Multiple sequence alignment - TraesCS7B01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G351400 chr7B 100.000 2453 0 0 1 2453 608374332 608376784 0.000000e+00 4530
1 TraesCS7B01G351400 chr7B 89.708 583 58 2 6 587 516819863 516819282 0.000000e+00 743
2 TraesCS7B01G351400 chr7B 89.347 582 57 3 6 585 34403647 34403069 0.000000e+00 726
3 TraesCS7B01G351400 chr7B 84.250 400 43 5 1001 1393 608364310 608364696 2.980000e-99 372
4 TraesCS7B01G351400 chr7B 95.238 84 4 0 1562 1645 608364877 608364960 1.530000e-27 134
5 TraesCS7B01G351400 chr7A 85.841 1808 141 52 587 2320 644705853 644707619 0.000000e+00 1814
6 TraesCS7B01G351400 chr7A 86.631 374 30 7 1001 1367 644681544 644681904 1.770000e-106 396
7 TraesCS7B01G351400 chr7A 92.126 127 9 1 2328 2453 644707712 644707838 6.970000e-41 178
8 TraesCS7B01G351400 chr7D 84.941 1534 119 53 587 2071 560579909 560581379 0.000000e+00 1450
9 TraesCS7B01G351400 chr7D 85.570 395 47 9 1001 1393 560576119 560576505 2.940000e-109 405
10 TraesCS7B01G351400 chr7D 82.230 287 22 9 2144 2424 560581379 560581642 1.140000e-53 220
11 TraesCS7B01G351400 chr7D 92.857 84 6 0 1562 1645 560576686 560576769 3.310000e-24 122
12 TraesCS7B01G351400 chr1A 94.646 579 30 1 6 584 540363207 540363784 0.000000e+00 896
13 TraesCS7B01G351400 chr2A 89.456 588 57 4 1 587 449282201 449281618 0.000000e+00 737
14 TraesCS7B01G351400 chr4B 88.089 361 28 9 1001 1361 413191280 413190935 4.880000e-112 414
15 TraesCS7B01G351400 chr5A 80.224 536 95 10 55 585 549141952 549142481 2.290000e-105 392
16 TraesCS7B01G351400 chr4A 86.400 375 30 7 1001 1372 137894704 137895060 8.220000e-105 390
17 TraesCS7B01G351400 chr4D 95.897 195 8 0 1169 1363 335174749 335174555 1.420000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G351400 chr7B 608374332 608376784 2452 False 4530.00 4530 100.0000 1 2453 1 chr7B.!!$F1 2452
1 TraesCS7B01G351400 chr7B 516819282 516819863 581 True 743.00 743 89.7080 6 587 1 chr7B.!!$R2 581
2 TraesCS7B01G351400 chr7B 34403069 34403647 578 True 726.00 726 89.3470 6 585 1 chr7B.!!$R1 579
3 TraesCS7B01G351400 chr7B 608364310 608364960 650 False 253.00 372 89.7440 1001 1645 2 chr7B.!!$F2 644
4 TraesCS7B01G351400 chr7A 644705853 644707838 1985 False 996.00 1814 88.9835 587 2453 2 chr7A.!!$F2 1866
