Multiple sequence alignment - TraesCS7B01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G351200 chr7B 100.000 3091 0 0 1 3091 608302600 608299510 0.000000e+00 5709.0
1 TraesCS7B01G351200 chr7B 87.682 755 82 4 1352 2099 40287313 40286563 0.000000e+00 869.0
2 TraesCS7B01G351200 chr7B 94.595 111 6 0 2927 3037 479997261 479997151 4.100000e-39 172.0
3 TraesCS7B01G351200 chr7B 93.023 43 2 1 573 614 392666779 392666821 9.260000e-06 62.1
4 TraesCS7B01G351200 chr7B 100.000 32 0 0 2526 2557 608300032 608300001 3.330000e-05 60.2
5 TraesCS7B01G351200 chr7B 100.000 32 0 0 2569 2600 608300075 608300044 3.330000e-05 60.2
6 TraesCS7B01G351200 chr7B 100.000 32 0 0 118 149 716394256 716394287 3.330000e-05 60.2
7 TraesCS7B01G351200 chr7A 90.991 2209 149 28 1 2184 644528333 644526150 0.000000e+00 2931.0
8 TraesCS7B01G351200 chr7A 86.376 756 86 10 1351 2093 90481088 90480337 0.000000e+00 809.0
9 TraesCS7B01G351200 chr7A 89.455 275 15 9 2266 2533 644526144 644525877 4.940000e-88 335.0
10 TraesCS7B01G351200 chr7A 91.388 209 16 2 2623 2831 644525912 644525706 5.040000e-73 285.0
11 TraesCS7B01G351200 chr7A 89.000 100 10 1 2832 2930 644525624 644525525 4.190000e-24 122.0
12 TraesCS7B01G351200 chr7A 94.737 57 3 0 3034 3090 644525529 644525473 4.250000e-14 89.8
13 TraesCS7B01G351200 chr7A 85.484 62 9 0 314 375 507237027 507236966 7.150000e-07 65.8
14 TraesCS7B01G351200 chr7D 92.286 1387 73 18 818 2187 560287204 560285835 0.000000e+00 1938.0
15 TraesCS7B01G351200 chr7D 88.400 500 45 8 329 823 560287883 560287392 9.550000e-165 590.0
16 TraesCS7B01G351200 chr7D 88.194 288 16 5 2264 2533 560285834 560285547 8.260000e-86 327.0
17 TraesCS7B01G351200 chr7D 92.241 116 9 0 2921 3036 58205441 58205556 6.860000e-37 165.0
18 TraesCS7B01G351200 chr7D 92.857 98 7 0 2832 2929 560285319 560285222 3.210000e-30 143.0
19 TraesCS7B01G351200 chr7D 96.552 58 2 0 3034 3091 560285225 560285168 2.540000e-16 97.1
20 TraesCS7B01G351200 chr7D 77.778 153 21 10 2632 2774 42193438 42193289 7.100000e-12 82.4
21 TraesCS7B01G351200 chr7D 92.857 42 2 1 573 613 5041248 5041207 3.330000e-05 60.2
22 TraesCS7B01G351200 chr3D 87.840 773 78 8 1334 2091 5862557 5863328 0.000000e+00 893.0
23 TraesCS7B01G351200 chr3D 83.421 760 110 13 1349 2097 5813300 5812546 0.000000e+00 691.0
24 TraesCS7B01G351200 chr3D 82.937 252 29 13 994 1238 5862008 5862252 6.710000e-52 215.0
25 TraesCS7B01G351200 chr3D 93.694 111 6 1 2925 3035 435646740 435646849 6.860000e-37 165.0
26 TraesCS7B01G351200 chr3D 79.268 164 21 10 2632 2785 5811986 5811826 5.450000e-18 102.0
27 TraesCS7B01G351200 chr3D 72.569 288 51 23 88 373 438467686 438467425 5.530000e-08 69.4
28 TraesCS7B01G351200 chrUn 87.199 789 72 17 1334 2096 40584306 40583521 0.000000e+00 870.0
29 TraesCS7B01G351200 chrUn 90.244 82 7 1 2848 2929 35839676 35839596 4.220000e-19 106.0
30 TraesCS7B01G351200 chrUn 90.000 80 8 0 2847 2926 36479164 36479243 1.520000e-18 104.0
31 TraesCS7B01G351200 chrUn 87.234 47 6 0 2700 2746 40582864 40582818 2.000000e-03 54.7
32 TraesCS7B01G351200 chr3B 87.766 752 70 12 1360 2091 11660046 11659297 0.000000e+00 859.0
33 TraesCS7B01G351200 chr3B 81.818 275 26 15 994 1254 11660460 11660196 3.120000e-50 209.0
34 TraesCS7B01G351200 chr3B 88.976 127 13 1 2922 3047 217773282 217773156 4.130000e-34 156.0
35 TraesCS7B01G351200 chr3B 90.000 80 8 0 2847 2926 11956771 11956692 1.520000e-18 104.0
36 TraesCS7B01G351200 chr3B 83.200 125 10 9 612 735 659457327 659457441 1.520000e-18 104.0
37 TraesCS7B01G351200 chr3B 82.301 113 12 6 612 724 448682894 448682998 1.180000e-14 91.6
38 TraesCS7B01G351200 chr3B 82.143 112 12 7 612 723 713550077 713550180 4.250000e-14 89.8
39 TraesCS7B01G351200 chr3A 87.994 683 72 7 1364 2038 15303564 15302884 0.000000e+00 798.0
40 TraesCS7B01G351200 chr3A 95.312 64 3 0 2863 2926 15433852 15433915 5.450000e-18 102.0
41 TraesCS7B01G351200 chr3A 79.054 148 17 9 2623 2765 15433384 15433522 4.250000e-14 89.8
42 TraesCS7B01G351200 chr1D 84.375 224 23 7 994 1216 394274444 394274656 3.120000e-50 209.0
43 TraesCS7B01G351200 chr2B 94.737 114 6 0 2922 3035 146781068 146781181 8.810000e-41 178.0
44 TraesCS7B01G351200 chr2B 94.545 110 6 0 2926 3035 682917329 682917438 1.470000e-38 171.0
45 TraesCS7B01G351200 chr2B 87.619 105 11 2 1120 1224 44381937 44382039 1.510000e-23 121.0
46 TraesCS7B01G351200 chr2B 95.556 45 1 1 574 617 454012459 454012415 1.540000e-08 71.3
47 TraesCS7B01G351200 chr6B 92.982 114 6 2 2920 3032 679639509 679639397 6.860000e-37 165.0
48 TraesCS7B01G351200 chr6B 76.503 183 41 2 36 216 633871064 633871246 7.050000e-17 99.0
49 TraesCS7B01G351200 chr1B 93.636 110 7 0 2926 3035 661509422 661509313 6.860000e-37 165.0
50 TraesCS7B01G351200 chr1B 89.623 106 10 1 1119 1224 625436685 625436581 1.930000e-27 134.0
51 TraesCS7B01G351200 chr5B 89.231 130 14 0 2906 3035 145479124 145479253 2.470000e-36 163.0
52 TraesCS7B01G351200 chr5B 89.524 105 10 1 1120 1224 521345887 521345990 6.950000e-27 132.0
53 TraesCS7B01G351200 chr5B 83.929 112 11 5 612 723 655662653 655662757 1.960000e-17 100.0
54 TraesCS7B01G351200 chr5B 87.013 77 10 0 119 195 544325476 544325400 1.530000e-13 87.9
55 TraesCS7B01G351200 chr4D 79.079 239 31 11 2273 2493 12159354 12159117 2.480000e-31 147.0
56 TraesCS7B01G351200 chr4D 90.099 101 9 1 1120 1220 444094170 444094269 2.500000e-26 130.0
57 TraesCS7B01G351200 chr4D 97.297 37 0 1 578 613 50068417 50068453 9.260000e-06 62.1
58 TraesCS7B01G351200 chr2A 73.186 317 78 6 39 351 431581461 431581774 1.170000e-19 108.0
59 TraesCS7B01G351200 chr5D 78.523 149 31 1 64 211 459570761 459570613 2.540000e-16 97.1
60 TraesCS7B01G351200 chr5D 97.778 45 0 1 574 617 404259016 404258972 3.310000e-10 76.8
61 TraesCS7B01G351200 chr5D 81.188 101 14 4 2690 2789 493686738 493686834 3.310000e-10 76.8
62 TraesCS7B01G351200 chr4B 82.143 112 12 6 612 723 525559249 525559146 4.250000e-14 89.8
63 TraesCS7B01G351200 chr2D 95.556 45 1 1 574 617 383553884 383553840 1.540000e-08 71.3
64 TraesCS7B01G351200 chr2D 94.872 39 1 1 575 612 633848941 633848903 3.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G351200 chr7B 608299510 608302600 3090 True 1943.133333 5709 100.0000 1 3091 3 chr7B.!!$R3 3090
1 TraesCS7B01G351200 chr7B 40286563 40287313 750 True 869.000000 869 87.6820 1352 2099 1 chr7B.!!$R1 747
2 TraesCS7B01G351200 chr7A 90480337 90481088 751 True 809.000000 809 86.3760 1351 2093 1 chr7A.!!$R1 742
3 TraesCS7B01G351200 chr7A 644525473 644528333 2860 True 752.560000 2931 91.1142 1 3090 5 chr7A.!!$R3 3089
4 TraesCS7B01G351200 chr7D 560285168 560287883 2715 True 619.020000 1938 91.6578 329 3091 5 chr7D.!!$R3 2762
