Multiple sequence alignment - TraesCS7B01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G350900 chr7B 100.000 2408 0 0 1 2408 608190410 608192817 0.000000e+00 4447
1 TraesCS7B01G350900 chr3A 98.960 1443 12 1 1 1440 474675347 474676789 0.000000e+00 2579
2 TraesCS7B01G350900 chr3A 98.544 1442 18 1 1 1439 8667717 8669158 0.000000e+00 2543
3 TraesCS7B01G350900 chr3A 79.423 520 80 18 1866 2378 18663604 18663105 2.290000e-90 342
4 TraesCS7B01G350900 chr3A 72.761 547 122 22 914 1438 384197659 384197118 2.480000e-35 159
5 TraesCS7B01G350900 chr2A 98.405 1442 20 1 1 1439 96144888 96143447 0.000000e+00 2532
6 TraesCS7B01G350900 chr6B 96.886 1445 34 5 1 1442 694415414 694413978 0.000000e+00 2409
7 TraesCS7B01G350900 chr7D 93.218 1445 85 9 1 1440 119650183 119648747 0.000000e+00 2113
8 TraesCS7B01G350900 chr7D 86.041 917 73 25 1484 2371 560248099 560248989 0.000000e+00 933
9 TraesCS7B01G350900 chr1A 86.428 1061 120 9 138 1198 346751926 346750890 0.000000e+00 1140
10 TraesCS7B01G350900 chr1A 79.423 520 80 16 1866 2378 585606924 585606425 2.290000e-90 342
11 TraesCS7B01G350900 chr7A 82.839 944 101 40 1483 2408 644460911 644461811 0.000000e+00 789
12 TraesCS7B01G350900 chr7A 79.423 520 80 16 1866 2378 107343921 107343422 2.290000e-90 342
13 TraesCS7B01G350900 chr5D 82.083 720 96 18 1666 2378 289584812 289584119 3.450000e-163 584
14 TraesCS7B01G350900 chr3D 80.860 721 104 20 1664 2378 34544695 34545387 9.800000e-149 536
15 TraesCS7B01G350900 chr4A 84.127 378 53 3 1745 2116 619954893 619954517 2.280000e-95 359
16 TraesCS7B01G350900 chr5B 79.423 520 70 18 1866 2378 459644422 459643933 1.380000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G350900 chr7B 608190410 608192817 2407 False 4447 4447 100.000 1 2408 1 chr7B.!!$F1 2407
1 TraesCS7B01G350900 chr3A 474675347 474676789 1442 False 2579 2579 98.960 1 1440 1 chr3A.!!$F2 1439
2 TraesCS7B01G350900 chr3A 8667717 8669158 1441 False 2543 2543 98.544 1 1439 1 chr3A.!!$F1 1438
3 TraesCS7B01G350900 chr2A 96143447 96144888 1441 True 2532 2532 98.405 1 1439 1 chr2A.!!$R1 1438
4 TraesCS7B01G350900 chr6B 694413978 694415414 1436 True 2409 2409 96.886 1 1442 1 chr6B.!!$R1 1441
5 TraesCS7B01G350900 chr7D 119648747 119650183 1436 True 2113 2113 93.218 1 1440 1 chr7D.!!$R1 1439
6 TraesCS7B01G350900 chr7D 560248099 560248989 890 False 933 933 86.041 1484 2371 1 chr7D.!!$F1 887
7 TraesCS7B01G350900 chr1A 346750890 346751926 1036 True 1140 1140 86.428 138 1198 1 chr1A.!!$R1 1060
