Multiple sequence alignment - TraesCS7B01G350600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G350600 chr7B 100.000 3624 0 0 1 3624 607908179 607911802 0.000000e+00 6693.0
1 TraesCS7B01G350600 chr7B 86.342 2072 197 38 867 2895 608183000 608185028 0.000000e+00 2180.0
2 TraesCS7B01G350600 chr7B 84.223 2041 219 41 867 2866 607927546 607929524 0.000000e+00 1890.0
3 TraesCS7B01G350600 chr7B 93.476 1211 52 11 2408 3592 607930278 607931487 0.000000e+00 1773.0
4 TraesCS7B01G350600 chr7A 92.681 2678 128 19 895 3536 644441196 644443841 0.000000e+00 3797.0
5 TraesCS7B01G350600 chr7A 86.853 1856 204 17 1059 2895 644456296 644458130 0.000000e+00 2039.0
6 TraesCS7B01G350600 chr7A 86.250 240 23 5 664 895 644421752 644421989 6.010000e-63 252.0
7 TraesCS7B01G350600 chr7D 93.798 1951 99 7 895 2836 560222165 560224102 0.000000e+00 2913.0
8 TraesCS7B01G350600 chr7D 91.452 737 35 10 2895 3605 560224172 560224906 0.000000e+00 987.0
9 TraesCS7B01G350600 chr7D 85.473 592 51 14 327 895 560217506 560218085 5.210000e-163 584.0
10 TraesCS7B01G350600 chr6B 74.255 1744 369 57 1106 2826 63768715 63767029 0.000000e+00 660.0
11 TraesCS7B01G350600 chr6B 73.077 1690 340 78 1106 2769 84566061 84567661 9.040000e-136 494.0
12 TraesCS7B01G350600 chr6B 80.335 478 73 8 2421 2895 171038970 171038511 3.460000e-90 342.0
13 TraesCS7B01G350600 chr6B 72.323 831 181 36 1073 1881 64003342 64002539 7.880000e-52 215.0
14 TraesCS7B01G350600 chr6B 80.180 222 34 4 2905 3125 84493188 84493400 1.350000e-34 158.0
15 TraesCS7B01G350600 chr6B 81.176 85 16 0 36 120 546088787 546088871 6.490000e-08 69.4
16 TraesCS7B01G350600 chrUn 74.752 1410 281 48 1479 2861 98357303 98355942 2.440000e-156 562.0
17 TraesCS7B01G350600 chrUn 73.207 1687 337 81 1117 2769 153390176 153391781 4.180000e-139 505.0
18 TraesCS7B01G350600 chrUn 75.353 1132 214 37 1046 2159 153436495 153435411 5.440000e-133 484.0
19 TraesCS7B01G350600 chrUn 81.567 217 30 4 2908 3123 153493019 153492812 1.730000e-38 171.0
20 TraesCS7B01G350600 chrUn 76.173 277 53 5 283 548 126948308 126948034 2.270000e-27 134.0
21 TraesCS7B01G350600 chrUn 75.694 144 32 3 2286 2428 372933785 372933926 6.490000e-08 69.4
22 TraesCS7B01G350600 chr6A 73.223 1576 317 74 1106 2645 48056944 48055438 3.270000e-130 475.0
23 TraesCS7B01G350600 chr6A 82.500 80 12 2 283 362 581227162 581227085 6.490000e-08 69.4
24 TraesCS7B01G350600 chr2D 79.455 477 77 8 2421 2895 278848124 278848581 5.840000e-83 318.0
25 TraesCS7B01G350600 chr2A 85.333 75 9 1 285 359 718495671 718495743 3.880000e-10 76.8
26 TraesCS7B01G350600 chr1B 75.694 144 32 3 2286 2428 113212639 113212498 6.490000e-08 69.4
27 TraesCS7B01G350600 chr1B 75.694 144 32 3 2286 2428 113315000 113314859 6.490000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G350600 chr7B 607908179 607911802 3623 False 6693.0 6693 100.0000 1 3624 1 chr7B.!!$F1 3623
1 TraesCS7B01G350600 chr7B 608183000 608185028 2028 False 2180.0 2180 86.3420 867 2895 1 chr7B.!!$F2 2028
2 TraesCS7B01G350600 chr7B 607927546 607931487 3941 False 1831.5 1890 88.8495 867 3592 2 chr7B.!!$F3 2725
3 TraesCS7B01G350600 chr7A 644441196 644443841 2645 False 3797.0 3797 92.6810 895 3536 1 chr7A.!!$F2 2641
4 TraesCS7B01G350600 chr7A 644456296 644458130 1834 False 2039.0 2039 86.8530 1059 2895 1 chr7A.!!$F3 1836
5 TraesCS7B01G350600 chr7D 560222165 560224906 2741 False 1950.0 2913 92.6250 895 3605 2 chr7D.!!$F2 2710
6 TraesCS7B01G350600 chr7D 560217506 560218085 579 False 584.0 584 85.4730 327 895 1 chr7D.!!$F1 568
7 TraesCS7B01G350600 chr6B 63767029 63768715 1686 True 660.0 660 74.2550 1106 2826 1 chr6B.!!$R1 1720
8 TraesCS7B01G350600 chr6B 84566061 84567661 1600 False 494.0 494 73.0770 1106 2769 1 chr6B.!!$F2 1663
9 TraesCS7B01G350600 chr6B 64002539 64003342 803 True 215.0 215 72.3230 1073 1881 1 chr6B.!!$R2 808
10 TraesCS7B01G350600 chrUn 98355942 98357303 1361 True 562.0 562 74.7520 1479 2861 1 chrUn.!!$R1 1382
11 TraesCS7B01G350600 chrUn 153390176 153391781 1605 False 505.0 505 73.2070 1117 2769 1 chrUn.!!$F1 1652
12 TraesCS7B01G350600 chrUn 153435411 153436495 1084 True 484.0 484 75.3530 1046 2159 1 chrUn.!!$R3 1113
13 TraesCS7B01G350600 chr6A 48055438 48056944 1506 True 475.0 475 73.2230 1106 2645 1 chr6A.!!$R1 1539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.037605 ATTTGAGCCTTGCAGCAAGC 60.038 50.0 27.32 21.63 39.85 4.01 F
193 194 0.326927 CCGCTTTTAGAACCTCCCCA 59.673 55.0 0.00 0.00 0.00 4.96 F
1891 1995 0.111639 GGGCCCTTTGTTACCTGTCA 59.888 55.0 17.04 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1627 0.593128 CTCTCGGGGCAAAACACAAG 59.407 55.0 0.00 0.00 0.00 3.16 R
1904 2008 0.614979 TGGTGCTACCTGGGAGACTC 60.615 60.0 11.01 2.14 39.58 3.36 R
3168 4561 0.622136 TGCAGCATTCAGTCCTGGAT 59.378 50.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.781548 AATTTCATGGAGCAATAATTTGAGC 57.218 32.000 0.00 0.00 34.60 4.26
28 29 4.924305 TCATGGAGCAATAATTTGAGCC 57.076 40.909 0.00 0.00 34.60 4.70
29 30 4.539726 TCATGGAGCAATAATTTGAGCCT 58.460 39.130 0.00 0.00 34.60 4.58
30 31 4.957954 TCATGGAGCAATAATTTGAGCCTT 59.042 37.500 0.00 0.00 34.60 4.35
31 32 4.724074 TGGAGCAATAATTTGAGCCTTG 57.276 40.909 0.00 0.00 34.60 3.61
32 33 3.119029 TGGAGCAATAATTTGAGCCTTGC 60.119 43.478 0.00 0.00 41.85 4.01
33 34 3.119029 GGAGCAATAATTTGAGCCTTGCA 60.119 43.478 8.12 0.00 43.49 4.08
34 35 4.110482 GAGCAATAATTTGAGCCTTGCAG 58.890 43.478 8.12 0.00 43.49 4.41
35 36 2.606272 GCAATAATTTGAGCCTTGCAGC 59.394 45.455 0.00 0.00 41.33 5.25
36 37 3.852286 CAATAATTTGAGCCTTGCAGCA 58.148 40.909 0.00 0.00 34.60 4.41
37 38 4.247258 CAATAATTTGAGCCTTGCAGCAA 58.753 39.130 7.81 7.81 34.60 3.91
38 39 2.450609 AATTTGAGCCTTGCAGCAAG 57.549 45.000 26.03 26.03 40.75 4.01
39 40 0.037605 ATTTGAGCCTTGCAGCAAGC 60.038 50.000 27.32 21.63 39.85 4.01
54 55 6.129053 GCAGCAAGCAATTTAGAGATAACT 57.871 37.500 0.00 0.00 44.79 2.24
55 56 6.558909 GCAGCAAGCAATTTAGAGATAACTT 58.441 36.000 0.00 0.00 44.79 2.66
56 57 7.031975 GCAGCAAGCAATTTAGAGATAACTTT 58.968 34.615 0.00 0.00 44.79 2.66
57 58 8.184192 GCAGCAAGCAATTTAGAGATAACTTTA 58.816 33.333 0.00 0.00 44.79 1.85
77 78 8.924511 ACTTTATATACCACATTGCATAAGCT 57.075 30.769 0.00 0.00 42.74 3.74
78 79 9.354673 ACTTTATATACCACATTGCATAAGCTT 57.645 29.630 3.48 3.48 42.74 3.74
82 83 4.970662 ACCACATTGCATAAGCTTACTG 57.029 40.909 8.70 9.53 42.74 2.74
83 84 4.335416 ACCACATTGCATAAGCTTACTGT 58.665 39.130 8.70 5.16 42.74 3.55
84 85 4.396166 ACCACATTGCATAAGCTTACTGTC 59.604 41.667 8.70 6.03 42.74 3.51
85 86 4.201950 CCACATTGCATAAGCTTACTGTCC 60.202 45.833 8.70 0.00 42.74 4.02
86 87 4.637534 CACATTGCATAAGCTTACTGTCCT 59.362 41.667 8.70 0.00 42.74 3.85
87 88 4.637534 ACATTGCATAAGCTTACTGTCCTG 59.362 41.667 8.70 3.18 42.74 3.86