5 TraesCS7B01G351200 chr3D 5862008 5863328 1320 False 554.000000 893 85.3885 994 2091 2 chr3D.!!$F2 1097
6 TraesCS7B01G351200 chr3D 5811826 5813300 1474 True 396.500000 691 81.3445 1349 2785 2 chr3D.!!$R2 1436
7 TraesCS7B01G351200 chrUn 40582818 40584306 1488 True 462.350000 870 87.2165 1334 2746 2 chrUn.!!$R2 1412
8 TraesCS7B01G351200 chr3B 11659297 11660460 1163 True 534.000000 859 84.7920 994 2091 2 chr3B.!!$R3 1097
9 TraesCS7B01G351200 chr3A 15302884 15303564 680 True 798.000000 798 87.9940 1364 2038 1 chr3A.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 182 0.034896 GTCGCCAGGGAAGAGAAACA 59.965 55.0 0.00 0.0 0.0 2.83 F
227 229 0.459585 ACATGTACGCGGATGGACAC 60.460 55.0 12.47 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2545 0.904865 TTCACTGCATCCTCCTCGGT 60.905 55.000 0.0 0.0 0.0 4.69 R
2093 2566 1.871676 CAGAAGATCATGGACCGCATG 59.128 52.381 0.0 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.881796 GGCCAACAACTACAAGGAGC 59.118 55.000 0.00 0.00 0.00 4.70
47 48 1.968493 ACAACTACAAGGAGCCGAAGA 59.032 47.619 0.00 0.00 0.00 2.87
48 49 2.567615 ACAACTACAAGGAGCCGAAGAT 59.432 45.455 0.00 0.00 0.00 2.40
57 58 0.462581 GAGCCGAAGATGCACCATCA 60.463 55.000 7.83 0.00 42.72 3.07
76 77 2.237143 TCATCGTTGCCCTTCTCTCATT 59.763 45.455 0.00 0.00 0.00 2.57
78 79 1.623311 TCGTTGCCCTTCTCTCATTGA 59.377 47.619 0.00 0.00 0.00 2.57
80 81 2.813754 CGTTGCCCTTCTCTCATTGAAA 59.186 45.455 0.00 0.00 0.00 2.69
123 125 4.474226 AGAAATCAAGAAGTTGTCGTGC 57.526 40.909 0.00 0.00 35.86 5.34
124 126 4.130118 AGAAATCAAGAAGTTGTCGTGCT 58.870 39.130 0.00 0.00 35.86 4.40
150 152 3.884774 AAAGGGCCAGCACACCGA 61.885 61.111 6.18 0.00 0.00 4.69
165 167 0.375803 ACCGAAACAACAACTGTCGC 59.624 50.000 0.00 0.00 37.23 5.19
167 169 0.375454 CGAAACAACAACTGTCGCCA 59.625 50.000 0.00 0.00 37.23 5.69
169 171 0.738389 AAACAACAACTGTCGCCAGG 59.262 50.000 0.00 0.00 43.36 4.45
180 182 0.034896 GTCGCCAGGGAAGAGAAACA 59.965 55.000 0.00 0.00 0.00 2.83
183 185 2.168521 TCGCCAGGGAAGAGAAACATAG 59.831 50.000 0.00 0.00 0.00 2.23
221 223 2.669434 GTGTAAACACATGTACGCGGAT 59.331 45.455 12.47 0.00 45.75 4.18
223 225 1.083489 AAACACATGTACGCGGATGG 58.917 50.000 12.47 6.53 0.00 3.51
227 229 0.459585 ACATGTACGCGGATGGACAC 60.460 55.000 12.47 0.00 0.00 3.67
234 236 1.448540 GCGGATGGACACAGACCAG 60.449 63.158 0.00 0.00 40.89 4.00
247 249 4.520492 ACACAGACCAGATCCAAACAAATC 59.480 41.667 0.00 0.00 0.00 2.17
262 264 7.992033 TCCAAACAAATCCATCAAAGACAAATT 59.008 29.630 0.00 0.00 0.00 1.82
264 266 7.967890 AACAAATCCATCAAAGACAAATTCC 57.032 32.000 0.00 0.00 0.00 3.01
269 271 3.505680 CCATCAAAGACAAATTCCGACCA 59.494 43.478 0.00 0.00 0.00 4.02
271 273 5.508825 CCATCAAAGACAAATTCCGACCAAA 60.509 40.000 0.00 0.00 0.00 3.28
355 357 4.417426 GGGACGAGGGATAGATGAAAAA 57.583 45.455 0.00 0.00 0.00 1.94
389 391 8.601845 TTCATCTTTAGAAAATCGTCACTTCA 57.398 30.769 0.00 0.00 0.00 3.02
440 442 4.936411 TCCGGACGCATTAAGAACATTTAA 59.064 37.500 0.00 0.00 0.00 1.52
449 451 7.962917 GCATTAAGAACATTTAATGTGGTTGG 58.037 34.615 11.60 4.59 45.90 3.77
557 563 5.123227 TCTTCGTTGTCCTTTTCAAGATGT 58.877 37.500 0.00 0.00 0.00 3.06
711 718 6.889301 ATTGTTCTATGGCAATACATGAGG 57.111 37.500 0.00 0.00 34.01 3.86
728 735 9.823647 ATACATGAGGATTCAACTAGTTTAGTG 57.176 33.333 5.07 0.00 39.39 2.74
729 736 7.680730 ACATGAGGATTCAACTAGTTTAGTGT 58.319 34.615 5.07 0.00 39.39 3.55
748 755 9.890629 TTTAGTGTATAAGAGCAAATCTCACAT 57.109 29.630 0.00 0.00 44.35 3.21
855 1058 4.323417 TGCACGGACTCAAATTATTGTCT 58.677 39.130 0.00 0.00 37.79 3.41
868 1071 8.576442 TCAAATTATTGTCTCAGTTTCTTTCCC 58.424 33.333 0.00 0.00 37.79 3.97
873 1076 5.835113 TGTCTCAGTTTCTTTCCCTTTTG 57.165 39.130 0.00 0.00 0.00 2.44
887 1090 2.450476 CCTTTTGGGTATTGCTCTGCT 58.550 47.619 0.00 0.00 35.46 4.24
891 1094 1.077501 GGGTATTGCTCTGCTGGCA 60.078 57.895 3.29 3.29 37.97 4.92
906 1109 2.824041 GCACCACATTCCGGCGAT 60.824 61.111 9.30 0.00 0.00 4.58
907 1110 3.101209 CACCACATTCCGGCGATG 58.899 61.111 9.30 7.88 0.00 3.84
1100 1319 4.899239 GATGCAGGACGGAGGCGG 62.899 72.222 0.00 0.00 0.00 6.13
1228 1447 0.905357 CCCCGTCTTCAAGGTCATCT 59.095 55.000 0.00 0.00 0.00 2.90
1292 1555 3.305720 GGAAAGAACCCAAAAACCCTCT 58.694 45.455 0.00 0.00 0.00 3.69
1315 1578 5.138125 TCCCATCTCACTTTTTGATTTGC 57.862 39.130 0.00 0.00 32.17 3.68
1318 1656 5.484715 CCATCTCACTTTTTGATTTGCCAT 58.515 37.500 0.00 0.00 32.17 4.40
1322 1660 5.667129 CTCACTTTTTGATTTGCCATCGGC 61.667 45.833 0.00 0.00 40.80 5.54
1674 2119 3.740397 CCGTCACGGTCCGCTACA 61.740 66.667 8.54 0.00 42.73 2.74
1883 2334 1.227823 CGGCAACAACAGGGACAGA 60.228 57.895 0.00 0.00 0.00 3.41
2028 2480 1.287191 CGCATCGATCTGATCCGGT 59.713 57.895 11.84 1.28 34.53 5.28
2072 2545 0.396435 CAACACCACAGGCTAGGACA 59.604 55.000 11.70 0.00 0.00 4.02
2093 2566 0.809241 CGAGGAGGATGCAGTGAAGC 60.809 60.000 0.00 0.00 0.00 3.86
2118 2593 2.559440 GGTCCATGATCTTCTGCACTC 58.441 52.381 0.00 0.00 0.00 3.51
2160 2939 3.886505 AGACTATGAGCTGTGTAGGTAGC 59.113 47.826 0.00 0.00 40.18 3.58
2168 2990 3.769844 AGCTGTGTAGGTAGCAGTAATGT 59.230 43.478 0.00 0.00 42.29 2.71
2187 3009 8.033626 AGTAATGTAGCTACTGGTTTGTACTTC 58.966 37.037 23.84 0.00 0.00 3.01
2188 3010 5.143376 TGTAGCTACTGGTTTGTACTTCC 57.857 43.478 23.84 0.00 0.00 3.46
2193 3015 4.262506 GCTACTGGTTTGTACTTCCTCTGT 60.263 45.833 0.00 0.00 0.00 3.41
2194 3016 4.772886 ACTGGTTTGTACTTCCTCTGTT 57.227 40.909 0.00 0.00 0.00 3.16
2196 3018 5.123936 ACTGGTTTGTACTTCCTCTGTTTC 58.876 41.667 0.00 0.00 0.00 2.78
2198 3020 5.690865 TGGTTTGTACTTCCTCTGTTTCAT 58.309 37.500 0.00 0.00 0.00 2.57
2199 3021 6.833041 TGGTTTGTACTTCCTCTGTTTCATA 58.167 36.000 0.00 0.00 0.00 2.15
2200 3022 7.284074 TGGTTTGTACTTCCTCTGTTTCATAA 58.716 34.615 0.00 0.00 0.00 1.90
2201 3023 7.227910 TGGTTTGTACTTCCTCTGTTTCATAAC 59.772 37.037 0.00 0.00 34.75 1.89
2202 3024 7.288672 GTTTGTACTTCCTCTGTTTCATAACG 58.711 38.462 0.00 0.00 37.06 3.18
2203 3025 6.092955 TGTACTTCCTCTGTTTCATAACGT 57.907 37.500 0.00 0.00 37.06 3.99
2204 3026 7.218228 TGTACTTCCTCTGTTTCATAACGTA 57.782 36.000 0.00 0.00 37.06 3.57
2205 3027 7.660112 TGTACTTCCTCTGTTTCATAACGTAA 58.340 34.615 0.00 0.00 37.06 3.18
2207 3029 6.989659 ACTTCCTCTGTTTCATAACGTAAGA 58.010 36.000 0.00 0.00 43.62 2.10
2208 3030 6.867293 ACTTCCTCTGTTTCATAACGTAAGAC 59.133 38.462 0.00 0.00 43.62 3.01
2223 3045 5.817616 CGTAAGACGTTTTCTCAAGCTAA 57.182 39.130 0.00 0.00 43.02 3.09
2224 3046 6.390987 CGTAAGACGTTTTCTCAAGCTAAT 57.609 37.500 0.00 0.00 43.02 1.73
2225 3047 7.502177 CGTAAGACGTTTTCTCAAGCTAATA 57.498 36.000 0.00 0.00 43.02 0.98
2226 3048 8.116624 CGTAAGACGTTTTCTCAAGCTAATAT 57.883 34.615 0.00 0.00 43.02 1.28
