Multiple sequence alignment - TraesCS7B01G349600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G349600 chr7B 100.000 3391 0 0 1 3391 606396877 606400267 0.000000e+00 6263.0
1 TraesCS7B01G349600 chr7B 84.188 1385 127 46 1925 3276 606335589 606334264 0.000000e+00 1260.0
2 TraesCS7B01G349600 chr7B 91.379 406 22 12 325 723 714406404 714406005 8.280000e-151 544.0
3 TraesCS7B01G349600 chr7B 93.333 195 10 1 709 903 599109834 599109643 5.540000e-73 285.0
4 TraesCS7B01G349600 chr7B 76.382 199 31 13 2203 2395 606423868 606424056 3.600000e-15 93.5
5 TraesCS7B01G349600 chr7A 78.417 2224 319 82 1121 3275 644282936 644280805 0.000000e+00 1299.0
6 TraesCS7B01G349600 chr7A 84.831 1180 156 14 1465 2640 644279216 644278056 0.000000e+00 1166.0
7 TraesCS7B01G349600 chr7A 96.056 355 12 2 359 711 707812343 707812697 8.160000e-161 577.0
8 TraesCS7B01G349600 chr7A 95.810 358 13 2 359 714 710491402 710491045 8.160000e-161 577.0
9 TraesCS7B01G349600 chr7A 86.000 500 47 9 1002 1486 644279722 644279231 6.490000e-142 514.0
10 TraesCS7B01G349600 chr7A 86.057 459 42 8 2952 3389 644277837 644277380 1.100000e-129 473.0
11 TraesCS7B01G349600 chr7A 73.522 812 145 39 1806 2584 643770502 643771276 9.400000e-61 244.0
12 TraesCS7B01G349600 chr7A 89.157 166 9 4 2824 2981 644278013 644277849 7.420000e-47 198.0
13 TraesCS7B01G349600 chr7A 82.927 123 18 3 3254 3373 617195547 617195425 1.290000e-19 108.0
14 TraesCS7B01G349600 chr7D 77.497 1702 249 58 1085 2746 558331236 558332843 0.000000e+00 898.0
15 TraesCS7B01G349600 chr7D 93.401 197 8 2 709 903 69714226 69714033 1.540000e-73 287.0
16 TraesCS7B01G349600 chr3A 90.515 485 38 4 314 790 164275422 164274938 4.770000e-178 634.0
17 TraesCS7B01G349600 chr4A 96.286 350 12 1 362 710 690223177 690223526 1.060000e-159 573.0
18 TraesCS7B01G349600 chr5A 96.254 347 12 1 365 710 45711861 45711515 4.910000e-158 568.0
19 TraesCS7B01G349600 chr5A 96.226 53 1 1 944 996 18946522 18946573 6.030000e-13 86.1
20 TraesCS7B01G349600 chr6A 93.931 379 15 6 331 705 169890724 169891098 1.770000e-157 566.0
21 TraesCS7B01G349600 chr6A 90.385 104 8 2 269 371 111114954 111115056 5.900000e-28 135.0
22 TraesCS7B01G349600 chr2B 95.739 352 13 2 362 712 89427122 89426772 1.770000e-157 566.0
23 TraesCS7B01G349600 chr2B 93.369 377 18 7 352 724 106151217 106151590 4.950000e-153 551.0
24 TraesCS7B01G349600 chr2B 83.575 621 65 25 284 892 437385231 437384636 6.400000e-152 547.0
25 TraesCS7B01G349600 chr2B 93.333 195 10 1 709 903 206682302 206682111 5.540000e-73 285.0
26 TraesCS7B01G349600 chr2B 90.385 52 5 0 948 999 29542529 29542478 6.070000e-08 69.4
27 TraesCS7B01G349600 chr2B 85.714 56 8 0 944 999 793958080 793958025 3.650000e-05 60.2
28 TraesCS7B01G349600 chr2B 94.444 36 2 0 948 983 337083285 337083320 4.730000e-04 56.5
29 TraesCS7B01G349600 chr5B 96.335 191 7 0 709 899 324072078 324071888 7.060000e-82 315.0
30 TraesCS7B01G349600 chr5B 87.013 154 18 2 16 169 661250650 661250499 4.500000e-39 172.0
31 TraesCS7B01G349600 chr5B 92.784 97 6 1 276 371 637621268 637621364 4.560000e-29 139.0
32 TraesCS7B01G349600 chr3B 94.792 192 7 1 709 900 72793370 72793558 2.560000e-76 296.0
33 TraesCS7B01G349600 chr3B 94.231 52 3 0 948 999 144494259 144494310 2.800000e-11 80.5
34 TraesCS7B01G349600 chr1B 93.846 195 9 1 709 903 391330173 391329982 1.190000e-74 291.0
35 TraesCS7B01G349600 chr1B 94.241 191 8 1 709 899 120744068 120744255 4.280000e-74 289.0
36 TraesCS7B01G349600 chr4D 93.750 192 9 1 709 900 191833416 191833604 5.540000e-73 285.0
37 TraesCS7B01G349600 chr4D 92.784 97 6 1 276 371 77911101 77911197 4.560000e-29 139.0
38 TraesCS7B01G349600 chr4D 89.423 104 11 0 276 379 59641818 59641715 7.630000e-27 132.0
39 TraesCS7B01G349600 chr6B 93.491 169 9 1 1 169 648654135 648654301 2.020000e-62 250.0
40 TraesCS7B01G349600 chr6B 93.548 93 5 1 273 365 208862082 208862173 1.640000e-28 137.0
41 TraesCS7B01G349600 chr6B 92.500 40 3 0 944 983 42677060 42677021 1.310000e-04 58.4
42 TraesCS7B01G349600 chr4B 94.565 92 5 0 274 365 32683888 32683797 3.530000e-30 143.0
43 TraesCS7B01G349600 chr4B 93.548 93 6 0 273 365 352211080 352211172 4.560000e-29 139.0
44 TraesCS7B01G349600 chr3D 91.262 103 8 1 270 371 168517983 168517881 4.560000e-29 139.0
45 TraesCS7B01G349600 chr3D 88.462 52 6 0 948 999 182219620 182219671 2.820000e-06 63.9
46 TraesCS7B01G349600 chr1D 90.385 104 8 2 269 371 328441653 328441551 5.900000e-28 135.0
47 TraesCS7B01G349600 chr5D 94.000 50 2 1 944 993 27687572 27687620 1.310000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G349600 chr7B 606396877 606400267 3390 False 6263 6263 100.0000 1 3391 1 chr7B.!!$F1 3390
1 TraesCS7B01G349600 chr7B 606334264 606335589 1325 True 1260 1260 84.1880 1925 3276 1 chr7B.!!$R2 1351
2 TraesCS7B01G349600 chr7A 644277380 644282936 5556 True 730 1299 84.8924 1002 3389 5 chr7A.!!$R3 2387
3 TraesCS7B01G349600 chr7A 643770502 643771276 774 False 244 244 73.5220 1806 2584 1 chr7A.!!$F1 778
4 TraesCS7B01G349600 chr7D 558331236 558332843 1607 False 898 898 77.4970 1085 2746 1 chr7D.!!$F1 1661
5 TraesCS7B01G349600 chr2B 437384636 437385231 595 True 547 547 83.5750 284 892 1 chr2B.!!$R4 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 932 0.178995 GTTGTACCCCGGGTCCAAAA 60.179 55.0 21.85 4.13 33.52 2.44 F
1462 3716 0.029035 CTGCAATCAGCCATTCTCGC 59.971 55.0 0.00 0.00 44.83 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 4306 0.538746 AAACTGCCGAAACCGGGATT 60.539 50.0 6.32 0.0 46.28 3.01 R
3140 5569 0.176680 TGGAGAGAGGCGAGCATTTC 59.823 55.0 0.00 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.512926 CCCATAGCGTAACCATGAGC 58.487 55.000 0.00 0.00 0.00 4.26
21 22 2.485479 CCCATAGCGTAACCATGAGCTT 60.485 50.000 0.00 0.00 40.73 3.74
22 23 3.244078 CCCATAGCGTAACCATGAGCTTA 60.244 47.826 0.00 0.00 40.73 3.09
23 24 4.377021 CCATAGCGTAACCATGAGCTTAA 58.623 43.478 0.00 0.00 40.73 1.85
24 25 4.997395 CCATAGCGTAACCATGAGCTTAAT 59.003 41.667 0.00 0.00 40.73 1.40
26 27 4.137116 AGCGTAACCATGAGCTTAATGA 57.863 40.909 10.97 0.00 36.41 2.57
28 29 4.332819 AGCGTAACCATGAGCTTAATGAAC 59.667 41.667 10.97 6.28 36.41 3.18
29 30 4.332819 GCGTAACCATGAGCTTAATGAACT 59.667 41.667 10.97 0.15 0.00 3.01
31 32 5.580691 CGTAACCATGAGCTTAATGAACTGA 59.419 40.000 10.97 0.00 0.00 3.41
32 33 6.258727 CGTAACCATGAGCTTAATGAACTGAT 59.741 38.462 10.97 0.00 0.00 2.90
33 34 6.690194 AACCATGAGCTTAATGAACTGATC 57.310 37.500 10.97 0.00 0.00 2.92
35 36 4.813161 CCATGAGCTTAATGAACTGATCGT 59.187 41.667 10.97 0.00 0.00 3.73
36 37 5.277202 CCATGAGCTTAATGAACTGATCGTG 60.277 44.000 10.97 0.00 33.33 4.35
37 38 4.820897 TGAGCTTAATGAACTGATCGTGT 58.179 39.130 0.00 0.00 0.00 4.49
38 39 4.627035 TGAGCTTAATGAACTGATCGTGTG 59.373 41.667 0.00 0.00 0.00 3.82
39 40 4.820897 AGCTTAATGAACTGATCGTGTGA 58.179 39.130 0.00 0.00 0.00 3.58
40 41 5.423015 AGCTTAATGAACTGATCGTGTGAT 58.577 37.500 0.00 0.00 37.60 3.06
41 42 6.573434 AGCTTAATGAACTGATCGTGTGATA 58.427 36.000 0.00 0.00 34.09 2.15
42 43 7.041721 AGCTTAATGAACTGATCGTGTGATAA 58.958 34.615 0.00 0.00 34.09 1.75
43 44 7.010552 AGCTTAATGAACTGATCGTGTGATAAC 59.989 37.037 0.00 0.00 34.09 1.89
44 45 7.201522 GCTTAATGAACTGATCGTGTGATAACA 60.202 37.037 0.00 0.00 34.09 2.41
45 46 6.653273 AATGAACTGATCGTGTGATAACAG 57.347 37.500 0.00 0.00 34.09 3.16
46 47 3.926527 TGAACTGATCGTGTGATAACAGC 59.073 43.478 0.00 0.00 34.09 4.40
47 48 3.876274 ACTGATCGTGTGATAACAGCT 57.124 42.857 0.00 0.00 34.09 4.24
48 49 3.775202 ACTGATCGTGTGATAACAGCTC 58.225 45.455 0.00 0.00 34.09 4.09
49 50 3.119291 CTGATCGTGTGATAACAGCTCC 58.881 50.000 0.00 0.00 34.09 4.70
50 51 2.495669 TGATCGTGTGATAACAGCTCCA 59.504 45.455 0.00 0.00 34.09 3.86
51 52 3.132824 TGATCGTGTGATAACAGCTCCAT 59.867 43.478 0.00 0.00 34.09 3.41
52 53 4.340950 TGATCGTGTGATAACAGCTCCATA 59.659 41.667 0.00 0.00 34.09 2.74
53 54 4.729227 TCGTGTGATAACAGCTCCATAA 57.271 40.909 0.00 0.00 0.00 1.90
54 55 4.682787 TCGTGTGATAACAGCTCCATAAG 58.317 43.478 0.00 0.00 0.00 1.73
55 56 4.159693 TCGTGTGATAACAGCTCCATAAGT 59.840 41.667 0.00 0.00 0.00 2.24
56 57 4.268644 CGTGTGATAACAGCTCCATAAGTG 59.731 45.833 0.00 0.00 0.00 3.16
