Multiple sequence alignment - TraesCS7B01G351300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G351300 chr7B 100.000 2507 0 0 1 2507 608363310 608365816 0.000000e+00 4630
1 TraesCS7B01G351300 chr7B 84.250 400 43 5 1001 1387 608375332 608375724 3.050000e-99 372
2 TraesCS7B01G351300 chr7B 95.890 146 4 1 1 144 110164865 110165010 4.170000e-58 235
3 TraesCS7B01G351300 chr7B 95.238 84 4 0 1568 1651 608375893 608375976 1.560000e-27 134
4 TraesCS7B01G351300 chr7A 85.003 1707 126 63 812 2450 644681357 644683001 0.000000e+00 1615
5 TraesCS7B01G351300 chr7A 83.641 379 45 12 986 1351 644706278 644706652 8.590000e-90 340
6 TraesCS7B01G351300 chr7A 80.488 164 21 8 2293 2449 228488520 228488361 5.670000e-22 115
7 TraesCS7B01G351300 chr7A 91.667 84 6 1 1569 1651 644706830 644706913 5.670000e-22 115
8 TraesCS7B01G351300 chr7D 91.900 1037 61 14 844 1869 560575965 560576989 0.000000e+00 1428
9 TraesCS7B01G351300 chr7D 84.211 380 41 15 986 1351 560580305 560580679 3.970000e-93 351
10 TraesCS7B01G351300 chr7D 79.775 356 37 13 2116 2450 560577876 560578217 2.510000e-55 226
11 TraesCS7B01G351300 chr7D 89.796 98 9 1 2354 2450 571115963 571116060 9.420000e-25 124
12 TraesCS7B01G351300 chr7D 83.333 138 5 6 2001 2120 560577347 560577484 7.330000e-21 111
13 TraesCS7B01G351300 chr7D 79.518 166 22 9 2293 2450 215225592 215225431 9.480000e-20 108
14 TraesCS7B01G351300 chr7D 88.506 87 7 2 1568 1651 560580855 560580941 4.410000e-18 102
15 TraesCS7B01G351300 chr4B 88.533 593 59 9 4 590 282476767 282476178 0.000000e+00 710
16 TraesCS7B01G351300 chr4B 90.000 430 33 3 160 589 625499171 625498752 4.710000e-152 547
17 TraesCS7B01G351300 chr4B 84.270 534 59 16 976 1502 413191306 413190791 4.820000e-137 497
18 TraesCS7B01G351300 chr4B 95.890 146 4 1 1 144 195158921 195159066 4.170000e-58 235
19 TraesCS7B01G351300 chr4B 95.890 146 4 1 1 144 364386925 364386780 4.170000e-58 235
20 TraesCS7B01G351300 chr6B 86.913 596 61 14 1 590 242225100 242224516 0.000000e+00 652
21 TraesCS7B01G351300 chr6B 93.367 392 25 1 199 589 209984946 209985337 1.670000e-161 579
22 TraesCS7B01G351300 chr6B 93.059 389 25 1 203 589 139239695 139239307 3.620000e-158 568
23 TraesCS7B01G351300 chr6B 85.405 370 42 10 1 365 370168391 370168029 8.470000e-100 374
24 TraesCS7B01G351300 chr6B 96.528 144 5 0 1 144 209984749 209984892 3.220000e-59 239
25 TraesCS7B01G351300 chr1B 85.620 605 62 9 1 595 128740530 128739941 1.650000e-171 612
26 TraesCS7B01G351300 chr1B 92.327 391 27 3 201 589 70753857 70753468 1.010000e-153 553
27 TraesCS7B01G351300 chr3B 92.269 401 27 4 191 589 46223342 46223740 1.300000e-157 566
28 TraesCS7B01G351300 chr3B 92.020 401 28 4 191 589 324695681 324695283 6.060000e-156 560
29 TraesCS7B01G351300 chr3B 97.872 141 3 0 4 144 745758124 745757984 6.930000e-61 244
30 TraesCS7B01G351300 chr1A 90.610 426 37 3 165 590 210177201 210176779 1.680000e-156 562
31 TraesCS7B01G351300 chr2B 91.771 401 29 3 191 589 311616582 311616184 2.820000e-154 555
32 TraesCS7B01G351300 chr4A 85.845 438 50 5 1000 1434 137894703 137895131 2.940000e-124 455
33 TraesCS7B01G351300 chr4D 84.915 411 39 14 1153 1562 335174759 335174371 6.500000e-106 394
34 TraesCS7B01G351300 chr4D 86.061 165 16 6 2293 2450 40175517 40175353 1.190000e-38 171
35 TraesCS7B01G351300 chr5A 97.222 144 4 0 1 144 504538002 504537859 6.930000e-61 244
36 TraesCS7B01G351300 chr3D 87.500 160 12 5 2293 2446 489641549 489641706 7.130000e-41 178
37 TraesCS7B01G351300 chr3D 83.041 171 8 7 2300 2450 27876368 27876199 4.350000e-28 135
38 TraesCS7B01G351300 chr6A 90.722 97 7 2 2354 2449 121074886 121074791 7.280000e-26 128
39 TraesCS7B01G351300 chr5D 89.796 98 8 2 2354 2450 518595830 518595734 9.420000e-25 124
40 TraesCS7B01G351300 chr2D 89.796 98 9 1 2354 2450 536590735 536590638 9.420000e-25 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G351300 chr7B 608363310 608365816 2506 False 4630.0 4630 100.0000 1 2507 1 chr7B.!!$F2 2506
1 TraesCS7B01G351300 chr7B 608375332 608375976 644 False 253.0 372 89.7440 1001 1651 2 chr7B.!!$F3 650
2 TraesCS7B01G351300 chr7A 644681357 644683001 1644 False 1615.0 1615 85.0030 812 2450 1 chr7A.!!$F1 1638
3 TraesCS7B01G351300 chr7A 644706278 644706913 635 False 227.5 340 87.6540 986 1651 2 chr7A.!!$F2 665
4 TraesCS7B01G351300 chr7D 560575965 560580941 4976 False 443.6 1428 85.5450 844 2450 5 chr7D.!!$F2 1606
5 TraesCS7B01G351300 chr4B 282476178 282476767 589 True 710.0 710 88.5330 4 590 1 chr4B.!!$R1 586
6 TraesCS7B01G351300 chr4B 413190791 413191306 515 True 497.0 497 84.2700 976 1502 1 chr4B.!!$R3 526
7 TraesCS7B01G351300 chr6B 242224516 242225100 584 True 652.0 652 86.9130 1 590 1 chr6B.!!$R2 589
8 TraesCS7B01G351300 chr6B 209984749 209985337 588 False 409.0 579 94.9475 1 589 2 chr6B.!!$F1 588
9 TraesCS7B01G351300 chr1B 128739941 128740530 589 True 612.0 612 85.6200 1 595 1 chr1B.!!$R2 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 672 0.179067 GTGGGGCATCGATACGGAAA 60.179 55.0 0.0 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2420 6730 0.177604 CTTTGTTTGGGTTGCTGCCA 59.822 50.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.603739 GTGGGGAAAGTGAGTGGGC 60.604 63.158 0.00 0.00 0.00 5.36
92 93 4.013728 TCCAAAATATCTTGTTGGTCCCG 58.986 43.478 1.87 0.00 42.11 5.14
139 140 0.906066 TGCGCCATTAGTAACCCTGA 59.094 50.000 4.18 0.00 0.00 3.86
144 145 4.699637 CGCCATTAGTAACCCTGATTACA 58.300 43.478 0.00 0.00 37.49 2.41
145 146 4.510340 CGCCATTAGTAACCCTGATTACAC 59.490 45.833 0.00 0.00 37.49 2.90
147 148 5.296035 GCCATTAGTAACCCTGATTACACAC 59.704 44.000 0.00 0.00 37.49 3.82
148 149 6.411376 CCATTAGTAACCCTGATTACACACA 58.589 40.000 0.00 0.00 37.49 3.72
149 150 6.315393 CCATTAGTAACCCTGATTACACACAC 59.685 42.308 0.00 0.00 37.49 3.82
150 151 4.967084 AGTAACCCTGATTACACACACA 57.033 40.909 0.00 0.00 37.49 3.72
151 152 4.638304 AGTAACCCTGATTACACACACAC 58.362 43.478 0.00 0.00 37.49 3.82
152 153 3.569194 AACCCTGATTACACACACACA 57.431 42.857 0.00 0.00 0.00 3.72
153 154 2.846193 ACCCTGATTACACACACACAC 58.154 47.619 0.00 0.00 0.00 3.82
154 155 2.171659 ACCCTGATTACACACACACACA 59.828 45.455 0.00 0.00 0.00 3.72
156 157 3.202097 CCTGATTACACACACACACACA 58.798 45.455 0.00 0.00 0.00 3.72
157 158 3.002246 CCTGATTACACACACACACACAC 59.998 47.826 0.00 0.00 0.00 3.82
158 159 3.600388 TGATTACACACACACACACACA 58.400 40.909 0.00 0.00 0.00 3.72
159 160 3.372514 TGATTACACACACACACACACAC 59.627 43.478 0.00 0.00 0.00 3.82
160 161 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
161 162 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
162 163 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
163 164 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
164 165 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
165 166 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
166 167 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
168 169 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
170 171 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
