AutoCloner

Multiple sequence alignment - TraesCS7B01G352000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G352000	chr7B	100.000	3158	0	0	1	3158	608479070	608475913	0.000000e+00	5832.0
1	TraesCS7B01G352000	chr7A	91.076	2667	151	19	539	3156	644858351	644855723	0.000000e+00	3526.0
2	TraesCS7B01G352000	chr7A	94.928	138	3	1	1	134	645018024	645017887	2.470000e-51	213.0
3	TraesCS7B01G352000	chr7A	96.078	51	2	0	1	51	644861606	644861556	2.020000e-12	84.2
4	TraesCS7B01G352000	chr7D	90.602	2575	143	32	636	3158	560713549	560711022	0.000000e+00	3323.0
5	TraesCS7B01G352000	chr7D	91.769	1871	104	14	1310	3158	560686912	560685070	0.000000e+00	2556.0
6	TraesCS7B01G352000	chr7D	92.485	1517	102	2	880	2396	560677153	560675649	0.000000e+00	2159.0
7	TraesCS7B01G352000	chr7D	89.984	629	62	1	1	628	560714136	560713508	0.000000e+00	811.0
8	TraesCS7B01G352000	chr7D	94.023	435	26	0	880	1314	560696120	560695686	0.000000e+00	660.0
9	TraesCS7B01G352000	chr7D	94.720	322	14	2	2838	3158	560675585	560675266	6.080000e-137	497.0
10	TraesCS7B01G352000	chr7D	85.294	68	10	0	1	68	560707817	560707750	1.570000e-08	71.3
11	TraesCS7B01G352000	chr5D	76.495	1204	211	44	1006	2158	423535301	423534119	9.760000e-165	590.0
12	TraesCS7B01G352000	chr5A	75.770	1201	222	50	1006	2158	537124942	537123763	2.770000e-150	542.0
13	TraesCS7B01G352000	chr6A	86.177	463	50	5	2633	3085	39150092	39149634	3.660000e-134	488.0
14	TraesCS7B01G352000	chr6A	77.284	832	158	20	1308	2125	616890729	616889915	7.980000e-126	460.0
15	TraesCS7B01G352000	chr6A	76.765	878	164	25	1286	2125	17947069	17946194	3.710000e-124	455.0
16	TraesCS7B01G352000	chr6A	93.878	49	3	0	2396	2444	17945844	17945796	1.210000e-09	75.0
17	TraesCS7B01G352000	chr6B	84.762	420	52	3	2633	3042	72187505	72187088	8.150000e-111	411.0
18	TraesCS7B01G352000	chr6B	80.000	325	65	0	1828	2152	718596959	718596635	1.130000e-59	241.0
19	TraesCS7B01G352000	chr1D	75.264	853	169	29	951	1785	458872227	458873055	4.980000e-98	368.0
20	TraesCS7B01G352000	chr3B	82.278	316	54	2	1828	2142	744540364	744540050	4.010000e-69	272.0
21	TraesCS7B01G352000	chr3B	81.905	315	55	2	1828	2141	747100233	747100546	6.720000e-67	265.0
22	TraesCS7B01G352000	chr3A	82.278	316	54	2	1828	2142	696347349	696347035	4.010000e-69	272.0
23	TraesCS7B01G352000	chr3D	81.962	316	55	2	1828	2142	560280059	560279745	1.870000e-67	267.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G352000	chr7B	608475913	608479070	3157	True	5832.000000	5832	100.000000	1	3158	1	chr7B.!!$R1	3157