5 TraesCS7B01G351400 chr7D 560576119 560581642 5523 False 549.25 1450 86.3995 587 2424 4 chr7D.!!$F1 1837
6 TraesCS7B01G351400 chr1A 540363207 540363784 577 False 896.00 896 94.6460 6 584 1 chr1A.!!$F1 578
7 TraesCS7B01G351400 chr2A 449281618 449282201 583 True 737.00 737 89.4560 1 587 1 chr2A.!!$R1 586
8 TraesCS7B01G351400 chr5A 549141952 549142481 529 False 392.00 392 80.2240 55 585 1 chr5A.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 4161 0.305922 GCATTACTGCTCGCCATCAC 59.694 55.0 0.0 0.0 45.32 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 5285 0.034337 ATACCGACCACAACAAGCGT 59.966 50.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 2.106418 GCGGTTTCGAAACAAAGTGAC 58.894 47.619 34.79 18.71 40.63 3.67
134 135 1.692411 AACAAAGTGACAAGGGAGGC 58.308 50.000 0.00 0.00 0.00 4.70
270 271 0.321564 CGTGGCAAGGGAGATCAACA 60.322 55.000 0.00 0.00 0.00 3.33
426 427 6.436027 AGAGTGTCATGGGTTAGAAGATCTA 58.564 40.000 0.00 0.00 0.00 1.98
436 437 6.070995 TGGGTTAGAAGATCTACGAATGTTGT 60.071 38.462 0.00 0.00 0.00 3.32
440 441 3.503827 AGATCTACGAATGTTGTCGCA 57.496 42.857 0.00 0.00 45.00 5.10
533 534 5.116180 GTGTTGGATGTTATCTCGGATGAA 58.884 41.667 0.00 0.00 0.00 2.57
607 3812 1.144936 CACGGGCCAGAGGAATCTC 59.855 63.158 10.86 0.00 40.25 2.75
654 3859 6.061441 TGAATGGATTCATATTTAGGCGTGT 58.939 36.000 0.00 0.00 41.51 4.49
682 3887 3.437049 AGACGTCCAAAGAATTTAGCAGC 59.563 43.478 13.01 0.00 35.03 5.25
709 3914 4.693283 TCTAGCGATAAGGAAACATGTGG 58.307 43.478 0.00 0.00 0.00 4.17
744 3949 3.316308 AGTGAAATGACACAAAGACAGCC 59.684 43.478 0.00 0.00 42.45 4.85
795 4000 5.048507 GTGGGTATCGATTAGGAGACAAAC 58.951 45.833 1.71 0.00 29.89 2.93
797 4002 4.100498 GGGTATCGATTAGGAGACAAACCA 59.900 45.833 1.71 0.00 29.89 3.67
814 4019 2.607499 ACCAGTTGGCATGGAAAATGA 58.393 42.857 13.91 0.00 40.51 2.57
882 4098 5.472478 GTCTCGGTAAGGAAAAACCAGAATT 59.528 40.000 0.00 0.00 42.04 2.17
898 4114 1.198408 GAATTGAAACGGAACCGACCC 59.802 52.381 20.14 8.12 42.83 4.46
901 4117 1.117142 TGAAACGGAACCGACCCTCT 61.117 55.000 20.14 0.00 42.83 3.69
910 4126 0.964358 ACCGACCCTCTACGTTCTGG 60.964 60.000 0.00 0.00 0.00 3.86
923 4139 6.444633 TCTACGTTCTGGAACTGAAGTAAAG 58.555 40.000 11.03 0.00 46.46 1.85
924 4140 3.808174 ACGTTCTGGAACTGAAGTAAAGC 59.192 43.478 11.03 0.00 46.46 3.51