171 172 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
172 173 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
173 174 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
175 176 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
176 177 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
177 178 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
178 179 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
179 180 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
180 181 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
181 182 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
182 183 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
183 184 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
184 185 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
185 186 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
187 188 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
189 190 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
300 308 1.470890 TGCGCCATTAGTAGTTTTGCC 59.529 47.619 4.18 0.00 0.00 4.52
341 364 0.460311 ATACAGTACTGGCGCACTCC 59.540 55.000 26.12 0.00 34.19 3.85
342 365 1.601419 TACAGTACTGGCGCACTCCC 61.601 60.000 26.12 0.00 34.19 4.30
354 377 2.448542 ACTCCCTGGCTGGTGTGT 60.449 61.111 9.73 5.44 31.19 3.72
405 428 2.939022 GCTCGGATGCGCCATTAC 59.061 61.111 4.18 0.00 35.94 1.89
451 476 1.071071 TGTTACTAGTGGCGCACCTTT 59.929 47.619 10.83 0.00 34.49 3.11
463 488 2.404083 CACCTTTTGTCTGGTGCGT 58.596 52.632 0.00 0.00 45.68 5.24
526 551 4.525100 TGCGCCATTGGTATATAGTAGTGA 59.475 41.667 4.18 0.00 0.00 3.41
542 567 1.961394 AGTGACGCACTACTTCCTTGA 59.039 47.619 10.20 0.00 43.46 3.02
549 574 0.460284 ACTACTTCCTTGATGCGCCG 60.460 55.000 4.18 0.00 0.00 6.46
557 582 0.796312 CTTGATGCGCCGTTAGTGTT 59.204 50.000 4.18 0.00 0.00 3.32
558 583 1.196808 CTTGATGCGCCGTTAGTGTTT 59.803 47.619 4.18 0.00 0.00 2.83
562 587 3.062909 TGATGCGCCGTTAGTGTTTATTC 59.937 43.478 4.18 0.00 0.00 1.75
584 609 4.532521 TCCATCTATAGCCCTTTTCCTAGC 59.467 45.833 0.00 0.00 0.00 3.42
591 616 1.279271 GCCCTTTTCCTAGCAGTGAGA 59.721 52.381 0.00 0.00 0.00 3.27
603 628 3.533606 GCAGTGAGATGCTCTAAGGAA 57.466 47.619 0.00 0.00 43.07 3.36
604 629 3.866651 GCAGTGAGATGCTCTAAGGAAA 58.133 45.455 0.00 0.00 43.07 3.13
605 630 4.256920 GCAGTGAGATGCTCTAAGGAAAA 58.743 43.478 0.00 0.00 43.07 2.29
606 631 4.697352 GCAGTGAGATGCTCTAAGGAAAAA 59.303 41.667 0.00 0.00 43.07 1.94
626 651 6.825944 AAAAAGAAAAGAGGGAGCAGATAC 57.174 37.500 0.00 0.00 0.00 2.24
627 652 3.810310 AGAAAAGAGGGAGCAGATACG 57.190 47.619 0.00 0.00 0.00 3.06
628 653 2.432510 AGAAAAGAGGGAGCAGATACGG 59.567 50.000 0.00 0.00 0.00 4.02
629 654 1.867363 AAAGAGGGAGCAGATACGGT 58.133 50.000 0.00 0.00 0.00 4.83
630 655 1.115467 AAGAGGGAGCAGATACGGTG 58.885 55.000 0.00 0.00 0.00 4.94
631 656 0.757188 AGAGGGAGCAGATACGGTGG 60.757 60.000 0.00 0.00 0.00 4.61
632 657 1.749334 GAGGGAGCAGATACGGTGGG 61.749 65.000 0.00 0.00 0.00 4.61
633 658 2.808206 GGGAGCAGATACGGTGGGG 61.808 68.421 0.00 0.00 0.00 4.96
634 659 2.109181 GAGCAGATACGGTGGGGC 59.891 66.667 0.00 0.00 0.00 5.80
635 660 2.687200 AGCAGATACGGTGGGGCA 60.687 61.111 0.00 0.00 0.00 5.36
636 661 2.044806 GAGCAGATACGGTGGGGCAT 62.045 60.000 0.00 0.00 0.00 4.40
637 662 1.598130 GCAGATACGGTGGGGCATC 60.598 63.158 0.00 0.00 0.00 3.91
638 663 1.300931 CAGATACGGTGGGGCATCG 60.301 63.158 0.00 0.00 44.22 3.84
639 664 1.456892 AGATACGGTGGGGCATCGA 60.457 57.895 0.00 0.00 40.81 3.59
640 665 0.832135 AGATACGGTGGGGCATCGAT 60.832 55.000 0.00 0.00 40.81 3.59
641 666 0.892755 GATACGGTGGGGCATCGATA 59.107 55.000 0.00 0.00 40.81 2.92
642 667 0.606604 ATACGGTGGGGCATCGATAC 59.393 55.000 0.00 0.00 40.81 2.24
643 668 1.798234 TACGGTGGGGCATCGATACG 61.798 60.000 0.00 0.00 40.81 3.06
644 669 2.030562 GGTGGGGCATCGATACGG 59.969 66.667 0.00 0.00 0.00 4.02
645 670 2.504274 GGTGGGGCATCGATACGGA 61.504 63.158 0.00 0.00 0.00 4.69
646 671 1.444250 GTGGGGCATCGATACGGAA 59.556 57.895 0.00 0.00 0.00 4.30
647 672 0.179067 GTGGGGCATCGATACGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
648 673 0.179067 TGGGGCATCGATACGGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
649 674 0.179067 GGGGCATCGATACGGAAACA 60.179 55.000 0.00 0.00 0.00 2.83
650 675 1.658994 GGGCATCGATACGGAAACAA 58.341 50.000 0.00 0.00 0.00 2.83
651 676 2.011222 GGGCATCGATACGGAAACAAA 58.989 47.619 0.00 0.00 0.00 2.83
652 677 2.223180 GGGCATCGATACGGAAACAAAC 60.223 50.000 0.00 0.00 0.00 2.93
653 678 2.676342 GGCATCGATACGGAAACAAACT 59.324 45.455 0.00 0.00 0.00 2.66
654 679 3.485216 GGCATCGATACGGAAACAAACTG 60.485 47.826 0.00 0.00 0.00 3.16
655 680 3.369756 GCATCGATACGGAAACAAACTGA 59.630 43.478 0.00 0.00 0.00 3.41
656 681 4.034048 GCATCGATACGGAAACAAACTGAT 59.966 41.667 0.00 0.00 0.00 2.90
657 682 5.492854 CATCGATACGGAAACAAACTGATG 58.507 41.667 0.00 0.00 0.00 3.07
658 683 3.930229 TCGATACGGAAACAAACTGATGG 59.070 43.478 0.00 0.00 0.00 3.51
659 684 3.063452 CGATACGGAAACAAACTGATGGG 59.937 47.826 0.00 0.00 0.00 4.00
660 685 2.358322 ACGGAAACAAACTGATGGGT 57.642 45.000 0.00 0.00 0.00 4.51
661 686 3.495434 ACGGAAACAAACTGATGGGTA 57.505 42.857 0.00 0.00 0.00 3.69
662 687 3.143728 ACGGAAACAAACTGATGGGTAC 58.856 45.455 0.00 0.00 0.00 3.34
663 688 2.158841 CGGAAACAAACTGATGGGTACG 59.841 50.000 0.00 0.00 0.00 3.67
664 689 2.486592 GGAAACAAACTGATGGGTACGG 59.513 50.000 0.00 0.00 0.00 4.02
665 690 2.194201 AACAAACTGATGGGTACGGG 57.806 50.000 0.00 0.00 0.00 5.28
666 691 1.354101 ACAAACTGATGGGTACGGGA 58.646 50.000 0.00 0.00 0.00 5.14
667 692 1.700739 ACAAACTGATGGGTACGGGAA 59.299 47.619 0.00 0.00 0.00 3.97
668 693 2.106857 ACAAACTGATGGGTACGGGAAA 59.893 45.455 0.00 0.00 0.00 3.13
669 694 3.245122 ACAAACTGATGGGTACGGGAAAT 60.245 43.478 0.00 0.00 0.00 2.17
670 695 2.710096 ACTGATGGGTACGGGAAATG 57.290 50.000 0.00 0.00 0.00 2.32
671 696 1.211949 ACTGATGGGTACGGGAAATGG 59.788 52.381 0.00 0.00 0.00 3.16
672 697 1.488812 CTGATGGGTACGGGAAATGGA 59.511 52.381 0.00 0.00 0.00 3.41
673 698 1.916874 TGATGGGTACGGGAAATGGAA 59.083 47.619 0.00 0.00 0.00 3.53
674 699 2.309162 TGATGGGTACGGGAAATGGAAA 59.691 45.455 0.00 0.00 0.00 3.13
675 700 2.973983 TGGGTACGGGAAATGGAAAA 57.026 45.000 0.00 0.00 0.00 2.29
676 701 3.240310 TGGGTACGGGAAATGGAAAAA 57.760 42.857 0.00 0.00 0.00 1.94
677 702 2.892215 TGGGTACGGGAAATGGAAAAAC 59.108 45.455 0.00 0.00 0.00 2.43
678 703 2.892215 GGGTACGGGAAATGGAAAAACA 59.108 45.455 0.00 0.00 0.00 2.83
679 704 3.057104 GGGTACGGGAAATGGAAAAACAG 60.057 47.826 0.00 0.00 0.00 3.16
680 705 3.822167 GGTACGGGAAATGGAAAAACAGA 59.178 43.478 0.00 0.00 0.00 3.41
681 706 4.278919 GGTACGGGAAATGGAAAAACAGAA 59.721 41.667 0.00 0.00 0.00 3.02
682 707 5.221283 GGTACGGGAAATGGAAAAACAGAAA 60.221 40.000 0.00 0.00 0.00 2.52
683 708 4.689071 ACGGGAAATGGAAAAACAGAAAC 58.311 39.130 0.00 0.00 0.00 2.78
684 709 4.160626 ACGGGAAATGGAAAAACAGAAACA 59.839 37.500 0.00 0.00 0.00 2.83
685 710 4.744631 CGGGAAATGGAAAAACAGAAACAG 59.255 41.667 0.00 0.00 0.00 3.16
686 711 5.056480 GGGAAATGGAAAAACAGAAACAGG 58.944 41.667 0.00 0.00 0.00 4.00
