0.00 0.00 0.00 3.51
46 47 3.642705 CATGACGACTTTCTGACTGTCA 58.357 45.455 10.50 10.50 40.24 3.58
47 48 3.793797 TGACGACTTTCTGACTGTCAA 57.206 42.857 12.16 0.59 33.79 3.18
48 49 3.444916 TGACGACTTTCTGACTGTCAAC 58.555 45.455 12.16 0.00 33.79 3.18
49 50 3.130516 TGACGACTTTCTGACTGTCAACT 59.869 43.478 12.16 0.00 33.79 3.16
50 51 4.337274 TGACGACTTTCTGACTGTCAACTA 59.663 41.667 12.16 0.00 33.79 2.24
51 52 4.608951 ACGACTTTCTGACTGTCAACTAC 58.391 43.478 12.16 1.50 0.00 2.73
52 53 4.097437 ACGACTTTCTGACTGTCAACTACA 59.903 41.667 12.16 0.00 36.42 2.74
53 54 5.041287 CGACTTTCTGACTGTCAACTACAA 58.959 41.667 12.16 0.26 37.74 2.41
54 55 5.051641 CGACTTTCTGACTGTCAACTACAAC 60.052 44.000 12.16 1.11 37.74 3.32
55 56 5.730550 ACTTTCTGACTGTCAACTACAACA 58.269 37.500 12.16 0.00 37.74 3.33
56 57 6.170506 ACTTTCTGACTGTCAACTACAACAA 58.829 36.000 12.16 0.00 37.74 2.83
57 58 6.313905 ACTTTCTGACTGTCAACTACAACAAG 59.686 38.462 12.16 7.42 37.74 3.16
58 59 4.693283 TCTGACTGTCAACTACAACAAGG 58.307 43.478 12.16 0.00 37.74 3.61
59 60 4.161565 TCTGACTGTCAACTACAACAAGGT 59.838 41.667 12.16 0.00 37.74 3.50
60 61 4.839121 TGACTGTCAACTACAACAAGGTT 58.161 39.130 8.27 0.00 37.74 3.50
61 62 5.250200 TGACTGTCAACTACAACAAGGTTT 58.750 37.500 8.27 0.00 37.74 3.27
62 63 5.123186 TGACTGTCAACTACAACAAGGTTTG 59.877 40.000 8.27 0.00 37.74 2.93
64 65 5.123344 ACTGTCAACTACAACAAGGTTTGTC 59.877 40.000 0.00 0.00 44.59 3.18
65 66 4.396790 TGTCAACTACAACAAGGTTTGTCC 59.603 41.667 0.00 0.00 44.59 4.02
66 67 3.623960 TCAACTACAACAAGGTTTGTCCG 59.376 43.478 0.00 0.00 44.59 4.79
67 68 2.567985 ACTACAACAAGGTTTGTCCGG 58.432 47.619 0.00 0.00 44.59 5.14
68 69 1.265905 CTACAACAAGGTTTGTCCGGC 59.734 52.381 0.00 0.00 44.59 6.13
69 70 0.395173 ACAACAAGGTTTGTCCGGCT 60.395 50.000 0.00 0.00 44.59 5.52
70 71 0.310854 CAACAAGGTTTGTCCGGCTC 59.689 55.000 0.00 0.00 44.59 4.70
71 72 0.822121 AACAAGGTTTGTCCGGCTCC 60.822 55.000 0.00 0.00 44.59 4.70
72 73 1.228124 CAAGGTTTGTCCGGCTCCA 60.228 57.895 0.00 0.00 41.99 3.86
73 74 0.821711 CAAGGTTTGTCCGGCTCCAA 60.822 55.000 0.00 0.00 41.99 3.53
74 75 0.112412 AAGGTTTGTCCGGCTCCAAT 59.888 50.000 0.00 0.00 41.99 3.16
75 76 0.988832 AGGTTTGTCCGGCTCCAATA 59.011 50.000 0.00 0.00 41.99 1.90
76 77 1.353022 AGGTTTGTCCGGCTCCAATAA 59.647 47.619 0.00 0.00 41.99 1.40
77 78 1.743394 GGTTTGTCCGGCTCCAATAAG 59.257 52.381 0.00 0.00 0.00 1.73
78 79 1.743394 GTTTGTCCGGCTCCAATAAGG 59.257 52.381 0.00 0.00 39.47 2.69
79 80 0.254747 TTGTCCGGCTCCAATAAGGG 59.745 55.000 0.00 0.00 38.24 3.95
80 81 0.619255 TGTCCGGCTCCAATAAGGGA 60.619 55.000 0.00 0.00 38.24 4.20
86 87 3.655358 TCCAATAAGGGAGGGGCG 58.345 61.111 0.00 0.00 38.24 6.13
87 88 1.003704 TCCAATAAGGGAGGGGCGA 59.996 57.895 0.00 0.00 38.24 5.54
88 89 0.401395 TCCAATAAGGGAGGGGCGAT 60.401 55.000 0.00 0.00 38.24 4.58
89 90 0.250901 CCAATAAGGGAGGGGCGATG 60.251 60.000 0.00 0.00 0.00 3.84
90 91 0.764890 CAATAAGGGAGGGGCGATGA 59.235 55.000 0.00 0.00 0.00 2.92
91 92 0.765510 AATAAGGGAGGGGCGATGAC 59.234 55.000 0.00 0.00 0.00 3.06
92 93 1.472662 ATAAGGGAGGGGCGATGACG 61.473 60.000 0.00 0.00 42.93 4.35
117 118 4.112341 GCCTTCGGCTTGCTGCAG 62.112 66.667 10.11 10.11 46.69 4.41
118 119 2.670934 CCTTCGGCTTGCTGCAGT 60.671 61.111 16.64 0.00 45.15 4.40
119 120 2.559840 CTTCGGCTTGCTGCAGTG 59.440 61.111 16.64 7.33 45.15 3.66
120 121 2.203195 TTCGGCTTGCTGCAGTGT 60.203 55.556 16.64 0.00 45.15 3.55
121 122 1.789078 CTTCGGCTTGCTGCAGTGTT 61.789 55.000 16.64 0.00 45.15 3.32
122 123 1.383456 TTCGGCTTGCTGCAGTGTTT 61.383 50.000 16.64 0.00 45.15 2.83
123 124 1.659335 CGGCTTGCTGCAGTGTTTG 60.659 57.895 16.64 2.98 45.15 2.93
124 125 1.438814 GGCTTGCTGCAGTGTTTGT 59.561 52.632 16.64 0.00 45.15 2.83
125 126 0.667993 GGCTTGCTGCAGTGTTTGTA 59.332 50.000 16.64 0.00 45.15 2.41
126 127 1.270550 GGCTTGCTGCAGTGTTTGTAT 59.729 47.619 16.64 0.00 45.15 2.29
127 128 2.288395 GGCTTGCTGCAGTGTTTGTATT 60.288 45.455 16.64 0.00 45.15 1.89
128 129 2.982470 GCTTGCTGCAGTGTTTGTATTC 59.018 45.455 16.64 0.00 42.31 1.75
129 130 3.550639 GCTTGCTGCAGTGTTTGTATTCA 60.551 43.478 16.64 0.00 42.31 2.57
130 131 4.801891 CTTGCTGCAGTGTTTGTATTCAT 58.198 39.130 16.64 0.00 0.00 2.57
131 132 4.424061 TGCTGCAGTGTTTGTATTCATC 57.576 40.909 16.64 0.00 0.00 2.92
132 133 3.120234 TGCTGCAGTGTTTGTATTCATCG 60.120 43.478 16.64 0.00 0.00 3.84
133 134 3.419915 CTGCAGTGTTTGTATTCATCGC 58.580 45.455 5.25 0.00 0.00 4.58
134 135 3.073678 TGCAGTGTTTGTATTCATCGCT 58.926 40.909 0.00 0.00 0.00 4.93
135 136 4.249661 TGCAGTGTTTGTATTCATCGCTA 58.750 39.130 0.00 0.00 0.00 4.26
136 137 4.329801 TGCAGTGTTTGTATTCATCGCTAG 59.670 41.667 0.00 0.00 0.00 3.42
137 138 4.260375 GCAGTGTTTGTATTCATCGCTAGG 60.260 45.833 0.00 0.00 0.00 3.02
138 139 4.870426 CAGTGTTTGTATTCATCGCTAGGT 59.130 41.667 0.00 0.00 0.00 3.08
139 140 4.870426 AGTGTTTGTATTCATCGCTAGGTG 59.130 41.667 0.00 0.00 0.00 4.00
140 141 4.034048 GTGTTTGTATTCATCGCTAGGTGG 59.966 45.833 0.00 0.00 0.00 4.61
141 142 4.189231 GTTTGTATTCATCGCTAGGTGGT 58.811 43.478 0.00 0.00 0.00 4.16
142 143 3.728076 TGTATTCATCGCTAGGTGGTC 57.272 47.619 0.00 0.00 0.00 4.02
143 144 3.296854 TGTATTCATCGCTAGGTGGTCT 58.703 45.455 0.00 0.00 0.00 3.85
144 145 4.466827 TGTATTCATCGCTAGGTGGTCTA 58.533 43.478 0.00 0.00 0.00 2.59