2227 3049 8.592998 CGTAAGACGTTTTCTCAAGCTAATATT 58.407 33.333 0.00 0.00 43.02 1.28
2228 3050 9.690434 GTAAGACGTTTTCTCAAGCTAATATTG 57.310 33.333 0.00 0.00 31.02 1.90
2229 3051 6.776094 AGACGTTTTCTCAAGCTAATATTGC 58.224 36.000 0.00 0.09 0.00 3.56
2230 3052 6.595716 AGACGTTTTCTCAAGCTAATATTGCT 59.404 34.615 0.00 2.54 43.32 3.91
2242 3064 7.529880 AGCTAATATTGCTTGCAAAAACATC 57.470 32.000 12.17 1.89 37.52 3.06
2243 3065 7.325694 AGCTAATATTGCTTGCAAAAACATCT 58.674 30.769 12.17 3.95 37.52 2.90
2244 3066 8.469200 AGCTAATATTGCTTGCAAAAACATCTA 58.531 29.630 12.17 0.00 37.52 1.98
2245 3067 9.086336 GCTAATATTGCTTGCAAAAACATCTAA 57.914 29.630 12.17 0.00 0.00 2.10
2247 3069 8.830201 AATATTGCTTGCAAAAACATCTAACA 57.170 26.923 12.17 0.00 0.00 2.41
2248 3070 9.439500 AATATTGCTTGCAAAAACATCTAACAT 57.561 25.926 12.17 0.00 0.00 2.71
2249 3071 7.733402 ATTGCTTGCAAAAACATCTAACATT 57.267 28.000 12.17 0.00 0.00 2.71
2250 3072 6.528014 TGCTTGCAAAAACATCTAACATTG 57.472 33.333 0.00 0.00 0.00 2.82
2251 3073 6.047870 TGCTTGCAAAAACATCTAACATTGT 58.952 32.000 0.00 0.00 0.00 2.71
2252 3074 7.205992 TGCTTGCAAAAACATCTAACATTGTA 58.794 30.769 0.00 0.00 0.00 2.41
2253 3075 7.381948 TGCTTGCAAAAACATCTAACATTGTAG 59.618 33.333 0.00 0.00 0.00 2.74
2254 3076 7.148755 GCTTGCAAAAACATCTAACATTGTAGG 60.149 37.037 0.00 0.00 0.00 3.18
2255 3077 7.517614 TGCAAAAACATCTAACATTGTAGGA 57.482 32.000 0.00 0.00 0.00 2.94
2256 3078 7.592938 TGCAAAAACATCTAACATTGTAGGAG 58.407 34.615 0.00 0.00 0.00 3.69
2257 3079 7.029563 GCAAAAACATCTAACATTGTAGGAGG 58.970 38.462 0.00 0.00 0.00 4.30
2258 3080 7.538575 CAAAAACATCTAACATTGTAGGAGGG 58.461 38.462 0.00 0.00 0.00 4.30
2259 3081 6.636454 AAACATCTAACATTGTAGGAGGGA 57.364 37.500 0.00 0.00 0.00 4.20
2260 3082 5.878406 ACATCTAACATTGTAGGAGGGAG 57.122 43.478 0.00 0.00 0.00 4.30
2261 3083 4.656112 ACATCTAACATTGTAGGAGGGAGG 59.344 45.833 0.00 0.00 0.00 4.30
2262 3084 3.654273 TCTAACATTGTAGGAGGGAGGG 58.346 50.000 0.00 0.00 0.00 4.30
2297 3132 1.955778 TGAGTGAGTGCAACCAATTGG 59.044 47.619 23.31 23.31 37.80 3.16
2326 3161 2.182827 TGGAGATCCTGAACCAGAGTG 58.817 52.381 0.00 0.00 36.82 3.51
2408 3251 5.863935 CCATTTTGTTCTAGCTGCTTTTACC 59.136 40.000 7.79 0.00 0.00 2.85
2440 3294 3.189287 CAGGTTGTTCATGTTCAGGTAGC 59.811 47.826 0.00 0.00 0.00 3.58
2458 3327 4.497966 GGTAGCGTTTTGTTCACAAGAAAC 59.502 41.667 0.00 0.00 37.15 2.78
2536 3417 9.653287 TGTATCATTCTACAAAACTAACAGAGG 57.347 33.333 0.00 0.00 0.00 3.69
2537 3418 9.099454 GTATCATTCTACAAAACTAACAGAGGG 57.901 37.037 0.00 0.00 0.00 4.30
2538 3419 7.311092 TCATTCTACAAAACTAACAGAGGGA 57.689 36.000 0.00 0.00 0.00 4.20
2539 3420 7.386851 TCATTCTACAAAACTAACAGAGGGAG 58.613 38.462 0.00 0.00 0.00 4.30
2540 3421 6.742559 TTCTACAAAACTAACAGAGGGAGT 57.257 37.500 0.00 0.00 0.00 3.85
2541 3422 7.844493 TTCTACAAAACTAACAGAGGGAGTA 57.156 36.000 0.00 0.00 0.00 2.59
2542 3423 7.224522 TCTACAAAACTAACAGAGGGAGTAC 57.775 40.000 0.00 0.00 0.00 2.73
2543 3424 5.881923 ACAAAACTAACAGAGGGAGTACA 57.118 39.130 0.00 0.00 0.00 2.90
2544 3425 6.243216 ACAAAACTAACAGAGGGAGTACAA 57.757 37.500 0.00 0.00 0.00 2.41
2545 3426 6.655930 ACAAAACTAACAGAGGGAGTACAAA 58.344 36.000 0.00 0.00 0.00 2.83
2546 3427 6.541278 ACAAAACTAACAGAGGGAGTACAAAC 59.459 38.462 0.00 0.00 0.00 2.93
2547 3428 4.886496 ACTAACAGAGGGAGTACAAACC 57.114 45.455 0.00 0.00 0.00 3.27
2548 3429 4.228824 ACTAACAGAGGGAGTACAAACCA 58.771 43.478 0.00 0.00 0.00 3.67
2549 3430 3.771577 AACAGAGGGAGTACAAACCAG 57.228 47.619 0.00 0.00 0.00 4.00
2550 3431 2.690840 ACAGAGGGAGTACAAACCAGT 58.309 47.619 0.00 0.00 0.00 4.00
2551 3432 3.853207 ACAGAGGGAGTACAAACCAGTA 58.147 45.455 0.00 0.00 0.00 2.74
2552 3433 3.833070 ACAGAGGGAGTACAAACCAGTAG 59.167 47.826 0.00 0.00 0.00 2.57
2553 3434 2.832733 AGAGGGAGTACAAACCAGTAGC 59.167 50.000 0.00 0.00 0.00 3.58
2554 3435 2.832733 GAGGGAGTACAAACCAGTAGCT 59.167 50.000 0.00 0.00 0.00 3.32
2555 3436 4.021916 GAGGGAGTACAAACCAGTAGCTA 58.978 47.826 0.00 0.00 0.00 3.32
2556 3437 3.768215 AGGGAGTACAAACCAGTAGCTAC 59.232 47.826 16.43 16.43 0.00 3.58
2557 3438 3.512724 GGGAGTACAAACCAGTAGCTACA 59.487 47.826 25.28 0.00 0.00 2.74
2558 3439 4.161754 GGGAGTACAAACCAGTAGCTACAT 59.838 45.833 25.28 8.00 0.00 2.29
2559 3440 5.338137 GGGAGTACAAACCAGTAGCTACATT 60.338 44.000 25.28 13.42 0.00 2.71
2560 3441 6.171213 GGAGTACAAACCAGTAGCTACATTT 58.829 40.000 25.28 18.00 0.00 2.32
2561 3442 7.325694 GGAGTACAAACCAGTAGCTACATTTA 58.674 38.462 25.28 6.65 0.00 1.40
2562 3443 7.985752 GGAGTACAAACCAGTAGCTACATTTAT 59.014 37.037 25.28 13.77 0.00 1.40
2563 3444 8.943909 AGTACAAACCAGTAGCTACATTTATC 57.056 34.615 25.28 13.92 0.00 1.75
2564 3445 8.759782 AGTACAAACCAGTAGCTACATTTATCT 58.240 33.333 25.28 15.41 0.00 1.98
2565 3446 7.849804 ACAAACCAGTAGCTACATTTATCTG 57.150 36.000 25.28 12.54 0.00 2.90
2566 3447 7.620880 ACAAACCAGTAGCTACATTTATCTGA 58.379 34.615 25.28 0.00 0.00 3.27
2567 3448 7.766278 ACAAACCAGTAGCTACATTTATCTGAG 59.234 37.037 25.28 11.33 0.00 3.35
2568 3449 7.661536 AACCAGTAGCTACATTTATCTGAGA 57.338 36.000 25.28 0.00 0.00 3.27
2569 3450 7.661536 ACCAGTAGCTACATTTATCTGAGAA 57.338 36.000 25.28 0.00 0.00 2.87
2570 3451 7.493367 ACCAGTAGCTACATTTATCTGAGAAC 58.507 38.462 25.28 0.00 0.00 3.01
2571 3452 7.343316 ACCAGTAGCTACATTTATCTGAGAACT 59.657 37.037 25.28 0.00 0.00 3.01
2572 3453 8.851145 CCAGTAGCTACATTTATCTGAGAACTA 58.149 37.037 25.28 0.00 0.00 2.24
2577 3458 8.972127 AGCTACATTTATCTGAGAACTAACAGA 58.028 33.333 0.00 0.00 45.19 3.41
2578 3459 9.243637 GCTACATTTATCTGAGAACTAACAGAG 57.756 37.037 0.00 0.00 44.50 3.35
2579 3460 9.743057 CTACATTTATCTGAGAACTAACAGAGG 57.257 37.037 0.00 0.00 44.50 3.69
2580 3461 7.560368 ACATTTATCTGAGAACTAACAGAGGG 58.440 38.462 0.00 0.00 44.50 4.30
2581 3462 7.400339 ACATTTATCTGAGAACTAACAGAGGGA 59.600 37.037 0.00 0.00 44.50 4.20
2582 3463 7.411486 TTTATCTGAGAACTAACAGAGGGAG 57.589 40.000 0.00 0.00 44.50 4.30
2583 3464 4.390129 TCTGAGAACTAACAGAGGGAGT 57.610 45.455 0.00 0.00 38.08 3.85
2584 3465 5.516059 TCTGAGAACTAACAGAGGGAGTA 57.484 43.478 0.00 0.00 38.08 2.59
2585 3466 5.254901 TCTGAGAACTAACAGAGGGAGTAC 58.745 45.833 0.00 0.00 38.08 2.73
2586 3467 4.994282 TGAGAACTAACAGAGGGAGTACA 58.006 43.478 0.00 0.00 0.00 2.90
2587 3468 5.391256 TGAGAACTAACAGAGGGAGTACAA 58.609 41.667 0.00 0.00 0.00 2.41
2588 3469 5.836898 TGAGAACTAACAGAGGGAGTACAAA 59.163 40.000 0.00 0.00 0.00 2.83
2589 3470 6.099159 AGAACTAACAGAGGGAGTACAAAC 57.901 41.667 0.00 0.00 0.00 2.93
2590 3471 4.886496 ACTAACAGAGGGAGTACAAACC 57.114 45.455 0.00 0.00 0.00 3.27
2591 3472 4.228824 ACTAACAGAGGGAGTACAAACCA 58.771 43.478 0.00 0.00 0.00 3.67
2592 3473 3.771577 AACAGAGGGAGTACAAACCAG 57.228 47.619 0.00 0.00 0.00 4.00