687 712 5.163353 GGGAAATGGAAAAACAGAAACAGGA 60.163 40.000 0.00 0.00 0.00 3.86
688 713 5.985530 GGAAATGGAAAAACAGAAACAGGAG 59.014 40.000 0.00 0.00 0.00 3.69
689 714 6.183360 GGAAATGGAAAAACAGAAACAGGAGA 60.183 38.462 0.00 0.00 0.00 3.71
690 715 5.774498 ATGGAAAAACAGAAACAGGAGAC 57.226 39.130 0.00 0.00 0.00 3.36
691 716 3.625764 TGGAAAAACAGAAACAGGAGACG 59.374 43.478 0.00 0.00 0.00 4.18
692 717 3.875134 GGAAAAACAGAAACAGGAGACGA 59.125 43.478 0.00 0.00 0.00 4.20
693 718 4.515567 GGAAAAACAGAAACAGGAGACGAT 59.484 41.667 0.00 0.00 0.00 3.73
694 719 5.424121 AAAAACAGAAACAGGAGACGATG 57.576 39.130 0.00 0.00 0.00 3.84
695 720 2.751166 ACAGAAACAGGAGACGATGG 57.249 50.000 0.00 0.00 0.00 3.51
696 721 1.276421 ACAGAAACAGGAGACGATGGG 59.724 52.381 0.00 0.00 0.00 4.00
697 722 0.250513 AGAAACAGGAGACGATGGGC 59.749 55.000 0.00 0.00 0.00 5.36
698 723 0.250513 GAAACAGGAGACGATGGGCT 59.749 55.000 0.00 0.00 0.00 5.19
699 724 1.480954 GAAACAGGAGACGATGGGCTA 59.519 52.381 0.00 0.00 0.00 3.93
700 725 1.794714 AACAGGAGACGATGGGCTAT 58.205 50.000 0.00 0.00 0.00 2.97
701 726 1.333177 ACAGGAGACGATGGGCTATC 58.667 55.000 0.00 0.00 0.00 2.08
702 727 1.133325 ACAGGAGACGATGGGCTATCT 60.133 52.381 9.28 0.00 33.44 1.98
703 728 1.271934 CAGGAGACGATGGGCTATCTG 59.728 57.143 9.28 5.38 33.44 2.90
704 729 1.133325 AGGAGACGATGGGCTATCTGT 60.133 52.381 9.28 8.42 33.44 3.41
705 730 2.108425 AGGAGACGATGGGCTATCTGTA 59.892 50.000 9.28 0.00 33.44 2.74
706 731 2.891580 GGAGACGATGGGCTATCTGTAA 59.108 50.000 9.28 0.00 33.44 2.41
707 732 3.511934 GGAGACGATGGGCTATCTGTAAT 59.488 47.826 9.28 2.06 33.44 1.89
708 733 4.489810 GAGACGATGGGCTATCTGTAATG 58.510 47.826 9.28 0.00 33.44 1.90
709 734 4.152647 AGACGATGGGCTATCTGTAATGA 58.847 43.478 9.28 0.00 33.44 2.57
710 735 4.588951 AGACGATGGGCTATCTGTAATGAA 59.411 41.667 9.28 0.00 33.44 2.57
711 736 5.070446 AGACGATGGGCTATCTGTAATGAAA 59.930 40.000 9.28 0.00 33.44 2.69
712 737 5.680619 ACGATGGGCTATCTGTAATGAAAA 58.319 37.500 9.28 0.00 33.44 2.29
713 738 6.119536 ACGATGGGCTATCTGTAATGAAAAA 58.880 36.000 9.28 0.00 33.44 1.94
741 766 9.461312 AATATACAGTTTTCCTAAAGCATCACA 57.539 29.630 0.00 0.00 0.00 3.58
742 767 7.944729 ATACAGTTTTCCTAAAGCATCACAT 57.055 32.000 0.00 0.00 0.00 3.21
743 768 6.259550 ACAGTTTTCCTAAAGCATCACATC 57.740 37.500 0.00 0.00 0.00 3.06
744 769 6.006449 ACAGTTTTCCTAAAGCATCACATCT 58.994 36.000 0.00 0.00 0.00 2.90
745 770 7.168219 ACAGTTTTCCTAAAGCATCACATCTA 58.832 34.615 0.00 0.00 0.00 1.98
746 771 7.335422 ACAGTTTTCCTAAAGCATCACATCTAG 59.665 37.037 0.00 0.00 0.00 2.43
747 772 7.550551 CAGTTTTCCTAAAGCATCACATCTAGA 59.449 37.037 0.00 0.00 0.00 2.43
748 773 7.768120 AGTTTTCCTAAAGCATCACATCTAGAG 59.232 37.037 0.00 0.00 0.00 2.43
749 774 5.207110 TCCTAAAGCATCACATCTAGAGC 57.793 43.478 0.00 0.00 0.00 4.09
750 775 4.898265 TCCTAAAGCATCACATCTAGAGCT 59.102 41.667 0.00 0.00 0.00 4.09
751 776 4.989797 CCTAAAGCATCACATCTAGAGCTG 59.010 45.833 0.00 0.00 31.88 4.24
752 777 3.472283 AAGCATCACATCTAGAGCTGG 57.528 47.619 0.00 0.00 31.88 4.85
753 778 1.070445 AGCATCACATCTAGAGCTGGC 59.930 52.381 0.00 0.00 0.00 4.85
754 779 1.202615 GCATCACATCTAGAGCTGGCA 60.203 52.381 0.00 0.00 0.00 4.92
755 780 2.550423 GCATCACATCTAGAGCTGGCAT 60.550 50.000 0.00 0.00 0.00 4.40
756 781 3.306571 GCATCACATCTAGAGCTGGCATA 60.307 47.826 0.00 0.00 0.00 3.14
757 782 4.801914 GCATCACATCTAGAGCTGGCATAA 60.802 45.833 0.00 0.00 0.00 1.90
758 783 4.597404 TCACATCTAGAGCTGGCATAAG 57.403 45.455 0.00 0.00 0.00 1.73
759 784 3.963374 TCACATCTAGAGCTGGCATAAGT 59.037 43.478 0.00 0.00 0.00 2.24
760 785 5.140454 TCACATCTAGAGCTGGCATAAGTA 58.860 41.667 0.00 0.00 0.00 2.24
761 786 5.777223 TCACATCTAGAGCTGGCATAAGTAT 59.223 40.000 0.00 0.00 0.00 2.12
762 787 6.268617 TCACATCTAGAGCTGGCATAAGTATT 59.731 38.462 0.00 0.00 0.00 1.89
763 788 6.368243 CACATCTAGAGCTGGCATAAGTATTG 59.632 42.308 0.00 0.00 0.00 1.90
764 789 6.268617 ACATCTAGAGCTGGCATAAGTATTGA 59.731 38.462 0.00 0.00 0.00 2.57
765 790 6.731292 TCTAGAGCTGGCATAAGTATTGAA 57.269 37.500 0.00 0.00 0.00 2.69
766 791 7.124573 TCTAGAGCTGGCATAAGTATTGAAA 57.875 36.000 0.00 0.00 0.00 2.69
767 792 7.739825 TCTAGAGCTGGCATAAGTATTGAAAT 58.260 34.615 0.00 0.00 0.00 2.17
768 793 8.213679 TCTAGAGCTGGCATAAGTATTGAAATT 58.786 33.333 0.00 0.00 0.00 1.82
769 794 7.269477 AGAGCTGGCATAAGTATTGAAATTC 57.731 36.000 0.00 0.00 0.00 2.17
770 795 7.059156 AGAGCTGGCATAAGTATTGAAATTCT 58.941 34.615 0.00 0.00 0.00 2.40
771 796 8.213679 AGAGCTGGCATAAGTATTGAAATTCTA 58.786 33.333 0.00 0.00 0.00 2.10
772 797 8.752005 AGCTGGCATAAGTATTGAAATTCTAA 57.248 30.769 0.00 0.00 0.00 2.10
773 798 8.844244 AGCTGGCATAAGTATTGAAATTCTAAG 58.156 33.333 0.00 0.00 0.00 2.18
774 799 8.624776 GCTGGCATAAGTATTGAAATTCTAAGT 58.375 33.333 0.00 0.00 0.00 2.24
792 817 8.520835 TTCTAAGTATGTCATTGATCATACGC 57.479 34.615 20.90 9.23 46.08 4.42
793 818 5.829233 AAGTATGTCATTGATCATACGCG 57.171 39.130 20.90 3.53 46.08 6.01
794 819 5.121221 AGTATGTCATTGATCATACGCGA 57.879 39.130 15.93 0.00 46.08 5.87
795 820 5.528870 AGTATGTCATTGATCATACGCGAA 58.471 37.500 15.93 0.00 46.08 4.70
796 821 6.159293 AGTATGTCATTGATCATACGCGAAT 58.841 36.000 15.93 0.00 46.08 3.34
797 822 7.312899 AGTATGTCATTGATCATACGCGAATA 58.687 34.615 15.93 0.00 46.08 1.75
798 823 7.976175 AGTATGTCATTGATCATACGCGAATAT 59.024 33.333 15.93 0.00 46.08 1.28
799 824 7.601073 ATGTCATTGATCATACGCGAATATT 57.399 32.000 15.93 0.00 0.00 1.28
800 825 7.049140 TGTCATTGATCATACGCGAATATTC 57.951 36.000 15.93 5.30 0.00 1.75
841 866 5.185442 TCCATGCTTGATTGAGTAATGCAAA 59.815 36.000 0.22 0.00 29.88 3.68
862 887 1.202687 TGGGTATCGTCGATCGGTAGT 60.203 52.381 16.41 2.34 35.72 2.73
984 1009 4.139420 GCAGCTGCGCACTACGTG 62.139 66.667 25.23 0.00 46.11 4.49
1156 1194 2.919856 AGCAGTGCTGGGAGACGT 60.920 61.111 18.98 0.00 37.57 4.34
1162 1200 3.426568 GCTGGGAGACGTTGCTGC 61.427 66.667 0.00 0.00 0.00 5.25
1344 1382 3.691342 AAGGGCTACTGCGACGCA 61.691 61.111 22.99 22.99 40.82 5.24
1387 1431 1.152902 GGGCAGCACCATAGCATCA 60.153 57.895 0.00 0.00 42.05 3.07
1438 1488 1.068333 GTGTTCTTGATGGCGTTGCAT 60.068 47.619 0.00 0.00 0.00 3.96
1439 1489 1.199789 TGTTCTTGATGGCGTTGCATC 59.800 47.619 0.00 0.00 0.00 3.91
1440 1490 1.470098 GTTCTTGATGGCGTTGCATCT 59.530 47.619 0.00 0.00 0.00 2.90
1441 1491 1.089112 TCTTGATGGCGTTGCATCTG 58.911 50.000 0.00 0.00 0.00 2.90
1443 1493 1.936436 TTGATGGCGTTGCATCTGGC 61.936 55.000 0.00 0.00 45.13 4.85
1493 1546 1.221021 GTAGGAAAGGGCTCGGTGG 59.779 63.158 0.00 0.00 0.00 4.61
1519 1579 4.610905 CGTTAGGCTGAGTAGTACTATGCG 60.611 50.000 5.75 0.00 30.57 4.73
1522 1582 3.144506 GGCTGAGTAGTACTATGCGGTA 58.855 50.000 5.75 0.00 30.57 4.02
1536 1604 1.515519 CGGTATGTGTCCACGTCCG 60.516 63.158 12.64 12.64 35.97 4.79
1540 1608 0.609957 TATGTGTCCACGTCCGTCCT 60.610 55.000 0.00 0.00 0.00 3.85
1545 1613 1.078214 TCCACGTCCGTCCTCGTAT 60.078 57.895 0.00 0.00 38.52 3.06
1668 5941 8.869109 CCCCAGCAAATTAAGATCCAATAATAA 58.131 33.333 0.00 0.00 0.00 1.40
1698 5971 9.701098 TGTAATGAAAAGGTGTACTGTTAGTAG 57.299 33.333 0.00 0.00 30.12 2.57