1	TraesCS7B01G352000	chr7A	644855723	644861606	5883	True	1805.100000	3526	93.577000	1	3156	2	chr7A.!!$R2	3155
2	TraesCS7B01G352000	chr7D	560685070	560686912	1842	True	2556.000000	2556	91.769000	1310	3158	1	chr7D.!!$R1	1848
3	TraesCS7B01G352000	chr7D	560707750	560714136	6386	True	1401.766667	3323	88.626667	1	3158	3	chr7D.!!$R4	3157
4	TraesCS7B01G352000	chr7D	560675266	560677153	1887	True	1328.000000	2159	93.602500	880	3158	2	chr7D.!!$R3	2278
5	TraesCS7B01G352000	chr5D	423534119	423535301	1182	True	590.000000	590	76.495000	1006	2158	1	chr5D.!!$R1	1152
6	TraesCS7B01G352000	chr5A	537123763	537124942	1179	True	542.000000	542	75.770000	1006	2158	1	chr5A.!!$R1	1152
7	TraesCS7B01G352000	chr6A	616889915	616890729	814	True	460.000000	460	77.284000	1308	2125	1	chr6A.!!$R2	817
8	TraesCS7B01G352000	chr6A	17945796	17947069	1273	True	265.000000	455	85.321500	1286	2444	2	chr6A.!!$R3	1158
9	TraesCS7B01G352000	chr1D	458872227	458873055	828	False	368.000000	368	75.264000	951	1785	1	chr1D.!!$F1	834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
992	3767	0.095417	GATCAAACTCGCAGGTTCGC	59.905	55.0	0.0	0.0	0.0	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2891	5846	0.694771	TGATCAGCCTTGCAAGAGGT	59.305	50.0	28.05	19.04	39.11	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	636	6.543831	GGTCATATGAATCTAGTTTGCAGGTT	59.456	38.462	7.07	0.00	0.00	3.50
135	673	7.582667	TCTAGACGATCATGACCAAATTAGA	57.417	36.000	0.00	0.00	0.00	2.10
136	674	7.652727	TCTAGACGATCATGACCAAATTAGAG	58.347	38.462	0.00	0.00	0.00	2.43
227	2944	1.748493	GACAAAACACAACAGGGAGCA	59.252	47.619	0.00	0.00	0.00	4.26
255	2972	6.751514	TGGCTACGATCAAAACAATTACAT	57.248	33.333	0.00	0.00	0.00	2.29
364	3082	1.133325	AGGAGGATACCGACATCAGCT	60.133	52.381	0.00	0.00	34.73	4.24
366	3084	2.229302	GGAGGATACCGACATCAGCTAC	59.771	54.545	0.00	0.00	37.17	3.58
370	3088	2.034104	TACCGACATCAGCTACGTCT	57.966	50.000	0.00	0.00	0.00	4.18
374	3092	1.398739	CGACATCAGCTACGTCTCACT	59.601	52.381	0.00	0.00	0.00	3.41
379	3097	0.097325	CAGCTACGTCTCACTCGTCC	59.903	60.000	0.00	0.00	41.72	4.79
381	3099	1.357258	GCTACGTCTCACTCGTCCGA	61.357	60.000	0.00	0.00	41.72	4.55
394	3112	1.513622	GTCCGAGTCAAGGGCTCTC	59.486	63.158	0.00	0.00	0.00	3.20
408	3126	2.525629	TCTCACCGGGTTGGAGCA	60.526	61.111	6.32	0.00	42.00	4.26
414	3132	1.672356	CCGGGTTGGAGCAAGTCAG	60.672	63.158	0.00	0.00	42.00	3.51
419	3137	2.087646	GGTTGGAGCAAGTCAGATTCC	58.912	52.381	0.00	0.00	0.00	3.01