8 TraesCS7B01G350900 chr7A 644460911 644461811 900 False 789 789 82.839 1483 2408 1 chr7A.!!$F1 925
9 TraesCS7B01G350900 chr5D 289584119 289584812 693 True 584 584 82.083 1666 2378 1 chr5D.!!$R1 712
10 TraesCS7B01G350900 chr3D 34544695 34545387 692 False 536 536 80.860 1664 2378 1 chr3D.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 1.335872 CGTTGTTGCTGACCAAATCCC 60.336 52.381 0.0 0.0 34.68 3.85 F
1075 1076 4.982295 GCAACAAAGTGTTTCCTGGTATTC 59.018 41.667 0.0 0.0 38.77 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 1076 0.035881 TCAGCAAGCTCTGGTTCAGG 59.964 55.0 2.82 0.0 34.91 3.86 R
2182 2236 0.238289 CAATCACACTCGCACCCAAC 59.762 55.0 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 273 1.335872 CGTTGTTGCTGACCAAATCCC 60.336 52.381 0.00 0.00 34.68 3.85
1075 1076 4.982295 GCAACAAAGTGTTTCCTGGTATTC 59.018 41.667 0.00 0.00 38.77 1.75
1458 1466 3.979101 AAAAATGGCCCATTCGAACAT 57.021 38.095 9.93 0.00 32.43 2.71
1459 1467 2.965572 AAATGGCCCATTCGAACATG 57.034 45.000 9.93 0.00 32.43 3.21
1460 1468 2.142356 AATGGCCCATTCGAACATGA 57.858 45.000 2.23 0.00 26.27 3.07
1461 1469 1.683943 ATGGCCCATTCGAACATGAG 58.316 50.000 0.00 0.00 0.00 2.90
1462 1470 1.031571 TGGCCCATTCGAACATGAGC 61.032 55.000 0.00 0.00 0.00 4.26
1463 1471 1.353103 GCCCATTCGAACATGAGCG 59.647 57.895 0.00 2.29 0.00 5.03
1464 1472 1.089481 GCCCATTCGAACATGAGCGA 61.089 55.000 0.00 5.04 34.32 4.93
1465 1473 1.586422 CCCATTCGAACATGAGCGAT 58.414 50.000 13.55 0.00 36.31 4.58
1466 1474 1.528586 CCCATTCGAACATGAGCGATC 59.471 52.381 13.55 0.00 36.31 3.69
1467 1475 2.204237 CCATTCGAACATGAGCGATCA 58.796 47.619 5.53 5.53 36.31 2.92
1468 1476 2.220363 CCATTCGAACATGAGCGATCAG 59.780 50.000 10.08 4.04 36.31 2.90
1469 1477 2.654749 TTCGAACATGAGCGATCAGT 57.345 45.000 10.08 4.72 36.31 3.41
1470 1478 2.194800 TCGAACATGAGCGATCAGTC 57.805 50.000 10.08 5.65 0.00 3.51
1479 1487 2.415010 CGATCAGTCGGGAGGCAG 59.585 66.667 0.00 0.00 44.00 4.85
1480 1488 2.107953 GATCAGTCGGGAGGCAGC 59.892 66.667 0.00 0.00 36.50 5.25
1481 1489 2.364842 ATCAGTCGGGAGGCAGCT 60.365 61.111 0.00 0.00 36.50 4.24
1562 1570 0.256464 TCTCCTCTCTTCTCCCGTCC 59.744 60.000 0.00 0.00 0.00 4.79
1563 1571 0.033991 CTCCTCTCTTCTCCCGTCCA 60.034 60.000 0.00 0.00 0.00 4.02
1568 1584 1.850998 TCTCTTCTCCCGTCCATCCTA 59.149 52.381 0.00 0.00 0.00 2.94
1599 1621 1.066858 GTCCACCGATCAGCAGAAGAA 60.067 52.381 0.00 0.00 0.00 2.52
1610 1632 3.763360 TCAGCAGAAGAAAGAGAGAGAGG 59.237 47.826 0.00 0.00 0.00 3.69