925 4141 3.807622 CGTTCTGGAACTGAAGTAAAGCA 59.192 43.478 11.03 0.00 46.46 3.91
942 4161 0.305922 GCATTACTGCTCGCCATCAC 59.694 55.000 0.00 0.00 45.32 3.06
967 4187 5.331309 CGTCCTGTATAAATTGAACGTAGCG 60.331 44.000 0.00 0.00 0.00 4.26
970 4190 2.362668 ATAAATTGAACGTAGCGCGC 57.637 45.000 26.66 26.66 46.11 6.86
973 4193 2.542837 AATTGAACGTAGCGCGCACG 62.543 55.000 36.27 36.27 46.11 5.34
995 4215 2.357396 CACGCACAGCCAGCACTA 60.357 61.111 0.00 0.00 0.00 2.74
997 4217 2.816958 CGCACAGCCAGCACTAGG 60.817 66.667 0.00 0.00 0.00 3.02
1350 4598 4.796231 AAGGGCTACTGCGACGCG 62.796 66.667 16.14 3.53 40.82 6.01
1402 4733 3.171388 ATGGCATCCGAGGGACCC 61.171 66.667 0.59 0.59 32.98 4.46
1454 4785 4.039042 GCTTGGTGCCCCATGATT 57.961 55.556 5.24 0.00 41.49 2.57
1456 4787 1.679559 GCTTGGTGCCCCATGATTCC 61.680 60.000 5.24 0.00 41.49 3.01
1457 4788 0.324552 CTTGGTGCCCCATGATTCCA 60.325 55.000 0.00 0.00 41.49 3.53
1458 4789 0.339162 TTGGTGCCCCATGATTCCAT 59.661 50.000 0.00 0.00 41.49 3.41
1470 4801 4.774660 ATGATTCCATGAAGCTGAGTCT 57.225 40.909 0.00 0.00 0.00 3.24
1471 4802 3.870274 TGATTCCATGAAGCTGAGTCTG 58.130 45.455 0.00 0.00 0.00 3.51
1472 4803 3.516700 TGATTCCATGAAGCTGAGTCTGA 59.483 43.478 0.47 0.00 0.00 3.27
1473 4804 4.019950 TGATTCCATGAAGCTGAGTCTGAA 60.020 41.667 0.47 0.00 0.00 3.02
1474 4805 3.606595 TCCATGAAGCTGAGTCTGAAG 57.393 47.619 0.47 0.00 0.00 3.02
1475 4806 2.008329 CCATGAAGCTGAGTCTGAAGC 58.992 52.381 0.47 0.00 39.82 3.86
1476 4807 2.008329 CATGAAGCTGAGTCTGAAGCC 58.992 52.381 0.47 0.00 40.42 4.35
1497 4828 2.105328 TGTGTGTCCACGTCCACG 59.895 61.111 0.00 0.00 44.92 4.94
1523 4854 1.001048 CGTGTAGGTTGGTTCTCGTGA 60.001 52.381 0.00 0.00 0.00 4.35
1547 4878 2.615869 GTGACTCCTGAGATGCTTCAC 58.384 52.381 0.22 0.59 0.00 3.18
1558 4889 2.998670 AGATGCTTCACGAGTTCATGTG 59.001 45.455 2.07 0.00 37.44 3.21
1632 4967 1.202533 CCCAATCGAGTTGCCTATCGT 60.203 52.381 0.00 0.00 39.86 3.73
1749 5089 6.430925 CCAATCAAAATCAAGGACTAGACACA 59.569 38.462 0.00 0.00 0.00 3.72
1832 5186 2.029815 TTGTAGAGCGCGCCAACA 59.970 55.556 30.33 25.43 0.00 3.33
1928 5283 2.121963 TCCAGGCCCCTGTGAAGT 60.122 61.111 12.98 0.00 42.15 3.01
1929 5284 1.774217 TCCAGGCCCCTGTGAAGTT 60.774 57.895 12.98 0.00 42.15 2.66
1930 5285 0.474854 TCCAGGCCCCTGTGAAGTTA 60.475 55.000 12.98 0.00 42.15 2.24
1931 5286 0.322546 CCAGGCCCCTGTGAAGTTAC 60.323 60.000 12.98 0.00 42.15 2.50