436	3154	5.003160	AGATTCCACAATGTCGTGATGAAA	58.997	37.500	0.00	0.00	39.34	2.69
440	3158	1.812571	ACAATGTCGTGATGAAAGCCC	59.187	47.619	0.00	0.00	0.00	5.19
459	3177	0.674581	CAGCTGGTTGATCGCCTTGA	60.675	55.000	5.57	0.00	0.00	3.02
460	3178	0.674895	AGCTGGTTGATCGCCTTGAC	60.675	55.000	7.51	0.00	0.00	3.18
465	3183	1.301322	TTGATCGCCTTGACGCACA	60.301	52.632	0.00	0.00	0.00	4.57
468	3186	3.529341	ATCGCCTTGACGCACACCA	62.529	57.895	0.00	0.00	0.00	4.17
475	3193	0.179043	TTGACGCACACCAAAGCCTA	60.179	50.000	0.00	0.00	0.00	3.93
477	3195	0.447801	GACGCACACCAAAGCCTATG	59.552	55.000	0.00	0.00	0.00	2.23
513	3231	1.452110	CGCATGGTCCAAGACATCAA	58.548	50.000	0.00	0.00	33.68	2.57
516	3234	2.421424	GCATGGTCCAAGACATCAACTC	59.579	50.000	0.00	0.00	33.68	3.01
524	3242	1.375908	GACATCAACTCTGGCCGCA	60.376	57.895	0.00	0.00	0.00	5.69
532	3250	1.961277	CTCTGGCCGCACGAAAGTT	60.961	57.895	0.00	0.00	46.40	2.66
534	3252	2.515057	TGGCCGCACGAAAGTTGT	60.515	55.556	0.00	0.00	46.40	3.32
536	3254	2.251642	GGCCGCACGAAAGTTGTCT	61.252	57.895	0.00	0.00	46.40	3.41
545	3294	4.776743	CACGAAAGTTGTCTGGATCAAAG	58.223	43.478	0.00	0.00	46.40	2.77
574	3323	5.224888	CACACATACTGCAAAATTCAGCTT	58.775	37.500	4.06	0.00	35.04	3.74
646	3396	1.615392	GCCCAGAACTTTTGACTGCAT	59.385	47.619	0.00	0.00	0.00	3.96
650	3400	4.321230	CCCAGAACTTTTGACTGCATTACC	60.321	45.833	0.00	0.00	0.00	2.85
657	3407	5.594317	ACTTTTGACTGCATTACCTTCTTGT	59.406	36.000	0.00	0.00	0.00	3.16
742	3501	2.603075	AAGGTAATGGGCTTTGCAGA	57.397	45.000	0.00	0.00	0.00	4.26
766	3527	0.954452	GGGCTGTGAGGACAACAAAG	59.046	55.000	0.00	0.00	0.00	2.77
772	3534	2.152016	GTGAGGACAACAAAGGCCTAC	58.848	52.381	5.16	0.00	0.00	3.18
979	3754	3.457234	CCAACATCTCCGATCGATCAAA	58.543	45.455	24.40	10.89	0.00	2.69
987	3762	0.848942	CGATCGATCAAACTCGCAGG	59.151	55.000	24.40	0.96	38.52	4.85
992	3767	0.095417	GATCAAACTCGCAGGTTCGC	59.905	55.000	0.00	0.00	0.00	4.70
1079	3857	2.975799	GTCGGCCTGCGAAACCAA	60.976	61.111	0.00	0.00	0.00	3.67
1221	3999	2.584608	CTCTTCCCCAACGGCGAT	59.415	61.111	16.62	0.00	0.00	4.58
1572	4381	2.039879	TCTCCTTGAAAGTAAGGTGGGC	59.960	50.000	4.63	0.00	45.94	5.36
1707	4525	3.849911	CACGTCCAGTGTCATACAGATT	58.150	45.455	0.00	0.00	45.51	2.40
1791	4609	4.202243	CCTGAGATGGAGAAGGAAGTCATC	60.202	50.000	0.00	0.00	35.69	2.92
2001	4855	1.966451	CTGCCACGGGTTGAAGGTC	60.966	63.158	0.00	0.00	0.00	3.85
2147	5053	0.511221	TCGAAAAAGCGGAAGAAGCG	59.489	50.000	0.00	0.00	40.04	4.68