1699 5972 9.702494 GTAATGAAAAGGTGTACTGTTAGTAGT 57.298 33.333 0.00 0.00 30.12 2.73
1713 5986 7.533426 ACTGTTAGTAGTACTGGTTTACATCG 58.467 38.462 13.29 2.46 0.00 3.84
1749 6022 9.710900 ATTGATTTTCCCTTGAACTAACATTTC 57.289 29.630 0.00 0.00 0.00 2.17
1754 6027 3.181520 CCCTTGAACTAACATTTCGAGCG 60.182 47.826 0.00 0.00 34.33 5.03
1818 6091 7.021196 CACGGACTTGACATGGTAAAAATTAG 58.979 38.462 0.00 0.00 0.00 1.73
1819 6092 6.938030 ACGGACTTGACATGGTAAAAATTAGA 59.062 34.615 0.00 0.00 0.00 2.10
1820 6093 7.119262 ACGGACTTGACATGGTAAAAATTAGAG 59.881 37.037 0.00 0.00 0.00 2.43
1821 6094 7.251281 GGACTTGACATGGTAAAAATTAGAGC 58.749 38.462 0.00 0.00 0.00 4.09
1865 6138 2.920490 CAGTTGTTCAAACCAAACCGTG 59.080 45.455 0.00 0.00 0.00 4.94
1866 6139 1.656594 GTTGTTCAAACCAAACCGTGC 59.343 47.619 0.00 0.00 0.00 5.34
1867 6140 0.888619 TGTTCAAACCAAACCGTGCA 59.111 45.000 0.00 0.00 0.00 4.57
1868 6141 1.478510 TGTTCAAACCAAACCGTGCAT 59.521 42.857 0.00 0.00 0.00 3.96
1869 6142 2.688446 TGTTCAAACCAAACCGTGCATA 59.312 40.909 0.00 0.00 0.00 3.14
1875 6148 2.014128 ACCAAACCGTGCATAGCATAC 58.986 47.619 0.00 0.00 41.91 2.39
1885 6158 4.803613 CGTGCATAGCATACTCTACACAAA 59.196 41.667 0.00 0.00 41.91 2.83
1886 6159 5.463392 CGTGCATAGCATACTCTACACAAAT 59.537 40.000 0.00 0.00 41.91 2.32
1887 6160 6.346120 CGTGCATAGCATACTCTACACAAATC 60.346 42.308 0.00 0.00 41.91 2.17
1895 6168 7.124298 AGCATACTCTACACAAATCTGGTAGAA 59.876 37.037 0.00 0.00 41.94 2.10
1897 6170 5.710984 ACTCTACACAAATCTGGTAGAACG 58.289 41.667 0.00 0.00 41.94 3.95
1899 6172 3.053831 ACACAAATCTGGTAGAACGGG 57.946 47.619 0.00 0.00 0.00 5.28
1901 6174 1.628846 ACAAATCTGGTAGAACGGGCT 59.371 47.619 0.00 0.00 0.00 5.19
1902 6175 2.280628 CAAATCTGGTAGAACGGGCTC 58.719 52.381 0.00 0.00 0.00 4.70
1903 6176 0.460311 AATCTGGTAGAACGGGCTCG 59.540 55.000 3.27 3.27 43.02 5.03
1904 6177 2.017559 ATCTGGTAGAACGGGCTCGC 62.018 60.000 5.51 0.00 40.63 5.03
1905 6178 2.992689 TGGTAGAACGGGCTCGCA 60.993 61.111 5.51 0.00 40.63 5.10
1916 6190 1.445238 GGCTCGCACTGTCTCTGTC 60.445 63.158 0.00 0.00 0.00 3.51
1931 6205 3.006430 TCTCTGTCACGCTCAATTTACCA 59.994 43.478 0.00 0.00 0.00 3.25
1987 6269 6.197981 CGTCGTAGTAGTTCTTCCTAAATCC 58.802 44.000 0.00 0.00 0.00 3.01
1988 6270 6.038050 CGTCGTAGTAGTTCTTCCTAAATCCT 59.962 42.308 0.00 0.00 0.00 3.24
1991 6273 7.613022 TCGTAGTAGTTCTTCCTAAATCCTCAA 59.387 37.037 0.00 0.00 0.00 3.02
1994 6276 8.616799 AGTAGTTCTTCCTAAATCCTCAATCT 57.383 34.615 0.00 0.00 0.00 2.40
1998 6280 9.218525 AGTTCTTCCTAAATCCTCAATCTATCA 57.781 33.333 0.00 0.00 0.00 2.15
2004 6286 4.348863 AATCCTCAATCTATCAGCGCTT 57.651 40.909 7.50 0.00 0.00 4.68
2023 6305 6.096001 AGCGCTTCAATTTATTCTTCCTTCAT 59.904 34.615 2.64 0.00 0.00 2.57
2038 6320 2.498167 CTTCATCCCCAATCCATCGAC 58.502 52.381 0.00 0.00 0.00 4.20
2039 6321 0.392706 TCATCCCCAATCCATCGACG 59.607 55.000 0.00 0.00 0.00 5.12
2058 6340 5.251999 GACGCTTCGATTTATGTATCACC 57.748 43.478 0.00 0.00 0.00 4.02
2059 6341 4.945246 ACGCTTCGATTTATGTATCACCT 58.055 39.130 0.00 0.00 0.00 4.00
2060 6342 6.080648 ACGCTTCGATTTATGTATCACCTA 57.919 37.500 0.00 0.00 0.00 3.08
2068 6351 7.232737 TCGATTTATGTATCACCTAGGTGTCAT 59.767 37.037 35.34 32.69 45.55 3.06
2070 6353 4.963318 ATGTATCACCTAGGTGTCATGG 57.037 45.455 35.34 14.36 45.55 3.66
2074 6357 1.555075 TCACCTAGGTGTCATGGAAGC 59.445 52.381 35.34 0.00 45.55 3.86
2075 6358 1.278985 CACCTAGGTGTCATGGAAGCA 59.721 52.381 30.57 0.00 40.91 3.91
2080 6363 0.813184 GGTGTCATGGAAGCATGTGG 59.187 55.000 0.00 0.00 34.39 4.17
2115 6412 2.353579 AGCGTCTTGTGGTGTTTTGTAC 59.646 45.455 0.00 0.00 0.00 2.90
2127 6424 3.688185 GTGTTTTGTACTTAGGCCTAGGC 59.312 47.826 26.55 26.55 41.06 3.93
2131 6428 1.289830 TGTACTTAGGCCTAGGCTCCA 59.710 52.381 32.18 15.30 39.70 3.86
2140 6437 1.341156 CCTAGGCTCCACCCTCCTTG 61.341 65.000 0.00 0.00 40.58 3.61
2141 6438 0.325671 CTAGGCTCCACCCTCCTTGA 60.326 60.000 0.00 0.00 40.58 3.02
2144 6441 1.761174 GCTCCACCCTCCTTGAACA 59.239 57.895 0.00 0.00 0.00 3.18
2153 6450 1.528129 CTCCTTGAACAGTGGCTTCC 58.472 55.000 0.00 0.00 0.00 3.46
2154 6451 0.110486 TCCTTGAACAGTGGCTTCCC 59.890 55.000 0.00 0.00 0.00 3.97
2155 6452 0.178992 CCTTGAACAGTGGCTTCCCA 60.179 55.000 0.00 0.00 39.32 4.37
2166 6463 4.101448 CTTCCCACCCCGGCAGAG 62.101 72.222 0.00 0.00 0.00 3.35
2167 6464 4.649705 TTCCCACCCCGGCAGAGA 62.650 66.667 0.00 0.00 0.00 3.10
2168 6465 4.649705 TCCCACCCCGGCAGAGAA 62.650 66.667 0.00 0.00 0.00 2.87
2169 6466 3.646715 CCCACCCCGGCAGAGAAA 61.647 66.667 0.00 0.00 0.00 2.52
2170 6467 2.434331 CCACCCCGGCAGAGAAAA 59.566 61.111 0.00 0.00 0.00 2.29
2171 6468 1.228429 CCACCCCGGCAGAGAAAAA 60.228 57.895 0.00 0.00 0.00 1.94
2172 6469 1.524008 CCACCCCGGCAGAGAAAAAC 61.524 60.000 0.00 0.00 0.00 2.43
2181 6478 1.801178 GCAGAGAAAAACCACGAGAGG 59.199 52.381 0.00 0.00 0.00 3.69
2184 6481 2.300437 AGAGAAAAACCACGAGAGGGAG 59.700 50.000 0.00 0.00 35.60 4.30
2209 6506 2.625790 CTCTCTCCTAACATTCTCCCGG 59.374 54.545 0.00 0.00 0.00 5.73
2237 6534 2.126031 GGGCGACCGAGAGTTCAC 60.126 66.667 0.00 0.00 43.64 3.18
2240 6537 1.215647 GCGACCGAGAGTTCACCAT 59.784 57.895 0.00 0.00 0.00 3.55
2241 6538 1.078759 GCGACCGAGAGTTCACCATG 61.079 60.000 0.00 0.00 0.00 3.66
2252 6549 3.981211 AGTTCACCATGCATTGTTGAAC 58.019 40.909 24.60 24.60 35.71 3.18
2262 6559 5.375417 TGCATTGTTGAACCTCAATGTAG 57.625 39.130 15.77 0.00 46.97 2.74
2264 6561 5.048782 TGCATTGTTGAACCTCAATGTAGTC 60.049 40.000 15.77 4.08 46.97 2.59
2265 6562 5.621422 CATTGTTGAACCTCAATGTAGTCG 58.379 41.667 8.97 0.00 43.08 4.18
2294 6592 7.147312 TGGCTGATTAATGAAAAGTTCAAGTG 58.853 34.615 0.00 0.00 43.95 3.16
2295 6593 6.089954 GGCTGATTAATGAAAAGTTCAAGTGC 59.910 38.462 0.00 0.00 43.95 4.40
2303 6601 2.844122 AAGTTCAAGTGCGTTTGGTC 57.156 45.000 0.83 0.00 0.00 4.02
2313 6611 0.170339 GCGTTTGGTCTATGCCCAAC 59.830 55.000 0.00 0.00 41.55 3.77
2318 6616 0.958382 TGGTCTATGCCCAACGTTGC 60.958 55.000 22.93 13.12 0.00 4.17
2321 6619 2.361865 TATGCCCAACGTTGCCCC 60.362 61.111 22.93 12.57 0.00 5.80
2322 6620 3.211403 TATGCCCAACGTTGCCCCA 62.211 57.895 22.93 17.44 0.00 4.96
2327 6625 2.415426 CAACGTTGCCCCACCAAC 59.585 61.111 16.51 0.00 41.21 3.77
2362 6661 7.551035 CAAAATTTTGGTTCAGATTTGGTCA 57.449 32.000 21.00 0.00 34.59 4.02
2363 6662 7.983307 CAAAATTTTGGTTCAGATTTGGTCAA 58.017 30.769 21.00 0.00 34.59 3.18
2365 6664 5.667539 TTTTGGTTCAGATTTGGTCAACA 57.332 34.783 0.00 0.00 0.00 3.33
2366 6665 5.867903 TTTGGTTCAGATTTGGTCAACAT 57.132 34.783 0.00 0.00 0.00 2.71
2367 6666 5.867903 TTGGTTCAGATTTGGTCAACATT 57.132 34.783 0.00 0.00 0.00 2.71
2368 6667 5.199024 TGGTTCAGATTTGGTCAACATTG 57.801 39.130 0.00 0.00 0.00 2.82
2380 6690 4.815308 TGGTCAACATTGGCAAGAAAAATG 59.185 37.500 5.96 0.00 37.33 2.32
2383 6693 6.205270 GGTCAACATTGGCAAGAAAAATGAAT 59.795 34.615 5.96 0.00 35.67 2.57
2399 6709 9.670719 GAAAAATGAATTAGAGTTGGCTATAGC 57.329 33.333 16.78 16.78 41.14 2.97
2401 6711 8.986929 AAATGAATTAGAGTTGGCTATAGCTT 57.013 30.769 23.53 7.19 41.70 3.74
2412 6722 2.096496 GGCTATAGCTTATTGGCATGCG 59.904 50.000 23.53 0.00 41.70 4.73