2593 3474 2.690840 ACAGAGGGAGTACAAACCAGT 58.309 47.619 0.00 0.00 0.00 4.00
2594 3475 3.853207 ACAGAGGGAGTACAAACCAGTA 58.147 45.455 0.00 0.00 0.00 2.74
2595 3476 3.833070 ACAGAGGGAGTACAAACCAGTAG 59.167 47.826 0.00 0.00 0.00 2.57
2596 3477 2.832733 AGAGGGAGTACAAACCAGTAGC 59.167 50.000 0.00 0.00 0.00 3.58
2597 3478 2.832733 GAGGGAGTACAAACCAGTAGCT 59.167 50.000 0.00 0.00 0.00 3.32
2598 3479 4.021916 GAGGGAGTACAAACCAGTAGCTA 58.978 47.826 0.00 0.00 0.00 3.32
2599 3480 3.768215 AGGGAGTACAAACCAGTAGCTAC 59.232 47.826 16.43 16.43 0.00 3.58
2600 3481 3.768215 GGGAGTACAAACCAGTAGCTACT 59.232 47.826 20.95 20.95 36.90 2.57
2601 3482 4.952335 GGGAGTACAAACCAGTAGCTACTA 59.048 45.833 25.63 6.12 34.13 1.82
2602 3483 5.420104 GGGAGTACAAACCAGTAGCTACTAA 59.580 44.000 25.63 3.63 34.13 2.24
2603 3484 6.328714 GGAGTACAAACCAGTAGCTACTAAC 58.671 44.000 25.63 14.08 34.13 2.34
2604 3485 6.071728 GGAGTACAAACCAGTAGCTACTAACA 60.072 42.308 25.63 4.96 34.13 2.41
2605 3486 6.921914 AGTACAAACCAGTAGCTACTAACAG 58.078 40.000 25.63 16.32 34.13 3.16
2606 3487 5.148651 ACAAACCAGTAGCTACTAACAGG 57.851 43.478 25.63 22.92 34.13 4.00
2607 3488 4.020485 ACAAACCAGTAGCTACTAACAGGG 60.020 45.833 25.63 22.57 34.13 4.45
2608 3489 2.748388 ACCAGTAGCTACTAACAGGGG 58.252 52.381 25.63 21.91 34.13 4.79
2609 3490 2.040178 CCAGTAGCTACTAACAGGGGG 58.960 57.143 25.63 16.54 34.13 5.40
2610 3491 2.358932 CCAGTAGCTACTAACAGGGGGA 60.359 54.545 25.63 0.00 34.13 4.81
2611 3492 2.959707 CAGTAGCTACTAACAGGGGGAG 59.040 54.545 25.63 6.14 34.13 4.30
2612 3493 2.586368 AGTAGCTACTAACAGGGGGAGT 59.414 50.000 24.97 0.00 34.13 3.85
2613 3494 3.790408 AGTAGCTACTAACAGGGGGAGTA 59.210 47.826 24.97 0.00 34.13 2.59
2614 3495 3.029483 AGCTACTAACAGGGGGAGTAC 57.971 52.381 0.00 0.00 0.00 2.73
2615 3496 2.313945 AGCTACTAACAGGGGGAGTACA 59.686 50.000 0.00 0.00 0.00 2.90
2616 3497 3.102204 GCTACTAACAGGGGGAGTACAA 58.898 50.000 0.00 0.00 0.00 2.41
2617 3498 3.516700 GCTACTAACAGGGGGAGTACAAA 59.483 47.826 0.00 0.00 0.00 2.83
2618 3499 4.622457 GCTACTAACAGGGGGAGTACAAAC 60.622 50.000 0.00 0.00 0.00 2.93
2619 3500 2.641321 ACTAACAGGGGGAGTACAAACC 59.359 50.000 0.00 0.00 0.00 3.27
2620 3501 1.525175 AACAGGGGGAGTACAAACCA 58.475 50.000 0.00 0.00 0.00 3.67
2621 3502 1.755200 ACAGGGGGAGTACAAACCAT 58.245 50.000 0.00 0.00 0.00 3.55
2622 3503 2.923908 ACAGGGGGAGTACAAACCATA 58.076 47.619 0.00 0.00 0.00 2.74
2623 3504 2.844348 ACAGGGGGAGTACAAACCATAG 59.156 50.000 0.00 0.00 0.00 2.23
2624 3505 3.112263 CAGGGGGAGTACAAACCATAGA 58.888 50.000 0.00 0.00 0.00 1.98
2625 3506 3.716872 CAGGGGGAGTACAAACCATAGAT 59.283 47.826 0.00 0.00 0.00 1.98
2626 3507 3.716872 AGGGGGAGTACAAACCATAGATG 59.283 47.826 0.00 0.00 0.00 2.90
2627 3508 3.477530 GGGGAGTACAAACCATAGATGC 58.522 50.000 0.00 0.00 0.00 3.91
2628 3509 3.118038 GGGGAGTACAAACCATAGATGCA 60.118 47.826 0.00 0.00 0.00 3.96
2629 3510 4.446311 GGGGAGTACAAACCATAGATGCAT 60.446 45.833 0.00 0.00 0.00 3.96
2630 3511 4.757149 GGGAGTACAAACCATAGATGCATC 59.243 45.833 19.37 19.37 0.00 3.91
2631 3512 5.455326 GGGAGTACAAACCATAGATGCATCT 60.455 44.000 30.85 30.85 40.86 2.90
2632 3513 6.239600 GGGAGTACAAACCATAGATGCATCTA 60.240 42.308 32.86 32.86 43.00 1.98
2633 3514 7.217200 GGAGTACAAACCATAGATGCATCTAA 58.783 38.462 33.98 20.43 42.20 2.10
2634 3515 7.715249 GGAGTACAAACCATAGATGCATCTAAA 59.285 37.037 33.98 19.47 42.20 1.85
2635 3516 9.277783 GAGTACAAACCATAGATGCATCTAAAT 57.722 33.333 33.98 20.76 42.20 1.40
2636 3517 9.060347 AGTACAAACCATAGATGCATCTAAATG 57.940 33.333 33.98 28.53 42.20 2.32
2637 3518 7.886629 ACAAACCATAGATGCATCTAAATGT 57.113 32.000 33.98 27.58 42.20 2.71
2638 3519 8.978874 ACAAACCATAGATGCATCTAAATGTA 57.021 30.769 33.98 17.36 42.20 2.29
2639 3520 9.578576 ACAAACCATAGATGCATCTAAATGTAT 57.421 29.630 33.98 18.74 42.20 2.29
2650 3531 9.961265 ATGCATCTAAATGTATCATTTCACAAG 57.039 29.630 10.35 4.36 33.47 3.16
2651 3532 9.176460 TGCATCTAAATGTATCATTTCACAAGA 57.824 29.630 10.35 8.69 35.18 3.02
2670 3551 9.597170 TCACAAGAAATGAACATCAATTTTTCA 57.403 25.926 7.34 0.00 29.78 2.69
2727 3643 0.329261 TGGACCTGATGCTCAAAGGG 59.671 55.000 0.00 0.00 35.24 3.95
2750 3666 6.398095 GGCATTCAAGCTTAAACCAAGTATT 58.602 36.000 0.00 0.00 36.55 1.89
2789 3705 8.647143 ACTCACATTTGGAAGTGTTTTATTTG 57.353 30.769 0.00 0.00 37.07 2.32
2809 3725 5.917541 TTGTCCTTTTAATCAGACGTCAC 57.082 39.130 19.50 2.77 31.75 3.67
2810 3726 4.951254 TGTCCTTTTAATCAGACGTCACA 58.049 39.130 19.50 5.59 31.75 3.58
2824 3740 1.397190 CGTCACATCAAGTTGTGCGTC 60.397 52.381 2.11 0.00 45.29 5.19
2859 3857 4.746535 TTCTCAGTAAGTTGTGTGTGGA 57.253 40.909 0.00 0.00 0.00 4.02
2933 3931 8.958119 TTCATGGTTCACATAAATACTACTCC 57.042 34.615 0.00 0.00 37.84 3.85
2934 3932 7.506114 TCATGGTTCACATAAATACTACTCCC 58.494 38.462 0.00 0.00 37.84 4.30
2935 3933 7.347222 TCATGGTTCACATAAATACTACTCCCT 59.653 37.037 0.00 0.00 37.84 4.20
2936 3934 7.120923 TGGTTCACATAAATACTACTCCCTC 57.879 40.000 0.00 0.00 0.00 4.30
2937 3935 6.099269 TGGTTCACATAAATACTACTCCCTCC 59.901 42.308 0.00 0.00 0.00 4.30
2938 3936 6.214399 GTTCACATAAATACTACTCCCTCCG 58.786 44.000 0.00 0.00 0.00 4.63
2939 3937 5.452255 TCACATAAATACTACTCCCTCCGT 58.548 41.667 0.00 0.00 0.00 4.69
2940 3938 5.895534 TCACATAAATACTACTCCCTCCGTT 59.104 40.000 0.00 0.00 0.00 4.44
2941 3939 6.381994 TCACATAAATACTACTCCCTCCGTTT 59.618 38.462 0.00 0.00 0.00 3.60
2942 3940 6.700520 CACATAAATACTACTCCCTCCGTTTC 59.299 42.308 0.00 0.00 0.00 2.78
2943 3941 6.381994 ACATAAATACTACTCCCTCCGTTTCA 59.618 38.462 0.00 0.00 0.00 2.69
2944 3942 5.750352 AAATACTACTCCCTCCGTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
2945 3943 5.750352 AATACTACTCCCTCCGTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
2946 3944 5.952347 ATACTACTCCCTCCGTTTCAAAT 57.048 39.130 0.00 0.00 0.00 2.32
2947 3945 4.635699 ACTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
2948 3946 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
2949 3947 6.309389 ACTACTCCCTCCGTTTCAAATTAT 57.691 37.500 0.00 0.00 0.00 1.28
2950 3948 6.718294 ACTACTCCCTCCGTTTCAAATTATT 58.282 36.000 0.00 0.00 0.00 1.40
2951 3949 6.822170 ACTACTCCCTCCGTTTCAAATTATTC 59.178 38.462 0.00 0.00 0.00 1.75
2952 3950 4.634443 ACTCCCTCCGTTTCAAATTATTCG 59.366 41.667 0.00 0.00 0.00 3.34
2953 3951 3.942748 TCCCTCCGTTTCAAATTATTCGG 59.057 43.478 0.00 0.00 39.40 4.30
2954 3952 3.488553 CCCTCCGTTTCAAATTATTCGGC 60.489 47.826 0.00 0.00 38.18 5.54
2955 3953 3.127895 CCTCCGTTTCAAATTATTCGGCA 59.872 43.478 0.00 0.00 38.18 5.69
2956 3954 4.086199 TCCGTTTCAAATTATTCGGCAC 57.914 40.909 0.00 0.00 38.18 5.01
2957 3955 3.754323 TCCGTTTCAAATTATTCGGCACT 59.246 39.130 0.00 0.00 38.18 4.40
2958 3956 3.851403 CCGTTTCAAATTATTCGGCACTG 59.149 43.478 0.00 0.00 0.00 3.66