145 146 4.277672 TGTATTCATCGCTAGGTGGTCTAC 59.722 45.833 0.00 0.00 0.00 2.59
146 147 1.306148 TCATCGCTAGGTGGTCTACG 58.694 55.000 0.00 0.00 0.00 3.51
147 148 0.311165 CATCGCTAGGTGGTCTACGG 59.689 60.000 0.00 0.00 0.00 4.02
148 149 0.182061 ATCGCTAGGTGGTCTACGGA 59.818 55.000 0.00 0.00 0.00 4.69
149 150 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
150 151 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
151 152 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
152 153 2.549563 CGCTAGGTGGTCTACGGATCTA 60.550 54.545 0.00 0.00 0.00 1.98
153 154 3.484407 GCTAGGTGGTCTACGGATCTAA 58.516 50.000 0.00 0.00 0.00 2.10
154 155 3.887716 GCTAGGTGGTCTACGGATCTAAA 59.112 47.826 0.00 0.00 0.00 1.85
155 156 4.523558 GCTAGGTGGTCTACGGATCTAAAT 59.476 45.833 0.00 0.00 0.00 1.40
156 157 4.939052 AGGTGGTCTACGGATCTAAATG 57.061 45.455 0.00 0.00 0.00 2.32
157 158 4.287552 AGGTGGTCTACGGATCTAAATGT 58.712 43.478 0.00 0.00 0.00 2.71
158 159 5.452255 AGGTGGTCTACGGATCTAAATGTA 58.548 41.667 0.00 0.00 0.00 2.29
159 160 5.895534 AGGTGGTCTACGGATCTAAATGTAA 59.104 40.000 0.00 0.00 0.00 2.41
160 161 6.381994 AGGTGGTCTACGGATCTAAATGTAAA 59.618 38.462 0.00 0.00 0.00 2.01
161 162 7.070821 AGGTGGTCTACGGATCTAAATGTAAAT 59.929 37.037 0.00 0.00 0.00 1.40
162 163 7.713942 GGTGGTCTACGGATCTAAATGTAAATT 59.286 37.037 0.00 0.00 0.00 1.82
163 164 9.106070 GTGGTCTACGGATCTAAATGTAAATTT 57.894 33.333 0.00 0.00 0.00 1.82
164 165 9.675464 TGGTCTACGGATCTAAATGTAAATTTT 57.325 29.630 0.00 0.00 0.00 1.82
191 192 9.877178 ACTTCTAATGTTCTTCATACTACCTTG 57.123 33.333 0.00 0.00 35.48 3.61
197 198 9.574516 AATGTTCTTCATACTACCTTGAAAGTT 57.425 29.630 0.00 0.00 35.48 2.66
199 200 9.706691 TGTTCTTCATACTACCTTGAAAGTTAG 57.293 33.333 0.00 0.00 31.85 2.34
200 201 9.708092 GTTCTTCATACTACCTTGAAAGTTAGT 57.292 33.333 5.71 5.71 37.84 2.24
201 202 9.706691 TTCTTCATACTACCTTGAAAGTTAGTG 57.293 33.333 9.75 0.00 35.41 2.74
202 203 9.085645 TCTTCATACTACCTTGAAAGTTAGTGA 57.914 33.333 9.75 0.00 35.41 3.41
203 204 9.706691 CTTCATACTACCTTGAAAGTTAGTGAA 57.293 33.333 9.75 5.84 35.41 3.18
210 211 9.239002 CTACCTTGAAAGTTAGTGAATAGATCG 57.761 37.037 0.00 0.00 0.00 3.69
211 212 7.837863 ACCTTGAAAGTTAGTGAATAGATCGA 58.162 34.615 0.00 0.00 0.00 3.59
212 213 8.311836 ACCTTGAAAGTTAGTGAATAGATCGAA 58.688 33.333 0.00 0.00 0.00 3.71
213 214 9.151471 CCTTGAAAGTTAGTGAATAGATCGAAA 57.849 33.333 0.00 0.00 0.00 3.46
215 216 9.706691 TTGAAAGTTAGTGAATAGATCGAAAGT 57.293 29.630 0.00 0.00 0.00 2.66
216 217 9.706691 TGAAAGTTAGTGAATAGATCGAAAGTT 57.293 29.630 0.00 0.00 0.00 2.66
220 221 9.152595 AGTTAGTGAATAGATCGAAAGTTTTCC 57.847 33.333 0.00 0.00 33.68 3.13
221 222 9.152595 GTTAGTGAATAGATCGAAAGTTTTCCT 57.847 33.333 0.00 0.00 33.68 3.36
224 225 9.720769 AGTGAATAGATCGAAAGTTTTCCTAAA 57.279 29.630 0.00 0.00 33.68 1.85
249 250 7.830099 AAAAGAACCTGACAAATGAGATTCT 57.170 32.000 0.00 0.00 0.00 2.40
250 251 7.830099 AAAGAACCTGACAAATGAGATTCTT 57.170 32.000 0.00 0.00 36.88 2.52
251 252 7.446001 AAGAACCTGACAAATGAGATTCTTC 57.554 36.000 0.00 0.00 31.24 2.87
252 253 5.942826 AGAACCTGACAAATGAGATTCTTCC 59.057 40.000 0.00 0.00 0.00 3.46
253 254 4.593956 ACCTGACAAATGAGATTCTTCCC 58.406 43.478 0.00 0.00 0.00 3.97
254 255 4.043310 ACCTGACAAATGAGATTCTTCCCA 59.957 41.667 0.00 0.00 0.00 4.37
255 256 4.639310 CCTGACAAATGAGATTCTTCCCAG 59.361 45.833 0.00 0.00 0.00 4.45
256 257 5.494724 CTGACAAATGAGATTCTTCCCAGA 58.505 41.667 0.00 0.00 0.00 3.86
257 258 5.879763 TGACAAATGAGATTCTTCCCAGAA 58.120 37.500 0.00 0.00 43.45 3.02
258 259 6.306199 TGACAAATGAGATTCTTCCCAGAAA 58.694 36.000 0.00 0.00 42.53 2.52
259 260 6.777091 TGACAAATGAGATTCTTCCCAGAAAA 59.223 34.615 0.00 0.00 42.53 2.29
260 261 7.287466 TGACAAATGAGATTCTTCCCAGAAAAA 59.713 33.333 0.00 0.00 42.53 1.94
261 262 8.198807 ACAAATGAGATTCTTCCCAGAAAAAT 57.801 30.769 0.00 0.00 42.53 1.82
262 263 9.312904 ACAAATGAGATTCTTCCCAGAAAAATA 57.687 29.630 0.00 0.00 42.53 1.40
263 264 9.578439 CAAATGAGATTCTTCCCAGAAAAATAC 57.422 33.333 0.00 0.00 42.53 1.89
264 265 9.539194 AAATGAGATTCTTCCCAGAAAAATACT 57.461 29.630 0.00 0.00 42.53 2.12
267 268 9.449719 TGAGATTCTTCCCAGAAAAATACTAAC 57.550 33.333 0.00 0.00 42.53 2.34
268 269 9.449719 GAGATTCTTCCCAGAAAAATACTAACA 57.550 33.333 0.00 0.00 42.53 2.41
269 270 9.807921 AGATTCTTCCCAGAAAAATACTAACAA 57.192 29.630 0.00 0.00 42.53 2.83
323 324 9.926158 ACAAATAATATTTCAAAGACACATGCA 57.074 25.926 0.00 0.00 0.00 3.96
326 327 9.793252 AATAATATTTCAAAGACACATGCAGAC 57.207 29.630 0.00 0.00 0.00 3.51
327 328 3.607422 TTTCAAAGACACATGCAGACG 57.393 42.857 0.00 0.00 0.00 4.18
328 329 2.524569 TCAAAGACACATGCAGACGA 57.475 45.000 0.00 0.00 0.00 4.20
329 330 3.044235 TCAAAGACACATGCAGACGAT 57.956 42.857 0.00 0.00 0.00 3.73
330 331 2.995939 TCAAAGACACATGCAGACGATC 59.004 45.455 0.00 0.00 0.00 3.69
331 332 2.998670 CAAAGACACATGCAGACGATCT 59.001 45.455 0.00 0.00 0.00 2.75
332 333 3.325293 AAGACACATGCAGACGATCTT 57.675 42.857 0.00 0.00 0.00 2.40
333 334 3.325293 AGACACATGCAGACGATCTTT 57.675 42.857 0.00 0.00 0.00 2.52
334 335 3.668447 AGACACATGCAGACGATCTTTT 58.332 40.909 0.00 0.00 0.00 2.27
335 336 4.820897 AGACACATGCAGACGATCTTTTA 58.179 39.130 0.00 0.00 0.00 1.52