88 89 4.551702 TTGCATAAGCTTACTGTCCTGA 57.448 40.909 8.70 0.00 42.74 3.86
89 90 4.551702 TGCATAAGCTTACTGTCCTGAA 57.448 40.909 8.70 0.00 42.74 3.02
90 91 5.102953 TGCATAAGCTTACTGTCCTGAAT 57.897 39.130 8.70 0.00 42.74 2.57
91 92 5.500234 TGCATAAGCTTACTGTCCTGAATT 58.500 37.500 8.70 0.00 42.74 2.17
92 93 5.355071 TGCATAAGCTTACTGTCCTGAATTG 59.645 40.000 8.70 0.00 42.74 2.32
93 94 5.220931 GCATAAGCTTACTGTCCTGAATTGG 60.221 44.000 8.70 0.00 37.91 3.16
94 95 3.356529 AGCTTACTGTCCTGAATTGGG 57.643 47.619 0.00 0.00 0.00 4.12
95 96 2.644798 AGCTTACTGTCCTGAATTGGGT 59.355 45.455 0.00 0.00 0.00 4.51
96 97 3.844211 AGCTTACTGTCCTGAATTGGGTA 59.156 43.478 0.00 0.00 0.00 3.69
97 98 4.288626 AGCTTACTGTCCTGAATTGGGTAA 59.711 41.667 0.00 0.00 0.00 2.85
98 99 4.395231 GCTTACTGTCCTGAATTGGGTAAC 59.605 45.833 0.00 0.00 0.00 2.50
99 100 5.803470 GCTTACTGTCCTGAATTGGGTAACT 60.803 44.000 0.00 0.00 0.00 2.24
100 101 4.724279 ACTGTCCTGAATTGGGTAACTT 57.276 40.909 0.00 0.00 0.00 2.66
101 102 5.061721 ACTGTCCTGAATTGGGTAACTTT 57.938 39.130 0.00 0.00 0.00 2.66
102 103 5.070685 ACTGTCCTGAATTGGGTAACTTTC 58.929 41.667 0.00 0.00 0.00 2.62
103 104 5.163088 ACTGTCCTGAATTGGGTAACTTTCT 60.163 40.000 0.00 0.00 0.00 2.52
104 105 5.313712 TGTCCTGAATTGGGTAACTTTCTC 58.686 41.667 0.00 0.00 0.00 2.87
105 106 5.163141 TGTCCTGAATTGGGTAACTTTCTCA 60.163 40.000 0.00 0.00 0.00 3.27
106 107 5.412904 GTCCTGAATTGGGTAACTTTCTCAG 59.587 44.000 0.00 0.00 0.00 3.35
107 108 4.702131 CCTGAATTGGGTAACTTTCTCAGG 59.298 45.833 0.00 0.00 0.00 3.86
108 109 5.514834 CCTGAATTGGGTAACTTTCTCAGGA 60.515 44.000 8.76 0.00 0.00 3.86
109 110 5.560724 TGAATTGGGTAACTTTCTCAGGAG 58.439 41.667 0.00 0.00 0.00 3.69
110 111 5.309543 TGAATTGGGTAACTTTCTCAGGAGA 59.690 40.000 0.00 0.00 35.27 3.71
111 112 5.843019 ATTGGGTAACTTTCTCAGGAGAA 57.157 39.130 7.62 7.62 44.94 2.87
112 113 5.843019 TTGGGTAACTTTCTCAGGAGAAT 57.157 39.130 12.17 1.33 45.78 2.40
113 114 5.843019 TGGGTAACTTTCTCAGGAGAATT 57.157 39.130 12.17 7.63 45.78 2.17
114 115 6.200878 TGGGTAACTTTCTCAGGAGAATTT 57.799 37.500 12.17 10.80 45.78 1.82
115 116 7.324388 TGGGTAACTTTCTCAGGAGAATTTA 57.676 36.000 12.17 9.97 45.78 1.40
116 117 7.166167 TGGGTAACTTTCTCAGGAGAATTTAC 58.834 38.462 21.71 21.71 45.78 2.01
117 118 7.612668 GGTAACTTTCTCAGGAGAATTTACC 57.387 40.000 27.02 27.02 46.01 2.85
118 119 7.395617 GGTAACTTTCTCAGGAGAATTTACCT 58.604 38.462 29.81 13.47 46.93 3.08
119 120 7.883833 GGTAACTTTCTCAGGAGAATTTACCTT 59.116 37.037 29.81 14.98 46.93 3.50
120 121 9.939802 GTAACTTTCTCAGGAGAATTTACCTTA 57.060 33.333 20.51 5.01 45.78 2.69
122 123 7.625469 ACTTTCTCAGGAGAATTTACCTTAGG 58.375 38.462 12.17 0.00 45.78 2.69
123 124 6.561519 TTCTCAGGAGAATTTACCTTAGGG 57.438 41.667 7.62 0.00 42.06 3.53
124 125 5.850278 TCTCAGGAGAATTTACCTTAGGGA 58.150 41.667 2.32 0.00 33.91 4.20
125 126 6.453476 TCTCAGGAGAATTTACCTTAGGGAT 58.547 40.000 2.32 0.00 33.91 3.85
126 127 6.909158 TCTCAGGAGAATTTACCTTAGGGATT 59.091 38.462 2.32 0.00 33.91 3.01
127 128 8.071854 TCTCAGGAGAATTTACCTTAGGGATTA 58.928 37.037 2.32 0.00 33.91 1.75
128 129 8.632731 TCAGGAGAATTTACCTTAGGGATTAA 57.367 34.615 2.32 0.00 33.91 1.40
129 130 8.491958 TCAGGAGAATTTACCTTAGGGATTAAC 58.508 37.037 2.32 0.00 33.91 2.01
130 131 8.272173 CAGGAGAATTTACCTTAGGGATTAACA 58.728 37.037 2.32 0.00 33.91 2.41
131 132 8.842764 AGGAGAATTTACCTTAGGGATTAACAA 58.157 33.333 2.32 0.00 36.25 2.83
132 133 9.642343 GGAGAATTTACCTTAGGGATTAACAAT 57.358 33.333 2.32 0.00 36.25 2.71
134 135 9.338622 AGAATTTACCTTAGGGATTAACAATCG 57.661 33.333 2.32 0.00 38.82 3.34
135 136 9.117183 GAATTTACCTTAGGGATTAACAATCGT 57.883 33.333 2.32 0.00 38.82 3.73
136 137 9.470399 AATTTACCTTAGGGATTAACAATCGTT 57.530 29.630 2.32 0.00 38.82 3.85
137 138 7.852971 TTACCTTAGGGATTAACAATCGTTG 57.147 36.000 2.32 0.00 38.82 4.10
138 139 5.812286 ACCTTAGGGATTAACAATCGTTGT 58.188 37.500 2.32 0.00 40.05 3.32
139 140 6.949715 ACCTTAGGGATTAACAATCGTTGTA 58.050 36.000 2.32 0.00 38.51 2.41
140 141 7.571025 ACCTTAGGGATTAACAATCGTTGTAT 58.429 34.615 2.32 0.00 38.51 2.29
141 142 7.713942 ACCTTAGGGATTAACAATCGTTGTATC 59.286 37.037 2.32 5.06 38.51 2.24
142 143 7.713507 CCTTAGGGATTAACAATCGTTGTATCA 59.286 37.037 4.24 0.00 37.63 2.15
143 144 9.273016 CTTAGGGATTAACAATCGTTGTATCAT 57.727 33.333 4.24 0.00 44.59 2.45
144 145 9.621629 TTAGGGATTAACAATCGTTGTATCATT 57.378 29.630 4.24 1.72 44.59 2.57
145 146 8.519799 AGGGATTAACAATCGTTGTATCATTT 57.480 30.769 4.24 0.00 44.59 2.32
146 147 8.621286 AGGGATTAACAATCGTTGTATCATTTC 58.379 33.333 4.24 0.00 44.59 2.17
147 148 8.402472 GGGATTAACAATCGTTGTATCATTTCA 58.598 33.333 4.24 0.00 44.59 2.69
148 149 9.781834 GGATTAACAATCGTTGTATCATTTCAA 57.218 29.630 4.24 0.00 44.59 2.69
150 151 8.958175 TTAACAATCGTTGTATCATTTCAACC 57.042 30.769 4.24 0.00 44.59 3.77
151 152 6.817765 ACAATCGTTGTATCATTTCAACCT 57.182 33.333 2.19 0.00 43.27 3.50
152 153 7.214467 ACAATCGTTGTATCATTTCAACCTT 57.786 32.000 2.19 0.00 43.27 3.50
153 154 7.083858 ACAATCGTTGTATCATTTCAACCTTG 58.916 34.615 0.00 0.00 43.27 3.61
154 155 6.817765 ATCGTTGTATCATTTCAACCTTGT 57.182 33.333 0.00 0.00 40.22 3.16
155 156 5.996219 TCGTTGTATCATTTCAACCTTGTG 58.004 37.500 0.00 0.00 40.22 3.33
156 157 5.049060 TCGTTGTATCATTTCAACCTTGTGG 60.049 40.000 0.00 0.00 40.22 4.17
157 158 4.782019 TGTATCATTTCAACCTTGTGGC 57.218 40.909 0.00 0.00 36.63 5.01
158 159 4.148079 TGTATCATTTCAACCTTGTGGCA 58.852 39.130 0.00 0.00 36.63 4.92
159 160 4.771577 TGTATCATTTCAACCTTGTGGCAT 59.228 37.500 0.00 0.00 36.63 4.40
160 161 3.940209 TCATTTCAACCTTGTGGCATC 57.060 42.857 0.00 0.00 36.63 3.91
161 162 3.229293 TCATTTCAACCTTGTGGCATCA 58.771 40.909 0.00 0.00 36.63 3.07
162 163 3.005684 TCATTTCAACCTTGTGGCATCAC 59.994 43.478 0.00 0.00 43.87 3.06
163 164 1.327303 TTCAACCTTGTGGCATCACC 58.673 50.000 0.00 0.00 42.98 4.02
164 165 0.478072 TCAACCTTGTGGCATCACCT 59.522 50.000 0.00 0.00 42.98 4.00
165 166 1.702401 TCAACCTTGTGGCATCACCTA 59.298 47.619 0.00 0.00 42.98 3.08
166 167 2.107378 TCAACCTTGTGGCATCACCTAA 59.893 45.455 0.00 0.00 42.98 2.69
167 168 2.489329 CAACCTTGTGGCATCACCTAAG 59.511 50.000 0.00 0.00 42.98 2.18
168 169 1.705186 ACCTTGTGGCATCACCTAAGT 59.295 47.619 0.00 0.00 42.98 2.24
169 170 2.086869 CCTTGTGGCATCACCTAAGTG 58.913 52.381 0.00 0.00 46.00 3.16
170 171 2.553028 CCTTGTGGCATCACCTAAGTGT 60.553 50.000 0.00 0.00 44.83 3.55
171 172 2.949177 TGTGGCATCACCTAAGTGTT 57.051 45.000 0.00 0.00 44.83 3.32
172 173 3.222173 TGTGGCATCACCTAAGTGTTT 57.778 42.857 0.00 0.00 44.83 2.83
173 174 4.359434 TGTGGCATCACCTAAGTGTTTA 57.641 40.909 0.00 0.00 44.83 2.01
174 175 4.069304 TGTGGCATCACCTAAGTGTTTAC 58.931 43.478 0.00 0.00 44.83 2.01
175 176 3.439129 GTGGCATCACCTAAGTGTTTACC 59.561 47.826 0.00 0.00 44.83 2.85
176 177 2.676342 GGCATCACCTAAGTGTTTACCG 59.324 50.000 0.00 0.00 44.83 4.02