2413 6723 3.002791 GCTATAGCTTATTGGCATGCGA 58.997 45.455 17.75 4.51 38.21 5.10
2435 6745 1.965935 AAATTGGCAGCAACCCAAAC 58.034 45.000 6.80 0.00 44.80 2.93
2436 6746 0.835941 AATTGGCAGCAACCCAAACA 59.164 45.000 6.80 0.00 44.80 2.83
2437 6747 0.835941 ATTGGCAGCAACCCAAACAA 59.164 45.000 6.80 0.00 44.80 2.83
2446 6756 3.199727 AGCAACCCAAACAAAGACCAATT 59.800 39.130 0.00 0.00 0.00 2.32
2449 6759 5.675827 GCAACCCAAACAAAGACCAATTTTG 60.676 40.000 0.00 0.00 40.48 2.44
2450 6760 5.428184 ACCCAAACAAAGACCAATTTTGA 57.572 34.783 4.87 0.00 38.55 2.69
2451 6761 6.000246 ACCCAAACAAAGACCAATTTTGAT 58.000 33.333 4.87 0.00 38.55 2.57
2452 6762 6.422333 ACCCAAACAAAGACCAATTTTGATT 58.578 32.000 4.87 0.00 38.55 2.57
2453 6763 7.569240 ACCCAAACAAAGACCAATTTTGATTA 58.431 30.769 4.87 0.00 38.55 1.75
2454 6764 7.497579 ACCCAAACAAAGACCAATTTTGATTAC 59.502 33.333 4.87 0.00 38.55 1.89
2455 6765 7.714813 CCCAAACAAAGACCAATTTTGATTACT 59.285 33.333 4.87 0.00 38.55 2.24
2456 6766 9.108284 CCAAACAAAGACCAATTTTGATTACTT 57.892 29.630 4.87 0.00 38.55 2.24
2485 6795 7.592051 TGATTTTTCAAAAGCAATTAATGGGC 58.408 30.769 0.52 4.60 40.83 5.36
2486 6796 7.447853 TGATTTTTCAAAAGCAATTAATGGGCT 59.552 29.630 8.63 8.63 40.83 5.19
2487 6797 8.860780 ATTTTTCAAAAGCAATTAATGGGCTA 57.139 26.923 13.48 0.00 36.76 3.93
2488 6798 7.903995 TTTTCAAAAGCAATTAATGGGCTAG 57.096 32.000 13.48 8.39 36.76 3.42
2489 6799 5.596836 TCAAAAGCAATTAATGGGCTAGG 57.403 39.130 13.48 7.86 36.76 3.02
2490 6800 4.122046 CAAAAGCAATTAATGGGCTAGGC 58.878 43.478 8.00 8.00 36.76 3.93
2491 6801 3.319031 AAGCAATTAATGGGCTAGGCT 57.681 42.857 16.80 0.00 36.76 4.58
2492 6802 4.453480 AAGCAATTAATGGGCTAGGCTA 57.547 40.909 16.80 11.05 36.76 3.93
2493 6803 4.026356 AGCAATTAATGGGCTAGGCTAG 57.974 45.455 17.33 17.33 35.82 3.42
2494 6804 3.084786 GCAATTAATGGGCTAGGCTAGG 58.915 50.000 22.40 5.26 0.00 3.02
2495 6805 3.498661 GCAATTAATGGGCTAGGCTAGGT 60.499 47.826 22.40 5.11 0.00 3.08
2496 6806 4.074970 CAATTAATGGGCTAGGCTAGGTG 58.925 47.826 22.40 0.00 0.00 4.00
2497 6807 2.787339 TAATGGGCTAGGCTAGGTGA 57.213 50.000 22.40 0.00 0.00 4.02
2498 6808 2.124560 AATGGGCTAGGCTAGGTGAT 57.875 50.000 22.40 0.00 0.00 3.06
2499 6809 2.124560 ATGGGCTAGGCTAGGTGATT 57.875 50.000 22.40 0.00 0.00 2.57
2500 6810 1.893315 TGGGCTAGGCTAGGTGATTT 58.107 50.000 22.40 0.00 0.00 2.17
2501 6811 2.205342 TGGGCTAGGCTAGGTGATTTT 58.795 47.619 22.40 0.00 0.00 1.82
2502 6812 2.580783 TGGGCTAGGCTAGGTGATTTTT 59.419 45.455 22.40 0.00 0.00 1.94
2503 6813 3.215151 GGGCTAGGCTAGGTGATTTTTC 58.785 50.000 22.40 2.86 0.00 2.29
2504 6814 3.371595 GGGCTAGGCTAGGTGATTTTTCA 60.372 47.826 22.40 0.00 0.00 2.69
2505 6815 4.270008 GGCTAGGCTAGGTGATTTTTCAA 58.730 43.478 22.40 0.00 0.00 2.69
2506 6816 4.705023 GGCTAGGCTAGGTGATTTTTCAAA 59.295 41.667 22.40 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.331214 ATTTTGGACAGCCACACCTG 58.669 50.000 0.00 0.00 45.94 4.00
92 93 0.393267 TGGTGCGCCATTAGTAACCC 60.393 55.000 16.89 0.00 40.46 4.11
139 140 3.126171 GTGTGTGTGTGTGTGTGTGTAAT 59.874 43.478 0.00 0.00 0.00 1.89
144 145 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
145 146 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
147 148 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
148 149 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
149 150 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
150 151 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
151 152 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
152 153 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
153 154 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
154 155 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
156 157 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
157 158 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
158 159 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
159 160 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
160 161 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
161 162 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
162 163 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
163 164 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
164 165 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
165 166 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
166 167 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
168 169 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
170 171 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
171 172 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
172 173 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
173 174 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
264 272 2.584970 CACCGTGTCACAGTGCGT 60.585 61.111 6.40 0.00 0.00 5.24
341 364 1.003580 AGTAATGACACACCAGCCAGG 59.996 52.381 0.00 0.00 45.67 4.45
342 365 2.479566 AGTAATGACACACCAGCCAG 57.520 50.000 0.00 0.00 0.00 4.85
451 476 2.224185 ACACTAATGACGCACCAGACAA 60.224 45.455 0.00 0.00 0.00 3.18
526 551 1.726853 GCATCAAGGAAGTAGTGCGT 58.273 50.000 0.00 0.00 0.00 5.24
532 557 0.036765 AACGGCGCATCAAGGAAGTA 60.037 50.000 10.83 0.00 0.00 2.24
538 563 0.796312 AACACTAACGGCGCATCAAG 59.204 50.000 10.83 3.38 0.00 3.02
539 564 1.231221 AAACACTAACGGCGCATCAA 58.769 45.000 10.83 0.00 0.00 2.57
542 567 2.353579 GGAATAAACACTAACGGCGCAT 59.646 45.455 10.83 0.00 0.00 4.73
549 574 8.376270 AGGGCTATAGATGGAATAAACACTAAC 58.624 37.037 3.21 0.00 0.00 2.34
557 582 7.648177 AGGAAAAGGGCTATAGATGGAATAA 57.352 36.000 3.21 0.00 0.00 1.40
558 583 7.092846 GCTAGGAAAAGGGCTATAGATGGAATA 60.093 40.741 3.21 0.00 0.00 1.75
562 587 4.287067 TGCTAGGAAAAGGGCTATAGATGG 59.713 45.833 3.21 0.00 0.00 3.51
603 628 5.412904 CGTATCTGCTCCCTCTTTTCTTTTT 59.587 40.000 0.00 0.00 0.00 1.94
604 629 4.938226 CGTATCTGCTCCCTCTTTTCTTTT 59.062 41.667 0.00 0.00 0.00 2.27
605 630 4.508662 CGTATCTGCTCCCTCTTTTCTTT 58.491 43.478 0.00 0.00 0.00 2.52
606 631 3.118592 CCGTATCTGCTCCCTCTTTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
607 632 2.432510 CCGTATCTGCTCCCTCTTTTCT 59.567 50.000 0.00 0.00 0.00 2.52
608 633 2.168728 ACCGTATCTGCTCCCTCTTTTC 59.831 50.000 0.00 0.00 0.00 2.29
609 634 2.093447 CACCGTATCTGCTCCCTCTTTT 60.093 50.000 0.00 0.00 0.00 2.27
610 635 1.482593 CACCGTATCTGCTCCCTCTTT 59.517 52.381 0.00 0.00 0.00 2.52
611 636 1.115467 CACCGTATCTGCTCCCTCTT 58.885 55.000 0.00 0.00 0.00 2.85
612 637 0.757188 CCACCGTATCTGCTCCCTCT 60.757 60.000 0.00 0.00 0.00 3.69
613 638 1.742768 CCACCGTATCTGCTCCCTC 59.257 63.158 0.00 0.00 0.00 4.30
614 639 1.762460 CCCACCGTATCTGCTCCCT 60.762 63.158 0.00 0.00 0.00 4.20
615 640 2.808206 CCCCACCGTATCTGCTCCC 61.808 68.421 0.00 0.00 0.00 4.30
616 641 2.822399 CCCCACCGTATCTGCTCC 59.178 66.667 0.00 0.00 0.00 4.70
617 642 2.044806 ATGCCCCACCGTATCTGCTC 62.045 60.000 0.00 0.00 0.00 4.26
618 643 2.044806 GATGCCCCACCGTATCTGCT 62.045 60.000 0.00 0.00 0.00 4.24
619 644 1.598130 GATGCCCCACCGTATCTGC 60.598 63.158 0.00 0.00 0.00 4.26
620 645 1.300931 CGATGCCCCACCGTATCTG 60.301 63.158 0.00 0.00 0.00 2.90