1614 1636 3.701040 CAGAAGAAAGAGAGAGAGGGAGG 59.299 52.174 0.00 0.00 0.00 4.30
1615 1637 3.596046 AGAAGAAAGAGAGAGAGGGAGGA 59.404 47.826 0.00 0.00 0.00 3.71
1616 1638 3.382083 AGAAAGAGAGAGAGGGAGGAC 57.618 52.381 0.00 0.00 0.00 3.85
1621 1650 0.544697 AGAGAGAGGGAGGACGAGAC 59.455 60.000 0.00 0.00 0.00 3.36
1625 1654 1.820481 GAGGGAGGACGAGACGAGG 60.820 68.421 0.00 0.00 0.00 4.63
1628 1657 1.376942 GGAGGACGAGACGAGGACA 60.377 63.158 0.00 0.00 0.00 4.02
1640 1669 1.605058 CGAGGACAACGATGAGGGGT 61.605 60.000 0.00 0.00 0.00 4.95
1879 1918 1.781555 CGATGCGCGAGTTTGAGTT 59.218 52.632 12.10 0.00 44.57 3.01
1887 1926 1.411394 CGAGTTTGAGTTCCGCGTAA 58.589 50.000 4.92 0.00 0.00 3.18
1902 1941 0.647410 CGTAAGCTCGATTGCACTGG 59.353 55.000 0.00 0.00 34.99 4.00
1910 1949 0.957395 CGATTGCACTGGGCTCTGTT 60.957 55.000 2.50 0.00 45.15 3.16
1917 1961 0.183492 ACTGGGCTCTGTTTGCTTGA 59.817 50.000 0.00 0.00 0.00 3.02
1918 1962 1.321474 CTGGGCTCTGTTTGCTTGAA 58.679 50.000 0.00 0.00 0.00 2.69
1922 1966 2.560105 GGGCTCTGTTTGCTTGAATCTT 59.440 45.455 0.00 0.00 0.00 2.40
1923 1967 3.006217 GGGCTCTGTTTGCTTGAATCTTT 59.994 43.478 0.00 0.00 0.00 2.52
1928 1972 6.130298 TCTGTTTGCTTGAATCTTTTTCGA 57.870 33.333 0.00 0.00 0.00 3.71
1931 1975 6.988329 TGTTTGCTTGAATCTTTTTCGAAAC 58.012 32.000 10.79 0.00 0.00 2.78
1938 1982 2.774439 TCTTTTTCGAAACCAGCAGC 57.226 45.000 10.79 0.00 0.00 5.25
1971 2016 3.487563 AATTCAAATCGAAGCCCGTTC 57.512 42.857 0.00 0.00 36.95 3.95
1978 2023 2.434359 GAAGCCCGTTCGGGTCTG 60.434 66.667 27.49 6.52 46.85 3.51
1980 2025 2.240162 GAAGCCCGTTCGGGTCTGAT 62.240 60.000 27.49 13.24 46.85 2.90
1985 2030 1.287425 CCGTTCGGGTCTGATTTAGC 58.713 55.000 3.04 0.00 0.00 3.09
1991 2036 2.621000 GTCTGATTTAGCCGCGCG 59.379 61.111 25.67 25.67 0.00 6.86
1993 2038 1.876714 TCTGATTTAGCCGCGCGAC 60.877 57.895 34.63 22.66 0.00 5.19
2001 2046 2.044832 TAGCCGCGCGACTAGTTCTC 62.045 60.000 34.63 8.02 0.00 2.87
2012 2057 0.381089 CTAGTTCTCCGGTGCGTAGG 59.619 60.000 0.00 0.00 0.00 3.18
2029 2078 1.889573 GGATTAGCTGAGGCGTGCC 60.890 63.158 1.67 1.67 44.37 5.01
2075 2124 3.930229 CACGGGTTCGATTTACAGATCAA 59.070 43.478 0.00 0.00 40.11 2.57
2080 2129 7.027161 CGGGTTCGATTTACAGATCAATTTTT 58.973 34.615 0.00 0.00 39.00 1.94
2086 2135 7.284489 TCGATTTACAGATCAATTTTTAGGGGG 59.716 37.037 0.00 0.00 0.00 5.40
2122 2172 2.060050 TGGTTGGACGACCATTGTTT 57.940 45.000 7.61 0.00 44.53 2.83