177 178 2.095372 GCATCACCTAAGTGTTTACCGC 59.905 50.000 0.00 0.00 44.83 5.68
178 179 3.596214 CATCACCTAAGTGTTTACCGCT 58.404 45.455 0.00 0.00 44.83 5.52
179 180 3.756933 TCACCTAAGTGTTTACCGCTT 57.243 42.857 0.00 0.00 45.62 4.68
180 181 4.075963 TCACCTAAGTGTTTACCGCTTT 57.924 40.909 0.00 0.00 41.05 3.51
181 182 4.453751 TCACCTAAGTGTTTACCGCTTTT 58.546 39.130 0.00 0.00 41.05 2.27
182 183 5.609423 TCACCTAAGTGTTTACCGCTTTTA 58.391 37.500 0.00 0.00 41.05 1.52
183 184 5.697633 TCACCTAAGTGTTTACCGCTTTTAG 59.302 40.000 0.00 0.00 41.05 1.85
184 185 5.697633 CACCTAAGTGTTTACCGCTTTTAGA 59.302 40.000 0.00 0.00 41.05 2.10
185 186 6.203338 CACCTAAGTGTTTACCGCTTTTAGAA 59.797 38.462 0.00 0.00 41.05 2.10
186 187 6.203530 ACCTAAGTGTTTACCGCTTTTAGAAC 59.796 38.462 0.00 0.00 41.05 3.01
187 188 5.428496 AAGTGTTTACCGCTTTTAGAACC 57.572 39.130 0.00 0.00 41.05 3.62
188 189 4.711399 AGTGTTTACCGCTTTTAGAACCT 58.289 39.130 0.00 0.00 0.00 3.50
189 190 4.753610 AGTGTTTACCGCTTTTAGAACCTC 59.246 41.667 0.00 0.00 0.00 3.85
190 191 4.067192 TGTTTACCGCTTTTAGAACCTCC 58.933 43.478 0.00 0.00 0.00 4.30
191 192 3.339253 TTACCGCTTTTAGAACCTCCC 57.661 47.619 0.00 0.00 0.00 4.30
192 193 0.327259 ACCGCTTTTAGAACCTCCCC 59.673 55.000 0.00 0.00 0.00 4.81
193 194 0.326927 CCGCTTTTAGAACCTCCCCA 59.673 55.000 0.00 0.00 0.00 4.96
194 195 1.271707 CCGCTTTTAGAACCTCCCCAA 60.272 52.381 0.00 0.00 0.00 4.12
195 196 2.620627 CCGCTTTTAGAACCTCCCCAAT 60.621 50.000 0.00 0.00 0.00 3.16
196 197 3.089284 CGCTTTTAGAACCTCCCCAATT 58.911 45.455 0.00 0.00 0.00 2.32
197 198 4.266714 CGCTTTTAGAACCTCCCCAATTA 58.733 43.478 0.00 0.00 0.00 1.40
198 199 4.703093 CGCTTTTAGAACCTCCCCAATTAA 59.297 41.667 0.00 0.00 0.00 1.40
199 200 5.184287 CGCTTTTAGAACCTCCCCAATTAAA 59.816 40.000 0.00 0.00 0.00 1.52
200 201 6.625081 CGCTTTTAGAACCTCCCCAATTAAAG 60.625 42.308 0.00 0.00 0.00 1.85
201 202 6.599356 TTTTAGAACCTCCCCAATTAAAGC 57.401 37.500 0.00 0.00 0.00 3.51
202 203 3.825908 AGAACCTCCCCAATTAAAGCA 57.174 42.857 0.00 0.00 0.00 3.91
203 204 4.337264 AGAACCTCCCCAATTAAAGCAT 57.663 40.909 0.00 0.00 0.00 3.79
204 205 4.281657 AGAACCTCCCCAATTAAAGCATC 58.718 43.478 0.00 0.00 0.00 3.91
205 206 3.756082 ACCTCCCCAATTAAAGCATCA 57.244 42.857 0.00 0.00 0.00 3.07
206 207 4.270317 ACCTCCCCAATTAAAGCATCAT 57.730 40.909 0.00 0.00 0.00 2.45
207 208 4.218312 ACCTCCCCAATTAAAGCATCATC 58.782 43.478 0.00 0.00 0.00 2.92
208 209 3.254166 CCTCCCCAATTAAAGCATCATCG 59.746 47.826 0.00 0.00 0.00 3.84
209 210 3.885297 CTCCCCAATTAAAGCATCATCGT 59.115 43.478 0.00 0.00 0.00 3.73
210 211 3.631686 TCCCCAATTAAAGCATCATCGTG 59.368 43.478 0.00 0.00 0.00 4.35
211 212 3.374745 CCCAATTAAAGCATCATCGTGC 58.625 45.455 0.00 0.00 45.38 5.34
219 220 0.786581 GCATCATCGTGCATCTACCG 59.213 55.000 0.00 0.00 44.43 4.02
220 221 1.602920 GCATCATCGTGCATCTACCGA 60.603 52.381 0.00 0.00 44.43 4.69
221 222 2.742774 CATCATCGTGCATCTACCGAA 58.257 47.619 0.22 0.00 33.89 4.30
222 223 2.951457 TCATCGTGCATCTACCGAAA 57.049 45.000 0.22 0.00 33.89 3.46
223 224 2.536365 TCATCGTGCATCTACCGAAAC 58.464 47.619 0.22 0.00 33.89 2.78
224 225 1.593006 CATCGTGCATCTACCGAAACC 59.407 52.381 0.22 0.00 33.89 3.27
225 226 0.892755 TCGTGCATCTACCGAAACCT 59.107 50.000 0.00 0.00 0.00 3.50
226 227 1.274167 TCGTGCATCTACCGAAACCTT 59.726 47.619 0.00 0.00 0.00 3.50
227 228 2.073816 CGTGCATCTACCGAAACCTTT 58.926 47.619 0.00 0.00 0.00 3.11
228 229 2.482721 CGTGCATCTACCGAAACCTTTT 59.517 45.455 0.00 0.00 0.00 2.27
229 230 3.058501 CGTGCATCTACCGAAACCTTTTT 60.059 43.478 0.00 0.00 0.00 1.94
252 253 9.743057 TTTTTAAAACACATGTAAGTCATCAGG 57.257 29.630 0.00 0.00 34.09 3.86
253 254 5.376854 AAAACACATGTAAGTCATCAGGC 57.623 39.130 0.00 0.00 34.09 4.85
254 255 2.991250 ACACATGTAAGTCATCAGGCC 58.009 47.619 0.00 0.00 34.09 5.19
255 256 2.292267 CACATGTAAGTCATCAGGCCC 58.708 52.381 0.00 0.00 34.09 5.80
256 257 2.092753 CACATGTAAGTCATCAGGCCCT 60.093 50.000 0.00 0.00 34.09 5.19
257 258 2.092753 ACATGTAAGTCATCAGGCCCTG 60.093 50.000 3.69 3.69 34.09 4.45
258 259 1.951209 TGTAAGTCATCAGGCCCTGA 58.049 50.000 17.41 17.41 44.99 3.86
265 266 4.749323 TCAGGCCCTGATGCTTTG 57.251 55.556 10.05 0.00 35.39 2.77
266 267 2.077579 TCAGGCCCTGATGCTTTGA 58.922 52.632 10.05 0.00 35.39 2.69
267 268 0.405198 TCAGGCCCTGATGCTTTGAA 59.595 50.000 10.05 0.00 35.39 2.69
268 269 1.203038 TCAGGCCCTGATGCTTTGAAA 60.203 47.619 10.05 0.00 35.39 2.69
269 270 1.829222 CAGGCCCTGATGCTTTGAAAT 59.171 47.619 4.15 0.00 32.44 2.17
270 271 2.105766 AGGCCCTGATGCTTTGAAATC 58.894 47.619 0.00 0.00 0.00 2.17
271 272 1.826720 GGCCCTGATGCTTTGAAATCA 59.173 47.619 0.00 0.00 0.00 2.57
272 273 2.417787 GGCCCTGATGCTTTGAAATCAC 60.418 50.000 0.00 0.00 0.00 3.06
273 274 2.417787 GCCCTGATGCTTTGAAATCACC 60.418 50.000 0.00 0.00 0.00 4.02
274 275 2.827322 CCCTGATGCTTTGAAATCACCA 59.173 45.455 0.00 0.00 0.00 4.17
275 276 3.449737 CCCTGATGCTTTGAAATCACCAT 59.550 43.478 0.00 0.00 0.00 3.55
276 277 4.430007 CCTGATGCTTTGAAATCACCATG 58.570 43.478 0.00 0.00 0.00 3.66
277 278 3.852286 TGATGCTTTGAAATCACCATGC 58.148 40.909 0.00 0.00 0.00 4.06
278 279 3.258622 TGATGCTTTGAAATCACCATGCA 59.741 39.130 0.00 0.00 0.00 3.96
279 280 3.747854 TGCTTTGAAATCACCATGCAA 57.252 38.095 0.00 0.00 0.00 4.08
280 281 4.069300 TGCTTTGAAATCACCATGCAAA 57.931 36.364 0.00 0.00 0.00 3.68
281 282 4.643463 TGCTTTGAAATCACCATGCAAAT 58.357 34.783 0.00 0.00 0.00 2.32
282 283 5.791666 TGCTTTGAAATCACCATGCAAATA 58.208 33.333 0.00 0.00 0.00 1.40
283 284 6.228995 TGCTTTGAAATCACCATGCAAATAA 58.771 32.000 0.00 0.00 0.00 1.40
284 285 6.709397 TGCTTTGAAATCACCATGCAAATAAA 59.291 30.769 0.00 0.00 0.00 1.40
285 286 7.017055 GCTTTGAAATCACCATGCAAATAAAC 58.983 34.615 0.00 0.00 0.00 2.01
286 287 7.432350 TTTGAAATCACCATGCAAATAAACC 57.568 32.000 0.00 0.00 0.00 3.27
287 288 5.486526 TGAAATCACCATGCAAATAAACCC 58.513 37.500 0.00 0.00 0.00 4.11
288 289 5.248020 TGAAATCACCATGCAAATAAACCCT 59.752 36.000 0.00 0.00 0.00 4.34
289 290 6.438741 TGAAATCACCATGCAAATAAACCCTA 59.561 34.615 0.00 0.00 0.00 3.53
290 291 6.469782 AATCACCATGCAAATAAACCCTAG 57.530 37.500 0.00 0.00 0.00 3.02
291 292 4.277476 TCACCATGCAAATAAACCCTAGG 58.723 43.478 0.06 0.06 0.00 3.02
292 293 4.023291 CACCATGCAAATAAACCCTAGGT 58.977 43.478 8.29 0.00 37.65 3.08
293 294 4.097892 CACCATGCAAATAAACCCTAGGTC 59.902 45.833 8.29 0.00 33.12 3.85
294 295 4.017499 ACCATGCAAATAAACCCTAGGTCT 60.017 41.667 8.29 0.00 33.12 3.85
295 296 4.339247 CCATGCAAATAAACCCTAGGTCTG 59.661 45.833 8.29 0.00 33.12 3.51
296 297 4.919774 TGCAAATAAACCCTAGGTCTGA 57.080 40.909 8.29 0.00 33.12 3.27
297 298 4.585879 TGCAAATAAACCCTAGGTCTGAC 58.414 43.478 8.29 0.00 33.12 3.51
298 299 3.945921 GCAAATAAACCCTAGGTCTGACC 59.054 47.826 19.20 19.20 38.99 4.02
299 300 4.524053 CAAATAAACCCTAGGTCTGACCC 58.476 47.826 22.81 5.74 39.75 4.46