621 646 0.832135 ATCGATGCCCCACCGTATCT 60.832 55.000 0.00 0.00 0.00 1.98
622 647 0.892755 TATCGATGCCCCACCGTATC 59.107 55.000 8.54 0.00 0.00 2.24
623 648 0.606604 GTATCGATGCCCCACCGTAT 59.393 55.000 8.54 0.00 0.00 3.06
624 649 1.798234 CGTATCGATGCCCCACCGTA 61.798 60.000 8.54 0.00 0.00 4.02
625 650 2.819550 GTATCGATGCCCCACCGT 59.180 61.111 8.54 0.00 0.00 4.83
626 651 2.355837 CGTATCGATGCCCCACCG 60.356 66.667 8.54 0.00 0.00 4.94
627 652 2.030562 CCGTATCGATGCCCCACC 59.969 66.667 8.54 0.00 0.00 4.61
628 653 0.179067 TTTCCGTATCGATGCCCCAC 60.179 55.000 8.54 0.00 0.00 4.61
629 654 0.179067 GTTTCCGTATCGATGCCCCA 60.179 55.000 8.54 0.00 0.00 4.96
630 655 0.179067 TGTTTCCGTATCGATGCCCC 60.179 55.000 8.54 0.00 0.00 5.80
631 656 1.658994 TTGTTTCCGTATCGATGCCC 58.341 50.000 8.54 0.00 0.00 5.36
632 657 2.676342 AGTTTGTTTCCGTATCGATGCC 59.324 45.455 8.54 0.00 0.00 4.40
633 658 3.369756 TCAGTTTGTTTCCGTATCGATGC 59.630 43.478 8.54 5.66 0.00 3.91
634 659 5.492854 CATCAGTTTGTTTCCGTATCGATG 58.507 41.667 8.54 0.00 0.00 3.84
635 660 4.570772 CCATCAGTTTGTTTCCGTATCGAT 59.429 41.667 2.16 2.16 0.00 3.59
636 661 3.930229 CCATCAGTTTGTTTCCGTATCGA 59.070 43.478 0.00 0.00 0.00 3.59
637 662 3.063452 CCCATCAGTTTGTTTCCGTATCG 59.937 47.826 0.00 0.00 0.00 2.92
638 663 4.007659 ACCCATCAGTTTGTTTCCGTATC 58.992 43.478 0.00 0.00 0.00 2.24
639 664 4.028993 ACCCATCAGTTTGTTTCCGTAT 57.971 40.909 0.00 0.00 0.00 3.06
640 665 3.495434 ACCCATCAGTTTGTTTCCGTA 57.505 42.857 0.00 0.00 0.00 4.02
641 666 2.358322 ACCCATCAGTTTGTTTCCGT 57.642 45.000 0.00 0.00 0.00 4.69
642 667 2.158841 CGTACCCATCAGTTTGTTTCCG 59.841 50.000 0.00 0.00 0.00 4.30
643 668 2.486592 CCGTACCCATCAGTTTGTTTCC 59.513 50.000 0.00 0.00 0.00 3.13
644 669 2.486592 CCCGTACCCATCAGTTTGTTTC 59.513 50.000 0.00 0.00 0.00 2.78
645 670 2.106857 TCCCGTACCCATCAGTTTGTTT 59.893 45.455 0.00 0.00 0.00 2.83
646 671 1.700739 TCCCGTACCCATCAGTTTGTT 59.299 47.619 0.00 0.00 0.00 2.83
647 672 1.354101 TCCCGTACCCATCAGTTTGT 58.646 50.000 0.00 0.00 0.00 2.83
648 673 2.483014 TTCCCGTACCCATCAGTTTG 57.517 50.000 0.00 0.00 0.00 2.93
649 674 3.352648 CATTTCCCGTACCCATCAGTTT 58.647 45.455 0.00 0.00 0.00 2.66
650 675 2.356741 CCATTTCCCGTACCCATCAGTT 60.357 50.000 0.00 0.00 0.00 3.16
651 676 1.211949 CCATTTCCCGTACCCATCAGT 59.788 52.381 0.00 0.00 0.00 3.41
652 677 1.488812 TCCATTTCCCGTACCCATCAG 59.511 52.381 0.00 0.00 0.00 2.90
653 678 1.585895 TCCATTTCCCGTACCCATCA 58.414 50.000 0.00 0.00 0.00 3.07
654 679 2.721425 TTCCATTTCCCGTACCCATC 57.279 50.000 0.00 0.00 0.00 3.51
655 680 3.459710 TTTTCCATTTCCCGTACCCAT 57.540 42.857 0.00 0.00 0.00 4.00
656 681 2.892215 GTTTTTCCATTTCCCGTACCCA 59.108 45.455 0.00 0.00 0.00 4.51
657 682 2.892215 TGTTTTTCCATTTCCCGTACCC 59.108 45.455 0.00 0.00 0.00 3.69
658 683 3.822167 TCTGTTTTTCCATTTCCCGTACC 59.178 43.478 0.00 0.00 0.00 3.34
659 684 5.441709 TTCTGTTTTTCCATTTCCCGTAC 57.558 39.130 0.00 0.00 0.00 3.67
660 685 5.360144 TGTTTCTGTTTTTCCATTTCCCGTA 59.640 36.000 0.00 0.00 0.00 4.02
661 686 4.160626 TGTTTCTGTTTTTCCATTTCCCGT 59.839 37.500 0.00 0.00 0.00 5.28
662 687 4.688021 TGTTTCTGTTTTTCCATTTCCCG 58.312 39.130 0.00 0.00 0.00 5.14
663 688 5.056480 CCTGTTTCTGTTTTTCCATTTCCC 58.944 41.667 0.00 0.00 0.00 3.97
664 689 5.912892 TCCTGTTTCTGTTTTTCCATTTCC 58.087 37.500 0.00 0.00 0.00 3.13
665 690 6.697455 GTCTCCTGTTTCTGTTTTTCCATTTC 59.303 38.462 0.00 0.00 0.00 2.17
666 691 6.573434 GTCTCCTGTTTCTGTTTTTCCATTT 58.427 36.000 0.00 0.00 0.00 2.32
667 692 5.221048 CGTCTCCTGTTTCTGTTTTTCCATT 60.221 40.000 0.00 0.00 0.00 3.16
668 693 4.275936 CGTCTCCTGTTTCTGTTTTTCCAT 59.724 41.667 0.00 0.00 0.00 3.41
669 694 3.625764 CGTCTCCTGTTTCTGTTTTTCCA 59.374 43.478 0.00 0.00 0.00 3.53
670 695 3.875134 TCGTCTCCTGTTTCTGTTTTTCC 59.125 43.478 0.00 0.00 0.00 3.13
671 696 5.444122 CATCGTCTCCTGTTTCTGTTTTTC 58.556 41.667 0.00 0.00 0.00 2.29
672 697 4.275936 CCATCGTCTCCTGTTTCTGTTTTT 59.724 41.667 0.00 0.00 0.00 1.94
673 698 3.815401 CCATCGTCTCCTGTTTCTGTTTT 59.185 43.478 0.00 0.00 0.00 2.43
674 699 3.403038 CCATCGTCTCCTGTTTCTGTTT 58.597 45.455 0.00 0.00 0.00 2.83
675 700 2.289694 CCCATCGTCTCCTGTTTCTGTT 60.290 50.000 0.00 0.00 0.00 3.16
676 701 1.276421 CCCATCGTCTCCTGTTTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
677 702 2.009042 GCCCATCGTCTCCTGTTTCTG 61.009 57.143 0.00 0.00 0.00 3.02
678 703 0.250513 GCCCATCGTCTCCTGTTTCT 59.749 55.000 0.00 0.00 0.00 2.52
679 704 0.250513 AGCCCATCGTCTCCTGTTTC 59.749 55.000 0.00 0.00 0.00 2.78
680 705 1.568504 TAGCCCATCGTCTCCTGTTT 58.431 50.000 0.00 0.00 0.00 2.83
681 706 1.689273 GATAGCCCATCGTCTCCTGTT 59.311 52.381 0.00 0.00 0.00 3.16
682 707 1.133325 AGATAGCCCATCGTCTCCTGT 60.133 52.381 0.00 0.00 38.81 4.00
683 708 1.271934 CAGATAGCCCATCGTCTCCTG 59.728 57.143 0.00 0.00 38.81 3.86
684 709 1.133325 ACAGATAGCCCATCGTCTCCT 60.133 52.381 0.00 0.00 38.81 3.69
685 710 1.333177 ACAGATAGCCCATCGTCTCC 58.667 55.000 0.00 0.00 38.81 3.71
686 711 4.218635 TCATTACAGATAGCCCATCGTCTC 59.781 45.833 0.00 0.00 38.81 3.36
687 712 4.152647 TCATTACAGATAGCCCATCGTCT 58.847 43.478 0.00 0.00 38.81 4.18
688 713 4.521130 TCATTACAGATAGCCCATCGTC 57.479 45.455 0.00 0.00 38.81 4.20
689 714 4.955811 TTCATTACAGATAGCCCATCGT 57.044 40.909 0.00 0.00 38.81 3.73
690 715 6.618287 TTTTTCATTACAGATAGCCCATCG 57.382 37.500 0.00 0.00 38.81 3.84
715 740 9.461312 TGTGATGCTTTAGGAAAACTGTATATT 57.539 29.630 0.00 0.00 0.00 1.28
716 741 9.632638 ATGTGATGCTTTAGGAAAACTGTATAT 57.367 29.630 0.00 0.00 0.00 0.86
717 742 9.109393 GATGTGATGCTTTAGGAAAACTGTATA 57.891 33.333 0.00 0.00 0.00 1.47
718 743 7.831193 AGATGTGATGCTTTAGGAAAACTGTAT 59.169 33.333 0.00 0.00 0.00 2.29
719 744 7.168219 AGATGTGATGCTTTAGGAAAACTGTA 58.832 34.615 0.00 0.00 0.00 2.74
720 745 6.006449 AGATGTGATGCTTTAGGAAAACTGT 58.994 36.000 0.00 0.00 0.00 3.55
721 746 6.506500 AGATGTGATGCTTTAGGAAAACTG 57.493 37.500 0.00 0.00 0.00 3.16
722 747 7.624549 TCTAGATGTGATGCTTTAGGAAAACT 58.375 34.615 0.00 0.00 0.00 2.66
723 748 7.466590 GCTCTAGATGTGATGCTTTAGGAAAAC 60.467 40.741 0.00 0.00 0.00 2.43
724 749 6.540189 GCTCTAGATGTGATGCTTTAGGAAAA 59.460 38.462 0.00 0.00 0.00 2.29
725 750 6.051717 GCTCTAGATGTGATGCTTTAGGAAA 58.948 40.000 0.00 0.00 0.00 3.13
726 751 5.365025 AGCTCTAGATGTGATGCTTTAGGAA 59.635 40.000 0.00 0.00 0.00 3.36
727 752 4.898265 AGCTCTAGATGTGATGCTTTAGGA 59.102 41.667 0.00 0.00 0.00 2.94
728 753 4.989797 CAGCTCTAGATGTGATGCTTTAGG 59.010 45.833 0.00 0.00 0.00 2.69
729 754 4.989797 CCAGCTCTAGATGTGATGCTTTAG 59.010 45.833 0.00 0.00 0.00 1.85
730 755 4.741837 GCCAGCTCTAGATGTGATGCTTTA 60.742 45.833 0.00 0.00 0.00 1.85
731 756 3.806380 CCAGCTCTAGATGTGATGCTTT 58.194 45.455 0.00 0.00 0.00 3.51
732 757 2.485124 GCCAGCTCTAGATGTGATGCTT 60.485 50.000 0.00 0.00 0.00 3.91
733 758 1.070445 GCCAGCTCTAGATGTGATGCT 59.930 52.381 0.00 0.00 0.00 3.79
734 759 1.202615 TGCCAGCTCTAGATGTGATGC 60.203 52.381 0.00 0.00 0.00 3.91
735 760 2.904697 TGCCAGCTCTAGATGTGATG 57.095 50.000 0.00 0.00 0.00 3.07
736 761 4.592351 ACTTATGCCAGCTCTAGATGTGAT 59.408 41.667 0.00 0.00 0.00 3.06