57 58 5.178797 GTGTGATAACAGCTCCATAAGTGT 58.821 41.667 0.00 0.00 0.00 3.55
58 59 5.063944 GTGTGATAACAGCTCCATAAGTGTG 59.936 44.000 0.00 0.00 0.00 3.82
59 60 5.046663 TGTGATAACAGCTCCATAAGTGTGA 60.047 40.000 0.00 0.00 0.00 3.58
61 62 5.874810 TGATAACAGCTCCATAAGTGTGAAC 59.125 40.000 0.00 0.00 0.00 3.18
62 63 3.769739 ACAGCTCCATAAGTGTGAACA 57.230 42.857 0.00 0.00 0.00 3.18
63 64 4.085357 ACAGCTCCATAAGTGTGAACAA 57.915 40.909 0.00 0.00 0.00 2.83
64 65 3.815401 ACAGCTCCATAAGTGTGAACAAC 59.185 43.478 0.00 0.00 0.00 3.32
65 66 3.189287 CAGCTCCATAAGTGTGAACAACC 59.811 47.826 0.00 0.00 0.00 3.77
66 67 3.146066 GCTCCATAAGTGTGAACAACCA 58.854 45.455 0.00 0.00 0.00 3.67
67 68 3.058224 GCTCCATAAGTGTGAACAACCAC 60.058 47.826 0.00 0.00 37.55 4.16
68 69 4.389374 CTCCATAAGTGTGAACAACCACT 58.611 43.478 0.00 0.00 37.89 4.00
69 70 4.133820 TCCATAAGTGTGAACAACCACTG 58.866 43.478 0.00 0.00 37.89 3.66
70 71 3.253188 CCATAAGTGTGAACAACCACTGG 59.747 47.826 0.00 0.00 37.89 4.00
71 72 2.507407 AAGTGTGAACAACCACTGGT 57.493 45.000 0.00 0.00 37.89 4.00
73 74 2.365582 AGTGTGAACAACCACTGGTTC 58.634 47.619 10.77 0.96 43.05 3.62
74 75 1.063469 GTGTGAACAACCACTGGTTCG 59.937 52.381 10.77 9.19 43.05 3.95
77 78 1.433837 GAACAACCACTGGTTCGCGT 61.434 55.000 10.77 3.65 43.05 6.01
78 79 1.027792 AACAACCACTGGTTCGCGTT 61.028 50.000 10.77 9.51 43.05 4.84
79 80 1.027792 ACAACCACTGGTTCGCGTTT 61.028 50.000 10.77 0.00 43.05 3.60
80 81 0.591236 CAACCACTGGTTCGCGTTTG 60.591 55.000 10.77 0.00 43.05 2.93
82 83 0.534203 ACCACTGGTTCGCGTTTGAT 60.534 50.000 5.77 0.00 27.29 2.57
84 85 1.399727 CCACTGGTTCGCGTTTGATTC 60.400 52.381 5.77 0.00 0.00 2.52
85 86 1.531149 CACTGGTTCGCGTTTGATTCT 59.469 47.619 5.77 0.00 0.00 2.40
86 87 1.531149 ACTGGTTCGCGTTTGATTCTG 59.469 47.619 5.77 0.00 0.00 3.02
87 88 1.531149 CTGGTTCGCGTTTGATTCTGT 59.469 47.619 5.77 0.00 0.00 3.41
88 89 1.944024 TGGTTCGCGTTTGATTCTGTT 59.056 42.857 5.77 0.00 0.00 3.16
90 91 3.749088 TGGTTCGCGTTTGATTCTGTTAT 59.251 39.130 5.77 0.00 0.00 1.89
92 93 5.408909 TGGTTCGCGTTTGATTCTGTTATAA 59.591 36.000 5.77 0.00 0.00 0.98
93 94 5.731263 GGTTCGCGTTTGATTCTGTTATAAC 59.269 40.000 5.77 8.75 0.00 1.89
94 95 6.401796 GGTTCGCGTTTGATTCTGTTATAACT 60.402 38.462 16.33 0.00 0.00 2.24
95 96 6.089920 TCGCGTTTGATTCTGTTATAACTG 57.910 37.500 16.33 15.37 0.00 3.16
96 97 4.723862 CGCGTTTGATTCTGTTATAACTGC 59.276 41.667 16.33 4.78 0.00 4.40
97 98 5.445939 CGCGTTTGATTCTGTTATAACTGCT 60.446 40.000 16.33 7.04 0.00 4.24
98 99 6.237728 CGCGTTTGATTCTGTTATAACTGCTA 60.238 38.462 16.33 8.03 0.00 3.49
100 101 7.119997 CGTTTGATTCTGTTATAACTGCTAGC 58.880 38.462 16.33 8.10 0.00 3.42
102 103 7.776933 TTGATTCTGTTATAACTGCTAGCTG 57.223 36.000 19.01 19.01 0.00 4.24
103 104 5.755375 TGATTCTGTTATAACTGCTAGCTGC 59.245 40.000 20.35 4.83 43.25 5.25
104 105 5.344743 TTCTGTTATAACTGCTAGCTGCT 57.655 39.130 20.35 7.57 43.37 4.24
105 106 4.686972 TCTGTTATAACTGCTAGCTGCTG 58.313 43.478 20.35 4.99 44.70 4.41
106 107 4.402474 TCTGTTATAACTGCTAGCTGCTGA 59.598 41.667 20.35 9.94 42.27 4.26
107 108 4.686972 TGTTATAACTGCTAGCTGCTGAG 58.313 43.478 20.35 9.33 42.27 3.35
108 109 4.402474 TGTTATAACTGCTAGCTGCTGAGA 59.598 41.667 20.35 1.87 42.27 3.27
109 110 3.731652 ATAACTGCTAGCTGCTGAGAG 57.268 47.619 20.35 7.89 42.27 3.20
110 111 1.554836 AACTGCTAGCTGCTGAGAGA 58.445 50.000 20.35 0.00 42.27 3.10
111 112 1.105457 ACTGCTAGCTGCTGAGAGAG 58.895 55.000 20.35 6.46 42.27 3.20
112 113 1.340893 ACTGCTAGCTGCTGAGAGAGA 60.341 52.381 20.35 0.00 42.27 3.10
113 114 1.335810 CTGCTAGCTGCTGAGAGAGAG 59.664 57.143 17.23 0.23 42.27 3.20
114 115 0.670162 GCTAGCTGCTGAGAGAGAGG 59.330 60.000 13.43 0.00 38.95 3.69
115 116 2.023788 GCTAGCTGCTGAGAGAGAGGT 61.024 57.143 13.43 0.00 38.95 3.85
117 118 0.332632 AGCTGCTGAGAGAGAGGTCT 59.667 55.000 0.00 0.00 34.86 3.85
119 120 1.550072 GCTGCTGAGAGAGAGGTCTTT 59.450 52.381 0.00 0.00 30.97 2.52
120 121 2.757868 GCTGCTGAGAGAGAGGTCTTTA 59.242 50.000 0.00 0.00 30.97 1.85
121 122 3.384467 GCTGCTGAGAGAGAGGTCTTTAT 59.616 47.826 0.00 0.00 30.97 1.40
124 125 3.957497 GCTGAGAGAGAGGTCTTTATCCA 59.043 47.826 0.00 0.00 30.97 3.41
126 127 5.199982 TGAGAGAGAGGTCTTTATCCACT 57.800 43.478 0.00 0.00 30.97 4.00
127 128 6.328782 TGAGAGAGAGGTCTTTATCCACTA 57.671 41.667 0.00 0.00 30.97 2.74
128 129 6.361433 TGAGAGAGAGGTCTTTATCCACTAG 58.639 44.000 0.00 0.00 30.97 2.57
129 130 6.158871 TGAGAGAGAGGTCTTTATCCACTAGA 59.841 42.308 0.00 0.00 30.97 2.43
130 131 6.601332 AGAGAGAGGTCTTTATCCACTAGAG 58.399 44.000 0.00 0.00 30.97 2.43
131 132 5.137551 AGAGAGGTCTTTATCCACTAGAGC 58.862 45.833 0.00 0.00 36.83 4.09
132 133 4.219919 AGAGGTCTTTATCCACTAGAGCC 58.780 47.826 0.00 0.00 37.17 4.70
133 134 3.310193 AGGTCTTTATCCACTAGAGCCC 58.690 50.000 0.00 0.00 37.17 5.19
136 137 4.838986 GGTCTTTATCCACTAGAGCCCATA 59.161 45.833 0.00 0.00 31.89 2.74
137 138 5.485708 GGTCTTTATCCACTAGAGCCCATAT 59.514 44.000 0.00 0.00 31.89 1.78
139 140 7.363968 GGTCTTTATCCACTAGAGCCCATATAC 60.364 44.444 0.00 0.00 31.89 1.47
140 141 7.178628 GTCTTTATCCACTAGAGCCCATATACA 59.821 40.741 0.00 0.00 0.00 2.29
141 142 6.852420 TTATCCACTAGAGCCCATATACAC 57.148 41.667 0.00 0.00 0.00 2.90
142 143 3.507411 TCCACTAGAGCCCATATACACC 58.493 50.000 0.00 0.00 0.00 4.16
144 145 2.891580 CACTAGAGCCCATATACACCGT 59.108 50.000 0.00 0.00 0.00 4.83
145 146 2.891580 ACTAGAGCCCATATACACCGTG 59.108 50.000 0.00 0.00 0.00 4.94
146 147 2.082140 AGAGCCCATATACACCGTGA 57.918 50.000 5.28 0.00 0.00 4.35
148 149 1.411246 GAGCCCATATACACCGTGACA 59.589 52.381 5.28 0.00 0.00 3.58
149 150 2.037251 GAGCCCATATACACCGTGACAT 59.963 50.000 5.28 0.80 0.00 3.06
150 151 3.236047 AGCCCATATACACCGTGACATA 58.764 45.455 5.28 3.08 0.00 2.29
151 152 3.258372 AGCCCATATACACCGTGACATAG 59.742 47.826 5.28 0.00 0.00 2.23
152 153 3.006537 GCCCATATACACCGTGACATAGT 59.993 47.826 5.28 0.00 0.00 2.12
153 154 4.556233 CCCATATACACCGTGACATAGTG 58.444 47.826 5.28 6.33 37.53 2.74
154 155 3.987868 CCATATACACCGTGACATAGTGC 59.012 47.826 5.28 0.00 34.83 4.40
156 157 2.357327 TACACCGTGACATAGTGCAC 57.643 50.000 9.40 9.40 34.83 4.57
158 159 1.070821 CACCGTGACATAGTGCACTG 58.929 55.000 29.57 16.83 32.98 3.66
159 160 0.670546 ACCGTGACATAGTGCACTGC 60.671 55.000 29.57 15.43 32.98 4.40
160 161 0.670239 CCGTGACATAGTGCACTGCA 60.670 55.000 29.57 17.72 35.60 4.41
161 162 0.717784 CGTGACATAGTGCACTGCAG 59.282 55.000 29.57 19.54 40.08 4.41
162 163 0.445436 GTGACATAGTGCACTGCAGC 59.555 55.000 29.57 15.77 40.08 5.25
169 170 3.024784 TGCACTGCAGCAACGAAG 58.975 55.556 15.27 0.00 42.46 3.79
171 172 1.375853 TGCACTGCAGCAACGAAGTT 61.376 50.000 15.27 0.00 43.00 2.66
172 173 2.076985 TGCACTGCAGCAACGAAGTTA 61.077 47.619 15.27 0.00 41.14 2.24
187 188 4.682860 ACGAAGTTAGGTTGTACATTCGTG 59.317 41.667 23.05 4.25 46.47 4.35
188 189 4.433805 CGAAGTTAGGTTGTACATTCGTGC 60.434 45.833 14.35 0.00 34.83 5.34
189 190 2.991190 AGTTAGGTTGTACATTCGTGCG 59.009 45.455 0.00 0.00 0.00 5.34
190 191 2.728690 TAGGTTGTACATTCGTGCGT 57.271 45.000 0.00 0.00 0.00 5.24
191 192 1.144969 AGGTTGTACATTCGTGCGTG 58.855 50.000 0.00 0.00 0.00 5.34
192 193 0.863144 GGTTGTACATTCGTGCGTGT 59.137 50.000 0.00 0.00 0.00 4.49
193 194 1.397945 GGTTGTACATTCGTGCGTGTG 60.398 52.381 0.00 0.00 0.00 3.82
194 195 0.862490 TTGTACATTCGTGCGTGTGG 59.138 50.000 0.00 0.00 0.00 4.17
196 197 0.863144 GTACATTCGTGCGTGTGGTT 59.137 50.000 0.00 0.00 0.00 3.67
197 198 1.136446 GTACATTCGTGCGTGTGGTTC 60.136 52.381 0.00 0.00 0.00 3.62
198 199 1.154672 CATTCGTGCGTGTGGTTCG 60.155 57.895 0.00 0.00 0.00 3.95
205 206 2.657296 CGTGTGGTTCGCTGTCGT 60.657 61.111 0.00 0.00 36.96 4.34
207 208 2.279851 TGTGGTTCGCTGTCGTGG 60.280 61.111 0.00 0.00 36.96 4.94
208 209 3.041940 GTGGTTCGCTGTCGTGGG 61.042 66.667 0.00 0.00 36.96 4.61
209 210 4.980805 TGGTTCGCTGTCGTGGGC 62.981 66.667 0.00 0.00 36.96 5.36
210 211 4.681978 GGTTCGCTGTCGTGGGCT 62.682 66.667 0.00 0.00 36.96 5.19
211 212 3.414700 GTTCGCTGTCGTGGGCTG 61.415 66.667 0.00 0.00 36.96 4.85
212 213 4.680237 TTCGCTGTCGTGGGCTGG 62.680 66.667 0.00 0.00 36.96 4.85
222 223 3.646715 TGGGCTGGTGGCTGGTAC 61.647 66.667 0.00 0.00 41.46 3.34
223 224 3.646715 GGGCTGGTGGCTGGTACA 61.647 66.667 0.00 0.00 41.46 2.90
224 225 2.677228 GGCTGGTGGCTGGTACAT 59.323 61.111 0.00 0.00 38.20 2.29