1933 5288 2.038837 GGCCCCTGTGAAGTTACGC 61.039 63.158 0.00 0.00 0.00 4.42
1935 5290 0.605589 GCCCCTGTGAAGTTACGCTT 60.606 55.000 0.00 0.00 40.76 4.68
1948 5303 0.672889 TACGCTTGTTGTGGTCGGTA 59.327 50.000 0.00 0.00 0.00 4.02
2070 5446 1.673760 CAATGGACGAACGTTTGCAG 58.326 50.000 15.63 4.16 0.00 4.41
2099 5475 4.346730 TGTTTGATGAAATGCCTCCTGAT 58.653 39.130 0.00 0.00 0.00 2.90
2148 5524 2.863132 AACCTAAATGCCACGTGGTA 57.137 45.000 33.92 31.09 37.57 3.25
2149 5525 3.359695 AACCTAAATGCCACGTGGTAT 57.640 42.857 33.92 31.87 42.52 2.73
2152 5528 2.612212 CCTAAATGCCACGTGGTATGTC 59.388 50.000 34.56 19.12 39.70 3.06
2165 5541 5.163120 ACGTGGTATGTCTCCTCCTCTAATA 60.163 44.000 0.00 0.00 0.00 0.98
2176 5552 4.090090 CCTCCTCTAATATGGTGTCGGAT 58.910 47.826 0.00 0.00 0.00 4.18
2320 5703 3.129813 ACGTCTACCGAGTTGATGCATTA 59.870 43.478 0.00 0.00 40.70 1.90
2321 5704 4.202121 ACGTCTACCGAGTTGATGCATTAT 60.202 41.667 0.00 0.00 40.70 1.28
2338 5807 4.806330 CATTATGCATTTGGCCAGAGATC 58.194 43.478 5.11 0.00 43.89 2.75
2357 5826 6.349243 AGATCTCTCTCATCATGAATGACC 57.651 41.667 0.00 0.00 39.52 4.02
2393 5862 1.677637 GGACCTCCTTCACCTAGGCG 61.678 65.000 9.30 0.00 35.15 5.52
2406 5875 4.628333 TCACCTAGGCGACTTTTTATTTCG 59.372 41.667 9.30 0.00 43.67 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.367202 GCGGGATGGGTCTCCTTCA 61.367 63.158 0.00 0.00 38.54 3.02
13 14 1.027357 CTTGATCTTTGCGGGATGGG 58.973 55.000 0.00 0.00 0.00 4.00
125 126 4.785453 GCACCTCCGCCTCCCTTG 62.785 72.222 0.00 0.00 0.00 3.61
134 135 1.994507 CTCTCAGTACCGCACCTCCG 61.995 65.000 0.00 0.00 0.00 4.63
270 271 1.276421 CTCCACATGAACCTTCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
426 427 4.678509 ATTTATGTGCGACAACATTCGT 57.321 36.364 4.46 0.00 41.09 3.85
436 437 5.861251 CCTACTTTTGCAAATTTATGTGCGA 59.139 36.000 13.65 0.00 43.93 5.10
440 441 8.303876 CCTACACCTACTTTTGCAAATTTATGT 58.696 33.333 13.65 14.28 0.00 2.29
501 502 2.910688 ACATCCAACACGAAGTCTGT 57.089 45.000 0.00 0.00 41.61 3.41
533 534 9.974980 TTATTTAAAGAACAAAGCTCGGAATTT 57.025 25.926 0.00 0.00 0.00 1.82
590 592 3.635510 GAGATTCCTCTGGCCCGT 58.364 61.111 0.00 0.00 36.50 5.28
607 3812 5.751509 CACCAATTGCATCATGTAAATGGAG 59.248 40.000 24.79 15.49 43.05 3.86
650 3855 1.493772 TTGGACGTCTTAAGCACACG 58.506 50.000 16.46 12.21 39.48 4.49