300 301 3.797671 ATAAACCCTAGGTCTGACCCT 57.202 47.619 22.81 12.69 39.75 4.34
301 302 4.913154 ATAAACCCTAGGTCTGACCCTA 57.087 45.455 22.81 13.12 39.75 3.53
302 303 3.572661 AAACCCTAGGTCTGACCCTAA 57.427 47.619 22.81 8.43 39.75 2.69
303 304 3.797671 AACCCTAGGTCTGACCCTAAT 57.202 47.619 22.81 7.37 39.75 1.73
304 305 3.797671 ACCCTAGGTCTGACCCTAATT 57.202 47.619 22.81 6.98 39.75 1.40
305 306 3.385115 ACCCTAGGTCTGACCCTAATTG 58.615 50.000 22.81 9.68 39.75 2.32
306 307 2.706190 CCCTAGGTCTGACCCTAATTGG 59.294 54.545 22.81 13.91 39.75 3.16
307 308 3.385115 CCTAGGTCTGACCCTAATTGGT 58.615 50.000 22.81 4.77 39.75 3.67
308 309 3.780850 CCTAGGTCTGACCCTAATTGGTT 59.219 47.826 22.81 4.04 39.75 3.67
309 310 4.966805 CCTAGGTCTGACCCTAATTGGTTA 59.033 45.833 22.81 5.01 39.75 2.85
310 311 5.607171 CCTAGGTCTGACCCTAATTGGTTAT 59.393 44.000 22.81 2.79 39.75 1.89
311 312 6.785963 CCTAGGTCTGACCCTAATTGGTTATA 59.214 42.308 22.81 3.83 39.75 0.98
312 313 7.458170 CCTAGGTCTGACCCTAATTGGTTATAT 59.542 40.741 22.81 2.15 39.75 0.86
313 314 7.317722 AGGTCTGACCCTAATTGGTTATATC 57.682 40.000 22.81 0.00 39.75 1.63
314 315 7.082972 AGGTCTGACCCTAATTGGTTATATCT 58.917 38.462 22.81 0.00 39.75 1.98
315 316 7.016661 AGGTCTGACCCTAATTGGTTATATCTG 59.983 40.741 22.81 0.00 39.75 2.90
316 317 7.016268 GGTCTGACCCTAATTGGTTATATCTGA 59.984 40.741 16.14 0.00 39.24 3.27
317 318 7.873505 GTCTGACCCTAATTGGTTATATCTGAC 59.126 40.741 0.00 0.00 39.24 3.51
318 319 7.567250 TCTGACCCTAATTGGTTATATCTGACA 59.433 37.037 0.00 0.00 39.24 3.58
319 320 8.096621 TGACCCTAATTGGTTATATCTGACAA 57.903 34.615 0.00 0.00 39.24 3.18
320 321 8.723365 TGACCCTAATTGGTTATATCTGACAAT 58.277 33.333 0.00 0.00 39.24 2.71
321 322 8.924511 ACCCTAATTGGTTATATCTGACAATG 57.075 34.615 0.00 0.00 33.91 2.82
322 323 7.944554 ACCCTAATTGGTTATATCTGACAATGG 59.055 37.037 0.00 0.00 33.91 3.16
323 324 7.094205 CCCTAATTGGTTATATCTGACAATGGC 60.094 40.741 0.00 0.00 32.60 4.40
324 325 5.947228 ATTGGTTATATCTGACAATGGCG 57.053 39.130 0.00 0.00 31.19 5.69
325 326 3.738982 TGGTTATATCTGACAATGGCGG 58.261 45.455 0.00 0.00 0.00 6.13
334 335 1.478510 TGACAATGGCGGTGTTTTTGT 59.521 42.857 0.00 0.00 33.47 2.83
363 364 4.766373 TGCCTTATTGAAGACATTGCTCAA 59.234 37.500 0.00 0.56 34.25 3.02
365 366 5.574443 GCCTTATTGAAGACATTGCTCAAAC 59.426 40.000 1.87 0.00 34.25 2.93
379 389 8.829612 ACATTGCTCAAACTTTTATTTTCAAGG 58.170 29.630 0.00 0.00 0.00 3.61
406 416 8.364142 TGTAAATTAAGGATTTGACCTTTGGTG 58.636 33.333 5.32 0.00 46.61 4.17
413 423 4.217767 GGATTTGACCTTTGGTGGTTAGAC 59.782 45.833 0.00 0.00 41.00 2.59
421 431 3.587797 TTGGTGGTTAGACTCGATGAC 57.412 47.619 0.00 0.00 0.00 3.06
426 436 2.815503 TGGTTAGACTCGATGACAACGA 59.184 45.455 7.62 7.62 38.11 3.85
431 441 2.095668 AGACTCGATGACAACGACACTC 60.096 50.000 3.42 0.06 35.88 3.51
434 444 1.136057 TCGATGACAACGACACTCGAG 60.136 52.381 11.84 11.84 43.74 4.04
435 445 1.618861 GATGACAACGACACTCGAGG 58.381 55.000 18.41 8.36 43.74 4.63
437 447 1.733399 GACAACGACACTCGAGGGC 60.733 63.158 16.39 6.82 43.74 5.19
439 449 1.006102 CAACGACACTCGAGGGCTT 60.006 57.895 16.39 0.19 43.74 4.35
457 467 3.829026 GGCTTTTCCCTTTCTGAAGACAT 59.171 43.478 0.00 0.00 34.71 3.06
458 468 4.082517 GGCTTTTCCCTTTCTGAAGACATC 60.083 45.833 0.00 0.00 34.71 3.06
463 473 3.119101 TCCCTTTCTGAAGACATCGCTAC 60.119 47.826 0.00 0.00 34.71 3.58
470 480 3.089284 TGAAGACATCGCTACTGGAGAA 58.911 45.455 0.00 0.00 0.00 2.87
494 504 8.579682 AAACTTTCTCATTGTCTTTGTAATGC 57.420 30.769 0.00 0.00 34.96 3.56
517 527 1.064906 AGAGATGGTTGGTGCAGATGG 60.065 52.381 0.00 0.00 0.00 3.51
540 550 4.001652 TCGTTGTTGTAGTTTGTTGACCA 58.998 39.130 0.00 0.00 0.00 4.02
551 561 5.410067 AGTTTGTTGACCACTGTTTTGATG 58.590 37.500 0.00 0.00 0.00 3.07
558 568 3.030291 ACCACTGTTTTGATGGCTTCAA 58.970 40.909 11.38 11.38 42.62 2.69
591 601 6.555463 TTCCTTCCACCTAGGTATAGTTTG 57.445 41.667 15.80 0.00 39.02 2.93
605 622 6.014156 AGGTATAGTTTGAGTGACTTTGCTCT 60.014 38.462 0.00 0.00 33.22 4.09
608 625 5.904362 AGTTTGAGTGACTTTGCTCTTTT 57.096 34.783 0.00 0.00 33.22 2.27
609 626 8.677148 ATAGTTTGAGTGACTTTGCTCTTTTA 57.323 30.769 0.00 0.00 33.22 1.52
611 628 8.000780 AGTTTGAGTGACTTTGCTCTTTTATT 57.999 30.769 0.00 0.00 33.22 1.40
612 629 8.470002 AGTTTGAGTGACTTTGCTCTTTTATTT 58.530 29.630 0.00 0.00 33.22 1.40
613 630 9.087424 GTTTGAGTGACTTTGCTCTTTTATTTT 57.913 29.630 0.00 0.00 33.22 1.82
614 631 9.651913 TTTGAGTGACTTTGCTCTTTTATTTTT 57.348 25.926 0.00 0.00 33.22 1.94
637 654 4.769688 TCGCACTGGAATTCTAATCATGT 58.230 39.130 5.23 0.00 0.00 3.21
642 659 5.471456 CACTGGAATTCTAATCATGTAGGGC 59.529 44.000 5.23 0.00 0.00 5.19
646 663 5.221925 GGAATTCTAATCATGTAGGGCCTGA 60.222 44.000 18.53 5.89 0.00 3.86
653 670 2.308570 TCATGTAGGGCCTGATGTGTTT 59.691 45.455 18.53 0.00 0.00 2.83
659 676 4.806640 AGGGCCTGATGTGTTTTTATTG 57.193 40.909 4.50 0.00 0.00 1.90
664 681 6.073276 GGGCCTGATGTGTTTTTATTGTTTTC 60.073 38.462 0.84 0.00 0.00 2.29
678 695 5.934935 ATTGTTTTCGTATTCTTCCGTGT 57.065 34.783 0.00 0.00 0.00 4.49
709 726 6.494893 TGAGTCAATAAAATCCGTCCTTTG 57.505 37.500 0.00 0.00 0.00 2.77
717 734 8.987890 CAATAAAATCCGTCCTTTGTCAAAATT 58.012 29.630 0.00 0.00 0.00 1.82
792 817 6.924060 CGTCTCCTACCGAAATTCATAAATCT 59.076 38.462 0.00 0.00 0.00 2.40
794 819 7.115095 GTCTCCTACCGAAATTCATAAATCTCG 59.885 40.741 0.00 0.00 35.56 4.04
845 870 1.134220 TCCCACGCAAACAAAGAGAGT 60.134 47.619 0.00 0.00 0.00 3.24
846 871 1.002468 CCCACGCAAACAAAGAGAGTG 60.002 52.381 0.00 0.00 0.00 3.51
861 886 4.160329 AGAGAGTGGGTATGAAGTGTCAA 58.840 43.478 0.00 0.00 37.30 3.18
877 902 2.158385 TGTCAATTTGGCCAACCCTAGT 60.158 45.455 20.35 0.00 33.59 2.57
988 1032 3.508840 CAAATCTGCCGTCCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
1470 1556 1.134818 AGCTGCGATGAACGTAATCCA 60.135 47.619 0.00 0.00 44.60 3.41
1719 1808 2.892425 CTCCATGTTCGCTCGCCC 60.892 66.667 0.00 0.00 0.00 6.13
1851 1955 3.811497 GTGGTACTATCCGGGTAATTTGC 59.189 47.826 0.00 0.00 0.00 3.68
1891 1995 0.111639 GGGCCCTTTGTTACCTGTCA 59.888 55.000 17.04 0.00 0.00 3.58
1904 2008 0.179089 CCTGTCATCTCCAAGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
1980 2116 8.636213 CCTAGTTTCCTACACGGAGATAAATTA 58.364 37.037 0.00 0.00 44.28 1.40
2076 2220 5.241506 TGAAGATTTTGGCTCTTAGGTGTTG 59.758 40.000 0.00 0.00 33.18 3.33
2103 2247 8.159447 TGGATATGAATTGGATGGAGTTCTTAG 58.841 37.037 0.00 0.00 0.00 2.18
2181 2327 9.448438 TCATCTTTGCTTGCTTTATAACTTCTA 57.552 29.630 0.00 0.00 0.00 2.10
2214 2373 7.990917 TGACATCTTGTTTGTTACTGCTTTAA 58.009 30.769 0.00 0.00 0.00 1.52
2223 2382 9.834628 TGTTTGTTACTGCTTTAATAATACAGC 57.165 29.630 3.59 0.00 35.76 4.40
2318 2480 5.355630 CCTCAGTATGACCGACTATATCCAG 59.644 48.000 0.00 0.00 42.56 3.86
2346 2508 2.498885 GCCTTCAAGCCCATCTCAAAAT 59.501 45.455 0.00 0.00 0.00 1.82
2348 2510 4.160252 GCCTTCAAGCCCATCTCAAAATAA 59.840 41.667 0.00 0.00 0.00 1.40