2209	5117	4.143115	CGTCCTGTAATTTGCCTATATGCG	60.143	45.833	0.00	0.00	0.00	4.73
2211	5119	4.041075	TCCTGTAATTTGCCTATATGCGGA	59.959	41.667	0.00	0.00	0.00	5.54
2282	5190	4.636206	GGATGGTCTGTTAATTCAGGTGTC	59.364	45.833	0.00	0.00	36.25	3.67
2285	5193	4.102524	TGGTCTGTTAATTCAGGTGTCAGT	59.897	41.667	0.00	0.00	36.25	3.41
2286	5194	4.452455	GGTCTGTTAATTCAGGTGTCAGTG	59.548	45.833	0.00	0.00	36.25	3.66
2290	5198	5.056480	TGTTAATTCAGGTGTCAGTGTCAG	58.944	41.667	0.00	0.00	0.00	3.51
2333	5241	2.637872	TGTGCAAGTTCCCTAGCTAGTT	59.362	45.455	19.31	3.95	0.00	2.24
2345	5253	7.164233	TCCCTAGCTAGTTAGTCTTATCCTT	57.836	40.000	19.31	0.00	0.00	3.36
2441	5384	4.258457	TGAACCGGGATTTATGGGAAAT	57.742	40.909	6.32	0.00	0.00	2.17
2475	5418	2.700722	GACAGGGGTCTCCAAGAATC	57.299	55.000	0.00	0.00	40.99	2.52
2489	5432	3.679980	CCAAGAATCGTGGTTACAGTGAG	59.320	47.826	7.06	0.00	0.00	3.51
2523	5466	2.789409	AATCTTGGTCCAGTGCCTAC	57.211	50.000	0.00	0.00	0.00	3.18
2540	5483	3.818180	CCTACGAACCTTCTCCTAGCTA	58.182	50.000	0.00	0.00	0.00	3.32
2674	5619	3.874392	TGATGATCTCTTCGCAACAGA	57.126	42.857	0.00	0.00	0.00	3.41
2677	5622	5.906073	TGATGATCTCTTCGCAACAGATAA	58.094	37.500	0.00	0.00	0.00	1.75
2679	5624	5.330455	TGATCTCTTCGCAACAGATAACT	57.670	39.130	0.00	0.00	0.00	2.24
2681	5626	6.166279	TGATCTCTTCGCAACAGATAACTTT	58.834	36.000	0.00	0.00	0.00	2.66
2682	5627	5.845985	TCTCTTCGCAACAGATAACTTTG	57.154	39.130	0.00	0.00	0.00	2.77
2689	5634	3.191371	GCAACAGATAACTTTGTCCTGGG	59.809	47.826	0.00	0.00	0.00	4.45
2705	5650	0.850883	TGGGAAATTCTCCTGGGGCT	60.851	55.000	0.00	0.00	44.68	5.19
2706	5651	0.396278	GGGAAATTCTCCTGGGGCTG	60.396	60.000	0.00	0.00	44.68	4.85
2822	5768	3.673338	CGTCTCGATTCTTTTGTGCAGTA	59.327	43.478	0.00	0.00	0.00	2.74
2823	5769	4.149922	CGTCTCGATTCTTTTGTGCAGTAA	59.850	41.667	0.00	0.00	0.00	2.24
2828	5774	7.119699	TCTCGATTCTTTTGTGCAGTAATCATT	59.880	33.333	0.00	0.00	0.00	2.57
2873	5828	3.004752	AGTGGTGTTTGAAGCTTCTGT	57.995	42.857	26.09	0.00	0.00	3.41
2891	5846	4.096681	TCTGTATGGCTTCTCTTTCCTCA	58.903	43.478	0.00	0.00	0.00	3.86
2913	5869	2.434428	CTCTTGCAAGGCTGATCACTT	58.566	47.619	25.73	0.00	0.00	3.16
3060	6017	5.979517	GTGTTCAGGATGGTTCTTTTTCTTG	59.020	40.000	0.00	0.00	36.16	3.02
3096	6053	0.322277	CAGGAGTTGGCTGACAGCAT	60.322	55.000	27.87	11.19	44.75	3.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	636	4.732672	TCGTCTAGAGCACTACACTCTA	57.267	45.455	0.00	0.00	42.69	2.43
135	673	0.469518	GATACGGTAGGGCAGGTCCT	60.470	60.000	0.00	0.00	40.79	3.85