336 337 5.237815 AGACACATGCAGACGATCTTTTAA 58.762 37.500 0.00 0.00 0.00 1.52
337 338 5.120830 AGACACATGCAGACGATCTTTTAAC 59.879 40.000 0.00 0.00 0.00 2.01
338 339 4.754618 ACACATGCAGACGATCTTTTAACA 59.245 37.500 0.00 0.00 0.00 2.41
339 340 5.412594 ACACATGCAGACGATCTTTTAACAT 59.587 36.000 0.00 0.00 0.00 2.71
340 341 6.072508 ACACATGCAGACGATCTTTTAACATT 60.073 34.615 0.00 0.00 0.00 2.71
341 342 7.119116 ACACATGCAGACGATCTTTTAACATTA 59.881 33.333 0.00 0.00 0.00 1.90
342 343 7.637519 CACATGCAGACGATCTTTTAACATTAG 59.362 37.037 0.00 0.00 0.00 1.73
343 344 7.549134 ACATGCAGACGATCTTTTAACATTAGA 59.451 33.333 0.00 0.00 0.00 2.10
344 345 7.899178 TGCAGACGATCTTTTAACATTAGAA 57.101 32.000 0.00 0.00 0.00 2.10
345 346 8.317891 TGCAGACGATCTTTTAACATTAGAAA 57.682 30.769 0.00 0.00 0.00 2.52
346 347 8.946085 TGCAGACGATCTTTTAACATTAGAAAT 58.054 29.630 0.00 0.00 0.00 2.17
359 360 9.658475 TTAACATTAGAAATATGATTTTCGCCG 57.342 29.630 0.00 0.00 39.93 6.46
360 361 7.259290 ACATTAGAAATATGATTTTCGCCGT 57.741 32.000 0.00 0.00 39.93 5.68
361 362 7.703328 ACATTAGAAATATGATTTTCGCCGTT 58.297 30.769 0.00 0.00 39.93 4.44
362 363 7.855904 ACATTAGAAATATGATTTTCGCCGTTC 59.144 33.333 0.00 0.00 39.93 3.95
363 364 5.169836 AGAAATATGATTTTCGCCGTTCC 57.830 39.130 0.00 0.00 39.93 3.62
364 365 4.638421 AGAAATATGATTTTCGCCGTTCCA 59.362 37.500 0.00 0.00 39.93 3.53
373 374 3.750639 TTCGCCGTTCCAATAACATTC 57.249 42.857 0.00 0.00 0.00 2.67
380 381 5.163663 GCCGTTCCAATAACATTCTTCATGA 60.164 40.000 0.00 0.00 36.24 3.07
400 401 8.603898 TCATGATAGTTTAGAGGGTTTCAGTA 57.396 34.615 0.00 0.00 0.00 2.74
417 418 7.601130 GGTTTCAGTAAAATAACCCAAATGGAC 59.399 37.037 0.00 0.00 35.17 4.02
420 421 4.707934 AGTAAAATAACCCAAATGGACCGG 59.292 41.667 0.00 0.00 37.39 5.28
441 442 3.251972 GGCGTACGAATAAGGTAGTAGCT 59.748 47.826 21.65 0.00 0.00 3.32
448 449 6.968250 ACGAATAAGGTAGTAGCTGTATGTC 58.032 40.000 1.88 0.00 0.00 3.06
449 450 6.016443 ACGAATAAGGTAGTAGCTGTATGTCC 60.016 42.308 1.88 0.00 0.00 4.02
460 461 7.272978 AGTAGCTGTATGTCCGTTAATCAAAT 58.727 34.615 0.00 0.00 0.00 2.32
461 462 6.363577 AGCTGTATGTCCGTTAATCAAATG 57.636 37.500 0.00 0.00 0.00 2.32
462 463 4.970003 GCTGTATGTCCGTTAATCAAATGC 59.030 41.667 0.00 0.00 0.00 3.56
463 464 5.150342 TGTATGTCCGTTAATCAAATGCG 57.850 39.130 0.00 0.00 0.00 4.73
557 558 5.393787 CCAGTAGTACCGCTGACTATTTTCA 60.394 44.000 13.84 0.00 34.87 2.69
564 565 2.289002 CGCTGACTATTTTCATGAGGGC 59.711 50.000 0.00 0.00 0.00 5.19
642 802 3.451894 CAAATGCCCGCTCCCCAC 61.452 66.667 0.00 0.00 0.00 4.61
779 952 0.179012 GGCCTCTCTACCTACTCGCT 60.179 60.000 0.00 0.00 0.00 4.93
783 956 0.875040 TCTCTACCTACTCGCTCGCG 60.875 60.000 0.00 0.00 41.35 5.87
941 1114 2.202987 CAGAGCATCCTCGTGCCC 60.203 66.667 0.00 0.00 46.19 5.36
945 1118 2.825836 GCATCCTCGTGCCCTTGG 60.826 66.667 0.00 0.00 39.18 3.61
1226 1424 2.170397 TCGTCAGGGTACGTACCTATGA 59.830 50.000 36.70 33.88 45.72 2.15
1295 1509 1.482182 TGTTCTGGGTCCTGATCGATG 59.518 52.381 0.54 0.00 0.00 3.84
1302 1516 1.071987 TCCTGATCGATGGGCATGC 59.928 57.895 9.90 9.90 0.00 4.06
1303 1517 1.072678 CCTGATCGATGGGCATGCT 59.927 57.895 18.92 0.00 0.00 3.79
1305 1519 1.228033 TGATCGATGGGCATGCTGG 60.228 57.895 18.92 0.00 0.00 4.85
1316 1530 3.259314 ATGCTGGTGGTGCAGGGA 61.259 61.111 0.00 0.00 44.04 4.20
1522 1736 1.281899 GTCATCGTAAGTGCTCTGCC 58.718 55.000 0.00 0.00 39.48 4.85
1526 1740 0.898326 TCGTAAGTGCTCTGCCTCCA 60.898 55.000 0.00 0.00 39.48 3.86
1528 1742 1.804372 CGTAAGTGCTCTGCCTCCATC 60.804 57.143 0.00 0.00 0.00 3.51
1558 1812 0.640262 CACAGCATACACGTACGCAG 59.360 55.000 16.72 11.09 0.00 5.18
1594 1848 2.161486 GCGACTGACCGATGCTGAC 61.161 63.158 0.00 0.00 0.00 3.51
1956 3973 4.017126 TGAGAGGAACTTGCTAGATTCGA 58.983 43.478 1.04 0.00 41.55 3.71
1963 3980 5.581085 GGAACTTGCTAGATTCGAGCTTTTA 59.419 40.000 17.88 0.00 40.76 1.52
1997 4015 2.713877 GCTATCTAGCTAGCCGGTAGT 58.286 52.381 16.35 0.00 45.62 2.73
1998 4016 3.871485 GCTATCTAGCTAGCCGGTAGTA 58.129 50.000 16.35 0.00 45.62 1.82
1999 4017 3.872771 GCTATCTAGCTAGCCGGTAGTAG 59.127 52.174 16.35 5.59 45.62 2.57
2109 5035 9.411801 GGCTCCAAGATAAAAAGAAAAGTAAAG 57.588 33.333 0.00 0.00 0.00 1.85
2156 5084 0.100325 TGCAGTTCCACAAAAGCACG 59.900 50.000 0.00 0.00 0.00 5.34
2190 5386 3.720949 AGCCGTTTAAAACTTTGGTCC 57.279 42.857 0.00 0.00 0.00 4.46
2236 5442 7.156876 GCAATGGGCTATGCATTAGTATTTA 57.843 36.000 3.54 0.00 42.12 1.40
2264 5475 3.131396 AGACTAGAAAGGTTGTTGCACG 58.869 45.455 0.00 0.00 0.00 5.34
2308 5684 6.017400 ACGCTAAGTTGCTAACTACTACAA 57.983 37.500 2.60 0.00 41.91 2.41
2340 5772 5.042463 TGGAACAATGACAGTAAGGACAA 57.958 39.130 0.00 0.00 31.92 3.18
2341 5773 5.063204 TGGAACAATGACAGTAAGGACAAG 58.937 41.667 0.00 0.00 31.92 3.16
2409 5841 2.743636 TGAACCGACAAGGACATCTC 57.256 50.000 0.00 0.00 45.00 2.75
2419 5852 3.244353 ACAAGGACATCTCCACTCAACTG 60.244 47.826 0.00 0.00 39.39 3.16
2539 5972 2.266554 CTACTTGCTACAGCTGTCTGC 58.733 52.381 25.56 26.85 44.10 4.26
2589 6022 4.074970 CAGCCTGTTTAGATTGACACCTT 58.925 43.478 0.00 0.00 0.00 3.50
2594 6028 7.770897 AGCCTGTTTAGATTGACACCTTATAAG 59.229 37.037 5.43 5.43 0.00 1.73
2624 6058 9.849166 ATTAAGTTCCATATGTTGTTTAAACGG 57.151 29.630 13.45 6.82 0.00 4.44