654 3859 6.348213 GCTAAATTCTTTGGACGTCTTAAGCA 60.348 38.462 16.46 9.83 0.00 3.91
682 3887 6.313905 ACATGTTTCCTTATCGCTAGAACAAG 59.686 38.462 0.00 0.00 0.00 3.16
709 3914 5.242838 TGTCATTTCACTTTCCATACCAACC 59.757 40.000 0.00 0.00 0.00 3.77
744 3949 2.364632 TCGTTTGGTATGCCATCCTTG 58.635 47.619 2.33 0.00 45.56 3.61
795 4000 3.258872 TCTTCATTTTCCATGCCAACTGG 59.741 43.478 0.00 0.00 38.53 4.00
797 4002 5.299949 GTTTCTTCATTTTCCATGCCAACT 58.700 37.500 0.00 0.00 0.00 3.16
814 4019 2.304092 GTCCCTTGTTTCCGGTTTCTT 58.696 47.619 0.00 0.00 0.00 2.52
882 4098 1.117142 AGAGGGTCGGTTCCGTTTCA 61.117 55.000 11.04 0.00 0.00 2.69
898 4114 4.506886 ACTTCAGTTCCAGAACGTAGAG 57.493 45.455 4.94 5.20 45.50 2.43
901 4117 4.986659 GCTTTACTTCAGTTCCAGAACGTA 59.013 41.667 4.94 0.00 45.50 3.57
910 4126 6.487689 AGCAGTAATGCTTTACTTCAGTTC 57.512 37.500 19.40 7.51 44.48 3.01
923 4139 0.305922 GTGATGGCGAGCAGTAATGC 59.694 55.000 7.15 7.15 0.00 3.56
924 4140 0.940126 GGTGATGGCGAGCAGTAATG 59.060 55.000 0.00 0.00 0.00 1.90
925 4141 0.530650 CGGTGATGGCGAGCAGTAAT 60.531 55.000 0.00 0.00 0.00 1.89
937 4156 6.509517 CGTTCAATTTATACAGGACGGTGATG 60.510 42.308 0.00 0.00 0.00 3.07
938 4157 5.522460 CGTTCAATTTATACAGGACGGTGAT 59.478 40.000 0.00 0.00 0.00 3.06
942 4161 5.051240 GCTACGTTCAATTTATACAGGACGG 60.051 44.000 0.00 0.00 0.00 4.79
978 4198 2.357396 TAGTGCTGGCTGTGCGTG 60.357 61.111 0.00 0.00 0.00 5.34
980 4200 2.816958 CCTAGTGCTGGCTGTGCG 60.817 66.667 0.00 0.00 0.00 5.34
981 4201 3.130160 GCCTAGTGCTGGCTGTGC 61.130 66.667 0.00 0.00 46.38 4.57
995 4215 3.854669 CGGAGGAAGCCATCGCCT 61.855 66.667 0.00 0.00 34.57 5.52
1098 4346 4.390556 AGGTCGGCAGGAGGAGCT 62.391 66.667 0.00 0.00 36.27 4.09
1417 4748 1.574702 CCTTTCCTTCCCGCGACAAC 61.575 60.000 8.23 0.00 0.00 3.32
1418 4749 1.302192 CCTTTCCTTCCCGCGACAA 60.302 57.895 8.23 0.00 0.00 3.18
1419 4750 2.345991 CCTTTCCTTCCCGCGACA 59.654 61.111 8.23 0.00 0.00 4.35
1420 4751 2.436115 CCCTTTCCTTCCCGCGAC 60.436 66.667 8.23 0.00 0.00 5.19
1421 4752 4.404098 GCCCTTTCCTTCCCGCGA 62.404 66.667 8.23 0.00 0.00 5.87
1449 4780 4.163649 TCAGACTCAGCTTCATGGAATCAT 59.836 41.667 0.00 0.00 0.00 2.45
1453 4784 3.867600 GCTTCAGACTCAGCTTCATGGAA 60.868 47.826 0.00 0.00 32.87 3.53
1454 4785 2.354503 GCTTCAGACTCAGCTTCATGGA 60.355 50.000 0.00 0.00 32.87 3.41