226 227 0.611896 GGCTGGTGGCTGGTACATTT 60.612 55.000 0.00 0.00 38.20 2.32
227 228 1.340600 GGCTGGTGGCTGGTACATTTA 60.341 52.381 0.00 0.00 38.20 1.40
228 229 2.017049 GCTGGTGGCTGGTACATTTAG 58.983 52.381 0.00 0.00 38.20 1.85
229 230 2.618045 GCTGGTGGCTGGTACATTTAGT 60.618 50.000 0.00 0.00 38.20 2.24
230 231 3.009723 CTGGTGGCTGGTACATTTAGTG 58.990 50.000 0.00 0.00 38.20 2.74
232 233 1.396996 GTGGCTGGTACATTTAGTGCG 59.603 52.381 0.00 0.00 38.20 5.34
233 234 1.002659 TGGCTGGTACATTTAGTGCGT 59.997 47.619 0.00 0.00 38.20 5.24
234 235 1.396996 GGCTGGTACATTTAGTGCGTG 59.603 52.381 0.00 0.00 38.20 5.34
235 236 1.202031 GCTGGTACATTTAGTGCGTGC 60.202 52.381 0.00 0.00 38.20 5.34
236 237 2.073056 CTGGTACATTTAGTGCGTGCA 58.927 47.619 0.00 0.00 38.20 4.57
237 238 2.677836 CTGGTACATTTAGTGCGTGCAT 59.322 45.455 0.00 0.00 38.20 3.96
238 239 2.418280 TGGTACATTTAGTGCGTGCATG 59.582 45.455 0.09 0.09 33.10 4.06
239 240 2.440501 GTACATTTAGTGCGTGCATGC 58.559 47.619 24.20 24.20 0.00 4.06
240 241 0.179192 ACATTTAGTGCGTGCATGCG 60.179 50.000 25.05 9.47 37.81 4.73
252 253 3.502455 CATGCGCTGCGTGTGGAT 61.502 61.111 24.04 5.47 40.30 3.41
261 262 2.434884 CGTGTGGATCGCTGGCTT 60.435 61.111 0.00 0.00 0.00 4.35
262 263 2.456119 CGTGTGGATCGCTGGCTTC 61.456 63.158 0.00 0.00 0.00 3.86
263 264 2.125552 TGTGGATCGCTGGCTTCG 60.126 61.111 0.00 0.00 0.00 3.79
264 265 2.892425 GTGGATCGCTGGCTTCGG 60.892 66.667 0.00 0.00 0.00 4.30
265 266 4.161295 TGGATCGCTGGCTTCGGG 62.161 66.667 0.00 0.00 0.00 5.14
276 277 1.746991 GCTTCGGGCCTCCTTTCAG 60.747 63.158 0.84 0.00 34.27 3.02
277 278 1.983224 CTTCGGGCCTCCTTTCAGA 59.017 57.895 0.84 0.00 0.00 3.27
278 279 0.391793 CTTCGGGCCTCCTTTCAGAC 60.392 60.000 0.84 0.00 0.00 3.51
279 280 0.836400 TTCGGGCCTCCTTTCAGACT 60.836 55.000 0.84 0.00 0.00 3.24
281 282 0.461961 CGGGCCTCCTTTCAGACTAG 59.538 60.000 0.84 0.00 0.00 2.57
282 283 0.179234 GGGCCTCCTTTCAGACTAGC 59.821 60.000 0.84 0.00 0.00 3.42
292 293 1.951209 TCAGACTAGCCACAATGGGA 58.049 50.000 0.00 0.00 38.19 4.37
294 295 2.237143 TCAGACTAGCCACAATGGGAAG 59.763 50.000 0.00 0.00 38.19 3.46
295 296 2.026822 CAGACTAGCCACAATGGGAAGT 60.027 50.000 0.00 0.00 38.19 3.01
453 459 2.708861 TCAAGCACCCCTGACTAAAGAA 59.291 45.455 0.00 0.00 0.00 2.52
481 487 5.464030 ACGACTAGTCTTGAGGCTAAAAA 57.536 39.130 20.34 0.00 0.00 1.94
546 552 4.950050 TCTCTCCTCATTTAATTCCGCTC 58.050 43.478 0.00 0.00 0.00 5.03
547 553 3.717707 TCTCCTCATTTAATTCCGCTCG 58.282 45.455 0.00 0.00 0.00 5.03
548 554 3.132289 TCTCCTCATTTAATTCCGCTCGT 59.868 43.478 0.00 0.00 0.00 4.18
551 557 5.421277 TCCTCATTTAATTCCGCTCGTTTA 58.579 37.500 0.00 0.00 0.00 2.01
552 558 5.875910 TCCTCATTTAATTCCGCTCGTTTAA 59.124 36.000 0.00 0.00 0.00 1.52
553 559 5.963586 CCTCATTTAATTCCGCTCGTTTAAC 59.036 40.000 0.00 0.00 0.00 2.01
554 560 6.402766 CCTCATTTAATTCCGCTCGTTTAACA 60.403 38.462 0.00 0.00 0.00 2.41
555 561 6.308675 TCATTTAATTCCGCTCGTTTAACAC 58.691 36.000 0.00 0.00 0.00 3.32
556 562 5.670149 TTTAATTCCGCTCGTTTAACACA 57.330 34.783 0.00 0.00 0.00 3.72
557 563 5.866335 TTAATTCCGCTCGTTTAACACAT 57.134 34.783 0.00 0.00 0.00 3.21
558 564 3.740044 ATTCCGCTCGTTTAACACATG 57.260 42.857 0.00 0.00 0.00 3.21
559 565 0.793861 TCCGCTCGTTTAACACATGC 59.206 50.000 0.00 0.00 0.00 4.06
560 566 0.518355 CCGCTCGTTTAACACATGCG 60.518 55.000 11.65 11.65 42.79 4.73
574 580 2.350804 CACATGCGAGTTCTGGATTGAG 59.649 50.000 0.00 0.00 0.00 3.02
605 612 9.866655 TGGAGGATAATAAATGCTCAATAACTT 57.133 29.630 8.48 0.00 38.10 2.66
663 670 4.323257 GGGTGAGGCTAGCAAGTTTTAGTA 60.323 45.833 18.24 0.00 0.00 1.82
676 683 9.788889 AGCAAGTTTTAGTACCACTACTTTTAT 57.211 29.630 0.00 0.00 34.79 1.40
703 710 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
704 711 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
709 716 2.154567 ACGTATCCAAGCACCCTCTA 57.845 50.000 0.00 0.00 0.00 2.43
713 720 3.635373 CGTATCCAAGCACCCTCTAAGTA 59.365 47.826 0.00 0.00 0.00 2.24
716 723 2.170607 TCCAAGCACCCTCTAAGTATGC 59.829 50.000 0.00 0.00 36.52 3.14
718 725 3.388024 CCAAGCACCCTCTAAGTATGCTA 59.612 47.826 0.00 0.00 45.65 3.49
719 726 4.141711 CCAAGCACCCTCTAAGTATGCTAA 60.142 45.833 0.00 0.00 45.65 3.09
727 734 5.822519 CCCTCTAAGTATGCTAACATGCAAA 59.177 40.000 0.00 0.00 46.61 3.68
731 738 5.649782 AAGTATGCTAACATGCAAAGCTT 57.350 34.783 13.68 0.00 46.61 3.74
765 772 7.170965 AGGTTATAGACTGATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
766 773 7.017551 AGGTTATAGACTGATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
767 774 7.119846 GGTTATAGACTGATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
768 775 4.508551 AGACTGATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
778 785 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
779 786 4.279982 TGCATTGGGACATGTGATGTTAT 58.720 39.130 1.15 0.00 45.03 1.89
780 787 5.444176 TGCATTGGGACATGTGATGTTATA 58.556 37.500 1.15 0.00 45.03 0.98
787 794 8.541899 TGGGACATGTGATGTTATAGTAACTA 57.458 34.615 1.15 0.00 45.03 2.24
788 795 8.638873 TGGGACATGTGATGTTATAGTAACTAG 58.361 37.037 1.15 0.00 45.03 2.57
789 796 8.639761 GGGACATGTGATGTTATAGTAACTAGT 58.360 37.037 1.15 0.00 45.03 2.57
827 834 7.122948 TGAAACTACCTCTCTCCTCATTAACTC 59.877 40.741 0.00 0.00 0.00 3.01
828 835 6.080969 ACTACCTCTCTCCTCATTAACTCA 57.919 41.667 0.00 0.00 0.00 3.41
829 836 6.678547 ACTACCTCTCTCCTCATTAACTCAT 58.321 40.000 0.00 0.00 0.00 2.90
841 848 4.094294 TCATTAACTCATTGCCACGTAAGC 59.906 41.667 2.88 2.88 45.62 3.09
843 850 1.156736 ACTCATTGCCACGTAAGCAC 58.843 50.000 11.64 0.00 40.69 4.40
845 852 1.739466 CTCATTGCCACGTAAGCACAT 59.261 47.619 11.64 6.73 40.69 3.21
859 866 2.056094 GCACATTTGCTGAGTTGGAC 57.944 50.000 0.00 0.00 46.17 4.02
860 867 1.610522 GCACATTTGCTGAGTTGGACT 59.389 47.619 0.00 0.00 46.17 3.85
861 868 2.351157 GCACATTTGCTGAGTTGGACTC 60.351 50.000 0.00 1.21 46.17 3.36
862 869 5.728820 GCACATTTGCTGAGTTGGACTCG 62.729 52.174 0.00 0.90 42.81 4.18
872 879 4.175787 GAGTTGGACTCGATGTTACTGT 57.824 45.455 0.00 0.00 35.28 3.55
873 880 4.557205 GAGTTGGACTCGATGTTACTGTT 58.443 43.478 0.00 0.00 35.28 3.16
875 882 4.038763 AGTTGGACTCGATGTTACTGTTGA 59.961 41.667 0.00 0.00 0.00 3.18
876 883 4.594123 TGGACTCGATGTTACTGTTGAA 57.406 40.909 0.00 0.00 0.00 2.69
877 884 4.556233 TGGACTCGATGTTACTGTTGAAG 58.444 43.478 0.00 0.00 0.00 3.02
879 886 4.989168 GGACTCGATGTTACTGTTGAAGTT 59.011 41.667 0.00 0.00 40.56 2.66
880 887 6.154445 GGACTCGATGTTACTGTTGAAGTTA 58.846 40.000 0.00 0.00 40.56 2.24
882 889 6.746120 ACTCGATGTTACTGTTGAAGTTACT 58.254 36.000 0.00 0.00 38.87 2.24
883 890 6.862090 ACTCGATGTTACTGTTGAAGTTACTC 59.138 38.462 0.00 0.00 38.87 2.59
884 891 6.154445 TCGATGTTACTGTTGAAGTTACTCC 58.846 40.000 0.00 0.00 38.87 3.85
885 892 5.347907 CGATGTTACTGTTGAAGTTACTCCC 59.652 44.000 0.00 0.00 38.87 4.30
886 893 5.617528 TGTTACTGTTGAAGTTACTCCCA 57.382 39.130 0.00 0.00 38.87 4.37
888 895 5.129815 TGTTACTGTTGAAGTTACTCCCACT 59.870 40.000 0.00 0.00 38.87 4.00
889 896 6.324512 TGTTACTGTTGAAGTTACTCCCACTA 59.675 38.462 0.00 0.00 38.87 2.74
890 897 7.015877 TGTTACTGTTGAAGTTACTCCCACTAT 59.984 37.037 0.00 0.00 38.87 2.12
891 898 5.794894 ACTGTTGAAGTTACTCCCACTATG 58.205 41.667 0.00 0.00 34.57 2.23
893 900 3.906720 TGAAGTTACTCCCACTATGGC 57.093 47.619 0.00 0.00 35.79 4.40
895 902 4.616553 TGAAGTTACTCCCACTATGGCTA 58.383 43.478 0.00 0.00 35.79 3.93
899 906 4.079096 AGTTACTCCCACTATGGCTAGTCT 60.079 45.833 0.00 0.00 35.99 3.24
900 907 2.952116 ACTCCCACTATGGCTAGTCTC 58.048 52.381 0.00 0.00 35.99 3.36
901 908 2.245028 ACTCCCACTATGGCTAGTCTCA 59.755 50.000 0.00 0.00 35.99 3.27
902 909 2.625790 CTCCCACTATGGCTAGTCTCAC 59.374 54.545 0.00 0.00 35.99 3.51
903 910 2.245028 TCCCACTATGGCTAGTCTCACT 59.755 50.000 0.00 0.00 35.99 3.41
904 911 2.363680 CCCACTATGGCTAGTCTCACTG 59.636 54.545 0.00 0.00 35.99 3.66
905 912 2.363680 CCACTATGGCTAGTCTCACTGG 59.636 54.545 0.00 0.00 35.99 4.00
906 913 2.363680 CACTATGGCTAGTCTCACTGGG 59.636 54.545 0.00 0.00 35.99 4.45
908 915 1.958288 ATGGCTAGTCTCACTGGGTT 58.042 50.000 0.00 0.00 0.00 4.11
909 916 0.976641 TGGCTAGTCTCACTGGGTTG 59.023 55.000 0.00 0.00 0.00 3.77
910 917 0.977395 GGCTAGTCTCACTGGGTTGT 59.023 55.000 0.00 0.00 0.00 3.32