2389 2551 2.961062 GGGCCATGATAAACAGCTTGAT 59.039 45.455 4.39 0.00 0.00 2.57
2626 3971 2.036089 CCCCTTCGAACAGCTATAGACC 59.964 54.545 3.21 0.00 0.00 3.85
2631 3977 1.269102 CGAACAGCTATAGACCGGGTG 60.269 57.143 3.30 0.00 35.04 4.61
2645 3991 0.533755 CGGGTGGATGCCTGAAGATC 60.534 60.000 0.00 0.00 37.06 2.75
2652 3998 3.934684 GCCTGAAGATCGCGCTGC 61.935 66.667 5.56 0.00 0.00 5.25
2738 4087 5.293079 GCATAGACCTGCTCTTTTTCTAGTG 59.707 44.000 0.00 0.00 39.12 2.74
3022 4406 6.697019 TGTTTGCTTGCTGATTTAGTTTTCTC 59.303 34.615 0.00 0.00 0.00 2.87
3038 4422 2.941453 TCTCCGAGTGTTCATACAGC 57.059 50.000 0.00 0.00 34.24 4.40
3129 4513 9.877178 GAGAGGTTTCTGTTATTTTCTATCAGA 57.123 33.333 0.00 0.00 32.53 3.27
3324 4718 1.134560 CCTACTCGCCTGGTAGTTGAC 59.865 57.143 8.76 0.00 36.02 3.18
3402 4813 3.473625 CCTTTCCTGTACCAAGAAACGT 58.526 45.455 0.00 0.00 0.00 3.99
3419 4838 2.643551 ACGTCATTGGATTGGGCTTAG 58.356 47.619 0.00 0.00 0.00 2.18
3472 4891 2.162208 GGTTATCCTCGTGTCGTGTGTA 59.838 50.000 0.00 0.00 0.00 2.90
3507 4928 5.276963 CGCATCAACTTGTTTTTCTGCATTT 60.277 36.000 0.00 0.00 0.00 2.32
3554 4976 3.382546 AGTTGTTTTCTGCATTGCTGACT 59.617 39.130 16.67 8.26 36.32 3.41
3612 5039 3.896479 GCTTTTGCGGGAGGAGAG 58.104 61.111 0.00 0.00 34.86 3.20
3613 5040 2.402572 GCTTTTGCGGGAGGAGAGC 61.403 63.158 0.00 0.00 35.06 4.09
3614 5041 1.746991 CTTTTGCGGGAGGAGAGCC 60.747 63.158 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.485206 GCTCAAATTATTGCTCCATGAAATTAT 57.515 29.630 0.00 0.00 36.45 1.28
2 3 7.927629 GGCTCAAATTATTGCTCCATGAAATTA 59.072 33.333 0.00 0.00 36.45 1.40
3 4 6.764560 GGCTCAAATTATTGCTCCATGAAATT 59.235 34.615 0.00 0.00 36.45 1.82
4 5 6.099269 AGGCTCAAATTATTGCTCCATGAAAT 59.901 34.615 0.00 0.00 36.45 2.17
5 6 5.422970 AGGCTCAAATTATTGCTCCATGAAA 59.577 36.000 0.00 0.00 36.45 2.69
6 7 4.957954 AGGCTCAAATTATTGCTCCATGAA 59.042 37.500 0.00 0.00 36.45 2.57
7 8 4.539726 AGGCTCAAATTATTGCTCCATGA 58.460 39.130 0.00 0.00 36.45 3.07
8 9 4.931661 AGGCTCAAATTATTGCTCCATG 57.068 40.909 0.00 0.00 36.45 3.66
9 10 4.442472 GCAAGGCTCAAATTATTGCTCCAT 60.442 41.667 1.20 0.00 42.24 3.41
10 11 3.119029 GCAAGGCTCAAATTATTGCTCCA 60.119 43.478 1.20 0.00 42.24 3.86
11 12 3.119029 TGCAAGGCTCAAATTATTGCTCC 60.119 43.478 9.33 0.00 44.99 4.70
12 13 4.110482 CTGCAAGGCTCAAATTATTGCTC 58.890 43.478 9.33 0.00 44.99 4.26
13 14 3.677976 GCTGCAAGGCTCAAATTATTGCT 60.678 43.478 9.33 0.00 44.99 3.91
14 15 2.606272 GCTGCAAGGCTCAAATTATTGC 59.394 45.455 0.00 1.44 44.97 3.56
15 16 3.852286 TGCTGCAAGGCTCAAATTATTG 58.148 40.909 0.00 0.00 37.92 1.90
16 17 4.501071 CTTGCTGCAAGGCTCAAATTATT 58.499 39.130 29.91 0.00 37.77 1.40
17 18 3.677976 GCTTGCTGCAAGGCTCAAATTAT 60.678 43.478 35.43 0.00 41.31 1.28
18 19 2.353011 GCTTGCTGCAAGGCTCAAATTA 60.353 45.455 35.43 3.45 41.31 1.40
19 20 1.607251 GCTTGCTGCAAGGCTCAAATT 60.607 47.619 35.43 0.00 41.31 1.82
20 21 0.037605 GCTTGCTGCAAGGCTCAAAT 60.038 50.000 35.43 0.00 41.31 2.32
21 22 1.364901 GCTTGCTGCAAGGCTCAAA 59.635 52.632 35.43 5.42 41.31 2.69
22 23 3.045142 GCTTGCTGCAAGGCTCAA 58.955 55.556 35.43 6.16 41.31 3.02
31 32 6.129053 AGTTATCTCTAAATTGCTTGCTGC 57.871 37.500 0.00 0.00 43.25 5.25
51 52 9.354673 AGCTTATGCAATGTGGTATATAAAGTT 57.645 29.630 3.16 0.00 42.74 2.66
52 53 8.924511 AGCTTATGCAATGTGGTATATAAAGT 57.075 30.769 3.16 0.00 42.74 2.66
56 57 9.435688 CAGTAAGCTTATGCAATGTGGTATATA 57.564 33.333 9.88 0.00 42.74 0.86
57 58 7.939039 ACAGTAAGCTTATGCAATGTGGTATAT 59.061 33.333 9.88 0.00 42.74 0.86
58 59 7.279615 ACAGTAAGCTTATGCAATGTGGTATA 58.720 34.615 9.88 0.00 42.74 1.47
59 60 6.122277 ACAGTAAGCTTATGCAATGTGGTAT 58.878 36.000 9.88 0.00 42.74 2.73
60 61 5.496556 ACAGTAAGCTTATGCAATGTGGTA 58.503 37.500 9.88 0.00 42.74 3.25
61 62 4.335416 ACAGTAAGCTTATGCAATGTGGT 58.665 39.130 9.88 0.00 42.74 4.16
62 63 4.201950 GGACAGTAAGCTTATGCAATGTGG 60.202 45.833 9.88 0.00 42.74 4.17
63 64 4.637534 AGGACAGTAAGCTTATGCAATGTG 59.362 41.667 9.88 2.25 42.74 3.21
64 65 4.637534 CAGGACAGTAAGCTTATGCAATGT 59.362 41.667 9.88 4.49 42.74 2.71
65 66 4.877823 TCAGGACAGTAAGCTTATGCAATG 59.122 41.667 9.88 0.84 42.74 2.82
66 67 5.102953 TCAGGACAGTAAGCTTATGCAAT 57.897 39.130 9.88 0.00 42.74 3.56
67 68 4.551702 TCAGGACAGTAAGCTTATGCAA 57.448 40.909 9.88 0.00 42.74 4.08
68 69 4.551702 TTCAGGACAGTAAGCTTATGCA 57.448 40.909 9.88 0.00 42.74 3.96
69 70 5.220931 CCAATTCAGGACAGTAAGCTTATGC 60.221 44.000 9.88 0.00 40.05 3.14
70 71 5.297776 CCCAATTCAGGACAGTAAGCTTATG 59.702 44.000 9.88 11.13 0.00 1.90
71 72 5.044846 ACCCAATTCAGGACAGTAAGCTTAT 60.045 40.000 9.88 0.00 0.00 1.73
72 73 4.288626 ACCCAATTCAGGACAGTAAGCTTA 59.711 41.667 0.86 0.86 0.00 3.09
73 74 3.074538 ACCCAATTCAGGACAGTAAGCTT 59.925 43.478 3.48 3.48 0.00 3.74
74 75 2.644798 ACCCAATTCAGGACAGTAAGCT 59.355 45.455 0.00 0.00 0.00 3.74
75 76 3.073274 ACCCAATTCAGGACAGTAAGC 57.927 47.619 0.00 0.00 0.00 3.09
76 77 5.805728 AGTTACCCAATTCAGGACAGTAAG 58.194 41.667 0.00 0.00 0.00 2.34
77 78 5.836024 AGTTACCCAATTCAGGACAGTAA 57.164 39.130 0.00 0.00 0.00 2.24
78 79 5.836024 AAGTTACCCAATTCAGGACAGTA 57.164 39.130 0.00 0.00 0.00 2.74
79 80 4.724279 AAGTTACCCAATTCAGGACAGT 57.276 40.909 0.00 0.00 0.00 3.55
80 81 5.316987 AGAAAGTTACCCAATTCAGGACAG 58.683 41.667 0.00 0.00 0.00 3.51
81 82 5.163141 TGAGAAAGTTACCCAATTCAGGACA 60.163 40.000 0.00 0.00 0.00 4.02
82 83 5.313712 TGAGAAAGTTACCCAATTCAGGAC 58.686 41.667 0.00 0.00 0.00 3.85
83 84 5.560724 CTGAGAAAGTTACCCAATTCAGGA 58.439 41.667 0.00 0.00 0.00 3.86
84 85 4.702131 CCTGAGAAAGTTACCCAATTCAGG 59.298 45.833 3.13 3.13 42.96 3.86
85 86 5.560724 TCCTGAGAAAGTTACCCAATTCAG 58.439 41.667 0.00 0.00 0.00 3.02
86 87 5.309543 TCTCCTGAGAAAGTTACCCAATTCA 59.690 40.000 0.00 0.00 33.91 2.57
87 88 5.805728 TCTCCTGAGAAAGTTACCCAATTC 58.194 41.667 0.00 0.00 33.91 2.17
88 89 5.843019 TCTCCTGAGAAAGTTACCCAATT 57.157 39.130 0.00 0.00 33.91 2.32
89 90 5.843019 TTCTCCTGAGAAAGTTACCCAAT 57.157 39.130 7.12 0.00 43.79 3.16
101 102 5.850278 TCCCTAAGGTAAATTCTCCTGAGA 58.150 41.667 12.38 0.00 34.95 3.27
102 103 6.755542 ATCCCTAAGGTAAATTCTCCTGAG 57.244 41.667 6.36 6.36 33.97 3.35
103 104 8.491958 GTTAATCCCTAAGGTAAATTCTCCTGA 58.508 37.037 2.73 0.00 33.97 3.86
104 105 8.272173 TGTTAATCCCTAAGGTAAATTCTCCTG 58.728 37.037 2.73 0.00 33.97 3.86
105 106 8.401955 TGTTAATCCCTAAGGTAAATTCTCCT 57.598 34.615 0.00 0.00 35.34 3.69
106 107 9.642343 ATTGTTAATCCCTAAGGTAAATTCTCC 57.358 33.333 0.00 0.00 0.00 3.71
108 109 9.338622 CGATTGTTAATCCCTAAGGTAAATTCT 57.661 33.333 0.00 0.00 34.35 2.40
109 110 9.117183 ACGATTGTTAATCCCTAAGGTAAATTC 57.883 33.333 0.00 0.00 34.35 2.17
110 111 9.470399 AACGATTGTTAATCCCTAAGGTAAATT 57.530 29.630 0.00 0.00 36.28 1.82
111 112 8.899771 CAACGATTGTTAATCCCTAAGGTAAAT 58.100 33.333 0.00 0.00 36.28 1.40