2137 2187 7.360113 ACCATTGTTTCTGATTGGTACTTTT 57.640 32.000 0.00 0.00 38.87 2.27
2139 2189 7.069331 ACCATTGTTTCTGATTGGTACTTTTGA 59.931 33.333 0.00 0.00 38.87 2.69
2140 2190 8.090214 CCATTGTTTCTGATTGGTACTTTTGAT 58.910 33.333 0.00 0.00 0.00 2.57
2144 2194 7.393234 TGTTTCTGATTGGTACTTTTGATAGGG 59.607 37.037 0.00 0.00 0.00 3.53
2145 2195 6.636454 TCTGATTGGTACTTTTGATAGGGT 57.364 37.500 0.00 0.00 0.00 4.34
2146 2196 6.414732 TCTGATTGGTACTTTTGATAGGGTG 58.585 40.000 0.00 0.00 0.00 4.61
2182 2236 1.234821 TTTGCCAGCGTCTAGGTTTG 58.765 50.000 0.00 0.00 0.00 2.93
2185 2239 0.517316 GCCAGCGTCTAGGTTTGTTG 59.483 55.000 0.00 0.00 0.00 3.33
2207 2261 1.226491 GCGAGTGTGATTGGCATGC 60.226 57.895 9.90 9.90 0.00 4.06
2214 2268 0.896923 GTGATTGGCATGCAAGGGAA 59.103 50.000 21.36 3.97 0.00 3.97
2215 2271 1.483415 GTGATTGGCATGCAAGGGAAT 59.517 47.619 21.36 8.74 0.00 3.01
2217 2273 0.748450 ATTGGCATGCAAGGGAATCG 59.252 50.000 21.36 0.00 0.00 3.34
2232 2288 4.081198 AGGGAATCGCTATGAAGATGGATC 60.081 45.833 0.00 0.00 0.00 3.36
2274 2330 1.980765 TGCAGAGGGGATGTGGATATC 59.019 52.381 0.00 0.00 0.00 1.63
2306 2362 5.964958 AATGAGGAAATGTGGTTGTAGTG 57.035 39.130 0.00 0.00 0.00 2.74
2321 2381 5.350091 GGTTGTAGTGTTTTGTGCACAATTT 59.650 36.000 31.48 17.25 39.17 1.82
2357 2417 4.907457 ACCTCTTTGTGCAGGTGG 57.093 55.556 0.00 0.00 41.79 4.61
2378 2438 2.797177 ATTTCCTTCAGACTCCCTGC 57.203 50.000 0.00 0.00 42.62 4.85
2386 2446 0.247736 CAGACTCCCTGCTGTACCAC 59.752 60.000 0.00 0.00 35.89 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
272 273 2.892425 GGCTGATCGGGACTTGCG 60.892 66.667 3.14 0.00 0.00 4.85
1075 1076 0.035881 TCAGCAAGCTCTGGTTCAGG 59.964 55.000 2.82 0.00 34.91 3.86
1116 1117 2.156917 TCAGCTTGGCAGATGTTCAAG 58.843 47.619 11.20 11.20 37.70 3.02
1202 1203 0.716108 CACACTCGAACGATCTTGGC 59.284 55.000 0.00 0.00 0.00 4.52
1442 1450 1.683943 CTCATGTTCGAATGGGCCAT 58.316 50.000 14.78 14.78 0.00 4.40
1443 1451 1.031571 GCTCATGTTCGAATGGGCCA 61.032 55.000 9.61 9.61 46.50 5.36
1444 1452 1.729881 GCTCATGTTCGAATGGGCC 59.270 57.895 11.78 0.00 46.50 5.80
1446 1454 1.528586 GATCGCTCATGTTCGAATGGG 59.471 52.381 13.90 0.00 38.28 4.00
1447 1455 2.204237 TGATCGCTCATGTTCGAATGG 58.796 47.619 13.90 0.00 38.28 3.16
1448 1456 2.862536 ACTGATCGCTCATGTTCGAATG 59.137 45.455 13.90 0.00 38.28 2.67
1449 1457 3.119291 GACTGATCGCTCATGTTCGAAT 58.881 45.455 13.90 5.53 38.28 3.34
1450 1458 2.530177 GACTGATCGCTCATGTTCGAA 58.470 47.619 13.90 0.00 38.28 3.71