911 918 2.176889 GGCTAGTCTCACTGGGTTGTA 58.823 52.381 0.00 0.00 0.00 2.41
912 919 2.094130 GGCTAGTCTCACTGGGTTGTAC 60.094 54.545 0.00 0.00 0.00 2.90
913 920 2.094130 GCTAGTCTCACTGGGTTGTACC 60.094 54.545 0.00 0.00 37.60 3.34
922 929 2.929477 GGTTGTACCCCGGGTCCA 60.929 66.667 21.85 4.67 37.09 4.02
924 931 1.455412 GTTGTACCCCGGGTCCAAA 59.545 57.895 21.85 5.73 33.52 3.28
925 932 0.178995 GTTGTACCCCGGGTCCAAAA 60.179 55.000 21.85 4.13 33.52 2.44
926 933 0.554792 TTGTACCCCGGGTCCAAAAA 59.445 50.000 21.85 2.95 37.09 1.94
928 935 1.991070 TGTACCCCGGGTCCAAAAATA 59.009 47.619 21.85 0.00 37.09 1.40
929 936 2.581709 TGTACCCCGGGTCCAAAAATAT 59.418 45.455 21.85 0.00 37.09 1.28
930 937 2.932184 ACCCCGGGTCCAAAAATATT 57.068 45.000 21.85 0.00 0.00 1.28
931 938 2.742348 ACCCCGGGTCCAAAAATATTC 58.258 47.619 21.85 0.00 0.00 1.75
934 941 3.772572 CCCCGGGTCCAAAAATATTCTTT 59.227 43.478 21.85 0.00 0.00 2.52
936 943 5.600898 CCCCGGGTCCAAAAATATTCTTTAT 59.399 40.000 21.85 0.00 0.00 1.40
937 944 6.778559 CCCCGGGTCCAAAAATATTCTTTATA 59.221 38.462 21.85 0.00 0.00 0.98
939 946 7.285858 CCCGGGTCCAAAAATATTCTTTATACA 59.714 37.037 14.18 0.00 0.00 2.29
960 967 0.958382 TGAAAATTCTCACGCCCCGG 60.958 55.000 0.00 0.00 0.00 5.73
961 968 1.654023 GAAAATTCTCACGCCCCGGG 61.654 60.000 15.80 15.80 0.00 5.73
962 969 4.796495 AATTCTCACGCCCCGGGC 62.796 66.667 19.64 19.64 46.75 6.13
1001 1008 3.631046 CCCAGCTCCGCCCCTATC 61.631 72.222 0.00 0.00 0.00 2.08
1002 1009 3.631046 CCAGCTCCGCCCCTATCC 61.631 72.222 0.00 0.00 0.00 2.59
1003 1010 3.631046 CAGCTCCGCCCCTATCCC 61.631 72.222 0.00 0.00 0.00 3.85
1005 1012 3.315140 GCTCCGCCCCTATCCCTC 61.315 72.222 0.00 0.00 0.00 4.30
1054 3268 8.514330 ACGAGAGTCTAGAAATAATCTTCTGT 57.486 34.615 7.32 0.00 44.19 3.41
1057 3271 7.496747 AGAGTCTAGAAATAATCTTCTGTGCC 58.503 38.462 0.00 0.00 39.71 5.01
1062 3276 7.987458 TCTAGAAATAATCTTCTGTGCCGAAAT 59.013 33.333 0.00 0.00 39.71 2.17
1204 3426 3.921521 GGACTCCTCGACCGATGT 58.078 61.111 0.00 0.00 0.00 3.06
1205 3427 1.433879 GGACTCCTCGACCGATGTG 59.566 63.158 0.00 0.00 0.00 3.21
1206 3428 1.433879 GACTCCTCGACCGATGTGG 59.566 63.158 0.00 0.00 46.41 4.17
1207 3429 2.105128 CTCCTCGACCGATGTGGC 59.895 66.667 0.00 0.00 43.94 5.01
1208 3430 3.758088 CTCCTCGACCGATGTGGCG 62.758 68.421 0.00 0.00 43.94 5.69
1209 3431 3.822192 CCTCGACCGATGTGGCGA 61.822 66.667 0.00 0.00 43.94 5.54
1210 3432 2.180769 CTCGACCGATGTGGCGAA 59.819 61.111 0.00 0.00 42.74 4.70
1257 3479 1.298413 CTACGACTACGCATGCGCT 60.298 57.895 38.15 26.38 44.19 5.92
1262 3484 2.202797 CTACGCATGCGCTCACCT 60.203 61.111 38.15 21.03 44.19 4.00
1348 3580 0.037303 TTCTTGGCTTCTCCCAGCAG 59.963 55.000 0.00 0.00 42.10 4.24
1351 3583 0.615331 TTGGCTTCTCCCAGCAGTAG 59.385 55.000 0.00 0.00 42.10 2.57
1365 3597 2.266055 GTAGCTTCACCGGCTGCT 59.734 61.111 0.00 8.92 40.52 4.24
1384 3634 3.380004 TGCTTCAACCACCAACTTAAGTG 59.620 43.478 9.34 0.00 0.00 3.16
1407 3660 3.935828 GAGATTAACAACTCCAGTCCTGC 59.064 47.826 0.00 0.00 0.00 4.85
1413 3666 4.767255 CTCCAGTCCTGCCACGCC 62.767 72.222 0.00 0.00 0.00 5.68
1432 3686 2.484770 GCCCGTGAGCATATAAGAACCA 60.485 50.000 0.00 0.00 0.00 3.67
1435 3689 3.804325 CCGTGAGCATATAAGAACCACAG 59.196 47.826 0.00 0.00 0.00 3.66
1441 3695 4.130118 GCATATAAGAACCACAGGACCTG 58.870 47.826 20.45 20.45 37.52 4.00
1461 3715 0.661552 CCTGCAATCAGCCATTCTCG 59.338 55.000 0.00 0.00 44.83 4.04
1462 3716 0.029035 CTGCAATCAGCCATTCTCGC 59.971 55.000 0.00 0.00 44.83 5.03
1469 3723 2.203126 GCCATTCTCGCCCTCCAG 60.203 66.667 0.00 0.00 0.00 3.86
1478 3732 2.893398 GCCCTCCAGTCTACCGTG 59.107 66.667 0.00 0.00 0.00 4.94
1483 3773 2.353803 CCCTCCAGTCTACCGTGAAAAG 60.354 54.545 0.00 0.00 0.00 2.27
1504 3794 3.747976 GCCACGCCATGTCCAACC 61.748 66.667 0.00 0.00 0.00 3.77
1509 3799 0.893727 ACGCCATGTCCAACCCTTTC 60.894 55.000 0.00 0.00 0.00 2.62
1510 3800 0.893270 CGCCATGTCCAACCCTTTCA 60.893 55.000 0.00 0.00 0.00 2.69
1516 3809 1.210967 TGTCCAACCCTTTCACGTCTT 59.789 47.619 0.00 0.00 0.00 3.01
1517 3810 1.602377 GTCCAACCCTTTCACGTCTTG 59.398 52.381 0.00 0.00 0.00 3.02
1569 3862 2.580326 GCATCGGCCATTGTTGCG 60.580 61.111 2.24 0.00 0.00 4.85
1593 3886 2.509336 GTCGGGTCGCACATCCTG 60.509 66.667 0.00 0.00 0.00 3.86
1622 3915 2.399356 GCTACTCCCGCACCAAAGC 61.399 63.158 0.00 0.00 0.00 3.51
1623 3916 1.745489 CTACTCCCGCACCAAAGCC 60.745 63.158 0.00 0.00 0.00 4.35
1650 3943 2.528743 CGGCACATGCATCGACTCC 61.529 63.158 6.15 0.00 44.36 3.85
1664 3957 2.504244 CTCCGACACGTTCTCCGC 60.504 66.667 0.00 0.00 41.42 5.54
1689 3982 2.780643 CATCGTTGGCGTCTGCAG 59.219 61.111 7.63 7.63 45.35 4.41
1713 4006 2.168054 CCCGGATGGTTTCGACAAC 58.832 57.895 0.73 0.00 0.00 3.32
1743 4036 2.640332 GGGTTGGATATCCCTCTTCCTC 59.360 54.545 19.34 5.33 40.48 3.71
1752 4045 0.820871 CCCTCTTCCTCCGTCTTGAG 59.179 60.000 0.00 0.00 0.00 3.02
1755 4048 1.480137 CTCTTCCTCCGTCTTGAGCAT 59.520 52.381 0.00 0.00 0.00 3.79
1762 4055 4.135306 CCTCCGTCTTGAGCATACTACTA 58.865 47.826 0.00 0.00 0.00 1.82
1763 4056 4.214545 CCTCCGTCTTGAGCATACTACTAG 59.785 50.000 0.00 0.00 0.00 2.57
1764 4057 3.564644 TCCGTCTTGAGCATACTACTAGC 59.435 47.826 0.00 0.00 0.00 3.42
1765 4058 3.566322 CCGTCTTGAGCATACTACTAGCT 59.434 47.826 0.00 0.00 42.17 3.32
1768 4061 5.449314 CGTCTTGAGCATACTACTAGCTGTT 60.449 44.000 0.00 0.00 39.02 3.16
1770 4063 6.814146 GTCTTGAGCATACTACTAGCTGTTTT 59.186 38.462 0.00 0.00 39.02 2.43
1771 4064 6.813649 TCTTGAGCATACTACTAGCTGTTTTG 59.186 38.462 0.00 0.00 39.02 2.44
1772 4065 6.280855 TGAGCATACTACTAGCTGTTTTGA 57.719 37.500 0.00 0.00 39.02 2.69
1783 4076 2.689983 AGCTGTTTTGAGGGTGAAGTTG 59.310 45.455 0.00 0.00 0.00 3.16
1791 4084 1.882623 GAGGGTGAAGTTGAAGCCAAG 59.117 52.381 6.24 0.00 36.38 3.61
1809 4102 4.151157 GCCAAGTTCAAAATTAGCTTGCTG 59.849 41.667 5.26 0.00 36.26 4.41
1855 4148 3.056322 GTCTTACACCCGTAACATGGAGT 60.056 47.826 0.00 0.00 33.95 3.85
1899 4192 1.272212 GGTGGTAATGCTGTGTTTGGG 59.728 52.381 0.00 0.00 0.00 4.12
1901 4194 1.959985 TGGTAATGCTGTGTTTGGGTG 59.040 47.619 0.00 0.00 0.00 4.61
1929 4222 0.179084 TCATCCGGCATTTCGACCTC 60.179 55.000 0.00 0.00 0.00 3.85
1941 4234 2.232756 TCGACCTCGAGAGATCAGAG 57.767 55.000 15.71 0.00 44.22 3.35
1962 4255 3.833070 AGTACCTGAAGGACGATGTCTTT 59.167 43.478 2.62 0.00 34.63 2.52
1966 4259 4.082136 ACCTGAAGGACGATGTCTTTAGTC 60.082 45.833 2.62 0.00 32.15 2.59
2009 4302 2.811431 TGGTAAGCAAAATCGTCACCAG 59.189 45.455 0.00 0.00 31.25 4.00
2013 4306 1.523154 GCAAAATCGTCACCAGGGCA 61.523 55.000 0.00 0.00 0.00 5.36
2105 4430 0.107993 ATGTCATGAGTGTGGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
2117 4442 2.486966 GAGGCGATGTTGCAAGGC 59.513 61.111 0.00 0.00 36.28 4.35
2119 4444 3.372730 GGCGATGTTGCAAGGCCA 61.373 61.111 19.99 8.03 43.23 5.36
2121 4446 2.918345 GCGATGTTGCAAGGCCACA 61.918 57.895 5.01 0.00 38.50 4.17
2165 4498 8.192110 AGCTACTACTATTACTTCTGTTTCAGC 58.808 37.037 0.00 0.00 0.00 4.26
2223 4559 3.678548 GGTTTGGTCATCGAGTCTGTAAC 59.321 47.826 0.00 0.00 0.00 2.50
2233 4569 3.692593 TCGAGTCTGTAACGGAATCATCA 59.307 43.478 0.00 0.00 34.05 3.07
2238 4574 5.639506 AGTCTGTAACGGAATCATCAAACTG 59.360 40.000 0.00 0.00 0.00 3.16
2276 4612 5.788467 TGAGTCGTGTCGTTTTTAACTTTC 58.212 37.500 0.00 0.00 0.00 2.62
2343 4697 1.742761 ATGTCGAGTTGGGCATGAAG 58.257 50.000 0.00 0.00 0.00 3.02
2345 4699 1.079503 GTCGAGTTGGGCATGAAGTC 58.920 55.000 0.00 0.00 0.00 3.01
2382 4736 5.163513 CCTATGCAAGTCAATGAAAACCAC 58.836 41.667 0.00 0.00 0.00 4.16
2386 4740 4.141756 TGCAAGTCAATGAAAACCACCAAT 60.142 37.500 0.00 0.00 0.00 3.16
2407 4761 6.849305 CCAATCGTAGTTCAACTTTGTGTTAC 59.151 38.462 0.00 0.00 37.07 2.50
2415 4769 7.280356 AGTTCAACTTTGTGTTACTGGAGTAT 58.720 34.615 0.00 0.00 37.07 2.12
2468 4822 0.676782 CGGGGGTACTCAAGCTTTGG 60.677 60.000 0.00 0.00 0.00 3.28
2491 4845 0.734889 ATTGCATCTTACGCTGGCAC 59.265 50.000 0.00 0.00 33.66 5.01
2534 4889 2.130426 ATCATCGAGCAGCGGGAGT 61.130 57.895 0.00 0.00 41.33 3.85
2563 4925 0.818445 AGCACTGCATATGCCTCAGC 60.818 55.000 24.54 20.82 44.53 4.26
2607 4969 4.375988 GCACGAGACGATTTGTTCTTTTTC 59.624 41.667 0.00 0.00 0.00 2.29
2655 5019 8.817092 AGTTAGTACAGAAAAGAGAGAGCTAT 57.183 34.615 0.00 0.00 0.00 2.97
2672 5036 8.891720 AGAGAGCTATCATTTCTGAAATTTGTC 58.108 33.333 11.60 5.14 34.37 3.18