2636 6070 6.638873 TGTTGTTTAAACGGCACAATCTAATG 59.361 34.615 13.45 0.00 33.15 1.90
2637 6071 6.561737 TGTTTAAACGGCACAATCTAATGA 57.438 33.333 13.45 0.00 0.00 2.57
2703 6139 5.179368 TGCACTGTATTAGTTGAACTTGCTC 59.821 40.000 14.55 1.82 37.60 4.26
2726 6212 7.364522 TCAGTTCTGCACTTGTTATATTGTC 57.635 36.000 0.00 0.00 30.92 3.18
3021 6508 1.587933 GACTCTTCCAGTCCGACGCT 61.588 60.000 0.00 0.00 45.47 5.07
3037 6524 2.125952 CTGCGCTCATCACCGACA 60.126 61.111 9.73 0.00 0.00 4.35
3243 6739 6.711579 ACGACTGTGTTTGTATGTTTAGTTG 58.288 36.000 0.00 0.00 0.00 3.16
3245 6741 6.443934 ACTGTGTTTGTATGTTTAGTTGCA 57.556 33.333 0.00 0.00 0.00 4.08
3246 6742 7.038154 ACTGTGTTTGTATGTTTAGTTGCAT 57.962 32.000 0.00 0.00 0.00 3.96
3247 6743 7.488322 ACTGTGTTTGTATGTTTAGTTGCATT 58.512 30.769 0.00 0.00 0.00 3.56
3248 6744 7.978975 ACTGTGTTTGTATGTTTAGTTGCATTT 59.021 29.630 0.00 0.00 0.00 2.32
3249 6745 8.709386 TGTGTTTGTATGTTTAGTTGCATTTT 57.291 26.923 0.00 0.00 0.00 1.82
3317 6822 8.050930 TCTTTGTAAGGTGGTTTTCTAGTTCTT 58.949 33.333 0.00 0.00 0.00 2.52
3338 6843 6.820335 TCTTGTCCAGGTGATATATGTCTTG 58.180 40.000 0.89 0.00 0.00 3.02
3393 6898 3.805971 AGGAACACGTGTTACTAAAGCAC 59.194 43.478 38.55 20.53 46.78 4.40
3406 6911 7.327761 TGTTACTAAAGCACGAAAGAGTATGTC 59.672 37.037 0.00 0.00 0.00 3.06
3457 7125 3.882888 TGTCACTGGATTTTCAACCTGTC 59.117 43.478 0.00 0.00 36.48 3.51
3464 7132 7.013274 CACTGGATTTTCAACCTGTCTCTTTTA 59.987 37.037 0.00 0.00 36.48 1.52
3466 7134 8.477419 TGGATTTTCAACCTGTCTCTTTTAAT 57.523 30.769 0.00 0.00 0.00 1.40
3467 7135 8.359642 TGGATTTTCAACCTGTCTCTTTTAATG 58.640 33.333 0.00 0.00 0.00 1.90
3468 7136 7.329471 GGATTTTCAACCTGTCTCTTTTAATGC 59.671 37.037 0.00 0.00 0.00 3.56
3479 7170 9.727627 CTGTCTCTTTTAATGCAAGATTAATCC 57.272 33.333 11.92 0.00 29.78 3.01
3481 7172 7.857885 GTCTCTTTTAATGCAAGATTAATCCGG 59.142 37.037 11.92 0.00 29.78 5.14
3495 7186 3.900966 AATCCGGACTACAAAGTACCC 57.099 47.619 6.12 0.00 35.56 3.69
3539 7230 3.448301 TCAAGGTATACGAACCACCGAAT 59.552 43.478 8.62 0.00 42.40 3.34
3548 7239 4.016838 CCACCGAATGGCCATTGT 57.983 55.556 35.31 23.89 43.24 2.71
3551 7242 1.002624 ACCGAATGGCCATTGTCGT 60.003 52.632 35.31 22.80 39.70 4.34
3568 7259 2.854777 GTCGTCATCAGAACGGAATCTG 59.145 50.000 8.37 8.37 46.62 2.90
3579 7270 1.078143 GGAATCTGTGCCGGAGCTT 60.078 57.895 5.05 0.00 40.80 3.74
3583 7274 2.172483 ATCTGTGCCGGAGCTTCGTT 62.172 55.000 14.59 0.00 40.80 3.85
3585 7276 2.175184 CTGTGCCGGAGCTTCGTTTG 62.175 60.000 14.59 0.00 40.80 2.93
3589 7280 0.741221 GCCGGAGCTTCGTTTGATCT 60.741 55.000 14.59 0.00 35.50 2.75
3618 7309 0.472471 GGTGAACTTGAGGTGGGTCA 59.528 55.000 0.00 0.00 0.00 4.02
3633 7324 1.216710 GTCAGAGCCCGGAAGACTG 59.783 63.158 0.73 7.30 0.00 3.51
3650 7346 1.269831 ACTGACTCGAAGAAGCACCAC 60.270 52.381 0.00 0.00 34.09 4.16
3691 7387 2.434702 CCTGCGAGGACTAAAACCCTAT 59.565 50.000 0.00 0.00 37.67 2.57
3699 7395 7.339976 GCGAGGACTAAAACCCTATCTATCTAT 59.660 40.741 0.00 0.00 31.84 1.98
3711 7407 7.036498 ACCCTATCTATCTATTAGCCAGAGTCA 60.036 40.741 0.00 0.00 0.00 3.41
3733 7429 1.575447 GCACCAAGATCCCCTCCCTT 61.575 60.000 0.00 0.00 0.00 3.95
3738 7434 0.423544 AAGATCCCCTCCCTTCCACT 59.576 55.000 0.00 0.00 0.00 4.00
3806 7502 2.437651 GGGAGAAGATCAAGGGGAGAAG 59.562 54.545 0.00 0.00 0.00 2.85
3807 7503 3.379452 GGAGAAGATCAAGGGGAGAAGA 58.621 50.000 0.00 0.00 0.00 2.87
3812 7527 2.104170 GATCAAGGGGAGAAGACGACT 58.896 52.381 0.00 0.00 0.00 4.18
3813 7528 2.893215 TCAAGGGGAGAAGACGACTA 57.107 50.000 0.00 0.00 0.00 2.59
3821 7536 2.159212 GGAGAAGACGACTAGGGAAAGC 60.159 54.545 0.00 0.00 0.00 3.51
3823 7538 3.166679 AGAAGACGACTAGGGAAAGCTT 58.833 45.455 0.00 0.00 0.00 3.74
3825 7540 4.040584 AGAAGACGACTAGGGAAAGCTTTT 59.959 41.667 14.05 0.00 0.00 2.27
3866 7581 6.016276 CACAGGTGGATTTTTAACTTGTAGCT 60.016 38.462 0.00 0.00 32.99 3.32
3885 7600 0.465460 TGCTGGACAACCAACTCCAC 60.465 55.000 0.00 0.00 46.32 4.02
3891 7606 2.011222 GACAACCAACTCCACGAACAA 58.989 47.619 0.00 0.00 0.00 2.83
3896 7611 4.081322 ACCAACTCCACGAACAATACTT 57.919 40.909 0.00 0.00 0.00 2.24
3897 7612 5.217978 ACCAACTCCACGAACAATACTTA 57.782 39.130 0.00 0.00 0.00 2.24
3899 7614 6.056884 ACCAACTCCACGAACAATACTTAAA 58.943 36.000 0.00 0.00 0.00 1.52
3902 7617 7.411274 CAACTCCACGAACAATACTTAAACAA 58.589 34.615 0.00 0.00 0.00 2.83
3907 7622 8.242053 TCCACGAACAATACTTAAACAACAAAA 58.758 29.630 0.00 0.00 0.00 2.44
3939 7654 6.946340 TCATTACAGAGAAATGAACTAGCCA 58.054 36.000 0.00 0.00 39.70 4.75
3946 7661 8.515414 ACAGAGAAATGAACTAGCCAATTAAAC 58.485 33.333 0.00 0.00 0.00 2.01
3960 7675 7.368059 AGCCAATTAAACTGTTAAGCTTACAC 58.632 34.615 5.45 8.51 32.76 2.90
3967 7682 4.725490 ACTGTTAAGCTTACACCCATTGT 58.275 39.130 5.45 0.00 42.84 2.71
4081 7799 9.565090 CTCCTTTCAATCTCCATATTAATCACA 57.435 33.333 0.00 0.00 0.00 3.58
4085 7803 8.681486 TTCAATCTCCATATTAATCACACCAG 57.319 34.615 0.00 0.00 0.00 4.00
4086 7804 7.805163 TCAATCTCCATATTAATCACACCAGT 58.195 34.615 0.00 0.00 0.00 4.00
4090 7808 5.356426 TCCATATTAATCACACCAGTCACG 58.644 41.667 0.00 0.00 0.00 4.35
4095 7813 3.334583 AATCACACCAGTCACGCTATT 57.665 42.857 0.00 0.00 0.00 1.73
4097 7815 3.945981 TCACACCAGTCACGCTATTAA 57.054 42.857 0.00 0.00 0.00 1.40