2959 3957 4.378978 CCGTTTCAAATTATTCGGCACTGA 60.379 41.667 0.00 0.00 0.00 3.41
2960 3958 5.150683 CGTTTCAAATTATTCGGCACTGAA 58.849 37.500 0.00 0.00 0.00 3.02
2961 3959 5.627367 CGTTTCAAATTATTCGGCACTGAAA 59.373 36.000 0.00 0.00 0.00 2.69
2962 3960 6.307800 CGTTTCAAATTATTCGGCACTGAAAT 59.692 34.615 0.00 0.00 34.78 2.17
2963 3961 7.447430 GTTTCAAATTATTCGGCACTGAAATG 58.553 34.615 0.00 0.00 34.78 2.32
2964 3962 5.649557 TCAAATTATTCGGCACTGAAATGG 58.350 37.500 0.00 0.00 0.00 3.16
2965 3963 5.417266 TCAAATTATTCGGCACTGAAATGGA 59.583 36.000 0.00 0.00 0.00 3.41
2966 3964 6.096705 TCAAATTATTCGGCACTGAAATGGAT 59.903 34.615 0.00 0.00 0.00 3.41
2967 3965 4.898829 TTATTCGGCACTGAAATGGATG 57.101 40.909 0.00 0.00 0.00 3.51
2968 3966 2.198827 TTCGGCACTGAAATGGATGT 57.801 45.000 0.00 0.00 0.00 3.06
2969 3967 3.342377 TTCGGCACTGAAATGGATGTA 57.658 42.857 0.00 0.00 0.00 2.29
2970 3968 3.558931 TCGGCACTGAAATGGATGTAT 57.441 42.857 0.00 0.00 0.00 2.29
2971 3969 3.466836 TCGGCACTGAAATGGATGTATC 58.533 45.455 0.00 0.00 0.00 2.24
2972 3970 3.134623 TCGGCACTGAAATGGATGTATCT 59.865 43.478 0.00 0.00 0.00 1.98
2973 3971 4.343814 TCGGCACTGAAATGGATGTATCTA 59.656 41.667 0.00 0.00 0.00 1.98
2974 3972 4.687948 CGGCACTGAAATGGATGTATCTAG 59.312 45.833 0.00 0.00 0.00 2.43
2975 3973 5.509670 CGGCACTGAAATGGATGTATCTAGA 60.510 44.000 0.00 0.00 0.00 2.43
2976 3974 6.291377 GGCACTGAAATGGATGTATCTAGAA 58.709 40.000 0.00 0.00 0.00 2.10
2977 3975 6.203723 GGCACTGAAATGGATGTATCTAGAAC 59.796 42.308 0.00 0.00 0.00 3.01
2978 3976 6.989169 GCACTGAAATGGATGTATCTAGAACT 59.011 38.462 0.00 0.00 0.00 3.01
2979 3977 8.144478 GCACTGAAATGGATGTATCTAGAACTA 58.856 37.037 0.00 0.00 0.00 2.24
3010 4008 7.618502 ATCTAGATACATCCATACGTGAGAC 57.381 40.000 2.53 0.00 0.00 3.36
3011 4009 6.531021 TCTAGATACATCCATACGTGAGACA 58.469 40.000 0.00 0.00 0.00 3.41
3012 4010 6.996282 TCTAGATACATCCATACGTGAGACAA 59.004 38.462 0.00 0.00 0.00 3.18
3013 4011 6.078202 AGATACATCCATACGTGAGACAAG 57.922 41.667 0.00 0.00 0.00 3.16
3014 4012 5.594725 AGATACATCCATACGTGAGACAAGT 59.405 40.000 0.00 0.00 0.00 3.16
3015 4013 6.771267 AGATACATCCATACGTGAGACAAGTA 59.229 38.462 0.00 0.00 33.49 2.24
3016 4014 5.654603 ACATCCATACGTGAGACAAGTAA 57.345 39.130 0.00 0.00 32.82 2.24
3017 4015 6.222038 ACATCCATACGTGAGACAAGTAAT 57.778 37.500 0.00 0.00 32.82 1.89
3018 4016 6.640518 ACATCCATACGTGAGACAAGTAATT 58.359 36.000 0.00 0.00 32.82 1.40
3019 4017 6.757010 ACATCCATACGTGAGACAAGTAATTC 59.243 38.462 0.00 0.00 32.82 2.17
3020 4018 5.337554 TCCATACGTGAGACAAGTAATTCG 58.662 41.667 0.00 0.00 32.82 3.34
3021 4019 4.503007 CCATACGTGAGACAAGTAATTCGG 59.497 45.833 0.00 0.00 32.82 4.30
3022 4020 3.928727 ACGTGAGACAAGTAATTCGGA 57.071 42.857 0.00 0.00 0.00 4.55
3023 4021 4.247267 ACGTGAGACAAGTAATTCGGAA 57.753 40.909 0.00 0.00 0.00 4.30
3024 4022 3.985925 ACGTGAGACAAGTAATTCGGAAC 59.014 43.478 0.00 0.00 0.00 3.62
3025 4023 7.378882 ATACGTGAGACAAGTAATTCGGAACG 61.379 42.308 0.00 0.00 41.59 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.795329 CTCCTTGTAGTTGTTGGCCAT 58.205 47.619 6.09 0.00 0.00 4.40
25 26 2.163818 TCGGCTCCTTGTAGTTGTTG 57.836 50.000 0.00 0.00 0.00 3.33
47 48 1.386525 GGGCAACGATGATGGTGCAT 61.387 55.000 6.08 0.00 37.60 3.96
48 49 2.045708 GGGCAACGATGATGGTGCA 61.046 57.895 6.08 0.00 37.60 4.57
57 58 2.237143 TCAATGAGAGAAGGGCAACGAT 59.763 45.455 0.00 0.00 37.60 3.73
60 61 3.057245 GGTTTCAATGAGAGAAGGGCAAC 60.057 47.826 0.00 0.00 0.00 4.17
76 77 1.187087 ACAAAGTTTGCCCGGTTTCA 58.813 45.000 15.59 0.00 0.00 2.69
78 79 4.585581 ACTATAACAAAGTTTGCCCGGTTT 59.414 37.500 15.59 4.05 0.00 3.27
80 81 3.758425 ACTATAACAAAGTTTGCCCGGT 58.242 40.909 15.59 5.88 0.00 5.28
165 167 5.365025 TCTGATCTATGTTTCTCTTCCCTGG 59.635 44.000 0.00 0.00 0.00 4.45
167 169 6.099557 CCTTCTGATCTATGTTTCTCTTCCCT 59.900 42.308 0.00 0.00 0.00 4.20
169 171 7.118496 TCCTTCTGATCTATGTTTCTCTTCC 57.882 40.000 0.00 0.00 0.00 3.46
183 185 7.414540 GTGTTTACACATTGGATCCTTCTGATC 60.415 40.741 14.23 0.00 45.63 2.92
211 213 1.214325 CTGTGTCCATCCGCGTACA 59.786 57.895 4.92 0.00 0.00 2.90
221 223 1.728323 TTGGATCTGGTCTGTGTCCA 58.272 50.000 0.00 0.00 37.20 4.02
223 225 3.126001 TGTTTGGATCTGGTCTGTGTC 57.874 47.619 0.00 0.00 0.00 3.67
227 229 4.081406 TGGATTTGTTTGGATCTGGTCTG 58.919 43.478 0.00 0.00 0.00 3.51
234 236 6.690530 TGTCTTTGATGGATTTGTTTGGATC 58.309 36.000 0.00 0.00 0.00 3.36
247 249 3.505680 TGGTCGGAATTTGTCTTTGATGG 59.494 43.478 0.00 0.00 0.00 3.51
262 264 0.038067 TCTCGCGAAATTTGGTCGGA 60.038 50.000 11.33 0.00 38.93 4.55
264 266 2.694043 GAATCTCGCGAAATTTGGTCG 58.306 47.619 9.38 3.14 41.46 4.79
292 294 3.660111 GGGTGCGTGAAGGTGTGC 61.660 66.667 0.00 0.00 0.00 4.57
295 297 2.317609 CGAAGGGTGCGTGAAGGTG 61.318 63.158 0.00 0.00 0.00 4.00
302 304 1.815421 GCATCATCGAAGGGTGCGT 60.815 57.895 9.54 0.00 0.00 5.24
304 306 1.069204 TCTAGCATCATCGAAGGGTGC 59.931 52.381 15.60 15.60 36.11 5.01
307 309 2.344950 GCATCTAGCATCATCGAAGGG 58.655 52.381 0.00 0.00 44.79 3.95
383 385 1.021202 TTGTTGCGGAAGGTGAAGTG 58.979 50.000 0.00 0.00 0.00 3.16
384 386 1.757682 TTTGTTGCGGAAGGTGAAGT 58.242 45.000 0.00 0.00 0.00 3.01
389 391 1.534729 GAGGATTTGTTGCGGAAGGT 58.465 50.000 0.00 0.00 0.00 3.50
440 442 3.709141 AGTAAAGCCAAAACCAACCACAT 59.291 39.130 0.00 0.00 0.00 3.21
449 451 4.911514 TGGAGTGAAGTAAAGCCAAAAC 57.088 40.909 0.00 0.00 0.00 2.43
557 563 7.509546 GGAGGGAGTAAGATTTTGTCATATGA 58.490 38.462 0.00 0.00 0.00 2.15
695 702 6.604171 AGTTGAATCCTCATGTATTGCCATA 58.396 36.000 0.00 0.00 0.00 2.74
696 703 5.452255 AGTTGAATCCTCATGTATTGCCAT 58.548 37.500 0.00 0.00 0.00 4.40
703 710 8.812972 ACACTAAACTAGTTGAATCCTCATGTA 58.187 33.333 9.34 0.00 36.76 2.29
704 711 7.680730 ACACTAAACTAGTTGAATCCTCATGT 58.319 34.615 9.34 1.75 36.76 3.21
727 734 7.823799 TGACAATGTGAGATTTGCTCTTATACA 59.176 33.333 0.00 0.00 44.27 2.29
728 735 8.201554 TGACAATGTGAGATTTGCTCTTATAC 57.798 34.615 0.00 0.00 44.27 1.47
729 736 8.043113 ACTGACAATGTGAGATTTGCTCTTATA 58.957 33.333 6.89 0.00 44.27 0.98
736 743 4.614284 CGAAACTGACAATGTGAGATTTGC 59.386 41.667 6.89 0.00 0.00 3.68
748 755 4.948608 TGTTGCTTTACGAAACTGACAA 57.051 36.364 0.00 0.00 31.94 3.18
801 808 0.697010 CGTTTTGAATGTTCAGCGCG 59.303 50.000 0.00 0.00 38.61 6.86
855 1058 3.989056 ACCCAAAAGGGAAAGAAACTGA 58.011 40.909 7.71 0.00 41.63 3.41
868 1071 2.165030 CCAGCAGAGCAATACCCAAAAG 59.835 50.000 0.00 0.00 0.00 2.27
873 1076 1.077501 TGCCAGCAGAGCAATACCC 60.078 57.895 0.00 0.00 37.28 3.69
876 1079 0.677731 GTGGTGCCAGCAGAGCAATA 60.678 55.000 0.00 0.00 43.02 1.90
878 1081 2.595463 GTGGTGCCAGCAGAGCAA 60.595 61.111 0.00 0.00 43.02 3.91