2753 5117 9.877178 ACAAATCGAAGTATAGATTCACTTTCT 57.123 29.630 0.00 0.00 36.20 2.52
2793 5158 5.772825 ATATACGAGGGTTAACTTACGCA 57.227 39.130 5.42 0.58 33.76 5.24
2798 5163 3.495753 CGAGGGTTAACTTACGCACTTTT 59.504 43.478 5.42 0.00 33.76 2.27
3089 5518 7.816031 GCATACATTATCATTTTGGAAGATGGG 59.184 37.037 0.00 0.00 0.00 4.00
3173 5602 2.678580 TCCACCCGCGAGACATGA 60.679 61.111 8.23 0.00 0.00 3.07
3185 5614 0.689055 AGACATGACTCTGCTTGGCA 59.311 50.000 0.00 0.00 36.92 4.92
3209 5647 1.530419 TGGGCAACGAGGCACATTT 60.530 52.632 3.97 0.00 43.53 2.32
3237 5675 3.695830 ATCGACCTCAACCTTTTGCTA 57.304 42.857 0.00 0.00 32.17 3.49
3240 5678 2.996621 CGACCTCAACCTTTTGCTAGAG 59.003 50.000 0.00 0.00 32.17 2.43
3269 5713 3.117888 GCCAGAATCTAGGTTTCATCCCA 60.118 47.826 0.00 0.00 0.00 4.37
3277 5721 6.387192 TCTAGGTTTCATCCCAAAGAATCA 57.613 37.500 0.00 0.00 0.00 2.57
3291 5735 5.009410 CCAAAGAATCAGTCCAAGCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
3295 5739 1.069204 TCAGTCCAAGCATATCCGAGC 59.931 52.381 0.00 0.00 0.00 5.03
3296 5740 1.069823 CAGTCCAAGCATATCCGAGCT 59.930 52.381 0.00 0.00 44.31 4.09
3318 5762 5.163754 GCTATGCTTTCAACAAGGTAACGAT 60.164 40.000 0.00 0.00 46.39 3.73
3323 5767 6.077838 GCTTTCAACAAGGTAACGATGTAAG 58.922 40.000 0.00 0.00 40.03 2.34
3327 5771 7.789273 TCAACAAGGTAACGATGTAAGAAAA 57.211 32.000 0.00 0.00 40.03 2.29
3331 5775 8.161699 ACAAGGTAACGATGTAAGAAAACATT 57.838 30.769 0.00 0.00 40.17 2.71
3341 5785 5.688823 TGTAAGAAAACATTGTCATCGCTG 58.311 37.500 0.00 0.00 0.00 5.18
3378 5822 5.167303 GGTCTGACCTAGGTTTTCATCTT 57.833 43.478 17.53 0.00 34.73 2.40
3385 5829 5.735766 ACCTAGGTTTTCATCTTGTAGCTC 58.264 41.667 9.21 0.00 0.00 4.09
3389 5833 4.220821 AGGTTTTCATCTTGTAGCTCGAGA 59.779 41.667 18.75 0.00 40.44 4.04
3390 5834 4.929808 GGTTTTCATCTTGTAGCTCGAGAA 59.070 41.667 18.75 0.00 39.69 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.070758 AGCTCATGGTTACGCTATGGG 59.929 52.381 0.00 0.00 39.29 4.00
1 2 2.533266 AGCTCATGGTTACGCTATGG 57.467 50.000 0.00 0.00 36.79 2.74
2 3 5.696270 TCATTAAGCTCATGGTTACGCTATG 59.304 40.000 6.11 0.00 36.09 2.23
3 4 5.853936 TCATTAAGCTCATGGTTACGCTAT 58.146 37.500 6.11 0.00 36.09 2.97
4 5 5.270893 TCATTAAGCTCATGGTTACGCTA 57.729 39.130 6.11 0.00 36.09 4.26
8 9 6.985188 TCAGTTCATTAAGCTCATGGTTAC 57.015 37.500 6.11 3.55 36.09 2.50
9 10 6.479990 CGATCAGTTCATTAAGCTCATGGTTA 59.520 38.462 6.11 0.00 35.36 2.85
10 11 5.295292 CGATCAGTTCATTAAGCTCATGGTT 59.705 40.000 6.11 0.00 37.65 3.67
11 12 4.813161 CGATCAGTTCATTAAGCTCATGGT 59.187 41.667 6.11 0.00 0.00 3.55
12 13 4.813161 ACGATCAGTTCATTAAGCTCATGG 59.187 41.667 6.11 0.00 0.00 3.66
13 14 5.292834 ACACGATCAGTTCATTAAGCTCATG 59.707 40.000 0.00 0.00 0.00 3.07
15 16 4.627035 CACACGATCAGTTCATTAAGCTCA 59.373 41.667 0.00 0.00 0.00 4.26
16 17 4.864806 TCACACGATCAGTTCATTAAGCTC 59.135 41.667 0.00 0.00 0.00 4.09
17 18 4.820897 TCACACGATCAGTTCATTAAGCT 58.179 39.130 0.00 0.00 0.00 3.74
18 19 5.725110 ATCACACGATCAGTTCATTAAGC 57.275 39.130 0.00 0.00 0.00 3.09
19 20 8.185003 TGTTATCACACGATCAGTTCATTAAG 57.815 34.615 0.00 0.00 32.73 1.85
21 22 6.255670 GCTGTTATCACACGATCAGTTCATTA 59.744 38.462 0.00 0.00 32.73 1.90
22 23 5.063944 GCTGTTATCACACGATCAGTTCATT 59.936 40.000 0.00 0.00 32.73 2.57
23 24 4.568359 GCTGTTATCACACGATCAGTTCAT 59.432 41.667 0.00 0.00 32.73 2.57
24 25 3.926527 GCTGTTATCACACGATCAGTTCA 59.073 43.478 0.00 0.00 32.73 3.18
26 27 4.177026 GAGCTGTTATCACACGATCAGTT 58.823 43.478 0.00 0.00 32.73 3.16
28 29 3.119291 GGAGCTGTTATCACACGATCAG 58.881 50.000 0.00 0.00 32.73 2.90
29 30 2.495669 TGGAGCTGTTATCACACGATCA 59.504 45.455 0.00 0.00 32.73 2.92
31 32 3.827008 ATGGAGCTGTTATCACACGAT 57.173 42.857 0.00 0.00 35.50 3.73
32 33 4.159693 ACTTATGGAGCTGTTATCACACGA 59.840 41.667 0.00 0.00 0.00 4.35
33 34 4.268644 CACTTATGGAGCTGTTATCACACG 59.731 45.833 0.00 0.00 0.00 4.49
35 36 5.046663 TCACACTTATGGAGCTGTTATCACA 60.047 40.000 0.00 0.00 0.00 3.58
36 37 5.419542 TCACACTTATGGAGCTGTTATCAC 58.580 41.667 0.00 0.00 0.00 3.06
37 38 5.675684 TCACACTTATGGAGCTGTTATCA 57.324 39.130 0.00 0.00 0.00 2.15
38 39 5.874810 TGTTCACACTTATGGAGCTGTTATC 59.125 40.000 0.00 0.00 0.00 1.75
39 40 5.804639 TGTTCACACTTATGGAGCTGTTAT 58.195 37.500 0.00 0.00 0.00 1.89
40 41 5.222079 TGTTCACACTTATGGAGCTGTTA 57.778 39.130 0.00 0.00 0.00 2.41
41 42 4.085357 TGTTCACACTTATGGAGCTGTT 57.915 40.909 0.00 0.00 0.00 3.16
42 43 3.769739 TGTTCACACTTATGGAGCTGT 57.230 42.857 0.00 0.00 0.00 4.40
43 44 3.189287 GGTTGTTCACACTTATGGAGCTG 59.811 47.826 0.00 0.00 0.00 4.24
44 45 3.181445 TGGTTGTTCACACTTATGGAGCT 60.181 43.478 0.00 0.00 0.00 4.09
45 46 3.058224 GTGGTTGTTCACACTTATGGAGC 60.058 47.826 0.00 0.00 37.57 4.70
46 47 4.214119 CAGTGGTTGTTCACACTTATGGAG 59.786 45.833 0.00 0.00 45.03 3.86
47 48 4.133820 CAGTGGTTGTTCACACTTATGGA 58.866 43.478 0.00 0.00 45.03 3.41
48 49 3.253188 CCAGTGGTTGTTCACACTTATGG 59.747 47.826 0.00 0.00 45.03 2.74
49 50 3.882888 ACCAGTGGTTGTTCACACTTATG 59.117 43.478 9.70 0.00 45.03 1.90
50 51 4.164843 ACCAGTGGTTGTTCACACTTAT 57.835 40.909 9.70 0.00 45.03 1.73
51 52 3.637911 ACCAGTGGTTGTTCACACTTA 57.362 42.857 9.70 0.00 45.03 2.24
52 53 2.507407 ACCAGTGGTTGTTCACACTT 57.493 45.000 9.70 0.00 45.03 3.16
53 54 2.365582 GAACCAGTGGTTGTTCACACT 58.634 47.619 32.08 4.44 46.95 3.55
54 55 1.063469 CGAACCAGTGGTTGTTCACAC 59.937 52.381 32.08 14.24 46.95 3.82
55 56 1.374560 CGAACCAGTGGTTGTTCACA 58.625 50.000 32.08 0.00 46.95 3.58
56 57 0.028902 GCGAACCAGTGGTTGTTCAC 59.971 55.000 32.08 15.68 46.95 3.18
57 58 1.433053 CGCGAACCAGTGGTTGTTCA 61.433 55.000 32.08 0.00 46.95 3.18
58 59 1.278637 CGCGAACCAGTGGTTGTTC 59.721 57.895 32.08 16.81 46.95 3.18
59 60 1.027792 AACGCGAACCAGTGGTTGTT 61.028 50.000 32.08 24.36 46.95 2.83
61 62 0.591236 CAAACGCGAACCAGTGGTTG 60.591 55.000 32.08 22.56 46.95 3.77
63 64 0.534203 ATCAAACGCGAACCAGTGGT 60.534 50.000 15.93 9.70 37.65 4.16
64 65 0.591170 AATCAAACGCGAACCAGTGG 59.409 50.000 15.93 7.91 0.00 4.00
65 66 1.531149 AGAATCAAACGCGAACCAGTG 59.469 47.619 15.93 0.84 0.00 3.66
66 67 1.531149 CAGAATCAAACGCGAACCAGT 59.469 47.619 15.93 0.00 0.00 4.00
67 68 1.531149 ACAGAATCAAACGCGAACCAG 59.469 47.619 15.93 0.00 0.00 4.00
68 69 1.588674 ACAGAATCAAACGCGAACCA 58.411 45.000 15.93 0.00 0.00 3.67
69 70 2.681152 AACAGAATCAAACGCGAACC 57.319 45.000 15.93 0.00 0.00 3.62
70 71 6.461698 CAGTTATAACAGAATCAAACGCGAAC 59.538 38.462 15.93 0.00 0.00 3.95
71 72 6.530567 CAGTTATAACAGAATCAAACGCGAA 58.469 36.000 15.93 0.00 0.00 4.70
72 73 5.445407 GCAGTTATAACAGAATCAAACGCGA 60.445 40.000 15.93 0.00 0.00 5.87
73 74 4.723862 GCAGTTATAACAGAATCAAACGCG 59.276 41.667 17.65 3.53 0.00 6.01
74 75 5.869350 AGCAGTTATAACAGAATCAAACGC 58.131 37.500 17.65 4.52 0.00 4.84
77 78 7.201644 GCAGCTAGCAGTTATAACAGAATCAAA 60.202 37.037 18.83 0.00 44.79 2.69
78 79 6.258727 GCAGCTAGCAGTTATAACAGAATCAA 59.741 38.462 18.83 0.00 44.79 2.57
79 80 5.755375 GCAGCTAGCAGTTATAACAGAATCA 59.245 40.000 18.83 0.00 44.79 2.57
80 81 6.221858 GCAGCTAGCAGTTATAACAGAATC 57.778 41.667 18.83 2.71 44.79 2.52
95 96 0.670162 CCTCTCTCTCAGCAGCTAGC 59.330 60.000 6.62 6.62 46.19 3.42
96 97 1.949525 GACCTCTCTCTCAGCAGCTAG 59.050 57.143 0.00 0.00 0.00 3.42
97 98 1.563879 AGACCTCTCTCTCAGCAGCTA 59.436 52.381 0.00 0.00 0.00 3.32
98 99 0.332632 AGACCTCTCTCTCAGCAGCT 59.667 55.000 0.00 0.00 0.00 4.24
100 101 4.037923 GGATAAAGACCTCTCTCTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
102 103 3.957497 TGGATAAAGACCTCTCTCTCAGC 59.043 47.826 0.00 0.00 0.00 4.26
103 104 5.200483 AGTGGATAAAGACCTCTCTCTCAG 58.800 45.833 0.00 0.00 0.00 3.35
104 105 5.199982 AGTGGATAAAGACCTCTCTCTCA 57.800 43.478 0.00 0.00 0.00 3.27
105 106 6.597562 TCTAGTGGATAAAGACCTCTCTCTC 58.402 44.000 0.00 0.00 33.98 3.20
106 107 6.584471 TCTAGTGGATAAAGACCTCTCTCT 57.416 41.667 0.00 0.00 33.98 3.10
107 108 5.240844 GCTCTAGTGGATAAAGACCTCTCTC 59.759 48.000 0.00 0.00 33.98 3.20
108 109 5.137551 GCTCTAGTGGATAAAGACCTCTCT 58.862 45.833 0.00 0.00 33.98 3.10
109 110 4.279922 GGCTCTAGTGGATAAAGACCTCTC 59.720 50.000 0.00 0.00 33.98 3.20
110 111 4.219919 GGCTCTAGTGGATAAAGACCTCT 58.780 47.826 0.00 0.00 35.75 3.69