136	674	0.469518	AGATACGGTAGGGCAGGTCC	60.470	60.000	0.00	0.00	0.00	4.46
227	2944	3.417101	TGTTTTGATCGTAGCCATGGTT	58.583	40.909	14.67	10.52	0.00	3.67
255	2972	9.440773	GTGAGTATTATGCCTATGATCAATGAA	57.559	33.333	0.00	0.00	0.00	2.57
364	3082	2.746997	CTCGGACGAGTGAGACGTA	58.253	57.895	13.23	0.00	43.97	3.57
374	3092	2.282958	AGCCCTTGACTCGGACGA	60.283	61.111	0.00	0.00	0.00	4.20
379	3097	1.216710	GGTGAGAGCCCTTGACTCG	59.783	63.158	0.00	0.00	39.23	4.18
381	3099	2.286523	CCGGTGAGAGCCCTTGACT	61.287	63.158	0.00	0.00	0.00	3.41
385	3103	2.529389	AACCCGGTGAGAGCCCTT	60.529	61.111	0.00	0.00	0.00	3.95
394	3112	1.966451	GACTTGCTCCAACCCGGTG	60.966	63.158	0.00	0.00	35.57	4.94
408	3126	3.748048	CACGACATTGTGGAATCTGACTT	59.252	43.478	5.77	0.00	36.20	3.01
414	3132	4.944962	TTCATCACGACATTGTGGAATC	57.055	40.909	5.77	0.00	40.31	2.52
419	3137	2.414559	GGGCTTTCATCACGACATTGTG	60.415	50.000	0.00	0.00	41.28	3.33
436	3154	2.270205	CGATCAACCAGCTGGGCT	59.730	61.111	35.42	20.13	42.05	5.19
440	3158	0.674581	TCAAGGCGATCAACCAGCTG	60.675	55.000	6.78	6.78	0.00	4.24
459	3177	1.586154	GCATAGGCTTTGGTGTGCGT	61.586	55.000	7.07	0.00	36.96	5.24
460	3178	1.137404	GCATAGGCTTTGGTGTGCG	59.863	57.895	7.07	0.00	36.96	5.34
477	3195	2.179267	GCGGGCTTTGCTACAAGC	59.821	61.111	7.17	7.17	42.82	4.01
480	3198	4.998400	TGCGCGGGCTTTGCTACA	62.998	61.111	25.62	0.00	40.82	2.74
513	3231	2.357517	CTTTCGTGCGGCCAGAGT	60.358	61.111	2.24	0.00	0.00	3.24
516	3234	2.252260	CAACTTTCGTGCGGCCAG	59.748	61.111	2.24	0.00	0.00	4.85
524	3242	3.251004	GCTTTGATCCAGACAACTTTCGT	59.749	43.478	0.00	0.00	0.00	3.85
534	3252	1.699083	TGTGGTCTGCTTTGATCCAGA	59.301	47.619	0.00	0.00	35.84	3.86
536	3254	1.142667	TGTGTGGTCTGCTTTGATCCA	59.857	47.619	0.00	0.00	0.00	3.41
657	3407	8.432110	TTCGAGCTGAATTTTGCAGTATAATA	57.568	30.769	0.00	0.00	35.81	0.98
690	3440	5.064834	ACCTCACGTTCTCAAAAGAGAAAAC	59.935	40.000	9.29	0.00	42.12	2.43
714	3464	2.708325	AGCCCATTACCTTTTGGCAAAA	59.292	40.909	22.87	22.87	44.60	2.44
742	3501	0.478072	TTGTCCTCACAGCCCACAAT	59.522	50.000	0.00	0.00	32.71	2.71
772	3534	2.222953	GGTTAATGACTTGCCGCGTTAG	60.223	50.000	4.92	1.18	0.00	2.34
897	3671	2.617274	GCTGACGGTCAAACCTGGC	61.617	63.158	12.54	7.13	35.66	4.85
910	3684	2.515996	TTTGGGATCGACGGGCTGAC	62.516	60.000	0.00	0.00	0.00	3.51
956	3731	1.000283	GATCGATCGGAGATGTTGGCT	60.000	52.381	16.41	0.00	45.12	4.75
979	3754	4.719369	GTCGGCGAACCTGCGAGT	62.719	66.667	12.92	0.00	35.06	4.18