112 113 7.884354 ACAACGATTGTTAATCCCTAAGGTAAA 59.116 33.333 0.00 0.00 42.22 2.01
113 114 7.396418 ACAACGATTGTTAATCCCTAAGGTAA 58.604 34.615 0.00 0.00 42.22 2.85
114 115 6.949715 ACAACGATTGTTAATCCCTAAGGTA 58.050 36.000 0.00 0.00 42.22 3.08
115 116 5.812286 ACAACGATTGTTAATCCCTAAGGT 58.188 37.500 0.00 0.00 42.22 3.50
116 117 7.713507 TGATACAACGATTGTTAATCCCTAAGG 59.286 37.037 13.83 0.00 42.22 2.69
117 118 8.657074 TGATACAACGATTGTTAATCCCTAAG 57.343 34.615 13.83 0.00 42.22 2.18
118 119 9.621629 AATGATACAACGATTGTTAATCCCTAA 57.378 29.630 13.83 1.66 42.22 2.69
119 120 9.621629 AAATGATACAACGATTGTTAATCCCTA 57.378 29.630 13.83 1.91 42.22 3.53
120 121 8.519799 AAATGATACAACGATTGTTAATCCCT 57.480 30.769 13.83 3.83 42.22 4.20
121 122 8.402472 TGAAATGATACAACGATTGTTAATCCC 58.598 33.333 13.83 5.68 42.22 3.85
122 123 9.781834 TTGAAATGATACAACGATTGTTAATCC 57.218 29.630 13.83 4.09 42.22 3.01
124 125 9.567848 GGTTGAAATGATACAACGATTGTTAAT 57.432 29.630 0.00 0.00 42.22 1.40
125 126 8.788806 AGGTTGAAATGATACAACGATTGTTAA 58.211 29.630 0.00 0.00 42.22 2.01
126 127 8.330466 AGGTTGAAATGATACAACGATTGTTA 57.670 30.769 0.00 0.00 42.22 2.41
127 128 7.214467 AGGTTGAAATGATACAACGATTGTT 57.786 32.000 8.33 0.00 42.22 2.83
128 129 6.817765 AGGTTGAAATGATACAACGATTGT 57.182 33.333 0.00 8.15 44.68 2.71
129 130 7.060979 CACAAGGTTGAAATGATACAACGATTG 59.939 37.037 18.36 18.36 44.68 2.67
130 131 7.083858 CACAAGGTTGAAATGATACAACGATT 58.916 34.615 0.00 0.00 44.68 3.34
131 132 6.349280 CCACAAGGTTGAAATGATACAACGAT 60.349 38.462 0.00 0.00 44.68 3.73
132 133 5.049060 CCACAAGGTTGAAATGATACAACGA 60.049 40.000 0.00 0.00 44.68 3.85
133 134 5.153513 CCACAAGGTTGAAATGATACAACG 58.846 41.667 0.00 0.00 44.68 4.10
134 135 4.923281 GCCACAAGGTTGAAATGATACAAC 59.077 41.667 0.00 0.00 43.53 3.32
135 136 4.586421 TGCCACAAGGTTGAAATGATACAA 59.414 37.500 0.00 0.00 37.19 2.41
136 137 4.148079 TGCCACAAGGTTGAAATGATACA 58.852 39.130 0.00 0.00 37.19 2.29
137 138 4.782019 TGCCACAAGGTTGAAATGATAC 57.218 40.909 0.00 0.00 37.19 2.24
138 139 5.015515 TGATGCCACAAGGTTGAAATGATA 58.984 37.500 0.00 0.00 37.19 2.15
139 140 3.833650 TGATGCCACAAGGTTGAAATGAT 59.166 39.130 0.00 0.00 37.19 2.45
140 141 3.005684 GTGATGCCACAAGGTTGAAATGA 59.994 43.478 0.00 0.00 42.72 2.57
141 142 3.319755 GTGATGCCACAAGGTTGAAATG 58.680 45.455 0.00 0.00 42.72 2.32
142 143 2.299867 GGTGATGCCACAAGGTTGAAAT 59.700 45.455 0.00 0.00 44.93 2.17
143 144 1.686052 GGTGATGCCACAAGGTTGAAA 59.314 47.619 0.00 0.00 44.93 2.69
144 145 1.133513 AGGTGATGCCACAAGGTTGAA 60.134 47.619 0.00 0.00 44.93 2.69
145 146 0.478072 AGGTGATGCCACAAGGTTGA 59.522 50.000 0.00 0.00 44.93 3.18
146 147 2.198827 TAGGTGATGCCACAAGGTTG 57.801 50.000 0.00 0.00 44.93 3.77
147 148 2.108250 ACTTAGGTGATGCCACAAGGTT 59.892 45.455 0.00 0.00 44.93 3.50
148 149 1.705186 ACTTAGGTGATGCCACAAGGT 59.295 47.619 0.00 0.00 44.93 3.50
149 150 2.086869 CACTTAGGTGATGCCACAAGG 58.913 52.381 0.00 0.00 45.61 3.61
150 151 2.783135 ACACTTAGGTGATGCCACAAG 58.217 47.619 12.54 0.00 45.61 3.16
151 152 2.949177 ACACTTAGGTGATGCCACAA 57.051 45.000 12.54 0.00 45.61 3.33
152 153 2.949177 AACACTTAGGTGATGCCACA 57.051 45.000 12.54 0.00 45.61 4.17
153 154 3.439129 GGTAAACACTTAGGTGATGCCAC 59.561 47.826 12.54 2.38 45.61 5.01
154 155 3.681593 GGTAAACACTTAGGTGATGCCA 58.318 45.455 12.54 0.00 45.61 4.92
155 156 2.676342 CGGTAAACACTTAGGTGATGCC 59.324 50.000 12.54 11.36 45.61 4.40
156 157 2.095372 GCGGTAAACACTTAGGTGATGC 59.905 50.000 12.54 3.83 45.61 3.91
157 158 3.596214 AGCGGTAAACACTTAGGTGATG 58.404 45.455 12.54 0.00 45.61 3.07
158 159 3.975168 AGCGGTAAACACTTAGGTGAT 57.025 42.857 12.54 0.00 45.61 3.06
159 160 3.756933 AAGCGGTAAACACTTAGGTGA 57.243 42.857 12.54 0.00 45.61 4.02
161 162 5.857268 TCTAAAAGCGGTAAACACTTAGGT 58.143 37.500 0.00 0.00 0.00 3.08
162 163 6.347969 GGTTCTAAAAGCGGTAAACACTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
163 164 6.426025 AGGTTCTAAAAGCGGTAAACACTTAG 59.574 38.462 0.00 0.00 37.95 2.18
164 165 6.290605 AGGTTCTAAAAGCGGTAAACACTTA 58.709 36.000 0.00 0.00 37.95 2.24
165 166 5.128205 AGGTTCTAAAAGCGGTAAACACTT 58.872 37.500 0.00 0.00 37.95 3.16
166 167 4.711399 AGGTTCTAAAAGCGGTAAACACT 58.289 39.130 0.00 0.00 37.95 3.55
167 168 4.083643 GGAGGTTCTAAAAGCGGTAAACAC 60.084 45.833 0.00 0.00 37.95 3.32
168 169 4.067192 GGAGGTTCTAAAAGCGGTAAACA 58.933 43.478 0.00 0.00 37.95 2.83
169 170 3.438087 GGGAGGTTCTAAAAGCGGTAAAC 59.562 47.826 0.00 0.00 37.95 2.01
170 171 3.559811 GGGGAGGTTCTAAAAGCGGTAAA 60.560 47.826 0.00 0.00 37.95 2.01
171 172 2.026915 GGGGAGGTTCTAAAAGCGGTAA 60.027 50.000 0.00 0.00 37.95 2.85
172 173 1.556451 GGGGAGGTTCTAAAAGCGGTA 59.444 52.381 0.00 0.00 37.95 4.02
173 174 0.327259 GGGGAGGTTCTAAAAGCGGT 59.673 55.000 0.00 0.00 37.95 5.68
174 175 0.326927 TGGGGAGGTTCTAAAAGCGG 59.673 55.000 0.00 0.00 37.95 5.52
175 176 2.194201 TTGGGGAGGTTCTAAAAGCG 57.806 50.000 0.00 0.00 37.95 4.68
176 177 6.599356 TTTAATTGGGGAGGTTCTAAAAGC 57.401 37.500 0.00 0.00 0.00 3.51
177 178 6.210584 TGCTTTAATTGGGGAGGTTCTAAAAG 59.789 38.462 0.00 0.00 0.00 2.27
178 179 6.078664 TGCTTTAATTGGGGAGGTTCTAAAA 58.921 36.000 0.00 0.00 0.00 1.52
179 180 5.646215 TGCTTTAATTGGGGAGGTTCTAAA 58.354 37.500 0.00 0.00 0.00 1.85
180 181 5.263872 TGCTTTAATTGGGGAGGTTCTAA 57.736 39.130 0.00 0.00 0.00 2.10
181 182 4.938575 TGCTTTAATTGGGGAGGTTCTA 57.061 40.909 0.00 0.00 0.00 2.10
182 183 3.825908 TGCTTTAATTGGGGAGGTTCT 57.174 42.857 0.00 0.00 0.00 3.01
183 184 4.023291 TGATGCTTTAATTGGGGAGGTTC 58.977 43.478 0.00 0.00 0.00 3.62
184 185 4.059773 TGATGCTTTAATTGGGGAGGTT 57.940 40.909 0.00 0.00 0.00 3.50
185 186 3.756082 TGATGCTTTAATTGGGGAGGT 57.244 42.857 0.00 0.00 0.00 3.85
186 187 3.254166 CGATGATGCTTTAATTGGGGAGG 59.746 47.826 0.00 0.00 0.00 4.30
187 188 3.885297 ACGATGATGCTTTAATTGGGGAG 59.115 43.478 0.00 0.00 0.00 4.30
188 189 3.631686 CACGATGATGCTTTAATTGGGGA 59.368 43.478 0.00 0.00 0.00 4.81
189 190 3.796504 GCACGATGATGCTTTAATTGGGG 60.797 47.826 0.00 0.00 42.62 4.96
190 191 3.181488 TGCACGATGATGCTTTAATTGGG 60.181 43.478 0.00 0.00 46.28 4.12
191 192 4.031418 TGCACGATGATGCTTTAATTGG 57.969 40.909 0.00 0.00 46.28 3.16
192 193 5.516996 AGATGCACGATGATGCTTTAATTG 58.483 37.500 0.00 0.00 46.28 2.32
193 194 5.762825 AGATGCACGATGATGCTTTAATT 57.237 34.783 0.00 0.00 46.28 1.40
194 195 5.180117 GGTAGATGCACGATGATGCTTTAAT 59.820 40.000 0.00 0.00 46.28 1.40
195 196 4.511454 GGTAGATGCACGATGATGCTTTAA 59.489 41.667 0.00 0.00 46.28 1.52
196 197 4.058124 GGTAGATGCACGATGATGCTTTA 58.942 43.478 0.00 0.00 46.28 1.85
197 198 2.874701 GGTAGATGCACGATGATGCTTT 59.125 45.455 0.00 0.00 46.28 3.51
198 199 2.487934 GGTAGATGCACGATGATGCTT 58.512 47.619 0.00 0.00 46.28 3.91
199 200 1.603931 CGGTAGATGCACGATGATGCT 60.604 52.381 0.00 0.00 46.28 3.79
200 201 0.786581 CGGTAGATGCACGATGATGC 59.213 55.000 0.00 0.00 46.32 3.91