1456 4787 2.008329 GGCTTCAGACTCAGCTTCATG 58.992 52.381 3.67 0.00 36.20 3.07
1457 4788 1.627329 TGGCTTCAGACTCAGCTTCAT 59.373 47.619 3.67 0.00 36.20 2.57
1458 4789 1.051008 TGGCTTCAGACTCAGCTTCA 58.949 50.000 3.67 0.00 36.20 3.02
1460 4791 1.419387 ACTTGGCTTCAGACTCAGCTT 59.581 47.619 3.67 0.00 36.20 3.74
1463 4794 2.141517 CACACTTGGCTTCAGACTCAG 58.858 52.381 0.00 0.00 0.00 3.35
1464 4795 1.486310 ACACACTTGGCTTCAGACTCA 59.514 47.619 0.00 0.00 0.00 3.41
1466 4797 1.210478 ACACACACTTGGCTTCAGACT 59.790 47.619 0.00 0.00 0.00 3.24
1467 4798 1.599542 GACACACACTTGGCTTCAGAC 59.400 52.381 0.00 0.00 0.00 3.51
1469 4800 0.947244 GGACACACACTTGGCTTCAG 59.053 55.000 0.00 0.00 0.00 3.02
1470 4801 0.254462 TGGACACACACTTGGCTTCA 59.746 50.000 0.00 0.00 0.00 3.02
1471 4802 0.663153 GTGGACACACACTTGGCTTC 59.337 55.000 0.00 0.00 46.90 3.86
1472 4803 2.793831 GTGGACACACACTTGGCTT 58.206 52.632 0.00 0.00 46.90 4.35
1473 4804 4.559502 GTGGACACACACTTGGCT 57.440 55.556 0.00 0.00 46.90 4.75
1497 4828 2.030805 AGAACCAACCTACACGACGTAC 60.031 50.000 0.00 0.00 0.00 3.67
1499 4830 1.000938 GAGAACCAACCTACACGACGT 60.001 52.381 0.00 0.00 0.00 4.34
1503 4834 1.001048 TCACGAGAACCAACCTACACG 60.001 52.381 0.00 0.00 0.00 4.49
1504 4835 2.035576 ACTCACGAGAACCAACCTACAC 59.964 50.000 0.00 0.00 0.00 2.90
1506 4837 2.667724 CGACTCACGAGAACCAACCTAC 60.668 54.545 0.00 0.00 45.77 3.18
1507 4838 1.538512 CGACTCACGAGAACCAACCTA 59.461 52.381 0.00 0.00 45.77 3.08
1508 4839 0.314302 CGACTCACGAGAACCAACCT 59.686 55.000 0.00 0.00 45.77 3.50
1509 4840 0.031721 ACGACTCACGAGAACCAACC 59.968 55.000 0.00 0.00 45.77 3.77
1510 4841 1.129326 CACGACTCACGAGAACCAAC 58.871 55.000 0.00 0.00 45.77 3.77
1511 4842 1.026584 TCACGACTCACGAGAACCAA 58.973 50.000 0.00 0.00 45.77 3.67
1512 4843 0.309922 GTCACGACTCACGAGAACCA 59.690 55.000 0.00 0.00 45.77 3.67
1513 4844 0.592148 AGTCACGACTCACGAGAACC 59.408 55.000 0.00 0.00 45.77 3.62
1523 4854 0.814457 GCATCTCAGGAGTCACGACT 59.186 55.000 0.00 0.00 45.84 4.18
1547 4878 3.722957 CGCAACAAGATCACATGAACTCG 60.723 47.826 0.00 0.00 0.00 4.18
1558 4889 0.449388 CCCAGCTTCGCAACAAGATC 59.551 55.000 0.00 0.00 0.00 2.75
1632 4967 1.002624 CGAGCCTTGCTGGGGTTAA 60.003 57.895 0.00 0.00 39.88 2.01
1697 5032 3.063452 GTGTGTCACGTTTGCCCATATAG 59.937 47.826 0.00 0.00 0.00 1.31