111 112 3.322541 GGGCTCTAGTGGATAAAGACCTC 59.677 52.174 0.00 0.00 32.03 3.85
112 113 3.310193 GGGCTCTAGTGGATAAAGACCT 58.690 50.000 0.00 0.00 32.03 3.85
113 114 3.039011 TGGGCTCTAGTGGATAAAGACC 58.961 50.000 0.00 0.00 35.57 3.85
114 115 4.965200 ATGGGCTCTAGTGGATAAAGAC 57.035 45.455 0.00 0.00 0.00 3.01
115 116 7.178628 GTGTATATGGGCTCTAGTGGATAAAGA 59.821 40.741 0.00 0.00 0.00 2.52
117 118 6.212791 GGTGTATATGGGCTCTAGTGGATAAA 59.787 42.308 0.00 0.00 0.00 1.40
119 120 5.269991 GGTGTATATGGGCTCTAGTGGATA 58.730 45.833 0.00 0.00 0.00 2.59
120 121 4.097418 GGTGTATATGGGCTCTAGTGGAT 58.903 47.826 0.00 0.00 0.00 3.41
121 122 3.507411 GGTGTATATGGGCTCTAGTGGA 58.493 50.000 0.00 0.00 0.00 4.02
124 125 2.891580 CACGGTGTATATGGGCTCTAGT 59.108 50.000 0.00 0.00 0.00 2.57
126 127 2.889045 GTCACGGTGTATATGGGCTCTA 59.111 50.000 8.17 0.00 0.00 2.43
127 128 1.687123 GTCACGGTGTATATGGGCTCT 59.313 52.381 8.17 0.00 0.00 4.09
128 129 1.411246 TGTCACGGTGTATATGGGCTC 59.589 52.381 8.17 0.00 0.00 4.70
129 130 1.491668 TGTCACGGTGTATATGGGCT 58.508 50.000 8.17 0.00 0.00 5.19
130 131 2.543777 ATGTCACGGTGTATATGGGC 57.456 50.000 8.17 0.00 0.00 5.36
131 132 4.556233 CACTATGTCACGGTGTATATGGG 58.444 47.826 8.17 1.12 0.00 4.00
132 133 3.987868 GCACTATGTCACGGTGTATATGG 59.012 47.826 8.17 6.05 33.96 2.74
133 134 4.444388 GTGCACTATGTCACGGTGTATATG 59.556 45.833 10.32 9.33 33.96 1.78
136 137 2.496070 AGTGCACTATGTCACGGTGTAT 59.504 45.455 20.16 6.91 38.19 2.29
137 138 1.890489 AGTGCACTATGTCACGGTGTA 59.110 47.619 20.16 0.00 38.19 2.90
139 140 1.070821 CAGTGCACTATGTCACGGTG 58.929 55.000 21.20 0.56 38.19 4.94
140 141 0.670546 GCAGTGCACTATGTCACGGT 60.671 55.000 21.20 0.00 38.19 4.83
141 142 0.670239 TGCAGTGCACTATGTCACGG 60.670 55.000 21.20 5.56 38.19 4.94
142 143 0.717784 CTGCAGTGCACTATGTCACG 59.282 55.000 21.20 6.37 38.19 4.35
144 145 0.035176 TGCTGCAGTGCACTATGTCA 59.965 50.000 21.20 12.54 38.12 3.58
145 146 1.135859 GTTGCTGCAGTGCACTATGTC 60.136 52.381 21.20 10.00 43.20 3.06
146 147 0.877071 GTTGCTGCAGTGCACTATGT 59.123 50.000 21.20 0.00 43.20 2.29
148 149 0.320683 TCGTTGCTGCAGTGCACTAT 60.321 50.000 21.20 0.00 43.20 2.12
149 150 0.531753 TTCGTTGCTGCAGTGCACTA 60.532 50.000 21.20 3.71 43.20 2.74
150 151 1.779025 CTTCGTTGCTGCAGTGCACT 61.779 55.000 15.25 15.25 43.20 4.40
151 152 1.369689 CTTCGTTGCTGCAGTGCAC 60.370 57.895 15.37 9.40 43.20 4.57
152 153 1.375853 AACTTCGTTGCTGCAGTGCA 61.376 50.000 18.58 18.58 41.65 4.57
153 154 0.586319 TAACTTCGTTGCTGCAGTGC 59.414 50.000 16.64 8.58 0.00 4.40
154 155 1.195448 CCTAACTTCGTTGCTGCAGTG 59.805 52.381 16.64 3.33 0.00 3.66
156 157 1.512926 ACCTAACTTCGTTGCTGCAG 58.487 50.000 10.11 10.11 0.00 4.41
158 159 1.602377 ACAACCTAACTTCGTTGCTGC 59.398 47.619 0.00 0.00 42.51 5.25
159 160 3.805422 TGTACAACCTAACTTCGTTGCTG 59.195 43.478 0.00 0.00 42.51 4.41
160 161 4.062677 TGTACAACCTAACTTCGTTGCT 57.937 40.909 0.00 0.00 42.51 3.91
161 162 5.352643 AATGTACAACCTAACTTCGTTGC 57.647 39.130 0.00 0.00 42.51 4.17
162 163 5.176223 ACGAATGTACAACCTAACTTCGTTG 59.824 40.000 19.85 0.00 43.01 4.10
165 166 4.433805 GCACGAATGTACAACCTAACTTCG 60.434 45.833 18.82 18.82 39.71 3.79
166 167 4.433805 CGCACGAATGTACAACCTAACTTC 60.434 45.833 0.00 0.00 0.00 3.01
169 170 2.733026 ACGCACGAATGTACAACCTAAC 59.267 45.455 0.00 0.00 0.00 2.34
171 172 2.288334 ACACGCACGAATGTACAACCTA 60.288 45.455 0.00 0.00 0.00 3.08
172 173 1.144969 CACGCACGAATGTACAACCT 58.855 50.000 0.00 0.00 0.00 3.50
174 175 1.397945 CCACACGCACGAATGTACAAC 60.398 52.381 0.00 0.00 0.00 3.32
175 176 0.862490 CCACACGCACGAATGTACAA 59.138 50.000 0.00 0.00 0.00 2.41
177 178 0.863144 AACCACACGCACGAATGTAC 59.137 50.000 0.00 0.00 0.00 2.90
178 179 1.141645 GAACCACACGCACGAATGTA 58.858 50.000 0.00 0.00 0.00 2.29
180 181 1.154672 CGAACCACACGCACGAATG 60.155 57.895 0.00 0.00 0.00 2.67
181 182 3.240203 CGAACCACACGCACGAAT 58.760 55.556 0.00 0.00 0.00 3.34
188 189 2.657296 ACGACAGCGAACCACACG 60.657 61.111 0.00 0.00 41.64 4.49
189 190 2.594962 CCACGACAGCGAACCACAC 61.595 63.158 0.00 0.00 41.64 3.82
190 191 2.279851 CCACGACAGCGAACCACA 60.280 61.111 0.00 0.00 41.64 4.17
191 192 3.041940 CCCACGACAGCGAACCAC 61.042 66.667 0.00 0.00 41.64 4.16
192 193 4.980805 GCCCACGACAGCGAACCA 62.981 66.667 0.00 0.00 41.64 3.67
193 194 4.681978 AGCCCACGACAGCGAACC 62.682 66.667 0.00 0.00 41.64 3.62
194 195 3.414700 CAGCCCACGACAGCGAAC 61.415 66.667 0.00 0.00 41.64 3.95
204 205 3.646715 TACCAGCCACCAGCCCAC 61.647 66.667 0.00 0.00 45.47 4.61
205 206 3.646715 GTACCAGCCACCAGCCCA 61.647 66.667 0.00 0.00 45.47 5.36
207 208 0.611896 AAATGTACCAGCCACCAGCC 60.612 55.000 0.00 0.00 45.47 4.85
208 209 2.017049 CTAAATGTACCAGCCACCAGC 58.983 52.381 0.00 0.00 44.25 4.85
209 210 3.009723 CACTAAATGTACCAGCCACCAG 58.990 50.000 0.00 0.00 0.00 4.00
210 211 2.878117 GCACTAAATGTACCAGCCACCA 60.878 50.000 0.00 0.00 0.00 4.17
211 212 1.743394 GCACTAAATGTACCAGCCACC 59.257 52.381 0.00 0.00 0.00 4.61
212 213 1.396996 CGCACTAAATGTACCAGCCAC 59.603 52.381 0.00 0.00 0.00 5.01
213 214 1.002659 ACGCACTAAATGTACCAGCCA 59.997 47.619 0.00 0.00 0.00 4.75
214 215 1.396996 CACGCACTAAATGTACCAGCC 59.603 52.381 0.00 0.00 0.00 4.85
215 216 1.202031 GCACGCACTAAATGTACCAGC 60.202 52.381 0.00 0.00 0.00 4.85
216 217 2.073056 TGCACGCACTAAATGTACCAG 58.927 47.619 0.00 0.00 0.00 4.00
217 218 2.171341 TGCACGCACTAAATGTACCA 57.829 45.000 0.00 0.00 0.00 3.25
218 219 2.791158 GCATGCACGCACTAAATGTACC 60.791 50.000 14.21 0.00 0.00 3.34
219 220 2.440501 GCATGCACGCACTAAATGTAC 58.559 47.619 14.21 0.00 0.00 2.90
222 223 2.558004 CGCATGCACGCACTAAATG 58.442 52.632 19.57 0.00 0.00 2.32
235 236 3.444717 GATCCACACGCAGCGCATG 62.445 63.158 16.61 13.40 0.00 4.06
236 237 3.197790 GATCCACACGCAGCGCAT 61.198 61.111 16.61 0.00 0.00 4.73
244 245 2.434884 AAGCCAGCGATCCACACG 60.435 61.111 0.00 0.00 0.00 4.49
245 246 2.456119 CGAAGCCAGCGATCCACAC 61.456 63.158 0.00 0.00 0.00 3.82
246 247 2.125552 CGAAGCCAGCGATCCACA 60.126 61.111 0.00 0.00 0.00 4.17
247 248 2.892425 CCGAAGCCAGCGATCCAC 60.892 66.667 0.00 0.00 0.00 4.02
260 261 0.836400 AGTCTGAAAGGAGGCCCGAA 60.836 55.000 0.00 0.00 37.58 4.30
261 262 0.040646 TAGTCTGAAAGGAGGCCCGA 59.959 55.000 0.00 0.00 37.58 5.14
262 263 0.461961 CTAGTCTGAAAGGAGGCCCG 59.538 60.000 0.00 0.00 37.58 6.13
263 264 0.179234 GCTAGTCTGAAAGGAGGCCC 59.821 60.000 0.00 0.00 0.00 5.80
264 265 0.179234 GGCTAGTCTGAAAGGAGGCC 59.821 60.000 0.00 0.00 31.33 5.19
265 266 0.905357 TGGCTAGTCTGAAAGGAGGC 59.095 55.000 0.00 0.00 35.66 4.70
266 267 1.902508 TGTGGCTAGTCTGAAAGGAGG 59.097 52.381 0.00 0.00 0.00 4.30
268 269 3.307691 CCATTGTGGCTAGTCTGAAAGGA 60.308 47.826 0.00 0.00 0.00 3.36
269 270 3.012518 CCATTGTGGCTAGTCTGAAAGG 58.987 50.000 0.00 0.00 0.00 3.11
270 271 3.012518 CCCATTGTGGCTAGTCTGAAAG 58.987 50.000 0.00 0.00 35.79 2.62
271 272 2.642311 TCCCATTGTGGCTAGTCTGAAA 59.358 45.455 0.00 0.00 35.79 2.69
274 275 2.026822 ACTTCCCATTGTGGCTAGTCTG 60.027 50.000 0.00 0.00 35.79 3.51
276 277 2.789409 ACTTCCCATTGTGGCTAGTC 57.211 50.000 0.00 0.00 35.79 2.59
277 278 3.329520 TGTTACTTCCCATTGTGGCTAGT 59.670 43.478 0.00 6.51 35.79 2.57
278 279 3.950397 TGTTACTTCCCATTGTGGCTAG 58.050 45.455 0.00 0.00 35.79 3.42
279 280 4.584638 ATGTTACTTCCCATTGTGGCTA 57.415 40.909 0.00 0.00 35.79 3.93
281 282 6.062095 AGTATATGTTACTTCCCATTGTGGC 58.938 40.000 0.00 0.00 35.79 5.01
282 283 8.429641 ACTAGTATATGTTACTTCCCATTGTGG 58.570 37.037 0.00 0.00 37.25 4.17
340 341 9.132923 CTCTTATGTTACTACCCAGTATGAAGA 57.867 37.037 0.00 0.00 39.69 2.87
343 344 6.781014 CCCTCTTATGTTACTACCCAGTATGA 59.219 42.308 0.00 0.00 39.69 2.15
348 349 4.443034 GCACCCTCTTATGTTACTACCCAG 60.443 50.000 0.00 0.00 0.00 4.45
356 357 4.141482 GGATCCAAGCACCCTCTTATGTTA 60.141 45.833 6.95 0.00 0.00 2.41
432 438 2.334977 TCTTTAGTCAGGGGTGCTTGA 58.665 47.619 0.00 0.00 0.00 3.02
453 459 3.018149 CCTCAAGACTAGTCGTAGCCTT 58.982 50.000 17.07 2.19 34.09 4.35
520 526 5.537188 CGGAATTAAATGAGGAGAGAGAGG 58.463 45.833 0.00 0.00 0.00 3.69
546 552 3.469629 CAGAACTCGCATGTGTTAAACG 58.530 45.455 6.09 0.00 32.29 3.60
547 553 3.496884 TCCAGAACTCGCATGTGTTAAAC 59.503 43.478 6.09 0.00 32.29 2.01
548 554 3.734463 TCCAGAACTCGCATGTGTTAAA 58.266 40.909 6.09 0.00 32.29 1.52