1451 1459 1.531883 CGACTGATCGCTCATGTTCGA 60.532 52.381 12.70 12.70 42.43 3.71
1452 1460 0.842613 CGACTGATCGCTCATGTTCG 59.157 55.000 0.00 0.00 42.43 3.95
1463 1471 1.965754 AAGCTGCCTCCCGACTGATC 61.966 60.000 0.00 0.00 0.00 2.92
1464 1472 1.992277 AAGCTGCCTCCCGACTGAT 60.992 57.895 0.00 0.00 0.00 2.90
1465 1473 2.604686 AAGCTGCCTCCCGACTGA 60.605 61.111 0.00 0.00 0.00 3.41
1466 1474 2.435586 CAAGCTGCCTCCCGACTG 60.436 66.667 0.00 0.00 0.00 3.51
1467 1475 3.710722 CCAAGCTGCCTCCCGACT 61.711 66.667 0.00 0.00 0.00 4.18
1468 1476 3.672295 CTCCAAGCTGCCTCCCGAC 62.672 68.421 0.00 0.00 0.00 4.79
1469 1477 3.393970 CTCCAAGCTGCCTCCCGA 61.394 66.667 0.00 0.00 0.00 5.14
1470 1478 4.479993 CCTCCAAGCTGCCTCCCG 62.480 72.222 0.00 0.00 0.00 5.14
1471 1479 4.811364 GCCTCCAAGCTGCCTCCC 62.811 72.222 0.00 0.00 0.00 4.30
1472 1480 4.811364 GGCCTCCAAGCTGCCTCC 62.811 72.222 4.80 0.00 42.01 4.30
1473 1481 4.811364 GGGCCTCCAAGCTGCCTC 62.811 72.222 11.44 0.00 44.71 4.70
1500 1508 2.656002 CTTCTAGAGACACGGATGGGA 58.344 52.381 0.00 0.00 0.00 4.37
1562 1570 4.262079 GGTGGACCGATAAAGAGTAGGATG 60.262 50.000 0.00 0.00 0.00 3.51
1563 1571 3.896272 GGTGGACCGATAAAGAGTAGGAT 59.104 47.826 0.00 0.00 0.00 3.24
1599 1621 1.211949 CTCGTCCTCCCTCTCTCTCTT 59.788 57.143 0.00 0.00 0.00 2.85
1610 1632 0.959372 TTGTCCTCGTCTCGTCCTCC 60.959 60.000 0.00 0.00 0.00 4.30
1614 1636 0.447011 ATCGTTGTCCTCGTCTCGTC 59.553 55.000 0.00 0.00 0.00 4.20
1615 1637 0.168348 CATCGTTGTCCTCGTCTCGT 59.832 55.000 0.00 0.00 0.00 4.18
1616 1638 0.446616 TCATCGTTGTCCTCGTCTCG 59.553 55.000 0.00 0.00 0.00 4.04
1621 1650 1.141881 CCCCTCATCGTTGTCCTCG 59.858 63.158 0.00 0.00 0.00 4.63
1625 1654 0.323629 TCCAACCCCTCATCGTTGTC 59.676 55.000 0.00 0.00 38.12 3.18
1628 1657 0.905357 CTCTCCAACCCCTCATCGTT 59.095 55.000 0.00 0.00 0.00 3.85
1640 1669 0.545309 CCACCACCTCCTCTCTCCAA 60.545 60.000 0.00 0.00 0.00 3.53
1810 1839 1.227645 TGGCGCTGGTATGAGATGC 60.228 57.895 7.64 0.00 0.00 3.91
1879 1918 1.876714 GCAATCGAGCTTACGCGGA 60.877 57.895 12.47 0.00 42.32 5.54
1887 1926 2.437359 GCCCAGTGCAATCGAGCT 60.437 61.111 0.00 0.00 40.77 4.09
1896 1935 1.458639 AAGCAAACAGAGCCCAGTGC 61.459 55.000 0.00 0.00 41.71 4.40
1902 1941 3.930634 AAGATTCAAGCAAACAGAGCC 57.069 42.857 0.00 0.00 0.00 4.70
1910 1949 5.655488 TGGTTTCGAAAAAGATTCAAGCAA 58.345 33.333 13.10 0.00 0.00 3.91
1917 1961 3.319122 AGCTGCTGGTTTCGAAAAAGATT 59.681 39.130 20.49 4.82 0.00 2.40
1918 1962 2.887152 AGCTGCTGGTTTCGAAAAAGAT 59.113 40.909 20.49 7.93 0.00 2.40