4115 7833 9.737427 CGCTATTAATTACTCGAAGGATCATAT 57.263 33.333 0.00 0.00 0.00 1.78
4186 7906 2.565834 AGCCTAACCAGCTTTTCTCGTA 59.434 45.455 0.00 0.00 37.24 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.300388 TGCTAAGGACTCATAGGACCAG 58.700 50.000 0.00 0.00 0.00 4.00
6 7 3.398318 TGCTAAGGACTCATAGGACCA 57.602 47.619 0.00 0.00 0.00 4.02
7 8 3.898123 TCATGCTAAGGACTCATAGGACC 59.102 47.826 0.00 0.00 0.00 4.46
9 10 3.570125 CGTCATGCTAAGGACTCATAGGA 59.430 47.826 0.00 0.00 34.92 2.94
10 11 3.570125 TCGTCATGCTAAGGACTCATAGG 59.430 47.826 0.00 0.00 34.92 2.57
11 12 4.277174 AGTCGTCATGCTAAGGACTCATAG 59.723 45.833 3.19 0.00 37.30 2.23
12 13 4.207955 AGTCGTCATGCTAAGGACTCATA 58.792 43.478 3.19 0.00 37.30 2.15
13 14 3.027412 AGTCGTCATGCTAAGGACTCAT 58.973 45.455 3.19 0.00 37.30 2.90
14 15 2.447443 AGTCGTCATGCTAAGGACTCA 58.553 47.619 3.19 0.00 37.30 3.41
15 16 3.512033 AAGTCGTCATGCTAAGGACTC 57.488 47.619 8.24 0.00 40.06 3.36
16 17 3.511934 AGAAAGTCGTCATGCTAAGGACT 59.488 43.478 3.19 3.19 42.07 3.85
17 18 3.614616 CAGAAAGTCGTCATGCTAAGGAC 59.385 47.826 0.00 0.00 33.72 3.85
18 19 3.509967 TCAGAAAGTCGTCATGCTAAGGA 59.490 43.478 0.00 0.00 0.00 3.36
19 20 3.614616 GTCAGAAAGTCGTCATGCTAAGG 59.385 47.826 0.00 0.00 0.00 2.69
20 21 4.325741 CAGTCAGAAAGTCGTCATGCTAAG 59.674 45.833 0.00 0.00 0.00 2.18
21 22 4.237724 CAGTCAGAAAGTCGTCATGCTAA 58.762 43.478 0.00 0.00 0.00 3.09
22 23 3.255888 ACAGTCAGAAAGTCGTCATGCTA 59.744 43.478 0.00 0.00 0.00 3.49
23 24 2.036475 ACAGTCAGAAAGTCGTCATGCT 59.964 45.455 0.00 0.00 0.00 3.79
24 25 2.408050 ACAGTCAGAAAGTCGTCATGC 58.592 47.619 0.00 0.00 0.00 4.06
25 26 3.642705 TGACAGTCAGAAAGTCGTCATG 58.357 45.455 0.00 0.00 35.09 3.07
26 27 4.051922 GTTGACAGTCAGAAAGTCGTCAT 58.948 43.478 2.82 0.00 33.72 3.06
27 28 3.130516 AGTTGACAGTCAGAAAGTCGTCA 59.869 43.478 2.82 0.00 35.09 4.35
28 29 3.707793 AGTTGACAGTCAGAAAGTCGTC 58.292 45.455 2.82 0.00 35.09 4.20
29 30 3.802948 AGTTGACAGTCAGAAAGTCGT 57.197 42.857 2.82 0.00 35.09 4.34
30 31 4.607955 TGTAGTTGACAGTCAGAAAGTCG 58.392 43.478 2.82 0.00 35.09 4.18
31 32 5.810587 TGTTGTAGTTGACAGTCAGAAAGTC 59.189 40.000 2.82 0.00 39.88 3.01
32 33 5.730550 TGTTGTAGTTGACAGTCAGAAAGT 58.269 37.500 2.82 0.00 39.88 2.66
33 34 6.238211 CCTTGTTGTAGTTGACAGTCAGAAAG 60.238 42.308 2.82 1.23 39.88 2.62
34 35 5.584649 CCTTGTTGTAGTTGACAGTCAGAAA 59.415 40.000 2.82 0.00 39.88 2.52
35 36 5.116180 CCTTGTTGTAGTTGACAGTCAGAA 58.884 41.667 2.82 0.00 39.88 3.02
36 37 4.161565 ACCTTGTTGTAGTTGACAGTCAGA 59.838 41.667 2.82 0.00 39.88 3.27
37 38 4.442706 ACCTTGTTGTAGTTGACAGTCAG 58.557 43.478 2.82 0.00 39.88 3.51
38 39 4.481368 ACCTTGTTGTAGTTGACAGTCA 57.519 40.909 0.00 0.00 39.88 3.41
39 40 5.123344 ACAAACCTTGTTGTAGTTGACAGTC 59.877 40.000 0.00 0.00 42.22 3.51
40 41 5.007682 ACAAACCTTGTTGTAGTTGACAGT 58.992 37.500 0.00 0.00 42.22 3.55
41 42 5.448632 GGACAAACCTTGTTGTAGTTGACAG 60.449 44.000 0.00 0.00 45.52 3.51
42 43 4.396790 GGACAAACCTTGTTGTAGTTGACA 59.603 41.667 0.00 0.00 45.52 3.58
43 44 4.495184 CGGACAAACCTTGTTGTAGTTGAC 60.495 45.833 0.00 0.00 45.52 3.18
44 45 3.623960 CGGACAAACCTTGTTGTAGTTGA 59.376 43.478 0.00 0.00 45.52 3.18
45 46 3.242936 CCGGACAAACCTTGTTGTAGTTG 60.243 47.826 0.00 0.00 45.52 3.16
46 47 2.946990 CCGGACAAACCTTGTTGTAGTT 59.053 45.455 0.00 0.00 45.52 2.24
47 48 2.567985 CCGGACAAACCTTGTTGTAGT 58.432 47.619 0.00 0.00 45.52 2.73
48 49 1.265905 GCCGGACAAACCTTGTTGTAG 59.734 52.381 5.05 0.00 45.52 2.74
49 50 1.134037 AGCCGGACAAACCTTGTTGTA 60.134 47.619 5.05 0.00 45.52 2.41
50 51 0.395173 AGCCGGACAAACCTTGTTGT 60.395 50.000 5.05 0.00 45.52 3.32
51 52 0.310854 GAGCCGGACAAACCTTGTTG 59.689 55.000 5.05 0.00 45.52 3.33
52 53 0.822121 GGAGCCGGACAAACCTTGTT 60.822 55.000 5.05 0.00 45.52 2.83
54 55 0.821711 TTGGAGCCGGACAAACCTTG 60.822 55.000 5.05 0.00 36.31 3.61
55 56 0.112412 ATTGGAGCCGGACAAACCTT 59.888 50.000 5.05 0.00 36.31 3.50
56 57 0.988832 TATTGGAGCCGGACAAACCT 59.011 50.000 5.05 0.00 36.31 3.50
57 58 1.743394 CTTATTGGAGCCGGACAAACC 59.257 52.381 5.05 0.18 0.00 3.27
58 59 1.743394 CCTTATTGGAGCCGGACAAAC 59.257 52.381 5.05 0.00 38.35 2.93
59 60 1.340600 CCCTTATTGGAGCCGGACAAA 60.341 52.381 5.05 0.00 38.35 2.83
60 61 0.254747 CCCTTATTGGAGCCGGACAA 59.745 55.000 5.05 7.47 38.35 3.18
61 62 0.619255 TCCCTTATTGGAGCCGGACA 60.619 55.000 5.05 0.00 38.35 4.02
62 63 0.106894 CTCCCTTATTGGAGCCGGAC 59.893 60.000 5.05 0.00 45.13 4.79
63 64 2.528134 CTCCCTTATTGGAGCCGGA 58.472 57.895 5.05 0.00 45.13 5.14
69 70 0.401395 ATCGCCCCTCCCTTATTGGA 60.401 55.000 0.00 0.00 38.35 3.53
70 71 0.250901 CATCGCCCCTCCCTTATTGG 60.251 60.000 0.00 0.00 0.00 3.16
71 72 0.764890 TCATCGCCCCTCCCTTATTG 59.235 55.000 0.00 0.00 0.00 1.90
72 73 0.765510 GTCATCGCCCCTCCCTTATT 59.234 55.000 0.00 0.00 0.00 1.40
73 74 1.472662 CGTCATCGCCCCTCCCTTAT 61.473 60.000 0.00 0.00 0.00 1.73
74 75 2.131709 CGTCATCGCCCCTCCCTTA 61.132 63.158 0.00 0.00 0.00 2.69
75 76 3.470888 CGTCATCGCCCCTCCCTT 61.471 66.667 0.00 0.00 0.00 3.95
102 103 1.789078 AACACTGCAGCAAGCCGAAG 61.789 55.000 15.27 0.00 44.83 3.79
103 104 1.383456 AAACACTGCAGCAAGCCGAA 61.383 50.000 15.27 0.00 44.83 4.30
104 105 1.823470 AAACACTGCAGCAAGCCGA 60.823 52.632 15.27 0.00 44.83 5.54
105 106 1.659335 CAAACACTGCAGCAAGCCG 60.659 57.895 15.27 0.00 44.83 5.52