737 762 3.963374 ACTTATGCCAGCTCTAGATGTGA 59.037 43.478 0.00 0.00 0.00 3.58
738 763 4.333913 ACTTATGCCAGCTCTAGATGTG 57.666 45.455 0.00 0.00 0.00 3.21
739 764 6.268617 TCAATACTTATGCCAGCTCTAGATGT 59.731 38.462 0.00 0.00 0.00 3.06
740 765 6.695429 TCAATACTTATGCCAGCTCTAGATG 58.305 40.000 0.00 0.00 0.00 2.90
741 766 6.924913 TCAATACTTATGCCAGCTCTAGAT 57.075 37.500 0.00 0.00 0.00 1.98
742 767 6.731292 TTCAATACTTATGCCAGCTCTAGA 57.269 37.500 0.00 0.00 0.00 2.43
743 768 7.976135 ATTTCAATACTTATGCCAGCTCTAG 57.024 36.000 0.00 0.00 0.00 2.43
744 769 8.213679 AGAATTTCAATACTTATGCCAGCTCTA 58.786 33.333 0.00 0.00 0.00 2.43
745 770 7.059156 AGAATTTCAATACTTATGCCAGCTCT 58.941 34.615 0.00 0.00 0.00 4.09
746 771 7.269477 AGAATTTCAATACTTATGCCAGCTC 57.731 36.000 0.00 0.00 0.00 4.09
747 772 8.752005 TTAGAATTTCAATACTTATGCCAGCT 57.248 30.769 0.00 0.00 0.00 4.24
748 773 8.624776 ACTTAGAATTTCAATACTTATGCCAGC 58.375 33.333 0.00 0.00 0.00 4.85
766 791 9.144747 GCGTATGATCAATGACATACTTAGAAT 57.855 33.333 21.65 0.00 43.51 2.40
767 792 7.326063 CGCGTATGATCAATGACATACTTAGAA 59.674 37.037 21.65 0.00 43.51 2.10
768 793 6.801862 CGCGTATGATCAATGACATACTTAGA 59.198 38.462 21.65 0.00 43.51 2.10
769 794 6.801862 TCGCGTATGATCAATGACATACTTAG 59.198 38.462 21.65 16.10 43.51 2.18
770 795 6.674066 TCGCGTATGATCAATGACATACTTA 58.326 36.000 21.65 11.74 43.51 2.24
771 796 5.528870 TCGCGTATGATCAATGACATACTT 58.471 37.500 21.65 0.00 43.51 2.24
772 797 5.121221 TCGCGTATGATCAATGACATACT 57.879 39.130 21.65 0.00 43.51 2.12
773 798 5.822584 TTCGCGTATGATCAATGACATAC 57.177 39.130 17.82 17.82 42.78 2.39
774 799 8.702163 AATATTCGCGTATGATCAATGACATA 57.298 30.769 5.77 0.00 0.00 2.29
775 800 7.463251 CGAATATTCGCGTATGATCAATGACAT 60.463 37.037 23.67 0.00 44.26 3.06
776 801 6.183359 CGAATATTCGCGTATGATCAATGACA 60.183 38.462 23.67 0.00 44.26 3.58
777 802 6.171685 CGAATATTCGCGTATGATCAATGAC 58.828 40.000 23.67 0.00 44.26 3.06
778 803 6.317910 CGAATATTCGCGTATGATCAATGA 57.682 37.500 23.67 0.00 44.26 2.57
813 838 6.591062 GCATTACTCAATCAAGCATGGAAAAA 59.409 34.615 0.00 0.00 0.00 1.94
814 839 6.101332 GCATTACTCAATCAAGCATGGAAAA 58.899 36.000 0.00 0.00 0.00 2.29
815 840 5.185442 TGCATTACTCAATCAAGCATGGAAA 59.815 36.000 0.00 0.00 0.00 3.13
816 841 4.705991 TGCATTACTCAATCAAGCATGGAA 59.294 37.500 0.00 0.00 0.00 3.53
817 842 4.271661 TGCATTACTCAATCAAGCATGGA 58.728 39.130 0.00 0.00 0.00 3.41
818 843 4.642445 TGCATTACTCAATCAAGCATGG 57.358 40.909 0.00 0.00 0.00 3.66
841 866 2.082231 CTACCGATCGACGATACCCAT 58.918 52.381 18.66 0.00 45.77 4.00
862 887 3.556999 TCGTTTCCCATTCTGGTTTTCA 58.443 40.909 0.00 0.00 35.17 2.69
984 1009 1.293924 CCATGCTGTTGATCGACTCC 58.706 55.000 14.27 5.76 0.00 3.85
1065 1091 4.570663 ATAGTCGCCGCTGACGCC 62.571 66.667 8.89 0.00 43.70 5.68
1071 1097 2.408022 GTCGTCATAGTCGCCGCT 59.592 61.111 0.00 0.00 0.00 5.52
1156 1194 0.587768 CACGACTTGATGTGCAGCAA 59.412 50.000 0.00 2.85 35.24 3.91
1162 1200 1.492873 CCGTGCACGACTTGATGTG 59.507 57.895 39.10 15.99 43.02 3.21
1421 1465 1.469703 CAGATGCAACGCCATCAAGAA 59.530 47.619 12.10 0.00 43.15 2.52
1476 1529 1.993391 CCCACCGAGCCCTTTCCTA 60.993 63.158 0.00 0.00 0.00 2.94
1519 1579 0.457337 GACGGACGTGGACACATACC 60.457 60.000 0.53 2.09 0.00 2.73
1522 1582 1.874345 GAGGACGGACGTGGACACAT 61.874 60.000 0.53 0.00 0.00 3.21
1536 1604 1.202268 CCCACGAGAACATACGAGGAC 60.202 57.143 0.00 0.00 41.29 3.85
1540 1608 0.813184 GGACCCACGAGAACATACGA 59.187 55.000 0.00 0.00 0.00 3.43
1545 1613 2.741092 GCAGGACCCACGAGAACA 59.259 61.111 0.00 0.00 0.00 3.18
1668 5941 8.635765 AACAGTACACCTTTTCATTACATCAT 57.364 30.769 0.00 0.00 0.00 2.45
1670 5943 9.216117 ACTAACAGTACACCTTTTCATTACATC 57.784 33.333 0.00 0.00 0.00 3.06
1723 5996 9.710900 GAAATGTTAGTTCAAGGGAAAATCAAT 57.289 29.630 0.00 0.00 34.13 2.57
1733 6006 3.678072 TCGCTCGAAATGTTAGTTCAAGG 59.322 43.478 0.00 0.00 0.00 3.61
1740 6013 6.911484 AAATTTTGTCGCTCGAAATGTTAG 57.089 33.333 0.00 0.00 39.34 2.34
1749 6022 5.804449 TGAAATCAAAATTTTGTCGCTCG 57.196 34.783 25.98 3.67 39.18 5.03
1754 6027 8.165428 TGTCACGTTTGAAATCAAAATTTTGTC 58.835 29.630 25.98 18.23 46.08 3.18
1820 6093 3.741476 CCTTGCCCAGCGACTTGC 61.741 66.667 0.00 0.00 46.98 4.01
1821 6094 3.741476 GCCTTGCCCAGCGACTTG 61.741 66.667 0.00 0.00 0.00 3.16
1839 6112 2.553079 TGGTTTGAACAACTGAACGC 57.447 45.000 0.00 0.00 0.00 4.84
1845 6118 2.672760 GCACGGTTTGGTTTGAACAACT 60.673 45.455 0.00 0.00 0.00 3.16
1846 6119 1.656594 GCACGGTTTGGTTTGAACAAC 59.343 47.619 0.00 0.00 0.00 3.32
1865 6138 6.146837 CCAGATTTGTGTAGAGTATGCTATGC 59.853 42.308 0.00 0.00 0.00 3.14
1866 6139 7.212976 ACCAGATTTGTGTAGAGTATGCTATG 58.787 38.462 0.00 0.00 0.00 2.23
1867 6140 7.366847 ACCAGATTTGTGTAGAGTATGCTAT 57.633 36.000 0.00 0.00 0.00 2.97
1868 6141 6.791867 ACCAGATTTGTGTAGAGTATGCTA 57.208 37.500 0.00 0.00 0.00 3.49
1869 6142 5.683876 ACCAGATTTGTGTAGAGTATGCT 57.316 39.130 0.00 0.00 0.00 3.79
1875 6148 5.103000 CCGTTCTACCAGATTTGTGTAGAG 58.897 45.833 11.64 5.28 37.86 2.43
1885 6158 2.017559 GCGAGCCCGTTCTACCAGAT 62.018 60.000 0.00 0.00 38.24 2.90
1886 6159 2.707849 GCGAGCCCGTTCTACCAGA 61.708 63.158 0.00 0.00 38.24 3.86
1887 6160 2.202756 GCGAGCCCGTTCTACCAG 60.203 66.667 0.00 0.00 38.24 4.00
1895 6168 4.057428 GAGACAGTGCGAGCCCGT 62.057 66.667 0.00 0.00 38.24 5.28
1897 6170 2.125753 CAGAGACAGTGCGAGCCC 60.126 66.667 0.00 0.00 0.00 5.19
1899 6172 1.006314 GTGACAGAGACAGTGCGAGC 61.006 60.000 0.00 0.00 0.00 5.03
1901 6174 1.282875 CGTGACAGAGACAGTGCGA 59.717 57.895 0.00 0.00 0.00 5.10
1902 6175 2.368105 GCGTGACAGAGACAGTGCG 61.368 63.158 0.00 0.00 0.00 5.34
1903 6176 1.006314 GAGCGTGACAGAGACAGTGC 61.006 60.000 0.00 0.00 0.00 4.40
1904 6177 0.312102 TGAGCGTGACAGAGACAGTG 59.688 55.000 0.00 0.00 0.00 3.66
1905 6178 1.032794 TTGAGCGTGACAGAGACAGT 58.967 50.000 0.00 0.00 0.00 3.55
1916 6190 1.465689 CGGCTTGGTAAATTGAGCGTG 60.466 52.381 0.00 0.00 36.02 5.34
1966 6248 7.330900 TGAGGATTTAGGAAGAACTACTACG 57.669 40.000 0.00 0.00 0.00 3.51
1968 6250 9.716556 AGATTGAGGATTTAGGAAGAACTACTA 57.283 33.333 0.00 0.00 0.00 1.82
1987 6269 5.670149 AATTGAAGCGCTGATAGATTGAG 57.330 39.130 12.58 0.00 0.00 3.02
1988 6270 7.734924 ATAAATTGAAGCGCTGATAGATTGA 57.265 32.000 12.58 1.15 0.00 2.57
1991 6273 7.976135 AGAATAAATTGAAGCGCTGATAGAT 57.024 32.000 12.58 0.00 0.00 1.98
1994 6276 6.767902 AGGAAGAATAAATTGAAGCGCTGATA 59.232 34.615 12.58 0.00 0.00 2.15
1998 6280 5.415701 TGAAGGAAGAATAAATTGAAGCGCT 59.584 36.000 2.64 2.64 0.00 5.92
2004 6286 6.740693 TGGGGATGAAGGAAGAATAAATTGA 58.259 36.000 0.00 0.00 0.00 2.57
2023 6305 1.622607 AAGCGTCGATGGATTGGGGA 61.623 55.000 6.79 0.00 0.00 4.81
2038 6320 5.573282 CCTAGGTGATACATAAATCGAAGCG 59.427 44.000 0.00 0.00 0.00 4.68
2039 6321 6.456501 ACCTAGGTGATACATAAATCGAAGC 58.543 40.000 15.42 0.00 0.00 3.86
2056 6338 1.656587 TGCTTCCATGACACCTAGGT 58.343 50.000 9.21 9.21 0.00 3.08
2068 6351 1.649321 AGAGTCTCCACATGCTTCCA 58.351 50.000 0.00 0.00 0.00 3.53
2070 6353 2.797792 CGCTAGAGTCTCCACATGCTTC 60.798 54.545 0.00 0.00 0.00 3.86
2074 6357 2.949451 AACGCTAGAGTCTCCACATG 57.051 50.000 0.00 0.00 0.00 3.21