201 202 2.422276 TCGGTAGATGCACGATGATG 57.578 50.000 0.00 0.00 0.00 3.07
202 203 3.123804 GTTTCGGTAGATGCACGATGAT 58.876 45.455 0.00 0.00 36.43 2.45
203 204 2.536365 GTTTCGGTAGATGCACGATGA 58.464 47.619 0.00 0.00 36.43 2.92
204 205 1.593006 GGTTTCGGTAGATGCACGATG 59.407 52.381 0.00 0.00 36.43 3.84
205 206 1.480954 AGGTTTCGGTAGATGCACGAT 59.519 47.619 0.00 0.00 36.43 3.73
206 207 0.892755 AGGTTTCGGTAGATGCACGA 59.107 50.000 0.00 0.00 34.47 4.35
207 208 1.722011 AAGGTTTCGGTAGATGCACG 58.278 50.000 0.00 0.00 0.00 5.34
208 209 4.499037 AAAAAGGTTTCGGTAGATGCAC 57.501 40.909 0.00 0.00 0.00 4.57
226 227 9.743057 CCTGATGACTTACATGTGTTTTAAAAA 57.257 29.630 9.11 0.00 39.56 1.94
227 228 7.865385 GCCTGATGACTTACATGTGTTTTAAAA 59.135 33.333 9.11 0.00 39.56 1.52
228 229 7.367285 GCCTGATGACTTACATGTGTTTTAAA 58.633 34.615 9.11 0.00 39.56 1.52
229 230 6.072175 GGCCTGATGACTTACATGTGTTTTAA 60.072 38.462 9.11 0.00 39.56 1.52
230 231 5.414454 GGCCTGATGACTTACATGTGTTTTA 59.586 40.000 9.11 0.00 39.56 1.52
231 232 4.218417 GGCCTGATGACTTACATGTGTTTT 59.782 41.667 9.11 0.00 39.56 2.43
232 233 3.758554 GGCCTGATGACTTACATGTGTTT 59.241 43.478 9.11 0.00 39.56 2.83
233 234 3.347216 GGCCTGATGACTTACATGTGTT 58.653 45.455 9.11 0.00 39.56 3.32
234 235 2.356125 GGGCCTGATGACTTACATGTGT 60.356 50.000 9.11 0.00 39.56 3.72
235 236 2.092753 AGGGCCTGATGACTTACATGTG 60.093 50.000 4.50 0.00 39.56 3.21
236 237 2.092753 CAGGGCCTGATGACTTACATGT 60.093 50.000 29.96 2.69 39.56 3.21
237 238 2.171237 TCAGGGCCTGATGACTTACATG 59.829 50.000 32.01 2.92 39.56 3.21
238 239 2.481441 TCAGGGCCTGATGACTTACAT 58.519 47.619 32.01 0.00 42.47 2.29
239 240 1.951209 TCAGGGCCTGATGACTTACA 58.049 50.000 32.01 6.93 35.39 2.41
248 249 0.405198 TTCAAAGCATCAGGGCCTGA 59.595 50.000 36.61 36.61 44.99 3.86
249 250 1.259609 TTTCAAAGCATCAGGGCCTG 58.740 50.000 28.01 28.01 0.00 4.85
250 251 2.105766 GATTTCAAAGCATCAGGGCCT 58.894 47.619 0.00 0.00 0.00 5.19
251 252 1.826720 TGATTTCAAAGCATCAGGGCC 59.173 47.619 0.00 0.00 0.00 5.80
252 253 2.417787 GGTGATTTCAAAGCATCAGGGC 60.418 50.000 0.00 0.00 29.85 5.19
253 254 2.827322 TGGTGATTTCAAAGCATCAGGG 59.173 45.455 0.00 0.00 32.10 4.45
254 255 4.430007 CATGGTGATTTCAAAGCATCAGG 58.570 43.478 7.52 2.92 41.76 3.86
255 256 3.863424 GCATGGTGATTTCAAAGCATCAG 59.137 43.478 7.52 1.20 41.76 2.90
256 257 3.258622 TGCATGGTGATTTCAAAGCATCA 59.741 39.130 3.31 3.31 42.77 3.07
257 258 3.852286 TGCATGGTGATTTCAAAGCATC 58.148 40.909 0.00 0.00 32.40 3.91
258 259 3.965379 TGCATGGTGATTTCAAAGCAT 57.035 38.095 0.00 0.00 34.96 3.79
259 260 3.747854 TTGCATGGTGATTTCAAAGCA 57.252 38.095 0.00 0.00 0.00 3.91
260 261 6.724694 TTATTTGCATGGTGATTTCAAAGC 57.275 33.333 0.00 0.00 31.33 3.51
261 262 7.361116 GGGTTTATTTGCATGGTGATTTCAAAG 60.361 37.037 0.00 0.00 31.33 2.77
262 263 6.429385 GGGTTTATTTGCATGGTGATTTCAAA 59.571 34.615 0.00 0.00 0.00 2.69
263 264 5.936956 GGGTTTATTTGCATGGTGATTTCAA 59.063 36.000 0.00 0.00 0.00 2.69
264 265 5.248020 AGGGTTTATTTGCATGGTGATTTCA 59.752 36.000 0.00 0.00 0.00 2.69
265 266 5.733676 AGGGTTTATTTGCATGGTGATTTC 58.266 37.500 0.00 0.00 0.00 2.17
266 267 5.760484 AGGGTTTATTTGCATGGTGATTT 57.240 34.783 0.00 0.00 0.00 2.17
267 268 5.363580 CCTAGGGTTTATTTGCATGGTGATT 59.636 40.000 0.00 0.00 0.00 2.57
268 269 4.895297 CCTAGGGTTTATTTGCATGGTGAT 59.105 41.667 0.00 0.00 0.00 3.06
269 270 4.264172 ACCTAGGGTTTATTTGCATGGTGA 60.264 41.667 14.81 0.00 27.29 4.02
270 271 4.023291 ACCTAGGGTTTATTTGCATGGTG 58.977 43.478 14.81 0.00 27.29 4.17
271 272 4.017499 AGACCTAGGGTTTATTTGCATGGT 60.017 41.667 14.81 0.00 35.25 3.55
272 273 4.339247 CAGACCTAGGGTTTATTTGCATGG 59.661 45.833 14.81 0.00 35.25 3.66
273 274 5.066505 GTCAGACCTAGGGTTTATTTGCATG 59.933 44.000 14.81 0.00 35.25 4.06
274 275 5.193679 GTCAGACCTAGGGTTTATTTGCAT 58.806 41.667 14.81 0.00 35.25 3.96
275 276 4.566907 GGTCAGACCTAGGGTTTATTTGCA 60.567 45.833 14.81 0.00 35.25 4.08
276 277 3.945921 GGTCAGACCTAGGGTTTATTTGC 59.054 47.826 14.81 0.00 35.25 3.68
277 278 4.227527 AGGGTCAGACCTAGGGTTTATTTG 59.772 45.833 19.57 0.00 39.65 2.32
278 279 4.445564 AGGGTCAGACCTAGGGTTTATTT 58.554 43.478 19.57 0.00 39.65 1.40
279 280 4.090027 AGGGTCAGACCTAGGGTTTATT 57.910 45.455 19.57 0.00 39.65 1.40
280 281 3.797671 AGGGTCAGACCTAGGGTTTAT 57.202 47.619 19.57 0.00 39.65 1.40
281 282 4.697802 TTAGGGTCAGACCTAGGGTTTA 57.302 45.455 19.57 0.00 43.62 2.01
282 283 3.572661 TTAGGGTCAGACCTAGGGTTT 57.427 47.619 19.57 0.00 43.62 3.27
283 284 3.780850 CAATTAGGGTCAGACCTAGGGTT 59.219 47.826 19.57 5.87 43.62 4.11
284 285 3.385115 CAATTAGGGTCAGACCTAGGGT 58.615 50.000 19.57 0.00 43.62 4.34
285 286 2.706190 CCAATTAGGGTCAGACCTAGGG 59.294 54.545 19.57 8.82 43.62 3.53
286 287 3.385115 ACCAATTAGGGTCAGACCTAGG 58.615 50.000 19.57 7.41 43.62 3.02
287 288 6.749036 ATAACCAATTAGGGTCAGACCTAG 57.251 41.667 19.57 3.50 43.62 3.02
288 289 8.239478 AGATATAACCAATTAGGGTCAGACCTA 58.761 37.037 19.57 7.07 41.32 3.08
289 290 7.016661 CAGATATAACCAATTAGGGTCAGACCT 59.983 40.741 19.57 8.04 41.32 3.85
290 291 7.016268 TCAGATATAACCAATTAGGGTCAGACC 59.984 40.741 11.70 11.70 41.32 3.85
291 292 7.873505 GTCAGATATAACCAATTAGGGTCAGAC 59.126 40.741 0.00 0.00 41.32 3.51
292 293 7.567250 TGTCAGATATAACCAATTAGGGTCAGA 59.433 37.037 0.00 0.00 41.32 3.27
293 294 7.735917 TGTCAGATATAACCAATTAGGGTCAG 58.264 38.462 0.00 0.00 41.32 3.51
294 295 7.684317 TGTCAGATATAACCAATTAGGGTCA 57.316 36.000 0.00 0.00 41.32 4.02
295 296 9.003658 CATTGTCAGATATAACCAATTAGGGTC 57.996 37.037 0.00 0.00 41.32 4.46
296 297 7.944554 CCATTGTCAGATATAACCAATTAGGGT 59.055 37.037 0.00 0.00 45.04 4.34
297 298 7.094205 GCCATTGTCAGATATAACCAATTAGGG 60.094 40.741 0.00 0.00 43.89 3.53
298 299 7.361201 CGCCATTGTCAGATATAACCAATTAGG 60.361 40.741 0.00 0.00 45.67 2.69
299 300 7.361201 CCGCCATTGTCAGATATAACCAATTAG 60.361 40.741 0.00 0.00 0.00 1.73
300 301 6.429692 CCGCCATTGTCAGATATAACCAATTA 59.570 38.462 0.00 0.00 0.00 1.40
301 302 5.241506 CCGCCATTGTCAGATATAACCAATT 59.758 40.000 0.00 0.00 0.00 2.32
302 303 4.761739 CCGCCATTGTCAGATATAACCAAT 59.238 41.667 0.00 0.00 0.00 3.16
303 304 4.133820 CCGCCATTGTCAGATATAACCAA 58.866 43.478 0.00 0.00 0.00 3.67
304 305 3.135712 ACCGCCATTGTCAGATATAACCA 59.864 43.478 0.00 0.00 0.00 3.67
305 306 3.498397 CACCGCCATTGTCAGATATAACC 59.502 47.826 0.00 0.00 0.00 2.85
306 307 4.127171 ACACCGCCATTGTCAGATATAAC 58.873 43.478 0.00 0.00 0.00 1.89
307 308 4.415881 ACACCGCCATTGTCAGATATAA 57.584 40.909 0.00 0.00 0.00 0.98
308 309 4.415881 AACACCGCCATTGTCAGATATA 57.584 40.909 0.00 0.00 0.00 0.86
309 310 3.281727 AACACCGCCATTGTCAGATAT 57.718 42.857 0.00 0.00 0.00 1.63
310 311 2.779755 AACACCGCCATTGTCAGATA 57.220 45.000 0.00 0.00 0.00 1.98
311 312 1.909700 AAACACCGCCATTGTCAGAT 58.090 45.000 0.00 0.00 0.00 2.90