106 107 0.667993 TACAAACACTGCAGCAAGCC 59.332 50.000 15.27 0.00 44.83 4.35
107 108 2.712057 ATACAAACACTGCAGCAAGC 57.288 45.000 15.27 0.00 45.96 4.01
108 109 4.227512 TGAATACAAACACTGCAGCAAG 57.772 40.909 15.27 6.75 0.00 4.01
109 110 4.613394 CGATGAATACAAACACTGCAGCAA 60.613 41.667 15.27 0.00 0.00 3.91
110 111 3.120234 CGATGAATACAAACACTGCAGCA 60.120 43.478 15.27 0.00 0.00 4.41
111 112 3.419915 CGATGAATACAAACACTGCAGC 58.580 45.455 15.27 0.00 0.00 5.25
112 113 3.125829 AGCGATGAATACAAACACTGCAG 59.874 43.478 13.48 13.48 0.00 4.41
113 114 3.073678 AGCGATGAATACAAACACTGCA 58.926 40.909 0.00 0.00 0.00 4.41
114 115 3.747099 AGCGATGAATACAAACACTGC 57.253 42.857 0.00 0.00 0.00 4.40
115 116 4.870426 ACCTAGCGATGAATACAAACACTG 59.130 41.667 0.00 0.00 0.00 3.66
116 117 4.870426 CACCTAGCGATGAATACAAACACT 59.130 41.667 0.00 0.00 0.00 3.55
117 118 4.034048 CCACCTAGCGATGAATACAAACAC 59.966 45.833 0.00 0.00 0.00 3.32
118 119 4.188462 CCACCTAGCGATGAATACAAACA 58.812 43.478 0.00 0.00 0.00 2.83
119 120 4.189231 ACCACCTAGCGATGAATACAAAC 58.811 43.478 0.00 0.00 0.00 2.93
120 121 4.161565 AGACCACCTAGCGATGAATACAAA 59.838 41.667 0.00 0.00 0.00 2.83
121 122 3.704566 AGACCACCTAGCGATGAATACAA 59.295 43.478 0.00 0.00 0.00 2.41
122 123 3.296854 AGACCACCTAGCGATGAATACA 58.703 45.455 0.00 0.00 0.00 2.29
123 124 4.613167 CGTAGACCACCTAGCGATGAATAC 60.613 50.000 0.00 0.00 0.00 1.89
124 125 3.501062 CGTAGACCACCTAGCGATGAATA 59.499 47.826 0.00 0.00 0.00 1.75
125 126 2.293677 CGTAGACCACCTAGCGATGAAT 59.706 50.000 0.00 0.00 0.00 2.57
126 127 1.674441 CGTAGACCACCTAGCGATGAA 59.326 52.381 0.00 0.00 0.00 2.57
127 128 1.306148 CGTAGACCACCTAGCGATGA 58.694 55.000 0.00 0.00 0.00 2.92
128 129 0.311165 CCGTAGACCACCTAGCGATG 59.689 60.000 0.00 0.00 0.00 3.84
129 130 0.182061 TCCGTAGACCACCTAGCGAT 59.818 55.000 0.00 0.00 0.00 4.58
130 131 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
131 132 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
132 133 1.984066 AGATCCGTAGACCACCTAGC 58.016 55.000 0.00 0.00 0.00 3.42
133 134 5.535406 ACATTTAGATCCGTAGACCACCTAG 59.465 44.000 0.00 0.00 0.00 3.02
134 135 5.452255 ACATTTAGATCCGTAGACCACCTA 58.548 41.667 0.00 0.00 0.00 3.08
135 136 4.287552 ACATTTAGATCCGTAGACCACCT 58.712 43.478 0.00 0.00 0.00 4.00
136 137 4.667519 ACATTTAGATCCGTAGACCACC 57.332 45.455 0.00 0.00 0.00 4.61
137 138 8.658499 AATTTACATTTAGATCCGTAGACCAC 57.342 34.615 0.00 0.00 0.00 4.16
138 139 9.675464 AAAATTTACATTTAGATCCGTAGACCA 57.325 29.630 0.00 0.00 31.89 4.02
165 166 9.877178 CAAGGTAGTATGAAGAACATTAGAAGT 57.123 33.333 0.00 0.00 40.07 3.01
171 172 9.574516 AACTTTCAAGGTAGTATGAAGAACATT 57.425 29.630 0.00 0.00 40.07 2.71
173 174 9.706691 CTAACTTTCAAGGTAGTATGAAGAACA 57.293 33.333 3.74 0.00 40.62 3.18
185 186 8.963725 TCGATCTATTCACTAACTTTCAAGGTA 58.036 33.333 0.00 0.00 0.00 3.08
186 187 7.837863 TCGATCTATTCACTAACTTTCAAGGT 58.162 34.615 0.00 0.00 0.00 3.50
187 188 8.703604 TTCGATCTATTCACTAACTTTCAAGG 57.296 34.615 0.00 0.00 0.00 3.61
189 190 9.706691 ACTTTCGATCTATTCACTAACTTTCAA 57.293 29.630 0.00 0.00 0.00 2.69
190 191 9.706691 AACTTTCGATCTATTCACTAACTTTCA 57.293 29.630 0.00 0.00 0.00 2.69
194 195 9.152595 GGAAAACTTTCGATCTATTCACTAACT 57.847 33.333 0.00 0.00 38.06 2.24
195 196 9.152595 AGGAAAACTTTCGATCTATTCACTAAC 57.847 33.333 0.00 0.00 38.06 2.34
198 199 9.720769 TTTAGGAAAACTTTCGATCTATTCACT 57.279 29.630 0.00 0.00 38.06 3.41
224 225 8.242729 AGAATCTCATTTGTCAGGTTCTTTTT 57.757 30.769 0.00 0.00 36.83 1.94
225 226 7.830099 AGAATCTCATTTGTCAGGTTCTTTT 57.170 32.000 0.00 0.00 36.83 2.27
226 227 7.040132 GGAAGAATCTCATTTGTCAGGTTCTTT 60.040 37.037 8.26 0.00 45.91 2.52
228 229 5.942826 GGAAGAATCTCATTTGTCAGGTTCT 59.057 40.000 0.00 0.00 41.09 3.01
229 230 5.124617 GGGAAGAATCTCATTTGTCAGGTTC 59.875 44.000 0.00 0.00 30.86 3.62
230 231 5.012893 GGGAAGAATCTCATTTGTCAGGTT 58.987 41.667 0.00 0.00 0.00 3.50
231 232 4.043310 TGGGAAGAATCTCATTTGTCAGGT 59.957 41.667 0.00 0.00 28.56 4.00
232 233 4.592942 TGGGAAGAATCTCATTTGTCAGG 58.407 43.478 0.00 0.00 28.56 3.86
233 234 5.494724 TCTGGGAAGAATCTCATTTGTCAG 58.505 41.667 0.00 0.00 34.90 3.51
234 235 5.503634 TCTGGGAAGAATCTCATTTGTCA 57.496 39.130 0.00 0.00 34.90 3.58
235 236 6.824305 TTTCTGGGAAGAATCTCATTTGTC 57.176 37.500 0.00 0.00 34.90 3.18
236 237 7.601705 TTTTTCTGGGAAGAATCTCATTTGT 57.398 32.000 0.00 0.00 34.90 2.83
237 238 9.578439 GTATTTTTCTGGGAAGAATCTCATTTG 57.422 33.333 0.46 0.00 34.90 2.32
238 239 9.539194 AGTATTTTTCTGGGAAGAATCTCATTT 57.461 29.630 0.46 0.00 34.90 2.32
241 242 9.449719 GTTAGTATTTTTCTGGGAAGAATCTCA 57.550 33.333 0.46 0.00 34.05 3.27
242 243 9.449719 TGTTAGTATTTTTCTGGGAAGAATCTC 57.550 33.333 0.46 0.00 0.00 2.75
243 244 9.807921 TTGTTAGTATTTTTCTGGGAAGAATCT 57.192 29.630 0.46 0.00 0.00 2.40
297 298 9.926158 TGCATGTGTCTTTGAAATATTATTTGT 57.074 25.926 6.38 0.00 0.00 2.83
300 301 9.793252 GTCTGCATGTGTCTTTGAAATATTATT 57.207 29.630 0.00 0.00 0.00 1.40
301 302 8.124823 CGTCTGCATGTGTCTTTGAAATATTAT 58.875 33.333 0.00 0.00 0.00 1.28
302 303 7.333174 TCGTCTGCATGTGTCTTTGAAATATTA 59.667 33.333 0.00 0.00 0.00 0.98
303 304 6.149308 TCGTCTGCATGTGTCTTTGAAATATT 59.851 34.615 0.00 0.00 0.00 1.28