987	3762	3.849953	GACATGGCGTCGGCGAAC	61.850	66.667	16.53	5.40	41.24	3.95
1084	3862	2.652095	GCAGGTGGTACCCGCAGTA	61.652	63.158	10.07	0.00	41.28	2.74
1107	3885	4.554363	CGCGAGTAGCCCTGGACG	62.554	72.222	0.00	0.00	44.76	4.79
1572	4381	0.803768	CCTCGAAGGTCACATCAGCG	60.804	60.000	0.00	0.00	0.00	5.18
1584	4393	4.116328	TCGCCGCTGACCTCGAAG	62.116	66.667	0.00	0.00	0.00	3.79
1707	4525	2.886523	CACTTTTGCCTCCATGTCTTCA	59.113	45.455	0.00	0.00	0.00	3.02
1791	4609	1.072965	ACTTCTTGTGCTTCCTCCTGG	59.927	52.381	0.00	0.00	0.00	4.45
2001	4855	1.463056	TGGATAAACTTGAAGCACGCG	59.537	47.619	3.53	3.53	0.00	6.01
2209	5117	8.997323	CATATGTTGGATCTTTCTGATACTTCC	58.003	37.037	0.00	0.00	36.94	3.46
2282	5190	1.605232	TGCAGTTCAATGCTGACACTG	59.395	47.619	0.41	10.91	46.63	3.66
2285	5193	2.608506	GCAATGCAGTTCAATGCTGACA	60.609	45.455	0.00	0.00	45.70	3.58
2286	5194	1.990563	GCAATGCAGTTCAATGCTGAC	59.009	47.619	0.00	0.00	45.70	3.51
2345	5253	9.838975	CACAATTAGTGCACAAAGAAATATACA	57.161	29.630	21.04	0.00	42.15	2.29
2387	5296	5.860941	TTCCAAAAACATCTAAGGCACAA	57.139	34.783	0.00	0.00	0.00	3.33
2441	5384	4.105697	ACCCCTGTCTTGTCTTCCAAATTA	59.894	41.667	0.00	0.00	31.20	1.40
2456	5399	1.134670	CGATTCTTGGAGACCCCTGTC	60.135	57.143	0.00	0.00	42.09	3.51
2475	5418	6.535150	ACATTATCATTCTCACTGTAACCACG	59.465	38.462	0.00	0.00	0.00	4.94
2489	5432	8.469200	TGGACCAAGATTTTCACATTATCATTC	58.531	33.333	0.00	0.00	0.00	2.67
2523	5466	3.181485	CCAAGTAGCTAGGAGAAGGTTCG	60.181	52.174	0.00	0.00	0.00	3.95
2674	5619	5.952347	GGAGAATTTCCCAGGACAAAGTTAT	59.048	40.000	0.00	0.00	40.37	1.89
2677	5622	3.767711	GGAGAATTTCCCAGGACAAAGT	58.232	45.455	0.00	0.00	40.37	2.66
2689	5634	3.584733	ATACAGCCCCAGGAGAATTTC	57.415	47.619	0.00	0.00	0.00	2.17
2705	5650	7.225734	CGATTGTGGTATGTGGTAATGAATACA	59.774	37.037	0.00	0.00	36.14	2.29
2706	5651	7.572759	CGATTGTGGTATGTGGTAATGAATAC	58.427	38.462	0.00	0.00	0.00	1.89
2847	5793	1.268539	GCTTCAAACACCACTTCACCG	60.269	52.381	0.00	0.00	0.00	4.94
2858	5804	3.754965	AGCCATACAGAAGCTTCAAACA	58.245	40.909	27.57	10.45	31.27	2.83
2873	5828	3.452627	GAGGTGAGGAAAGAGAAGCCATA	59.547	47.826	0.00	0.00	0.00	2.74
2891	5846	0.694771	TGATCAGCCTTGCAAGAGGT	59.305	50.000	28.05	19.04	39.11	3.85
2913	5869	4.081142	TCAACGAGCTGAATATTTCCCTGA	60.081	41.667	0.00	0.00	0.00	3.86
3096	6053	5.047448	CCCAAACATTCCATTGTCATGTACA	60.047	40.000	0.00	0.00	35.88	2.90
3098	6055	5.083122	ACCCAAACATTCCATTGTCATGTA	58.917	37.500	0.00	0.00	30.74	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.