312 313 1.686355 AAAACACCGCCATTGTCAGA 58.314 45.000 0.00 0.00 0.00 3.27
313 314 2.126467 CAAAAACACCGCCATTGTCAG 58.874 47.619 0.00 0.00 0.00 3.51
314 315 1.478510 ACAAAAACACCGCCATTGTCA 59.521 42.857 0.00 0.00 28.61 3.58
315 316 1.857837 CACAAAAACACCGCCATTGTC 59.142 47.619 0.00 0.00 32.25 3.18
316 317 1.205893 ACACAAAAACACCGCCATTGT 59.794 42.857 0.00 0.00 34.74 2.71
317 318 1.933247 ACACAAAAACACCGCCATTG 58.067 45.000 0.00 0.00 0.00 2.82
318 319 2.275318 CAACACAAAAACACCGCCATT 58.725 42.857 0.00 0.00 0.00 3.16
319 320 1.205893 ACAACACAAAAACACCGCCAT 59.794 42.857 0.00 0.00 0.00 4.40
320 321 0.603569 ACAACACAAAAACACCGCCA 59.396 45.000 0.00 0.00 0.00 5.69
321 322 1.391826 CAACAACACAAAAACACCGCC 59.608 47.619 0.00 0.00 0.00 6.13
322 323 1.201866 GCAACAACACAAAAACACCGC 60.202 47.619 0.00 0.00 0.00 5.68
323 324 1.391826 GGCAACAACACAAAAACACCG 59.608 47.619 0.00 0.00 0.00 4.94
324 325 2.694213 AGGCAACAACACAAAAACACC 58.306 42.857 0.00 0.00 41.41 4.16
325 326 6.091441 TCAATAAGGCAACAACACAAAAACAC 59.909 34.615 0.00 0.00 41.41 3.32
379 389 8.364894 ACCAAAGGTCAAATCCTTAATTTACAC 58.635 33.333 0.00 0.00 45.79 2.90
396 406 2.298163 TCGAGTCTAACCACCAAAGGTC 59.702 50.000 0.00 0.00 42.25 3.85
406 416 3.169733 GTCGTTGTCATCGAGTCTAACC 58.830 50.000 6.25 0.00 37.99 2.85
413 423 1.136057 TCGAGTGTCGTTGTCATCGAG 60.136 52.381 6.25 0.00 41.35 4.04
421 431 0.600255 AAAGCCCTCGAGTGTCGTTG 60.600 55.000 12.31 0.00 41.35 4.10
435 445 3.222603 TGTCTTCAGAAAGGGAAAAGCC 58.777 45.455 0.00 0.00 33.03 4.35
437 447 4.378874 GCGATGTCTTCAGAAAGGGAAAAG 60.379 45.833 0.00 0.00 33.03 2.27
439 449 3.074412 GCGATGTCTTCAGAAAGGGAAA 58.926 45.455 0.00 0.00 33.03 3.13
454 464 3.963428 AAGTTTCTCCAGTAGCGATGT 57.037 42.857 0.00 0.00 0.00 3.06
470 480 7.147976 GGCATTACAAAGACAATGAGAAAGTT 58.852 34.615 0.00 0.00 34.69 2.66
517 527 4.142859 TGGTCAACAAACTACAACAACGAC 60.143 41.667 0.00 0.00 0.00 4.34
570 580 5.661759 ACTCAAACTATACCTAGGTGGAAGG 59.338 44.000 25.33 11.79 39.71 3.46
585 595 8.677148 ATAAAAGAGCAAAGTCACTCAAACTA 57.323 30.769 0.00 0.00 35.28 2.24
611 628 6.567687 TGATTAGAATTCCAGTGCGAAAAA 57.432 33.333 0.65 0.00 0.00 1.94
612 629 6.150976 ACATGATTAGAATTCCAGTGCGAAAA 59.849 34.615 0.00 0.00 0.00 2.29
613 630 5.647658 ACATGATTAGAATTCCAGTGCGAAA 59.352 36.000 0.00 0.00 0.00 3.46
614 631 5.185454 ACATGATTAGAATTCCAGTGCGAA 58.815 37.500 0.00 0.00 0.00 4.70
616 633 5.178252 CCTACATGATTAGAATTCCAGTGCG 59.822 44.000 0.00 0.00 0.00 5.34
617 634 5.471456 CCCTACATGATTAGAATTCCAGTGC 59.529 44.000 0.00 0.00 0.00 4.40
618 635 5.471456 GCCCTACATGATTAGAATTCCAGTG 59.529 44.000 0.00 0.00 0.00 3.66
619 636 5.456763 GGCCCTACATGATTAGAATTCCAGT 60.457 44.000 0.00 0.00 0.00 4.00
620 637 5.006386 GGCCCTACATGATTAGAATTCCAG 58.994 45.833 0.00 0.00 0.00 3.86
621 638 4.665009 AGGCCCTACATGATTAGAATTCCA 59.335 41.667 0.00 0.00 0.00 3.53
622 639 5.006386 CAGGCCCTACATGATTAGAATTCC 58.994 45.833 0.00 0.00 0.00 3.01
623 640 5.869579 TCAGGCCCTACATGATTAGAATTC 58.130 41.667 0.00 0.00 0.00 2.17
624 641 5.912149 TCAGGCCCTACATGATTAGAATT 57.088 39.130 0.00 0.00 0.00 2.17
625 642 5.311649 ACATCAGGCCCTACATGATTAGAAT 59.688 40.000 0.00 0.00 31.38 2.40
637 654 5.329399 ACAATAAAAACACATCAGGCCCTA 58.671 37.500 0.00 0.00 0.00 3.53
642 659 7.692908 ACGAAAACAATAAAAACACATCAGG 57.307 32.000 0.00 0.00 0.00 3.86
653 670 7.863666 ACACGGAAGAATACGAAAACAATAAA 58.136 30.769 0.00 0.00 0.00 1.40
659 676 6.214205 TGTTACACGGAAGAATACGAAAAC 57.786 37.500 0.00 0.00 0.00 2.43
664 681 6.823531 TCAAAATGTTACACGGAAGAATACG 58.176 36.000 0.00 0.00 0.00 3.06
673 690 8.789881 TTTTATTGACTCAAAATGTTACACGG 57.210 30.769 0.00 0.00 0.00 4.94
678 695 9.834628 GACGGATTTTATTGACTCAAAATGTTA 57.165 29.630 0.00 0.00 35.14 2.41
746 771 4.055360 CGCGAAATGGTTATCATGGTAGA 58.945 43.478 0.00 0.00 35.99 2.59
747 772 3.807622 ACGCGAAATGGTTATCATGGTAG 59.192 43.478 15.93 0.00 35.99 3.18
748 773 3.799366 ACGCGAAATGGTTATCATGGTA 58.201 40.909 15.93 0.00 35.99 3.25
759 784 0.870307 CGGTAGGAGACGCGAAATGG 60.870 60.000 15.93 0.00 0.00 3.16
766 791 2.288961 TGAATTTCGGTAGGAGACGC 57.711 50.000 0.00 0.00 0.00 5.19
815 840 3.056465 TGTTTGCGTGGGAGAAAACTTTT 60.056 39.130 2.75 0.00 34.39 2.27
845 870 3.509575 GCCAAATTGACACTTCATACCCA 59.490 43.478 0.00 0.00 0.00 4.51
846 871 3.119137 GGCCAAATTGACACTTCATACCC 60.119 47.826 0.00 0.00 0.00 3.69
861 886 2.903784 GGAAAACTAGGGTTGGCCAAAT 59.096 45.455 22.47 12.05 35.63 2.32
877 902 5.139727 AGTGAATTGTGATGGACAGGAAAA 58.860 37.500 0.00 0.00 35.44 2.29
918 950 0.755327 CGGATGGGGAAATGGGGAAC 60.755 60.000 0.00 0.00 0.00 3.62
958 990 0.682209 AGATTTGGCCGCAATGCTCT 60.682 50.000 2.94 0.00 0.00 4.09
1084 1128 4.117661 GGCGCTCTCGTCGGAGTT 62.118 66.667 7.64 0.00 41.26 3.01
1380 1451 3.073735 CAGCTCTCCGCCTGGTCT 61.074 66.667 0.00 0.00 40.39 3.85
1538 1627 0.593128 CTCTCGGGGCAAAACACAAG 59.407 55.000 0.00 0.00 0.00 3.16
1851 1955 3.120199 CCAATATCTCCAATTTAGGCGCG 60.120 47.826 0.00 0.00 0.00 6.86
1891 1995 1.398692 GAGACTCGGAGCTTGGAGAT 58.601 55.000 18.52 8.80 34.40 2.75
1904 2008 0.614979 TGGTGCTACCTGGGAGACTC 60.615 60.000 11.01 2.14 39.58 3.36
1980 2116 9.786105 GAAAACAAACAATGAACATGGAAAAAT 57.214 25.926 0.00 0.00 0.00 1.82
2076 2220 6.302269 AGAACTCCATCCAATTCATATCCAC 58.698 40.000 0.00 0.00 0.00 4.02
2214 2373 3.116300 CTGTCAAGCGTCGCTGTATTAT 58.884 45.455 22.50 0.00 39.62 1.28
2223 2382 6.129062 GGATATTAAGAATCTGTCAAGCGTCG 60.129 42.308 0.00 0.00 0.00 5.12
2346 2508 6.051717 CCCACAAATGTTTCAAACACCATTA 58.948 36.000 4.73 0.00 45.50 1.90
2348 2510 4.450053 CCCACAAATGTTTCAAACACCAT 58.550 39.130 4.73 0.00 45.50 3.55
2365 2527 1.005805 AGCTGTTTATCATGGCCCACA 59.994 47.619 0.00 0.00 0.00 4.17
2389 2551 6.867662 TTCAAAACAAAGAACTTGGCAAAA 57.132 29.167 0.00 0.00 39.56 2.44
2626 3971 0.533755 GATCTTCAGGCATCCACCCG 60.534 60.000 0.00 0.00 0.00 5.28
2631 3977 2.602322 GCGCGATCTTCAGGCATCC 61.602 63.158 12.10 0.00 0.00 3.51
2645 3991 0.734253 AAGACACTAAGAGCAGCGCG 60.734 55.000 0.00 0.00 0.00 6.86
2652 3998 3.290308 ACGAGCACAAGACACTAAGAG 57.710 47.619 0.00 0.00 0.00 2.85
2738 4087 7.548427 GGTACTTGAATTACAGAGGAACCTTAC 59.452 40.741 0.00 0.00 0.00 2.34
3022 4406 2.862536 CAGATGCTGTATGAACACTCGG 59.137 50.000 0.00 0.00 0.00 4.63
3129 4513 5.221722 TGAGGATCAGTAGCAAAACTTCAGT 60.222 40.000 0.00 0.00 42.56 3.41
3168 4561 0.622136 TGCAGCATTCAGTCCTGGAT 59.378 50.000 0.00 0.00 0.00 3.41
3324 4718 5.438761 AAACTCGAACTTTGGATGAAAGG 57.561 39.130 0.00 0.00 44.85 3.11
3402 4813 2.091885 GTCCCTAAGCCCAATCCAATGA 60.092 50.000 0.00 0.00 0.00 2.57
3419 4838 2.025887 ACCAACATCATCTTCAGGTCCC 60.026 50.000 0.00 0.00 0.00 4.46
3472 4891 1.596752 TTGATGCGCGTCAAGTGGT 60.597 52.632 34.99 0.00 33.41 4.16
3577 5004 5.886960 AAAGCCTAGTCTTGCAACAATAG 57.113 39.130 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.