551 557 2.479566 ATCCAGAACTCGCATGTGTT 57.520 45.000 6.09 3.50 34.68 3.32
552 558 2.079158 CAATCCAGAACTCGCATGTGT 58.921 47.619 6.09 0.00 0.00 3.72
553 559 2.349590 TCAATCCAGAACTCGCATGTG 58.650 47.619 0.00 0.00 0.00 3.21
554 560 2.234661 TCTCAATCCAGAACTCGCATGT 59.765 45.455 0.00 0.00 0.00 3.21
555 561 2.864946 CTCTCAATCCAGAACTCGCATG 59.135 50.000 0.00 0.00 0.00 4.06
556 562 2.499289 ACTCTCAATCCAGAACTCGCAT 59.501 45.455 0.00 0.00 0.00 4.73
557 563 1.895798 ACTCTCAATCCAGAACTCGCA 59.104 47.619 0.00 0.00 0.00 5.10
558 564 2.663826 ACTCTCAATCCAGAACTCGC 57.336 50.000 0.00 0.00 0.00 5.03
559 565 3.681897 CCAAACTCTCAATCCAGAACTCG 59.318 47.826 0.00 0.00 0.00 4.18
560 566 4.899502 TCCAAACTCTCAATCCAGAACTC 58.100 43.478 0.00 0.00 0.00 3.01
574 580 7.807977 TGAGCATTTATTATCCTCCAAACTC 57.192 36.000 0.00 0.00 0.00 3.01
647 654 6.396450 AGTAGTGGTACTAAAACTTGCTAGC 58.604 40.000 8.10 8.10 37.76 3.42
676 683 6.316890 GCTTGGATACGTTTTAGTCCCATAAA 59.683 38.462 0.00 0.00 42.51 1.40
678 685 5.104859 TGCTTGGATACGTTTTAGTCCCATA 60.105 40.000 0.00 0.00 42.51 2.74
703 710 4.960938 TGCATGTTAGCATACTTAGAGGG 58.039 43.478 0.00 0.00 40.11 4.30
704 711 6.512415 GCTTTGCATGTTAGCATACTTAGAGG 60.512 42.308 9.87 0.00 45.19 3.69
709 716 5.183713 TGAAGCTTTGCATGTTAGCATACTT 59.816 36.000 0.00 0.00 45.19 2.24
713 720 4.730949 ATGAAGCTTTGCATGTTAGCAT 57.269 36.364 0.00 6.10 45.19 3.79
716 723 9.241317 CCTAATAAATGAAGCTTTGCATGTTAG 57.759 33.333 0.00 9.77 0.00 2.34
718 725 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
719 726 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
752 759 5.010314 ACATCACATGTCCCAATGCAATATC 59.990 40.000 0.00 0.00 39.92 1.63
756 763 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
759 766 8.559536 GTTACTATAACATCACATGTCCCAATG 58.440 37.037 0.00 0.45 44.07 2.82
760 767 8.494433 AGTTACTATAACATCACATGTCCCAAT 58.506 33.333 0.00 0.00 44.07 3.16
787 794 7.889600 AGAGGTAGTTTCAGTAACTTAGCTACT 59.110 37.037 0.00 0.00 44.73 2.57
788 795 8.054152 AGAGGTAGTTTCAGTAACTTAGCTAC 57.946 38.462 0.00 0.00 44.73 3.58
789 796 8.108364 AGAGAGGTAGTTTCAGTAACTTAGCTA 58.892 37.037 0.00 0.00 44.73 3.32
790 797 6.949463 AGAGAGGTAGTTTCAGTAACTTAGCT 59.051 38.462 0.00 0.00 44.73 3.32
791 798 7.160547 AGAGAGGTAGTTTCAGTAACTTAGC 57.839 40.000 0.00 0.00 44.73 3.09
792 799 7.612633 AGGAGAGAGGTAGTTTCAGTAACTTAG 59.387 40.741 0.00 0.00 44.73 2.18
793 800 7.468496 AGGAGAGAGGTAGTTTCAGTAACTTA 58.532 38.462 0.00 0.00 44.73 2.24
796 803 5.711036 TGAGGAGAGAGGTAGTTTCAGTAAC 59.289 44.000 0.00 0.00 36.99 2.50
797 804 5.888901 TGAGGAGAGAGGTAGTTTCAGTAA 58.111 41.667 0.00 0.00 0.00 2.24
798 805 5.516059 TGAGGAGAGAGGTAGTTTCAGTA 57.484 43.478 0.00 0.00 0.00 2.74
801 808 6.954684 AGTTAATGAGGAGAGAGGTAGTTTCA 59.045 38.462 0.00 0.00 0.00 2.69
804 811 6.494952 TGAGTTAATGAGGAGAGAGGTAGTT 58.505 40.000 0.00 0.00 0.00 2.24
805 812 6.080969 TGAGTTAATGAGGAGAGAGGTAGT 57.919 41.667 0.00 0.00 0.00 2.73
806 813 7.432869 CAATGAGTTAATGAGGAGAGAGGTAG 58.567 42.308 0.00 0.00 0.00 3.18
807 814 6.183360 GCAATGAGTTAATGAGGAGAGAGGTA 60.183 42.308 0.00 0.00 0.00 3.08
817 824 5.727791 GCTTACGTGGCAATGAGTTAATGAG 60.728 44.000 0.00 0.00 0.00 2.90
827 834 2.634982 AATGTGCTTACGTGGCAATG 57.365 45.000 17.19 0.00 41.54 2.82
828 835 2.945278 CAAATGTGCTTACGTGGCAAT 58.055 42.857 17.19 11.29 41.54 3.56
829 836 2.414058 CAAATGTGCTTACGTGGCAA 57.586 45.000 17.19 9.86 41.54 4.52
841 848 2.096069 CGAGTCCAACTCAGCAAATGTG 60.096 50.000 7.78 0.00 45.30 3.21
843 850 2.416747 TCGAGTCCAACTCAGCAAATG 58.583 47.619 7.78 0.00 45.30 2.32
845 852 2.224281 ACATCGAGTCCAACTCAGCAAA 60.224 45.455 7.78 0.00 45.30 3.68
849 856 4.169508 CAGTAACATCGAGTCCAACTCAG 58.830 47.826 7.78 1.37 45.30 3.35
850 857 3.572682 ACAGTAACATCGAGTCCAACTCA 59.427 43.478 7.78 0.00 45.30 3.41
851 858 4.175787 ACAGTAACATCGAGTCCAACTC 57.824 45.455 0.00 0.00 41.71 3.01
855 862 4.038763 ACTTCAACAGTAACATCGAGTCCA 59.961 41.667 0.00 0.00 31.97 4.02
858 865 6.746120 AGTAACTTCAACAGTAACATCGAGT 58.254 36.000 0.00 0.00 32.94 4.18
859 866 6.308282 GGAGTAACTTCAACAGTAACATCGAG 59.692 42.308 0.00 0.00 32.94 4.04
860 867 6.154445 GGAGTAACTTCAACAGTAACATCGA 58.846 40.000 0.00 0.00 32.94 3.59
861 868 5.347907 GGGAGTAACTTCAACAGTAACATCG 59.652 44.000 0.00 0.00 32.94 3.84
862 869 6.147328 GTGGGAGTAACTTCAACAGTAACATC 59.853 42.308 0.00 0.00 32.94 3.06
863 870 5.995897 GTGGGAGTAACTTCAACAGTAACAT 59.004 40.000 0.00 0.00 32.94 2.71
864 871 5.129815 AGTGGGAGTAACTTCAACAGTAACA 59.870 40.000 0.00 0.00 32.94 2.41
867 874 6.070995 CCATAGTGGGAGTAACTTCAACAGTA 60.071 42.308 0.00 0.00 31.63 2.74
870 877 4.564821 GCCATAGTGGGAGTAACTTCAACA 60.565 45.833 0.00 0.00 38.19 3.33
871 878 3.939592 GCCATAGTGGGAGTAACTTCAAC 59.060 47.826 0.00 0.00 38.19 3.18
872 879 3.844211 AGCCATAGTGGGAGTAACTTCAA 59.156 43.478 0.00 0.00 38.19 2.69
873 880 3.450904 AGCCATAGTGGGAGTAACTTCA 58.549 45.455 0.00 0.00 38.19 3.02
875 882 4.621769 ACTAGCCATAGTGGGAGTAACTT 58.378 43.478 0.00 0.00 40.84 2.66
876 883 4.079096 AGACTAGCCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 42.46 2.24
877 884 4.216708 AGACTAGCCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 42.46 2.50
879 886 3.462205 TGAGACTAGCCATAGTGGGAGTA 59.538 47.826 0.00 0.00 42.46 2.59
880 887 2.245028 TGAGACTAGCCATAGTGGGAGT 59.755 50.000 0.00 0.00 42.46 3.85
882 889 2.245028 AGTGAGACTAGCCATAGTGGGA 59.755 50.000 0.00 0.00 42.46 4.37
883 890 2.363680 CAGTGAGACTAGCCATAGTGGG 59.636 54.545 0.00 0.00 42.46 4.61
884 891 2.363680 CCAGTGAGACTAGCCATAGTGG 59.636 54.545 0.00 0.00 42.46 4.00
885 892 2.363680 CCCAGTGAGACTAGCCATAGTG 59.636 54.545 0.00 0.00 42.46 2.74
886 893 2.023888 ACCCAGTGAGACTAGCCATAGT 60.024 50.000 0.00 0.00 45.16 2.12
888 895 2.766263 CAACCCAGTGAGACTAGCCATA 59.234 50.000 0.00 0.00 0.00 2.74
889 896 1.556911 CAACCCAGTGAGACTAGCCAT 59.443 52.381 0.00 0.00 0.00 4.40
890 897 0.976641 CAACCCAGTGAGACTAGCCA 59.023 55.000 0.00 0.00 0.00 4.75
891 898 0.977395 ACAACCCAGTGAGACTAGCC 59.023 55.000 0.00 0.00 0.00 3.93
893 900 3.870633 GGTACAACCCAGTGAGACTAG 57.129 52.381 0.00 0.00 30.04 2.57
905 912 2.929477 TGGACCCGGGGTACAACC 60.929 66.667 29.22 20.60 44.57 3.77
908 915 0.778720 ATTTTTGGACCCGGGGTACA 59.221 50.000 27.75 27.75 46.08 2.90
909 916 2.804986 TATTTTTGGACCCGGGGTAC 57.195 50.000 27.92 22.38 35.25 3.34
910 917 3.528491 AGAATATTTTTGGACCCGGGGTA 59.472 43.478 27.92 7.58 35.25 3.69
911 918 2.313643 AGAATATTTTTGGACCCGGGGT 59.686 45.455 27.92 21.21 39.44 4.95
912 919 3.026707 AGAATATTTTTGGACCCGGGG 57.973 47.619 27.92 12.73 0.00 5.73
913 920 6.724893 ATAAAGAATATTTTTGGACCCGGG 57.275 37.500 22.25 22.25 0.00 5.73
914 921 8.228035 TGTATAAAGAATATTTTTGGACCCGG 57.772 34.615 0.00 0.00 0.00 5.73
929 936 8.227791 GCGTGAGAATTTTCACTGTATAAAGAA 58.772 33.333 22.49 0.00 44.13 2.52
930 937 7.148474 GGCGTGAGAATTTTCACTGTATAAAGA 60.148 37.037 22.49 0.00 44.13 2.52
931 938 6.961554 GGCGTGAGAATTTTCACTGTATAAAG 59.038 38.462 22.49 9.01 44.13 1.85
934 941 4.873827 GGGCGTGAGAATTTTCACTGTATA 59.126 41.667 22.49 0.00 44.13 1.47
936 943 3.071479 GGGCGTGAGAATTTTCACTGTA 58.929 45.455 22.49 0.00 44.13 2.74
937 944 1.880027 GGGCGTGAGAATTTTCACTGT 59.120 47.619 22.49 0.00 44.13 3.55
939 946 1.534729 GGGGCGTGAGAATTTTCACT 58.465 50.000 22.49 0.00 44.13 3.41
942 949 1.654023 CCCGGGGCGTGAGAATTTTC 61.654 60.000 14.71 0.00 0.00 2.29
943 950 1.677633 CCCGGGGCGTGAGAATTTT 60.678 57.895 14.71 0.00 0.00 1.82
944 951 2.045340 CCCGGGGCGTGAGAATTT 60.045 61.111 14.71 0.00 0.00 1.82
945 952 4.796495 GCCCGGGGCGTGAGAATT 62.796 66.667 24.63 0.00 39.62 2.17
962 969 4.760220 AGGTACCCAGGGCCCAGG 62.760 72.222 26.44 26.44 0.00 4.45
963 970 3.411517 CAGGTACCCAGGGCCCAG 61.412 72.222 27.56 17.69 0.00 4.45
989 996 1.910772 CAGAGGGATAGGGGCGGAG 60.911 68.421 0.00 0.00 0.00 4.63
991 998 2.925170 CCAGAGGGATAGGGGCGG 60.925 72.222 0.00 0.00 35.59 6.13
1044 3258 9.997482 GTTATTTTATTTCGGCACAGAAGATTA 57.003 29.630 0.00 0.00 0.00 1.75
1048 3262 7.526608 TCTGTTATTTTATTTCGGCACAGAAG 58.473 34.615 0.00 0.00 37.15 2.85
1054 3268 5.797934 CGCTTTCTGTTATTTTATTTCGGCA 59.202 36.000 0.00 0.00 0.00 5.69
1057 3271 7.060633 AGCAACGCTTTCTGTTATTTTATTTCG 59.939 33.333 0.00 0.00 33.89 3.46