2075 6358 2.359531 GCTAACGCTAGAGTCTCCACAT 59.640 50.000 0.00 0.00 0.00 3.21
2080 6363 2.372148 GACGCTAACGCTAGAGTCTC 57.628 55.000 18.76 0.00 46.06 3.36
2115 6412 1.411651 GGGTGGAGCCTAGGCCTAAG 61.412 65.000 30.42 9.23 43.17 2.18
2127 6424 1.059913 ACTGTTCAAGGAGGGTGGAG 58.940 55.000 0.00 0.00 0.00 3.86
2131 6428 1.062488 AGCCACTGTTCAAGGAGGGT 61.062 55.000 0.00 0.00 32.84 4.34
2140 6437 1.603739 GGGTGGGAAGCCACTGTTC 60.604 63.158 0.00 0.00 40.24 3.18
2141 6438 2.520968 GGGTGGGAAGCCACTGTT 59.479 61.111 0.00 0.00 40.24 3.16
2153 6450 1.228429 TTTTTCTCTGCCGGGGTGG 60.228 57.895 2.18 0.00 42.50 4.61
2154 6451 1.524008 GGTTTTTCTCTGCCGGGGTG 61.524 60.000 2.18 0.00 0.00 4.61
2155 6452 1.228459 GGTTTTTCTCTGCCGGGGT 60.228 57.895 2.18 0.00 0.00 4.95
2156 6453 1.228429 TGGTTTTTCTCTGCCGGGG 60.228 57.895 2.18 0.00 0.00 5.73
2157 6454 1.852067 CGTGGTTTTTCTCTGCCGGG 61.852 60.000 2.18 0.00 0.00 5.73
2158 6455 0.882927 TCGTGGTTTTTCTCTGCCGG 60.883 55.000 0.00 0.00 0.00 6.13
2159 6456 0.512952 CTCGTGGTTTTTCTCTGCCG 59.487 55.000 0.00 0.00 0.00 5.69
2160 6457 1.801178 CTCTCGTGGTTTTTCTCTGCC 59.199 52.381 0.00 0.00 0.00 4.85
2161 6458 1.801178 CCTCTCGTGGTTTTTCTCTGC 59.199 52.381 0.00 0.00 0.00 4.26
2162 6459 2.037251 TCCCTCTCGTGGTTTTTCTCTG 59.963 50.000 0.00 0.00 0.00 3.35
2163 6460 2.300437 CTCCCTCTCGTGGTTTTTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
2164 6461 2.299297 TCTCCCTCTCGTGGTTTTTCTC 59.701 50.000 0.00 0.00 0.00 2.87
2165 6462 2.326428 TCTCCCTCTCGTGGTTTTTCT 58.674 47.619 0.00 0.00 0.00 2.52
2166 6463 2.833631 TCTCCCTCTCGTGGTTTTTC 57.166 50.000 0.00 0.00 0.00 2.29
2167 6464 3.118000 AGTTTCTCCCTCTCGTGGTTTTT 60.118 43.478 0.00 0.00 0.00 1.94
2168 6465 2.438392 AGTTTCTCCCTCTCGTGGTTTT 59.562 45.455 0.00 0.00 0.00 2.43
2169 6466 2.037381 GAGTTTCTCCCTCTCGTGGTTT 59.963 50.000 0.00 0.00 0.00 3.27
2170 6467 1.619332 GAGTTTCTCCCTCTCGTGGTT 59.381 52.381 0.00 0.00 0.00 3.67
2171 6468 1.203075 AGAGTTTCTCCCTCTCGTGGT 60.203 52.381 0.00 0.00 34.14 4.16
2172 6469 1.474879 GAGAGTTTCTCCCTCTCGTGG 59.525 57.143 2.02 0.00 43.87 4.94
2184 6481 5.666462 GGGAGAATGTTAGGAGAGAGTTTC 58.334 45.833 0.00 0.00 0.00 2.78
2196 6493 2.762327 GTGTACCTCCGGGAGAATGTTA 59.238 50.000 25.60 5.55 36.25 2.41
2197 6494 1.553704 GTGTACCTCCGGGAGAATGTT 59.446 52.381 25.60 6.48 36.25 2.71
2200 6497 1.041447 CCGTGTACCTCCGGGAGAAT 61.041 60.000 25.60 14.89 40.54 2.40
2202 6499 2.044650 CCGTGTACCTCCGGGAGA 60.045 66.667 25.60 3.19 40.54 3.71
2209 6506 4.139234 GTCGCCCCCGTGTACCTC 62.139 72.222 0.00 0.00 35.54 3.85
2218 6515 4.144703 GAACTCTCGGTCGCCCCC 62.145 72.222 0.00 0.00 0.00 5.40
2237 6534 3.663995 TTGAGGTTCAACAATGCATGG 57.336 42.857 0.00 0.00 30.26 3.66
2252 6549 2.159043 AGCCATGACGACTACATTGAGG 60.159 50.000 0.00 0.00 0.00 3.86
2262 6559 5.484173 TTTCATTAATCAGCCATGACGAC 57.516 39.130 0.00 0.00 38.57 4.34
2264 6561 5.883661 ACTTTTCATTAATCAGCCATGACG 58.116 37.500 0.00 0.00 38.57 4.35
2265 6562 7.315142 TGAACTTTTCATTAATCAGCCATGAC 58.685 34.615 0.00 0.00 34.61 3.06
2294 6592 4.312052 TGGGCATAGACCAAACGC 57.688 55.556 0.00 0.00 38.06 4.84
2303 6601 2.414785 GGGGCAACGTTGGGCATAG 61.415 63.158 28.33 2.69 37.60 2.23
2313 6611 1.006337 CAATGTTGGTGGGGCAACG 60.006 57.895 0.00 0.00 34.30 4.10
2351 6650 3.663995 TGCCAATGTTGACCAAATCTG 57.336 42.857 0.00 0.00 0.00 2.90
2354 6653 4.686191 TTCTTGCCAATGTTGACCAAAT 57.314 36.364 0.00 0.00 0.00 2.32
2358 6657 5.055812 TCATTTTTCTTGCCAATGTTGACC 58.944 37.500 0.00 0.00 31.08 4.02
2360 6659 7.804843 AATTCATTTTTCTTGCCAATGTTGA 57.195 28.000 0.00 0.00 31.08 3.18
2361 6660 8.991026 TCTAATTCATTTTTCTTGCCAATGTTG 58.009 29.630 0.00 0.00 31.08 3.33
2362 6661 9.211485 CTCTAATTCATTTTTCTTGCCAATGTT 57.789 29.630 0.00 0.00 31.08 2.71
2363 6662 8.370182 ACTCTAATTCATTTTTCTTGCCAATGT 58.630 29.630 0.00 0.00 31.08 2.71
2365 6664 9.211485 CAACTCTAATTCATTTTTCTTGCCAAT 57.789 29.630 0.00 0.00 0.00 3.16
2366 6665 7.656948 CCAACTCTAATTCATTTTTCTTGCCAA 59.343 33.333 0.00 0.00 0.00 4.52
2367 6666 7.153985 CCAACTCTAATTCATTTTTCTTGCCA 58.846 34.615 0.00 0.00 0.00 4.92
2368 6667 6.091305 GCCAACTCTAATTCATTTTTCTTGCC 59.909 38.462 0.00 0.00 0.00 4.52
2380 6690 8.940952 CCAATAAGCTATAGCCAACTCTAATTC 58.059 37.037 21.17 0.00 43.38 2.17
2383 6693 6.183361 TGCCAATAAGCTATAGCCAACTCTAA 60.183 38.462 21.17 0.00 43.38 2.10
2396 6706 4.710423 TTTTTCGCATGCCAATAAGCTA 57.290 36.364 13.15 0.00 0.00 3.32
2419 6729 0.615331 TTTGTTTGGGTTGCTGCCAA 59.385 45.000 0.00 0.00 0.00 4.52
2420 6730 0.177604 CTTTGTTTGGGTTGCTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
2425 6735 2.682155 TTGGTCTTTGTTTGGGTTGC 57.318 45.000 0.00 0.00 0.00 4.17
2429 6739 6.940831 AATCAAAATTGGTCTTTGTTTGGG 57.059 33.333 0.00 0.00 35.65 4.12
2430 6740 8.661352 AGTAATCAAAATTGGTCTTTGTTTGG 57.339 30.769 0.00 0.00 35.65 3.28
2458 6768 9.962783 CCCATTAATTGCTTTTGAAAAATCAAA 57.037 25.926 8.39 0.11 37.49 2.69
2459 6769 8.081025 GCCCATTAATTGCTTTTGAAAAATCAA 58.919 29.630 7.12 7.12 38.07 2.57
2460 6770 7.447853 AGCCCATTAATTGCTTTTGAAAAATCA 59.552 29.630 3.86 0.00 29.17 2.57
2461 6771 7.819644 AGCCCATTAATTGCTTTTGAAAAATC 58.180 30.769 3.86 0.00 29.17 2.17
2462 6772 7.764141 AGCCCATTAATTGCTTTTGAAAAAT 57.236 28.000 3.86 0.00 29.17 1.82
2463 6773 7.390162 CCTAGCCCATTAATTGCTTTTGAAAAA 59.610 33.333 13.01 0.00 36.57 1.94
2464 6774 6.878389 CCTAGCCCATTAATTGCTTTTGAAAA 59.122 34.615 13.01 0.00 36.57 2.29
2465 6775 6.405538 CCTAGCCCATTAATTGCTTTTGAAA 58.594 36.000 13.01 0.00 36.57 2.69
2466 6776 5.626578 GCCTAGCCCATTAATTGCTTTTGAA 60.627 40.000 13.01 0.00 36.57 2.69
2467 6777 4.141959 GCCTAGCCCATTAATTGCTTTTGA 60.142 41.667 13.01 0.00 36.57 2.69
2468 6778 4.122046 GCCTAGCCCATTAATTGCTTTTG 58.878 43.478 13.01 5.49 36.57 2.44
2469 6779 4.033009 AGCCTAGCCCATTAATTGCTTTT 58.967 39.130 13.01 0.00 36.57 2.27
2470 6780 3.646534 AGCCTAGCCCATTAATTGCTTT 58.353 40.909 13.01 0.00 36.57 3.51
2471 6781 3.319031 AGCCTAGCCCATTAATTGCTT 57.681 42.857 13.01 1.11 36.57 3.91
2472 6782 3.245052 CCTAGCCTAGCCCATTAATTGCT 60.245 47.826 12.53 12.53 39.10 3.91
2473 6783 3.084786 CCTAGCCTAGCCCATTAATTGC 58.915 50.000 0.00 0.00 0.00 3.56
2474 6784 4.074970 CACCTAGCCTAGCCCATTAATTG 58.925 47.826 0.00 0.00 0.00 2.32
2475 6785 3.980698 TCACCTAGCCTAGCCCATTAATT 59.019 43.478 0.00 0.00 0.00 1.40
2476 6786 3.598264 TCACCTAGCCTAGCCCATTAAT 58.402 45.455 0.00 0.00 0.00 1.40
2477 6787 3.054779 TCACCTAGCCTAGCCCATTAA 57.945 47.619 0.00 0.00 0.00 1.40
2478 6788 2.787339 TCACCTAGCCTAGCCCATTA 57.213 50.000 0.00 0.00 0.00 1.90
2479 6789 2.124560 ATCACCTAGCCTAGCCCATT 57.875 50.000 0.00 0.00 0.00 3.16
2480 6790 2.124560 AATCACCTAGCCTAGCCCAT 57.875 50.000 0.00 0.00 0.00 4.00
2481 6791 1.893315 AAATCACCTAGCCTAGCCCA 58.107 50.000 0.00 0.00 0.00 5.36
2482 6792 3.215151 GAAAAATCACCTAGCCTAGCCC 58.785 50.000 0.00 0.00 0.00 5.19
2483 6793 3.886123 TGAAAAATCACCTAGCCTAGCC 58.114 45.455 0.00 0.00 0.00 3.93
2484 6794 5.897377 TTTGAAAAATCACCTAGCCTAGC 57.103 39.130 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.