891 1094 2.124736 CCATCGCCGGAATGTGGT 60.125 61.111 5.05 0.00 0.00 4.16
904 1107 0.251787 AGGAAAACTGGGTGGCCATC 60.252 55.000 9.72 8.70 0.00 3.51
905 1108 0.251787 GAGGAAAACTGGGTGGCCAT 60.252 55.000 9.72 0.00 0.00 4.40
906 1109 1.152830 GAGGAAAACTGGGTGGCCA 59.847 57.895 0.00 0.00 0.00 5.36
907 1110 0.178961 AAGAGGAAAACTGGGTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
1114 1333 2.892425 GGATTCTGCCGCCACGAG 60.892 66.667 0.00 0.00 0.00 4.18
1116 1335 2.514592 ATGGATTCTGCCGCCACG 60.515 61.111 0.00 0.00 33.93 4.94
1167 1386 4.994471 TGGCAGTGGAGCAGCGTG 62.994 66.667 0.00 0.00 35.83 5.34
1224 1443 2.038659 GTGAGGGGGAGAGAAGAGATG 58.961 57.143 0.00 0.00 0.00 2.90
1228 1447 1.392534 GGGTGAGGGGGAGAGAAGA 59.607 63.158 0.00 0.00 0.00 2.87
1269 1513 3.038280 AGGGTTTTTGGGTTCTTTCCAG 58.962 45.455 0.00 0.00 35.48 3.86
1270 1514 3.035363 GAGGGTTTTTGGGTTCTTTCCA 58.965 45.455 0.00 0.00 0.00 3.53
1271 1515 3.305720 AGAGGGTTTTTGGGTTCTTTCC 58.694 45.455 0.00 0.00 0.00 3.13
1292 1555 5.511202 GGCAAATCAAAAAGTGAGATGGGAA 60.511 40.000 0.00 0.00 40.43 3.97
1318 1656 1.153107 CATCAGCTTCCATGGCCGA 60.153 57.895 6.96 0.00 0.00 5.54
1322 1660 2.364324 CCCAAATCATCAGCTTCCATGG 59.636 50.000 4.97 4.97 0.00 3.66
1382 1827 2.019951 GTGGTAGCACACGACGTGG 61.020 63.158 29.86 19.72 46.45 4.94
1493 1938 1.078426 GCAGCCGAACACCCTGTAT 60.078 57.895 0.00 0.00 0.00 2.29
1869 2320 1.141053 GACCAGTCTGTCCCTGTTGTT 59.859 52.381 0.00 0.00 0.00 2.83
2072 2545 0.904865 TTCACTGCATCCTCCTCGGT 60.905 55.000 0.00 0.00 0.00 4.69
2093 2566 1.871676 CAGAAGATCATGGACCGCATG 59.128 52.381 0.00 0.00 0.00 4.06
2141 2766 3.634448 ACTGCTACCTACACAGCTCATAG 59.366 47.826 0.00 0.00 38.63 2.23
2146 2771 3.769844 ACATTACTGCTACCTACACAGCT 59.230 43.478 0.00 0.00 38.63 4.24
2147 2772 4.124851 ACATTACTGCTACCTACACAGC 57.875 45.455 0.00 0.00 38.31 4.40
2148 2773 5.067936 AGCTACATTACTGCTACCTACACAG 59.932 44.000 0.00 0.00 35.05 3.66
2149 2774 4.954202 AGCTACATTACTGCTACCTACACA 59.046 41.667 0.00 0.00 35.05 3.72
2150 2775 5.517322 AGCTACATTACTGCTACCTACAC 57.483 43.478 0.00 0.00 35.05 2.90
2160 2939 7.321153 AGTACAAACCAGTAGCTACATTACTG 58.679 38.462 25.28 15.70 44.79 2.74
2168 2990 5.185249 CAGAGGAAGTACAAACCAGTAGCTA 59.815 44.000 0.00 0.00 0.00 3.32
2187 3009 5.682049 CGTCTTACGTTATGAAACAGAGG 57.318 43.478 0.00 0.00 36.74 3.69
2202 3024 9.690434 CAATATTAGCTTGAGAAAACGTCTTAC 57.310 33.333 0.00 0.00 36.41 2.34
2203 3025 8.388103 GCAATATTAGCTTGAGAAAACGTCTTA 58.612 33.333 0.00 0.00 36.41 2.10
2204 3026 7.119846 AGCAATATTAGCTTGAGAAAACGTCTT 59.880 33.333 0.00 0.00 39.87 3.01
2205 3027 6.595716 AGCAATATTAGCTTGAGAAAACGTCT 59.404 34.615 0.00 0.00 39.87 4.18
2206 3028 6.776094 AGCAATATTAGCTTGAGAAAACGTC 58.224 36.000 0.00 0.00 39.87 4.34
2207 3029 6.743575 AGCAATATTAGCTTGAGAAAACGT 57.256 33.333 0.00 0.00 39.87 3.99
2218 3040 7.325694 AGATGTTTTTGCAAGCAATATTAGCT 58.674 30.769 8.46 6.58 45.97 3.32
2219 3041 7.529880 AGATGTTTTTGCAAGCAATATTAGC 57.470 32.000 8.46 0.00 35.70 3.09
2221 3043 9.920133 TGTTAGATGTTTTTGCAAGCAATATTA 57.080 25.926 8.46 0.00 35.70 0.98
2222 3044 8.830201 TGTTAGATGTTTTTGCAAGCAATATT 57.170 26.923 8.46 0.00 35.70 1.28
2223 3045 9.439500 AATGTTAGATGTTTTTGCAAGCAATAT 57.561 25.926 8.46 0.85 35.70 1.28
2224 3046 8.710551 CAATGTTAGATGTTTTTGCAAGCAATA 58.289 29.630 8.46 0.77 35.70 1.90
2225 3047 7.227116 ACAATGTTAGATGTTTTTGCAAGCAAT 59.773 29.630 8.46 0.00 35.70 3.56
2226 3048 6.538021 ACAATGTTAGATGTTTTTGCAAGCAA 59.462 30.769 2.89 2.89 0.00 3.91
2227 3049 6.047870 ACAATGTTAGATGTTTTTGCAAGCA 58.952 32.000 0.00 0.90 0.00 3.91
2228 3050 6.529463 ACAATGTTAGATGTTTTTGCAAGC 57.471 33.333 0.00 0.00 0.00 4.01
2229 3051 8.081633 TCCTACAATGTTAGATGTTTTTGCAAG 58.918 33.333 0.00 0.00 0.00 4.01
2230 3052 7.946207 TCCTACAATGTTAGATGTTTTTGCAA 58.054 30.769 0.00 0.00 0.00 4.08
2231 3053 7.309133 CCTCCTACAATGTTAGATGTTTTTGCA 60.309 37.037 0.00 0.00 0.00 4.08
2232 3054 7.029563 CCTCCTACAATGTTAGATGTTTTTGC 58.970 38.462 0.00 0.00 0.00 3.68
2233 3055 7.393234 TCCCTCCTACAATGTTAGATGTTTTTG 59.607 37.037 0.00 0.00 0.00 2.44
2234 3056 7.466804 TCCCTCCTACAATGTTAGATGTTTTT 58.533 34.615 0.00 0.00 0.00 1.94
2235 3057 7.027874 TCCCTCCTACAATGTTAGATGTTTT 57.972 36.000 0.00 0.00 0.00 2.43
2236 3058 6.353082 CCTCCCTCCTACAATGTTAGATGTTT 60.353 42.308 0.00 0.00 0.00 2.83
2237 3059 5.131142 CCTCCCTCCTACAATGTTAGATGTT 59.869 44.000 0.00 0.00 0.00 2.71
2238 3060 4.656112 CCTCCCTCCTACAATGTTAGATGT 59.344 45.833 0.00 0.00 0.00 3.06
2239 3061 4.040952 CCCTCCCTCCTACAATGTTAGATG 59.959 50.000 0.00 0.00 0.00 2.90
2240 3062 4.077982 TCCCTCCCTCCTACAATGTTAGAT 60.078 45.833 0.00 0.00 0.00 1.98
2241 3063 3.273886 TCCCTCCCTCCTACAATGTTAGA 59.726 47.826 0.00 0.00 0.00 2.10
2242 3064 3.643792 CTCCCTCCCTCCTACAATGTTAG 59.356 52.174 0.00 0.00 0.00 2.34
2243 3065 3.013648 ACTCCCTCCCTCCTACAATGTTA 59.986 47.826 0.00 0.00 0.00 2.41
2244 3066 2.225908 ACTCCCTCCCTCCTACAATGTT 60.226 50.000 0.00 0.00 0.00 2.71
2245 3067 1.366435 ACTCCCTCCCTCCTACAATGT 59.634 52.381 0.00 0.00 0.00 2.71
2246 3068 2.182516 ACTCCCTCCCTCCTACAATG 57.817 55.000 0.00 0.00 0.00 2.82
2247 3069 2.866454 AGTACTCCCTCCCTCCTACAAT 59.134 50.000 0.00 0.00 0.00 2.71
2248 3070 2.295143 AGTACTCCCTCCCTCCTACAA 58.705 52.381 0.00 0.00 0.00 2.41
2249 3071 1.997340 AGTACTCCCTCCCTCCTACA 58.003 55.000 0.00 0.00 0.00 2.74
2250 3072 4.745484 ATAAGTACTCCCTCCCTCCTAC 57.255 50.000 0.00 0.00 0.00 3.18
2251 3073 5.197189 TCAAATAAGTACTCCCTCCCTCCTA 59.803 44.000 0.00 0.00 0.00 2.94
2252 3074 4.015541 TCAAATAAGTACTCCCTCCCTCCT 60.016 45.833 0.00 0.00 0.00 3.69
2253 3075 4.296056 TCAAATAAGTACTCCCTCCCTCC 58.704 47.826 0.00 0.00 0.00 4.30
2254 3076 6.099845 TCAATCAAATAAGTACTCCCTCCCTC 59.900 42.308 0.00 0.00 0.00 4.30
2255 3077 5.970640 TCAATCAAATAAGTACTCCCTCCCT 59.029 40.000 0.00 0.00 0.00 4.20
2256 3078 6.126739 ACTCAATCAAATAAGTACTCCCTCCC 60.127 42.308 0.00 0.00 0.00 4.30
2257 3079 6.763610 CACTCAATCAAATAAGTACTCCCTCC 59.236 42.308 0.00 0.00 0.00 4.30
2258 3080 7.556844 TCACTCAATCAAATAAGTACTCCCTC 58.443 38.462 0.00 0.00 0.00 4.30
2259 3081 7.181125 ACTCACTCAATCAAATAAGTACTCCCT 59.819 37.037 0.00 0.00 0.00 4.20
2260 3082 7.278868 CACTCACTCAATCAAATAAGTACTCCC 59.721 40.741 0.00 0.00 0.00 4.30
2261 3083 7.201565 GCACTCACTCAATCAAATAAGTACTCC 60.202 40.741 0.00 0.00 0.00 3.85
2262 3084 7.331934 TGCACTCACTCAATCAAATAAGTACTC 59.668 37.037 0.00 0.00 0.00 2.59
2297 3132 6.180472 TGGTTCAGGATCTCCAAATTAACTC 58.820 40.000 0.00 0.00 38.89 3.01
2326 3161 6.966021 TGCAGGTTATAAAAGAACAGAACAC 58.034 36.000 0.00 0.00 0.00 3.32
2382 3217 4.773323 AAGCAGCTAGAACAAAATGGTC 57.227 40.909 0.00 0.00 33.32 4.02
2408 3251 5.168569 ACATGAACAACCTGATACAGTACG 58.831 41.667 0.00 0.00 0.00 3.67