1700 5035 1.231221 GTGTGTCACGTTTGCCCATA 58.769 50.000 0.00 0.00 0.00 2.74
1701 5036 0.749818 TGTGTGTCACGTTTGCCCAT 60.750 50.000 0.00 0.00 37.14 4.00
1703 5038 0.171455 TTTGTGTGTCACGTTTGCCC 59.829 50.000 0.00 0.00 37.14 5.36
1704 5039 1.264672 GTTTGTGTGTCACGTTTGCC 58.735 50.000 0.00 0.00 37.14 4.52
1749 5089 6.442564 TGGTTTGTCTTACCCTGATATGTACT 59.557 38.462 0.00 0.00 34.66 2.73
1832 5186 4.634133 TCTCGGTCAAACGCGCGT 62.634 61.111 32.73 32.73 0.00 6.01
1841 5195 1.908299 TCCTGCAAGCTCTCGGTCA 60.908 57.895 0.00 0.00 0.00 4.02
1928 5283 0.179078 ACCGACCACAACAAGCGTAA 60.179 50.000 0.00 0.00 0.00 3.18
1929 5284 0.672889 TACCGACCACAACAAGCGTA 59.327 50.000 0.00 0.00 0.00 4.42
1930 5285 0.034337 ATACCGACCACAACAAGCGT 59.966 50.000 0.00 0.00 0.00 5.07
1931 5286 1.999048 TATACCGACCACAACAAGCG 58.001 50.000 0.00 0.00 0.00 4.68
1933 5288 2.284150 CGCATATACCGACCACAACAAG 59.716 50.000 0.00 0.00 0.00 3.16
1935 5290 1.929230 CGCATATACCGACCACAACA 58.071 50.000 0.00 0.00 0.00 3.33
2039 5412 0.664761 GTCCATTGCATCCCACATCG 59.335 55.000 0.00 0.00 0.00 3.84
2042 5415 0.037447 TTCGTCCATTGCATCCCACA 59.963 50.000 0.00 0.00 0.00 4.17
2070 5446 3.578688 GCATTTCATCAAACAGGTCACC 58.421 45.455 0.00 0.00 0.00 4.02
2099 5475 1.466062 TTCTTCCCCCACCCCCTCTA 61.466 60.000 0.00 0.00 0.00 2.43
2148 5524 5.721225 ACACCATATTAGAGGAGGAGACAT 58.279 41.667 0.00 0.00 0.00 3.06
2149 5525 5.141182 GACACCATATTAGAGGAGGAGACA 58.859 45.833 0.00 0.00 0.00 3.41
2152 5528 3.508012 CCGACACCATATTAGAGGAGGAG 59.492 52.174 0.00 0.00 0.00 3.69
2165 5541 4.451900 GGATAACTTTCATCCGACACCAT 58.548 43.478 0.00 0.00 33.03 3.55
2176 5552 6.712998 TCAATCTCAAAACCGGATAACTTTCA 59.287 34.615 9.46 0.00 0.00 2.69
2251 5629 0.752054 TGGTCCGTCACGTTTACCTT 59.248 50.000 13.06 0.00 0.00 3.50
2320 5703 2.175069 AGAGATCTCTGGCCAAATGCAT 59.825 45.455 24.56 0.00 38.75 3.96
2321 5704 1.562942 AGAGATCTCTGGCCAAATGCA 59.437 47.619 24.56 0.00 38.75 3.96
2330 5713 7.789831 GTCATTCATGATGAGAGAGATCTCTGG 60.790 44.444 29.81 8.54 45.16 3.86
2332 5715 6.209986 GGTCATTCATGATGAGAGAGATCTCT 59.790 42.308 25.39 25.39 45.16 3.10
2338 5807 5.612351 ACATGGTCATTCATGATGAGAGAG 58.388 41.667 11.20 0.00 45.16 3.20
2357 5826 5.221541 GGAGGTCCTATCCAAAGACTACATG 60.222 48.000 0.00 0.00 36.79 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.