304 305 5.643348 TCGTCTGCATGTGTCTTTGAAATAT 59.357 36.000 0.00 0.00 0.00 1.28
305 306 4.994217 TCGTCTGCATGTGTCTTTGAAATA 59.006 37.500 0.00 0.00 0.00 1.40
306 307 3.814842 TCGTCTGCATGTGTCTTTGAAAT 59.185 39.130 0.00 0.00 0.00 2.17
307 308 3.202097 TCGTCTGCATGTGTCTTTGAAA 58.798 40.909 0.00 0.00 0.00 2.69
308 309 2.832563 TCGTCTGCATGTGTCTTTGAA 58.167 42.857 0.00 0.00 0.00 2.69
309 310 2.524569 TCGTCTGCATGTGTCTTTGA 57.475 45.000 0.00 0.00 0.00 2.69
310 311 2.998670 AGATCGTCTGCATGTGTCTTTG 59.001 45.455 0.00 0.00 0.00 2.77
311 312 3.325293 AGATCGTCTGCATGTGTCTTT 57.675 42.857 0.00 0.00 0.00 2.52
312 313 3.325293 AAGATCGTCTGCATGTGTCTT 57.675 42.857 0.00 0.00 0.00 3.01
313 314 3.325293 AAAGATCGTCTGCATGTGTCT 57.675 42.857 0.00 0.00 0.00 3.41
314 315 5.107104 TGTTAAAAGATCGTCTGCATGTGTC 60.107 40.000 0.00 0.00 0.00 3.67
315 316 4.754618 TGTTAAAAGATCGTCTGCATGTGT 59.245 37.500 0.00 0.00 0.00 3.72
316 317 5.281693 TGTTAAAAGATCGTCTGCATGTG 57.718 39.130 0.00 0.00 0.00 3.21
317 318 6.500684 AATGTTAAAAGATCGTCTGCATGT 57.499 33.333 0.00 0.00 0.00 3.21
318 319 7.909267 TCTAATGTTAAAAGATCGTCTGCATG 58.091 34.615 0.00 0.00 0.00 4.06
319 320 8.492673 TTCTAATGTTAAAAGATCGTCTGCAT 57.507 30.769 0.00 0.00 0.00 3.96
320 321 7.899178 TTCTAATGTTAAAAGATCGTCTGCA 57.101 32.000 0.00 0.00 0.00 4.41
333 334 9.658475 CGGCGAAAATCATATTTCTAATGTTAA 57.342 29.630 0.00 0.00 37.20 2.01
334 335 8.832521 ACGGCGAAAATCATATTTCTAATGTTA 58.167 29.630 16.62 0.00 37.20 2.41
335 336 7.703328 ACGGCGAAAATCATATTTCTAATGTT 58.297 30.769 16.62 0.00 37.20 2.71
336 337 7.259290 ACGGCGAAAATCATATTTCTAATGT 57.741 32.000 16.62 0.00 37.20 2.71
337 338 7.323656 GGAACGGCGAAAATCATATTTCTAATG 59.676 37.037 16.62 0.00 37.20 1.90
338 339 7.012894 TGGAACGGCGAAAATCATATTTCTAAT 59.987 33.333 16.62 0.00 37.20 1.73
339 340 6.316640 TGGAACGGCGAAAATCATATTTCTAA 59.683 34.615 16.62 0.00 37.20 2.10
340 341 5.818336 TGGAACGGCGAAAATCATATTTCTA 59.182 36.000 16.62 0.00 37.20 2.10
341 342 4.638421 TGGAACGGCGAAAATCATATTTCT 59.362 37.500 16.62 0.00 37.20 2.52
342 343 4.915704 TGGAACGGCGAAAATCATATTTC 58.084 39.130 16.62 2.05 36.24 2.17
343 344 4.974368 TGGAACGGCGAAAATCATATTT 57.026 36.364 16.62 0.00 0.00 1.40
344 345 4.974368 TTGGAACGGCGAAAATCATATT 57.026 36.364 16.62 0.00 0.00 1.28
345 346 6.038825 TGTTATTGGAACGGCGAAAATCATAT 59.961 34.615 16.62 6.09 0.00 1.78
346 347 5.354513 TGTTATTGGAACGGCGAAAATCATA 59.645 36.000 16.62 0.00 0.00 2.15
347 348 4.156922 TGTTATTGGAACGGCGAAAATCAT 59.843 37.500 16.62 0.44 0.00 2.45
348 349 3.502595 TGTTATTGGAACGGCGAAAATCA 59.497 39.130 16.62 1.21 0.00 2.57
349 350 4.086199 TGTTATTGGAACGGCGAAAATC 57.914 40.909 16.62 6.04 0.00 2.17
350 351 4.712122 ATGTTATTGGAACGGCGAAAAT 57.288 36.364 16.62 9.89 0.00 1.82
351 352 4.216687 AGAATGTTATTGGAACGGCGAAAA 59.783 37.500 16.62 2.01 0.00 2.29
352 353 3.754323 AGAATGTTATTGGAACGGCGAAA 59.246 39.130 16.62 2.42 0.00 3.46
353 354 3.340034 AGAATGTTATTGGAACGGCGAA 58.660 40.909 16.62 0.00 0.00 4.70
354 355 2.980568 AGAATGTTATTGGAACGGCGA 58.019 42.857 16.62 0.00 0.00 5.54
355 356 3.126171 TGAAGAATGTTATTGGAACGGCG 59.874 43.478 4.80 4.80 0.00 6.46
356 357 4.695217 TGAAGAATGTTATTGGAACGGC 57.305 40.909 0.00 0.00 0.00 5.68
357 358 6.435430 TCATGAAGAATGTTATTGGAACGG 57.565 37.500 0.00 0.00 37.56 4.44
358 359 8.830580 ACTATCATGAAGAATGTTATTGGAACG 58.169 33.333 0.00 0.00 37.56 3.95
373 374 8.043710 ACTGAAACCCTCTAAACTATCATGAAG 58.956 37.037 0.00 1.33 0.00 3.02
400 401 2.235155 GCCGGTCCATTTGGGTTATTTT 59.765 45.455 1.90 0.00 38.11 1.82
417 418 1.334869 ACTACCTTATTCGTACGCCGG 59.665 52.381 11.24 0.00 37.11 6.13
420 421 4.217497 CAGCTACTACCTTATTCGTACGC 58.783 47.826 11.24 0.00 0.00 4.42
433 434 6.732154 TGATTAACGGACATACAGCTACTAC 58.268 40.000 0.00 0.00 0.00 2.73
441 442 4.632251 ACGCATTTGATTAACGGACATACA 59.368 37.500 0.00 0.00 0.00 2.29
448 449 3.644805 ACGTACGCATTTGATTAACGG 57.355 42.857 16.72 0.00 33.44 4.44
449 450 4.180902 CGTACGTACGCATTTGATTAACG 58.819 43.478 32.36 9.20 43.14 3.18
463 464 3.473367 CAGGCGATACATACGTACGTAC 58.527 50.000 28.99 15.90 33.01 3.67
474 475 1.220749 GTCAAGGCCAGGCGATACA 59.779 57.895 5.01 0.00 0.00 2.29
614 774 1.484038 GGGCATTTGCTTCCACCATA 58.516 50.000 2.12 0.00 41.70 2.74
615 775 1.606885 CGGGCATTTGCTTCCACCAT 61.607 55.000 2.12 0.00 41.70 3.55
642 802 2.667318 CGGTTGCTACCACACAGCG 61.667 63.158 17.63 0.00 45.31 5.18
941 1114 2.819595 CGGGCGATGGTGTCCAAG 60.820 66.667 0.00 0.00 36.95 3.61
1013 1204 1.228245 AGCATCGCCAACACCAACT 60.228 52.632 0.00 0.00 0.00 3.16
1077 1271 2.440796 TCGTAGTACCCCTGCCGG 60.441 66.667 0.00 0.00 0.00 6.13
1226 1424 2.840974 CGTGCACGGAAAGGAAGAT 58.159 52.632 31.15 0.00 35.37 2.40
1522 1736 2.187946 GCGTGGGTGGAGATGGAG 59.812 66.667 0.00 0.00 0.00 3.86
1526 1740 2.665000 CTGTGCGTGGGTGGAGAT 59.335 61.111 0.00 0.00 0.00 2.75
1528 1742 2.520465 TATGCTGTGCGTGGGTGGAG 62.520 60.000 0.00 0.00 0.00 3.86
1956 3973 0.740737 GCCGCATGGACATAAAAGCT 59.259 50.000 0.00 0.00 37.49 3.74
1963 3980 3.182590 ATAGCCGCCGCATGGACAT 62.183 57.895 0.00 0.00 37.49 3.06
1997 4015 3.278668 AAGTAGAGCGTCTGGTAGCTA 57.721 47.619 0.00 0.00 44.69 3.32
1999 4017 2.094649 ACAAAGTAGAGCGTCTGGTAGC 60.095 50.000 0.00 0.00 0.00 3.58