1922 1966 3.003275 CAGTAAGCTGCTGGTTTCGAAAA 59.997 43.478 13.10 0.00 35.77 2.29
1923 1967 2.548057 CAGTAAGCTGCTGGTTTCGAAA 59.452 45.455 13.39 6.47 35.77 3.46
1938 1982 7.072177 TCGATTTGAATTTGGTAGCAGTAAG 57.928 36.000 0.00 0.00 0.00 2.34
1971 2016 2.237751 CGCGGCTAAATCAGACCCG 61.238 63.158 0.00 0.00 41.72 5.28
1975 2020 1.876714 GTCGCGCGGCTAAATCAGA 60.877 57.895 29.62 0.73 0.00 3.27
1978 2023 0.594284 ACTAGTCGCGCGGCTAAATC 60.594 55.000 39.19 17.09 31.41 2.17
1980 2025 0.799534 GAACTAGTCGCGCGGCTAAA 60.800 55.000 39.19 24.66 31.41 1.85
1985 2030 2.278013 GGAGAACTAGTCGCGCGG 60.278 66.667 31.69 16.53 0.00 6.46
1988 2033 1.226323 CACCGGAGAACTAGTCGCG 60.226 63.158 9.46 0.00 0.00 5.87
1991 2036 1.063764 CTACGCACCGGAGAACTAGTC 59.936 57.143 9.46 0.00 40.79 2.59
1993 2038 0.381089 CCTACGCACCGGAGAACTAG 59.619 60.000 9.46 0.00 40.79 2.57
2001 2046 0.597637 CAGCTAATCCTACGCACCGG 60.598 60.000 0.00 0.00 0.00 5.28
2012 2057 3.724494 GGCACGCCTCAGCTAATC 58.276 61.111 0.00 0.00 36.60 1.75
2029 2078 2.186076 GTCATACGCTCCAACTTCTCG 58.814 52.381 0.00 0.00 0.00 4.04
2075 2124 4.741928 ACAGACTGAACCCCCTAAAAAT 57.258 40.909 10.08 0.00 0.00 1.82
2080 2129 2.409064 TGAACAGACTGAACCCCCTA 57.591 50.000 10.08 0.00 0.00 3.53
2086 2135 5.043248 CCAACCAATTTGAACAGACTGAAC 58.957 41.667 10.08 3.20 37.39 3.18
2122 2172 6.012858 ACACCCTATCAAAAGTACCAATCAGA 60.013 38.462 0.00 0.00 0.00 3.27
2146 2196 4.635765 TGGCAAATCTGAGTTGTAGCATAC 59.364 41.667 17.77 1.13 43.42 2.39
2182 2236 0.238289 CAATCACACTCGCACCCAAC 59.762 55.000 0.00 0.00 0.00 3.77
2185 2239 2.690778 GCCAATCACACTCGCACCC 61.691 63.158 0.00 0.00 0.00 4.61
2207 2261 3.750130 CCATCTTCATAGCGATTCCCTTG 59.250 47.826 0.00 0.00 0.00 3.61
2214 2268 4.525874 TGTCTGATCCATCTTCATAGCGAT 59.474 41.667 0.00 0.00 0.00 4.58
2215 2271 3.891366 TGTCTGATCCATCTTCATAGCGA 59.109 43.478 0.00 0.00 0.00 4.93
2217 2273 7.308469 GGAATTTGTCTGATCCATCTTCATAGC 60.308 40.741 0.00 0.00 32.08 2.97
2232 2288 2.227388 GACTGCAGGTGGAATTTGTCTG 59.773 50.000 19.93 0.00 0.00 3.51
2274 2330 5.393787 CCACATTTCCTCATTTCACCATCAG 60.394 44.000 0.00 0.00 0.00 2.90
2306 2362 3.242712 CACGAGGAAATTGTGCACAAAAC 59.757 43.478 34.06 25.13 39.55 2.43
2356 2416 3.615155 CAGGGAGTCTGAAGGAAATTCC 58.385 50.000 3.29 3.29 46.18 3.01
2357 2417 3.013219 GCAGGGAGTCTGAAGGAAATTC 58.987 50.000 0.00 0.00 46.18 2.17
2378 2438 2.514803 CCTTCAAAAGGGGTGGTACAG 58.485 52.381 0.00 0.00 45.27 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.