2440 3294 4.849383 AGTTCGTTTCTTGTGAACAAAACG 59.151 37.500 19.63 19.63 44.67 3.60
2533 3414 2.832733 AGCTACTGGTTTGTACTCCCTC 59.167 50.000 0.00 0.00 0.00 4.30
2534 3415 2.903926 AGCTACTGGTTTGTACTCCCT 58.096 47.619 0.00 0.00 0.00 4.20
2535 3416 3.512724 TGTAGCTACTGGTTTGTACTCCC 59.487 47.826 23.84 0.00 0.00 4.30
2536 3417 4.796038 TGTAGCTACTGGTTTGTACTCC 57.204 45.455 23.84 0.00 0.00 3.85
2537 3418 8.943909 ATAAATGTAGCTACTGGTTTGTACTC 57.056 34.615 23.84 0.00 0.00 2.59
2538 3419 8.759782 AGATAAATGTAGCTACTGGTTTGTACT 58.240 33.333 23.84 16.54 0.00 2.73
2539 3420 8.818057 CAGATAAATGTAGCTACTGGTTTGTAC 58.182 37.037 23.84 15.15 0.00 2.90
2540 3421 8.755028 TCAGATAAATGTAGCTACTGGTTTGTA 58.245 33.333 23.84 9.30 0.00 2.41
2541 3422 7.620880 TCAGATAAATGTAGCTACTGGTTTGT 58.379 34.615 23.84 18.07 0.00 2.83
2542 3423 7.981789 TCTCAGATAAATGTAGCTACTGGTTTG 59.018 37.037 23.84 13.22 0.00 2.93
2543 3424 8.079211 TCTCAGATAAATGTAGCTACTGGTTT 57.921 34.615 23.84 20.96 0.00 3.27
2544 3425 7.661536 TCTCAGATAAATGTAGCTACTGGTT 57.338 36.000 23.84 16.30 0.00 3.67
2545 3426 7.343316 AGTTCTCAGATAAATGTAGCTACTGGT 59.657 37.037 23.84 11.37 0.00 4.00
2546 3427 7.721402 AGTTCTCAGATAAATGTAGCTACTGG 58.279 38.462 23.84 7.15 0.00 4.00
2551 3432 8.972127 TCTGTTAGTTCTCAGATAAATGTAGCT 58.028 33.333 0.00 0.00 36.04 3.32
2552 3433 9.243637 CTCTGTTAGTTCTCAGATAAATGTAGC 57.756 37.037 0.00 0.00 39.48 3.58
2553 3434 9.743057 CCTCTGTTAGTTCTCAGATAAATGTAG 57.257 37.037 0.00 0.00 39.48 2.74
2554 3435 8.696374 CCCTCTGTTAGTTCTCAGATAAATGTA 58.304 37.037 0.00 0.00 39.48 2.29
2555 3436 7.400339 TCCCTCTGTTAGTTCTCAGATAAATGT 59.600 37.037 0.00 0.00 39.48 2.71
2556 3437 7.786030 TCCCTCTGTTAGTTCTCAGATAAATG 58.214 38.462 0.00 0.00 39.48 2.32
2557 3438 7.621683 ACTCCCTCTGTTAGTTCTCAGATAAAT 59.378 37.037 0.00 0.00 39.48 1.40
2558 3439 6.954684 ACTCCCTCTGTTAGTTCTCAGATAAA 59.045 38.462 0.00 0.00 39.48 1.40
2559 3440 6.494952 ACTCCCTCTGTTAGTTCTCAGATAA 58.505 40.000 0.00 0.00 39.48 1.75
2560 3441 6.080969 ACTCCCTCTGTTAGTTCTCAGATA 57.919 41.667 0.00 0.00 39.48 1.98
2561 3442 4.941713 ACTCCCTCTGTTAGTTCTCAGAT 58.058 43.478 0.00 0.00 39.48 2.90
2562 3443 4.390129 ACTCCCTCTGTTAGTTCTCAGA 57.610 45.455 0.00 0.00 38.20 3.27
2563 3444 5.010933 TGTACTCCCTCTGTTAGTTCTCAG 58.989 45.833 0.00 0.00 0.00 3.35
2564 3445 4.994282 TGTACTCCCTCTGTTAGTTCTCA 58.006 43.478 0.00 0.00 0.00 3.27
2565 3446 5.979288 TTGTACTCCCTCTGTTAGTTCTC 57.021 43.478 0.00 0.00 0.00 2.87
2566 3447 5.011840 GGTTTGTACTCCCTCTGTTAGTTCT 59.988 44.000 0.00 0.00 0.00 3.01
2567 3448 5.221581 TGGTTTGTACTCCCTCTGTTAGTTC 60.222 44.000 0.00 0.00 0.00 3.01
2568 3449 4.657039 TGGTTTGTACTCCCTCTGTTAGTT 59.343 41.667 0.00 0.00 0.00 2.24
2569 3450 4.228824 TGGTTTGTACTCCCTCTGTTAGT 58.771 43.478 0.00 0.00 0.00 2.24
2570 3451 4.283722 ACTGGTTTGTACTCCCTCTGTTAG 59.716 45.833 0.00 0.00 0.00 2.34
2571 3452 4.228824 ACTGGTTTGTACTCCCTCTGTTA 58.771 43.478 0.00 0.00 0.00 2.41
2572 3453 3.046374 ACTGGTTTGTACTCCCTCTGTT 58.954 45.455 0.00 0.00 0.00 3.16
2573 3454 2.690840 ACTGGTTTGTACTCCCTCTGT 58.309 47.619 0.00 0.00 0.00 3.41
2574 3455 3.368531 GCTACTGGTTTGTACTCCCTCTG 60.369 52.174 0.00 0.00 0.00 3.35
2575 3456 2.832733 GCTACTGGTTTGTACTCCCTCT 59.167 50.000 0.00 0.00 0.00 3.69
2576 3457 2.832733 AGCTACTGGTTTGTACTCCCTC 59.167 50.000 0.00 0.00 0.00 4.30
2577 3458 2.903926 AGCTACTGGTTTGTACTCCCT 58.096 47.619 0.00 0.00 0.00 4.20
2578 3459 3.768215 AGTAGCTACTGGTTTGTACTCCC 59.232 47.826 25.52 0.00 34.72 4.30
2579 3460 6.071728 TGTTAGTAGCTACTGGTTTGTACTCC 60.072 42.308 32.21 9.32 37.10 3.85
2580 3461 6.917533 TGTTAGTAGCTACTGGTTTGTACTC 58.082 40.000 32.21 9.84 37.10 2.59
2581 3462 6.071503 CCTGTTAGTAGCTACTGGTTTGTACT 60.072 42.308 32.21 9.94 37.10 2.73
2582 3463 6.098017 CCTGTTAGTAGCTACTGGTTTGTAC 58.902 44.000 32.21 18.38 37.10 2.90
2583 3464 5.186409 CCCTGTTAGTAGCTACTGGTTTGTA 59.814 44.000 32.21 11.10 37.10 2.41
2584 3465 4.020485 CCCTGTTAGTAGCTACTGGTTTGT 60.020 45.833 32.21 10.37 37.10 2.83
2585 3466 4.504858 CCCTGTTAGTAGCTACTGGTTTG 58.495 47.826 32.21 18.49 37.10 2.93
2586 3467 3.518303 CCCCTGTTAGTAGCTACTGGTTT 59.482 47.826 32.21 11.79 37.10 3.27
2587 3468 3.105283 CCCCTGTTAGTAGCTACTGGTT 58.895 50.000 32.21 12.16 37.10 3.67
2588 3469 2.626149 CCCCCTGTTAGTAGCTACTGGT 60.626 54.545 32.21 12.52 37.10 4.00
2589 3470 2.040178 CCCCCTGTTAGTAGCTACTGG 58.960 57.143 32.21 24.23 37.10 4.00
2590 3471 2.959707 CTCCCCCTGTTAGTAGCTACTG 59.040 54.545 32.21 17.43 37.10 2.74
2591 3472 2.586368 ACTCCCCCTGTTAGTAGCTACT 59.414 50.000 28.50 28.50 40.24 2.57
2592 3473 3.029483 ACTCCCCCTGTTAGTAGCTAC 57.971 52.381 16.43 16.43 0.00 3.58
2593 3474 3.528905 TGTACTCCCCCTGTTAGTAGCTA 59.471 47.826 0.00 0.00 0.00 3.32
2594 3475 2.313945 TGTACTCCCCCTGTTAGTAGCT 59.686 50.000 0.00 0.00 0.00 3.32
2595 3476 2.743553 TGTACTCCCCCTGTTAGTAGC 58.256 52.381 0.00 0.00 0.00 3.58
2596 3477 4.081254 GGTTTGTACTCCCCCTGTTAGTAG 60.081 50.000 0.00 0.00 0.00 2.57
2597 3478 3.840078 GGTTTGTACTCCCCCTGTTAGTA 59.160 47.826 0.00 0.00 0.00 1.82
2598 3479 2.641321 GGTTTGTACTCCCCCTGTTAGT 59.359 50.000 0.00 0.00 0.00 2.24
2599 3480 2.640826 TGGTTTGTACTCCCCCTGTTAG 59.359 50.000 0.00 0.00 0.00 2.34
2600 3481 2.703947 TGGTTTGTACTCCCCCTGTTA 58.296 47.619 0.00 0.00 0.00 2.41
2601 3482 1.525175 TGGTTTGTACTCCCCCTGTT 58.475 50.000 0.00 0.00 0.00 3.16
2602 3483 1.755200 ATGGTTTGTACTCCCCCTGT 58.245 50.000 0.00 0.00 0.00 4.00
2603 3484 3.112263 TCTATGGTTTGTACTCCCCCTG 58.888 50.000 0.00 0.00 0.00 4.45
2604 3485 3.502051 TCTATGGTTTGTACTCCCCCT 57.498 47.619 0.00 0.00 0.00 4.79
2605 3486 3.747708 GCATCTATGGTTTGTACTCCCCC 60.748 52.174 0.00 0.00 0.00 5.40
2606 3487 3.118038 TGCATCTATGGTTTGTACTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
2607 3488 4.150897 TGCATCTATGGTTTGTACTCCC 57.849 45.455 0.00 0.00 0.00 4.30
2608 3489 5.615289 AGATGCATCTATGGTTTGTACTCC 58.385 41.667 27.73 0.00 34.85 3.85
2609 3490 8.662781 TTTAGATGCATCTATGGTTTGTACTC 57.337 34.615 31.73 0.98 39.02 2.59
2610 3491 9.060347 CATTTAGATGCATCTATGGTTTGTACT 57.940 33.333 31.73 10.24 39.02 2.73
2611 3492 8.840321 ACATTTAGATGCATCTATGGTTTGTAC 58.160 33.333 31.73 1.26 39.02 2.90
2612 3493 8.978874 ACATTTAGATGCATCTATGGTTTGTA 57.021 30.769 31.73 15.19 39.02 2.41
2613 3494 7.886629 ACATTTAGATGCATCTATGGTTTGT 57.113 32.000 31.73 24.92 39.02 2.83
2615 3496 9.797642 TGATACATTTAGATGCATCTATGGTTT 57.202 29.630 31.73 23.36 39.02 3.27
2616 3497 9.970553 ATGATACATTTAGATGCATCTATGGTT 57.029 29.630 31.73 20.89 39.02 3.67
2617 3498 9.970553 AATGATACATTTAGATGCATCTATGGT 57.029 29.630 31.73 28.11 39.02 3.55