1062 3276 5.912396 CACAGCAACGCTTTCTGTTATTTTA 59.088 36.000 5.65 0.00 38.85 1.52
1067 3281 1.002900 GCACAGCAACGCTTTCTGTTA 60.003 47.619 5.65 0.00 38.85 2.41
1090 3304 1.068954 GCTCCCGCTGAGAAAAAGTTG 60.069 52.381 4.46 0.00 44.42 3.16
1168 3390 0.247814 CGTTGATCGAAGCCATGCAC 60.248 55.000 0.00 0.00 42.86 4.57
1202 3424 3.186817 CCGTGTTTAATTACTTCGCCACA 59.813 43.478 0.00 0.00 0.00 4.17
1203 3425 3.187022 ACCGTGTTTAATTACTTCGCCAC 59.813 43.478 0.00 0.00 0.00 5.01
1204 3426 3.186817 CACCGTGTTTAATTACTTCGCCA 59.813 43.478 0.00 0.00 0.00 5.69
1205 3427 3.425227 CCACCGTGTTTAATTACTTCGCC 60.425 47.826 0.00 0.00 0.00 5.54
1206 3428 3.739494 CCACCGTGTTTAATTACTTCGC 58.261 45.455 0.00 0.00 0.00 4.70
1207 3429 3.722665 CGCCACCGTGTTTAATTACTTCG 60.723 47.826 0.00 0.00 0.00 3.79
1208 3430 3.432933 TCGCCACCGTGTTTAATTACTTC 59.567 43.478 0.00 0.00 35.54 3.01
1209 3431 3.401182 TCGCCACCGTGTTTAATTACTT 58.599 40.909 0.00 0.00 35.54 2.24
1210 3432 3.042871 TCGCCACCGTGTTTAATTACT 57.957 42.857 0.00 0.00 35.54 2.24
1257 3479 3.554129 CGGAAGTGAATGTGTGTAGGTGA 60.554 47.826 0.00 0.00 0.00 4.02
1348 3580 1.362406 GAAGCAGCCGGTGAAGCTAC 61.362 60.000 1.90 0.00 38.95 3.58
1351 3583 2.260869 TTGAAGCAGCCGGTGAAGC 61.261 57.895 1.90 2.01 0.00 3.86
1407 3660 0.249699 TTATATGCTCACGGGCGTGG 60.250 55.000 0.00 0.00 45.43 4.94
1413 3666 3.792401 TGTGGTTCTTATATGCTCACGG 58.208 45.455 0.00 0.00 0.00 4.94
1420 3673 4.130118 GCAGGTCCTGTGGTTCTTATATG 58.870 47.826 20.24 0.00 33.43 1.78
1435 3689 2.413142 GCTGATTGCAGGCAGGTCC 61.413 63.158 16.56 0.80 42.53 4.46
1446 3700 0.465097 AGGGCGAGAATGGCTGATTG 60.465 55.000 0.00 0.00 40.84 2.67
1447 3701 0.179034 GAGGGCGAGAATGGCTGATT 60.179 55.000 0.00 0.00 40.84 2.57
1451 3705 2.688666 TGGAGGGCGAGAATGGCT 60.689 61.111 0.00 0.00 40.84 4.75
1461 3715 1.255667 TTCACGGTAGACTGGAGGGC 61.256 60.000 0.00 0.00 0.00 5.19
1462 3716 1.263356 TTTCACGGTAGACTGGAGGG 58.737 55.000 0.00 0.00 0.00 4.30
1469 3723 0.796927 GCCAGCTTTTCACGGTAGAC 59.203 55.000 0.00 0.00 0.00 2.59
1593 3886 3.025176 GAGTAGCCGTCGATGCGC 61.025 66.667 0.00 0.00 0.00 6.09
1623 3916 3.803082 CATGTGCCGTTGCCGAGG 61.803 66.667 0.00 0.00 36.33 4.63
1727 4020 2.172679 GACGGAGGAAGAGGGATATCC 58.827 57.143 13.87 13.87 0.00 2.59
1735 4028 0.891373 TGCTCAAGACGGAGGAAGAG 59.109 55.000 0.00 0.00 35.41 2.85
1743 4036 3.566322 AGCTAGTAGTATGCTCAAGACGG 59.434 47.826 0.00 0.00 30.41 4.79
1752 4045 4.811557 CCCTCAAAACAGCTAGTAGTATGC 59.188 45.833 0.00 0.00 0.00 3.14
1755 4048 5.081728 TCACCCTCAAAACAGCTAGTAGTA 58.918 41.667 0.00 0.00 0.00 1.82
1762 4055 2.689983 CAACTTCACCCTCAAAACAGCT 59.310 45.455 0.00 0.00 0.00 4.24
1763 4056 2.687935 TCAACTTCACCCTCAAAACAGC 59.312 45.455 0.00 0.00 0.00 4.40
1764 4057 4.734695 GCTTCAACTTCACCCTCAAAACAG 60.735 45.833 0.00 0.00 0.00 3.16
1765 4058 3.130340 GCTTCAACTTCACCCTCAAAACA 59.870 43.478 0.00 0.00 0.00 2.83
1768 4061 2.306847 GGCTTCAACTTCACCCTCAAA 58.693 47.619 0.00 0.00 0.00 2.69
1770 4063 0.843309 TGGCTTCAACTTCACCCTCA 59.157 50.000 0.00 0.00 0.00 3.86
1771 4064 1.882623 CTTGGCTTCAACTTCACCCTC 59.117 52.381 0.00 0.00 0.00 4.30
1772 4065 1.215423 ACTTGGCTTCAACTTCACCCT 59.785 47.619 0.00 0.00 0.00 4.34
1783 4076 5.107337 GCAAGCTAATTTTGAACTTGGCTTC 60.107 40.000 12.26 6.55 44.26 3.86
1791 4084 4.237724 GGTCCAGCAAGCTAATTTTGAAC 58.762 43.478 0.00 0.00 0.00 3.18
1796 4089 2.041620 TCCTGGTCCAGCAAGCTAATTT 59.958 45.455 13.99 0.00 0.00 1.82
1809 4102 3.015753 GGGTTCCCCTCCTGGTCC 61.016 72.222 0.00 0.00 41.34 4.46
1855 4148 2.357034 GTGGGAGAAAGTGCGCGA 60.357 61.111 12.10 0.00 0.00 5.87
1908 4201 1.160329 GGTCGAAATGCCGGATGAGG 61.160 60.000 5.05 0.00 0.00 3.86
1941 4234 3.870633 AAGACATCGTCCTTCAGGTAC 57.129 47.619 0.00 0.00 36.34 3.34
1962 4255 0.733150 CGACATCGCACCTGAGACTA 59.267 55.000 0.00 0.00 0.00 2.59
1988 4281 2.811431 CTGGTGACGATTTTGCTTACCA 59.189 45.455 0.00 0.00 35.61 3.25
1995 4288 0.958091 TTGCCCTGGTGACGATTTTG 59.042 50.000 0.00 0.00 0.00 2.44
2013 4306 0.538746 AAACTGCCGAAACCGGGATT 60.539 50.000 6.32 0.00 46.28 3.01
2129 4454 9.802039 AAGTAATAGTAGTAGCTAGCAGAAGAT 57.198 33.333 18.83 0.98 0.00 2.40
2131 4456 9.280174 AGAAGTAATAGTAGTAGCTAGCAGAAG 57.720 37.037 18.83 0.00 0.00 2.85
2132 4457 9.058174 CAGAAGTAATAGTAGTAGCTAGCAGAA 57.942 37.037 18.83 0.00 0.00 3.02
2134 4459 8.385898 ACAGAAGTAATAGTAGTAGCTAGCAG 57.614 38.462 18.83 0.00 0.00 4.24
2135 4460 8.749026 AACAGAAGTAATAGTAGTAGCTAGCA 57.251 34.615 18.83 0.00 0.00 3.49
2136 4461 9.667989 GAAACAGAAGTAATAGTAGTAGCTAGC 57.332 37.037 6.62 6.62 0.00 3.42
2139 4464 8.192110 GCTGAAACAGAAGTAATAGTAGTAGCT 58.808 37.037 2.81 0.00 32.44 3.32
2140 4465 7.166142 CGCTGAAACAGAAGTAATAGTAGTAGC 59.834 40.741 2.81 0.00 32.44 3.58
2147 4472 4.504858 ACCCGCTGAAACAGAAGTAATAG 58.495 43.478 2.81 0.00 32.44 1.73
2199 4533 2.104111 ACAGACTCGATGACCAAACCAA 59.896 45.455 0.00 0.00 0.00 3.67
2200 4534 1.691976 ACAGACTCGATGACCAAACCA 59.308 47.619 0.00 0.00 0.00 3.67
2223 4559 7.719778 TCATCTTATCAGTTTGATGATTCCG 57.280 36.000 1.94 0.00 39.91 4.30
2233 4569 8.877779 CGACTCAGAAATTCATCTTATCAGTTT 58.122 33.333 0.00 0.00 0.00 2.66
2238 4574 7.305705 CGACACGACTCAGAAATTCATCTTATC 60.306 40.741 0.00 0.00 0.00 1.75
2276 4612 5.950883 TCAGTTTACAGACTGGAATACGAG 58.049 41.667 7.51 5.11 45.54 4.18
2343 4697 3.060473 GCATAGGCGATTACAAAGACGAC 60.060 47.826 0.00 0.00 0.00 4.34
2345 4699 2.863740 TGCATAGGCGATTACAAAGACG 59.136 45.455 0.00 0.00 45.35 4.18
2382 4736 5.418310 ACACAAAGTTGAACTACGATTGG 57.582 39.130 10.98 4.37 0.00 3.16
2386 4740 5.521010 CCAGTAACACAAAGTTGAACTACGA 59.479 40.000 0.00 0.00 41.50 3.43
2407 4761 5.699097 GACTAGCTAGTCCAATACTCCAG 57.301 47.826 34.56 5.77 45.33 3.86
2429 4783 2.450160 GTGAAACGCACAGGAAAACAG 58.550 47.619 0.00 0.00 46.91 3.16
2454 4808 3.671702 GCAATCTGCCAAAGCTTGAGTAC 60.672 47.826 0.00 0.00 37.42 2.73
2455 4809 2.489329 GCAATCTGCCAAAGCTTGAGTA 59.511 45.455 0.00 0.00 37.42 2.59
2534 4889 0.900421 ATGCAGTGCTGAGAGTGCTA 59.100 50.000 17.60 0.00 42.00 3.49
2563 4925 2.109774 AGGTCAGAGGCAGATGAAGAG 58.890 52.381 0.00 0.00 0.00 2.85
2647 5011 8.891720 AGACAAATTTCAGAAATGATAGCTCTC 58.108 33.333 9.24 0.00 0.00 3.20
2672 5036 7.592938 TGCTTATGGTTCAGTCAACATTTTAG 58.407 34.615 0.00 0.00 36.61 1.85
2768 5133 7.809806 GTGCGTAAGTTAACCCTCGTATATATT 59.190 37.037 0.88 0.00 41.68 1.28
2776 5141 2.358939 AGTGCGTAAGTTAACCCTCG 57.641 50.000 0.88 5.84 41.68 4.63
2970 5350 9.649167 CAGATATATATGCTCAATTCACTGTCA 57.351 33.333 0.00 0.00 0.00 3.58
2973 5353 9.662947 TTCCAGATATATATGCTCAATTCACTG 57.337 33.333 0.00 0.00 0.00 3.66
3136 5565 3.430929 GGAGAGAGGCGAGCATTTCTTTA 60.431 47.826 4.38 0.00 0.00 1.85
3137 5566 2.626840 GAGAGAGGCGAGCATTTCTTT 58.373 47.619 4.38 0.00 0.00 2.52
3140 5569 0.176680 TGGAGAGAGGCGAGCATTTC 59.823 55.000 0.00 0.00 0.00 2.17
3173 5602 1.531423 CATGACTTGCCAAGCAGAGT 58.469 50.000 3.88 1.36 40.61 3.24
3185 5614 1.675641 GCCTCGTTGCCCATGACTT 60.676 57.895 0.00 0.00 0.00 3.01
3209 5647 5.687166 AAGGTTGAGGTCGATTATTGGTA 57.313 39.130 0.00 0.00 0.00 3.25
3237 5675 0.990374 AGATTCTGGCCTTGTGCTCT 59.010 50.000 3.32 0.00 40.92 4.09
3240 5678 1.065126 ACCTAGATTCTGGCCTTGTGC 60.065 52.381 3.32 0.00 40.16 4.57
3269 5713 4.818546 CGGATATGCTTGGACTGATTCTTT 59.181 41.667 0.00 0.00 0.00 2.52
3277 5721 1.418334 AGCTCGGATATGCTTGGACT 58.582 50.000 0.00 0.00 35.86 3.85
3291 5735 2.744202 ACCTTGTTGAAAGCATAGCTCG 59.256 45.455 0.00 0.00 38.25 5.03
3295 5739 5.856126 TCGTTACCTTGTTGAAAGCATAG 57.144 39.130 0.00 0.00 0.00 2.23
3296 5740 5.703592 ACATCGTTACCTTGTTGAAAGCATA 59.296 36.000 0.00 0.00 0.00 3.14
3301 5745 7.789273 TTCTTACATCGTTACCTTGTTGAAA 57.211 32.000 0.00 0.00 0.00 2.69
3318 5762 5.688823 CAGCGATGACAATGTTTTCTTACA 58.311 37.500 0.00 0.00 0.00 2.41
3323 5767 1.906966 CGCAGCGATGACAATGTTTTC 59.093 47.619 9.98 0.00 0.00 2.29
3327 5771 1.939974 ATACGCAGCGATGACAATGT 58.060 45.000 24.65 0.00 0.00 2.71
3331 5775 1.135333 TGGTTATACGCAGCGATGACA 59.865 47.619 24.65 9.56 0.00 3.58
3333 5777 1.407618 AGTGGTTATACGCAGCGATGA 59.592 47.619 24.65 6.53 0.00 2.92
3337 5781 1.200483 CTGAGTGGTTATACGCAGCG 58.800 55.000 14.82 14.82 40.60 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.