2008 4026 3.442977 AGTGGGTAGTACAAAGTAGAGCG 59.557 47.826 2.06 0.00 0.00 5.03
2060 4741 0.248054 CGTTTCAGCAAGCAACACGT 60.248 50.000 0.00 0.00 0.00 4.49
2061 4742 0.929824 CCGTTTCAGCAAGCAACACG 60.930 55.000 0.00 0.00 0.00 4.49
2109 5035 0.243636 CGGCAAGATTTGTGGTTCCC 59.756 55.000 0.00 0.00 0.00 3.97
2156 5084 6.826893 TTAAACGGCTAACATATACGGTTC 57.173 37.500 0.00 0.00 35.86 3.62
2190 5386 7.457024 TGCTATTGGGAATGATATCAACATG 57.543 36.000 9.99 0.00 0.00 3.21
2236 5442 7.100409 GCAACAACCTTTCTAGTCTCTAGAAT 58.900 38.462 16.52 0.00 34.02 2.40
2264 5475 2.309528 TCAACATCTATGACCGTGCC 57.690 50.000 0.00 0.00 0.00 5.01
2308 5684 7.944729 ACTGTCATTGTTCCAAGCTAATATT 57.055 32.000 0.00 0.00 0.00 1.28
2376 5808 5.165676 TGTCGGTTCATGTGTACTTGTATC 58.834 41.667 0.00 0.00 0.00 2.24
2432 5865 9.687210 GACCTAAGTTGGTAATTAAAAACTTGG 57.313 33.333 24.05 21.99 41.60 3.61
2509 5942 5.048643 AGCTGTAGCAAGTAGGTATACATCG 60.049 44.000 5.01 0.00 45.16 3.84
2610 6044 5.195001 AGATTGTGCCGTTTAAACAACAT 57.805 34.783 18.07 8.89 36.69 2.71
2703 6139 7.369803 AGACAATATAACAAGTGCAGAACTG 57.630 36.000 0.00 0.00 39.81 3.16
2726 6212 1.004918 GTCGGGTGAGGTGGTGAAG 60.005 63.158 0.00 0.00 0.00 3.02
3021 6508 2.432456 GTGTCGGTGATGAGCGCA 60.432 61.111 11.47 0.00 42.92 6.09
3317 6822 6.560003 AACAAGACATATATCACCTGGACA 57.440 37.500 0.00 0.00 0.00 4.02
3385 6890 5.633601 TGTGACATACTCTTTCGTGCTTTAG 59.366 40.000 0.00 0.00 0.00 1.85
3393 6898 9.899226 TCTATATCATTGTGACATACTCTTTCG 57.101 33.333 0.00 0.00 0.00 3.46
3423 6928 6.446781 AATCCAGTGACATCAACATCATTC 57.553 37.500 0.00 0.00 0.00 2.67
3457 7125 7.857885 GTCCGGATTAATCTTGCATTAAAAGAG 59.142 37.037 7.81 0.00 37.10 2.85
3464 7132 5.680619 TGTAGTCCGGATTAATCTTGCATT 58.319 37.500 7.81 0.89 0.00 3.56
3466 7134 4.746535 TGTAGTCCGGATTAATCTTGCA 57.253 40.909 7.81 0.00 0.00 4.08
3467 7135 5.585047 ACTTTGTAGTCCGGATTAATCTTGC 59.415 40.000 7.81 0.00 0.00 4.01
3468 7136 7.224167 GGTACTTTGTAGTCCGGATTAATCTTG 59.776 40.741 7.81 8.09 35.78 3.02
3479 7170 3.069289 GTTTGGGGTACTTTGTAGTCCG 58.931 50.000 0.00 0.00 35.78 4.79
3481 7172 7.933215 ATTATGTTTGGGGTACTTTGTAGTC 57.067 36.000 0.00 0.00 35.78 2.59
3509 7200 7.281549 GGTGGTTCGTATACCTTGATGTATTTT 59.718 37.037 0.00 0.00 39.04 1.82
3512 7203 5.508489 CGGTGGTTCGTATACCTTGATGTAT 60.508 44.000 0.00 0.00 39.04 2.29
3539 7230 0.612744 TCTGATGACGACAATGGCCA 59.387 50.000 8.56 8.56 0.00 5.36
3541 7232 1.061131 CGTTCTGATGACGACAATGGC 59.939 52.381 0.00 0.00 0.00 4.40
3548 7239 2.492088 ACAGATTCCGTTCTGATGACGA 59.508 45.455 12.54 0.00 44.88 4.20
3551 7242 2.621338 GCACAGATTCCGTTCTGATGA 58.379 47.619 12.54 0.00 44.88 2.92
3568 7259 1.298859 ATCAAACGAAGCTCCGGCAC 61.299 55.000 0.00 0.00 41.70 5.01
3579 7270 0.109458 CGTCGGGACAGATCAAACGA 60.109 55.000 0.00 0.00 31.13 3.85
3618 7309 0.968393 GAGTCAGTCTTCCGGGCTCT 60.968 60.000 0.00 0.00 0.00 4.09
3633 7324 0.033504 TGGTGGTGCTTCTTCGAGTC 59.966 55.000 0.00 0.00 0.00 3.36
3650 7346 2.584418 CAGCGCTCGGACAGATGG 60.584 66.667 7.13 0.00 0.00 3.51
3691 7387 5.478679 GCCTTGACTCTGGCTAATAGATAGA 59.521 44.000 0.00 0.00 45.26 1.98
3711 7407 1.575447 GGAGGGGATCTTGGTGCCTT 61.575 60.000 0.00 0.00 0.00 4.35
3733 7429 3.138798 GCTCCGGCGACTAGTGGA 61.139 66.667 9.30 4.30 0.00 4.02
3753 7449 0.396695 ATTCGTCTCCCTTCCGCCTA 60.397 55.000 0.00 0.00 0.00 3.93
3785 7481 2.182516 TCTCCCCTTGATCTTCTCCC 57.817 55.000 0.00 0.00 0.00 4.30
3845 7560 5.048013 AGCAGCTACAAGTTAAAAATCCACC 60.048 40.000 0.00 0.00 0.00 4.61
3846 7561 5.858581 CAGCAGCTACAAGTTAAAAATCCAC 59.141 40.000 0.00 0.00 0.00 4.02
3859 7574 0.472044 TGGTTGTCCAGCAGCTACAA 59.528 50.000 6.65 6.65 39.03 2.41
3864 7579 1.518903 GGAGTTGGTTGTCCAGCAGC 61.519 60.000 4.18 0.00 45.47 5.25
3866 7581 0.465460 GTGGAGTTGGTTGTCCAGCA 60.465 55.000 4.18 0.00 43.69 4.41
3899 7614 9.950680 CTCTGTAATGATGTTTAGTTTTGTTGT 57.049 29.630 0.00 0.00 0.00 3.32
3915 7630 6.946340 TGGCTAGTTCATTTCTCTGTAATGA 58.054 36.000 0.00 0.00 39.54 2.57
3923 7638 8.515414 ACAGTTTAATTGGCTAGTTCATTTCTC 58.485 33.333 0.00 0.00 0.00 2.87
3933 7648 8.726988 TGTAAGCTTAACAGTTTAATTGGCTAG 58.273 33.333 7.99 0.00 30.15 3.42
3939 7654 7.826918 TGGGTGTAAGCTTAACAGTTTAATT 57.173 32.000 7.99 0.00 28.40 1.40
3946 7661 4.082787 CCACAATGGGTGTAAGCTTAACAG 60.083 45.833 7.99 0.00 46.44 3.16
3971 7686 3.119280 CCTGTTAAAAATAAGTGGCCGGG 60.119 47.826 2.18 0.00 0.00 5.73
3973 7688 5.379732 TTCCTGTTAAAAATAAGTGGCCG 57.620 39.130 0.00 0.00 0.00 6.13
3975 7690 7.658261 AGAGTTTCCTGTTAAAAATAAGTGGC 58.342 34.615 0.00 0.00 0.00 5.01
4044 7759 1.354101 TGAAAGGAGCGGGAGGTAAA 58.646 50.000 0.00 0.00 43.00 2.01
4045 7760 1.354101 TTGAAAGGAGCGGGAGGTAA 58.646 50.000 0.00 0.00 43.00 2.85
4046 7761 1.485066 GATTGAAAGGAGCGGGAGGTA 59.515 52.381 0.00 0.00 43.00 3.08
4081 7799 5.066893 TCGAGTAATTAATAGCGTGACTGGT 59.933 40.000 0.00 0.00 0.00 4.00
4085 7803 6.204359 TCCTTCGAGTAATTAATAGCGTGAC 58.796 40.000 0.00 0.00 0.00 3.67
4086 7804 6.381481 TCCTTCGAGTAATTAATAGCGTGA 57.619 37.500 0.00 0.00 0.00 4.35
4095 7813 8.311836 GGGAACATATGATCCTTCGAGTAATTA 58.688 37.037 25.99 0.00 37.20 1.40
4097 7815 6.270000 TGGGAACATATGATCCTTCGAGTAAT 59.730 38.462 25.99 0.00 37.20 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.