2622 3503 9.346005 TGTGAAATGATACATTTAGATGCATCT 57.654 29.630 30.85 30.85 37.09 2.90
2623 3504 9.955208 TTGTGAAATGATACATTTAGATGCATC 57.045 29.630 19.37 19.37 36.82 3.91
2624 3505 9.961265 CTTGTGAAATGATACATTTAGATGCAT 57.039 29.630 0.00 0.00 36.72 3.96
2625 3506 9.176460 TCTTGTGAAATGATACATTTAGATGCA 57.824 29.630 9.24 0.00 36.72 3.96
2644 3525 9.597170 TGAAAAATTGATGTTCATTTCTTGTGA 57.403 25.926 0.00 0.00 29.19 3.58
2727 3643 6.183360 GCAATACTTGGTTTAAGCTTGAATGC 60.183 38.462 9.86 7.63 40.16 3.56
2750 3666 1.140652 TGTGAGTCTGTCCACATTGCA 59.859 47.619 0.00 0.00 38.26 4.08
2789 3705 5.637810 TGATGTGACGTCTGATTAAAAGGAC 59.362 40.000 17.92 2.19 0.00 3.85
2809 3725 2.563976 CTTTCGACGCACAACTTGATG 58.436 47.619 0.00 0.00 0.00 3.07
2810 3726 1.069906 GCTTTCGACGCACAACTTGAT 60.070 47.619 0.00 0.00 0.00 2.57
2824 3740 1.127582 CTGAGAAAGGCTTCGCTTTCG 59.872 52.381 0.00 0.00 42.48 3.46
2840 3838 4.212004 CACATCCACACACAACTTACTGAG 59.788 45.833 0.00 0.00 0.00 3.35
2843 3841 4.150897 ACACATCCACACACAACTTACT 57.849 40.909 0.00 0.00 0.00 2.24
2859 3857 1.777878 TGTCCCCTGTTTGGTACACAT 59.222 47.619 0.00 0.00 39.29 3.21
2930 3928 4.035208 CCGAATAATTTGAAACGGAGGGAG 59.965 45.833 0.00 0.00 42.40 4.30
2931 3929 3.942748 CCGAATAATTTGAAACGGAGGGA 59.057 43.478 0.00 0.00 42.40 4.20
2932 3930 3.488553 GCCGAATAATTTGAAACGGAGGG 60.489 47.826 7.92 0.00 42.40 4.30
2933 3931 3.127895 TGCCGAATAATTTGAAACGGAGG 59.872 43.478 7.92 0.00 42.40 4.30
2934 3932 4.095610 GTGCCGAATAATTTGAAACGGAG 58.904 43.478 7.92 0.00 42.40 4.63
2935 3933 3.754323 AGTGCCGAATAATTTGAAACGGA 59.246 39.130 7.92 0.00 42.40 4.69
2936 3934 3.851403 CAGTGCCGAATAATTTGAAACGG 59.149 43.478 0.00 0.00 42.63 4.44
2937 3935 4.717991 TCAGTGCCGAATAATTTGAAACG 58.282 39.130 0.00 0.00 0.00 3.60
2938 3936 7.411804 CCATTTCAGTGCCGAATAATTTGAAAC 60.412 37.037 0.00 0.00 36.33 2.78
2939 3937 6.589523 CCATTTCAGTGCCGAATAATTTGAAA 59.410 34.615 0.00 0.00 37.44 2.69
2940 3938 6.071672 TCCATTTCAGTGCCGAATAATTTGAA 60.072 34.615 0.00 0.00 0.00 2.69
2941 3939 5.417266 TCCATTTCAGTGCCGAATAATTTGA 59.583 36.000 0.00 0.00 0.00 2.69
2942 3940 5.649557 TCCATTTCAGTGCCGAATAATTTG 58.350 37.500 0.00 0.00 0.00 2.32
2943 3941 5.913137 TCCATTTCAGTGCCGAATAATTT 57.087 34.783 0.00 0.00 0.00 1.82
2944 3942 5.360714 ACATCCATTTCAGTGCCGAATAATT 59.639 36.000 0.00 0.00 0.00 1.40
2945 3943 4.889409 ACATCCATTTCAGTGCCGAATAAT 59.111 37.500 0.00 0.00 0.00 1.28
2946 3944 4.269183 ACATCCATTTCAGTGCCGAATAA 58.731 39.130 0.00 0.00 0.00 1.40
2947 3945 3.884895 ACATCCATTTCAGTGCCGAATA 58.115 40.909 0.00 0.00 0.00 1.75
2948 3946 2.726821 ACATCCATTTCAGTGCCGAAT 58.273 42.857 0.00 0.00 0.00 3.34
2949 3947 2.198827 ACATCCATTTCAGTGCCGAA 57.801 45.000 0.00 0.00 0.00 4.30
2950 3948 3.134623 AGATACATCCATTTCAGTGCCGA 59.865 43.478 0.00 0.00 0.00 5.54
2951 3949 3.470709 AGATACATCCATTTCAGTGCCG 58.529 45.455 0.00 0.00 0.00 5.69
2952 3950 5.858381 TCTAGATACATCCATTTCAGTGCC 58.142 41.667 0.00 0.00 0.00 5.01
2953 3951 6.989169 AGTTCTAGATACATCCATTTCAGTGC 59.011 38.462 0.00 0.00 0.00 4.40
2984 3982 9.332502 GTCTCACGTATGGATGTATCTAGATAT 57.667 37.037 15.43 1.62 0.00 1.63
2985 3983 8.319146 TGTCTCACGTATGGATGTATCTAGATA 58.681 37.037 8.44 8.44 0.00 1.98
2986 3984 7.168905 TGTCTCACGTATGGATGTATCTAGAT 58.831 38.462 10.73 10.73 0.00 1.98
2987 3985 6.531021 TGTCTCACGTATGGATGTATCTAGA 58.469 40.000 0.00 0.00 0.00 2.43
2988 3986 6.803154 TGTCTCACGTATGGATGTATCTAG 57.197 41.667 0.00 0.00 0.00 2.43
2989 3987 6.771267 ACTTGTCTCACGTATGGATGTATCTA 59.229 38.462 0.00 0.00 0.00 1.98
2990 3988 5.594725 ACTTGTCTCACGTATGGATGTATCT 59.405 40.000 0.00 0.00 0.00 1.98
2991 3989 5.833082 ACTTGTCTCACGTATGGATGTATC 58.167 41.667 0.00 0.00 0.00 2.24
2992 3990 5.854010 ACTTGTCTCACGTATGGATGTAT 57.146 39.130 0.00 0.00 0.00 2.29
2993 3991 6.762702 TTACTTGTCTCACGTATGGATGTA 57.237 37.500 0.00 0.00 0.00 2.29
2994 3992 5.654603 TTACTTGTCTCACGTATGGATGT 57.345 39.130 0.00 0.00 0.00 3.06
2995 3993 6.074835 CGAATTACTTGTCTCACGTATGGATG 60.075 42.308 0.00 0.00 0.00 3.51
2996 3994 5.977725 CGAATTACTTGTCTCACGTATGGAT 59.022 40.000 0.00 0.00 0.00 3.41
2997 3995 5.337554 CGAATTACTTGTCTCACGTATGGA 58.662 41.667 0.00 0.00 0.00 3.41
2998 3996 4.503007 CCGAATTACTTGTCTCACGTATGG 59.497 45.833 0.00 0.00 0.00 2.74
2999 3997 5.337554 TCCGAATTACTTGTCTCACGTATG 58.662 41.667 0.00 0.00 0.00 2.39
3000 3998 5.571784 TCCGAATTACTTGTCTCACGTAT 57.428 39.130 0.00 0.00 0.00 3.06
3001 3999 5.156355 GTTCCGAATTACTTGTCTCACGTA 58.844 41.667 0.00 0.00 0.00 3.57
3002 4000 3.928727 TCCGAATTACTTGTCTCACGT 57.071 42.857 0.00 0.00 0.00 4.49
3003 4001 3.059044 CGTTCCGAATTACTTGTCTCACG 59.941 47.826 0.00 0.00 0.00 4.35
3004 4002 3.367025 CCGTTCCGAATTACTTGTCTCAC 59.633 47.826 0.00 0.00 0.00 3.51
3005 4003 3.256383 TCCGTTCCGAATTACTTGTCTCA 59.744 43.478 0.00 0.00 0.00 3.27
3006 4004 3.841643 TCCGTTCCGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
3007 4005 3.947910 TCCGTTCCGAATTACTTGTCT 57.052 42.857 0.00 0.00 0.00 3.41
3008 4006 3.370061 CCTTCCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3009 4007 3.007182 TCCTTCCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3010 4008 3.592059 TCCTTCCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3011 4009 3.260128 ACTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3012 4010 2.830321 ACTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3013 4011 3.242549 ACTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3014 4012 4.019174 AGTACTCCTTCCGTTCCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
3015 4013 2.830321 AGTACTCCTTCCGTTCCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
3016 4014 2.426381 GAGTACTCCTTCCGTTCCGAAT 59.574 50.000 12.13 0.00 0.00 3.34
3017 4015 1.815003 GAGTACTCCTTCCGTTCCGAA 59.185 52.381 12.13 0.00 0.00 4.30
3018 4016 1.457346 GAGTACTCCTTCCGTTCCGA 58.543 55.000 12.13 0.00 0.00 4.55
3019 4017 0.098376 CGAGTACTCCTTCCGTTCCG 59.902 60.000 17.23 0.00 0.00 4.30
3020 4018 1.135460 CACGAGTACTCCTTCCGTTCC 60.135 57.143 17.23 0.00 0.00 3.62
3021 4019 1.538950 ACACGAGTACTCCTTCCGTTC 59.461 52.381 17.23 0.00 0.00 3.95
3022 4020 1.268899 CACACGAGTACTCCTTCCGTT 59.731 52.381 17.23 1.12 0.00 4.44
3023 4021 0.879765 CACACGAGTACTCCTTCCGT 59.120 55.000 17.23 8.94 0.00 4.69
3024 4022 0.879765 ACACACGAGTACTCCTTCCG 59.120 55.000 17.23 8.27 0.00 4.30
3025 4023 3.366781 GGTAACACACGAGTACTCCTTCC 60.367 52.174 17.23 5.30 0.00 3.46
3026 4024 3.254166 TGGTAACACACGAGTACTCCTTC 59.746 47.826 17.23 0.00 46.17 3.46
3027 4025 3.225104 TGGTAACACACGAGTACTCCTT 58.775 45.455 17.23 1.44 46.17 3.36
3028 4026 2.867624 TGGTAACACACGAGTACTCCT 58.132 47.619 17.23 2.73 46.17 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.