Multiple sequence alignment - TraesCS7B01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G349500 chr7B 100.000 4933 0 0 1 4933 606352537 606357469 0.000000e+00 9110.0
1 TraesCS7B01G349500 chr7B 92.308 39 1 2 4214 4250 606362939 606362977 2.000000e-03 54.7
2 TraesCS7B01G349500 chr5B 99.001 2103 16 1 1 2103 248658652 248656555 0.000000e+00 3762.0
3 TraesCS7B01G349500 chr5B 87.703 740 62 18 2831 3555 239331930 239331205 0.000000e+00 835.0
4 TraesCS7B01G349500 chr5B 95.802 524 7 4 4425 4933 248655298 248654775 0.000000e+00 832.0
5 TraesCS7B01G349500 chr3A 99.221 2055 15 1 1 2055 585751493 585753546 0.000000e+00 3705.0
6 TraesCS7B01G349500 chr3A 89.096 1394 114 20 220 1610 205320427 205319069 0.000000e+00 1698.0
7 TraesCS7B01G349500 chr3A 89.380 1177 77 23 895 2055 306861821 306860677 0.000000e+00 1437.0
8 TraesCS7B01G349500 chr3A 91.657 851 49 9 2 836 306862661 306861817 0.000000e+00 1158.0
9 TraesCS7B01G349500 chr3A 95.782 403 17 0 3839 4241 12569606 12569204 0.000000e+00 651.0
10 TraesCS7B01G349500 chr3A 89.270 466 31 11 1647 2101 205319062 205318605 2.580000e-157 566.0
11 TraesCS7B01G349500 chr3A 88.034 234 24 4 4250 4481 419941433 419941202 1.750000e-69 274.0
12 TraesCS7B01G349500 chr2A 97.704 2134 39 8 2462 4592 191913995 191916121 0.000000e+00 3661.0
13 TraesCS7B01G349500 chr2A 94.827 1643 45 14 2465 4083 62219173 62217547 0.000000e+00 2527.0
14 TraesCS7B01G349500 chr2A 91.580 772 62 2 583 1351 743441670 743442441 0.000000e+00 1062.0
15 TraesCS7B01G349500 chr2A 98.511 470 7 0 4464 4933 601342629 601342160 0.000000e+00 830.0
16 TraesCS7B01G349500 chr2A 95.382 498 19 3 4437 4933 191902413 191902907 0.000000e+00 789.0
17 TraesCS7B01G349500 chr2A 97.911 383 7 1 4437 4818 191901870 191902252 0.000000e+00 662.0
18 TraesCS7B01G349500 chr2A 94.660 412 22 0 3839 4250 424543090 424542679 1.500000e-179 640.0
19 TraesCS7B01G349500 chr2A 92.308 312 15 2 2025 2335 191912824 191913127 7.580000e-118 435.0
20 TraesCS7B01G349500 chr2A 91.440 257 18 4 1800 2055 743442945 743443198 2.830000e-92 350.0
21 TraesCS7B01G349500 chr2A 99.265 136 1 0 2340 2475 191913554 191913689 3.810000e-61 246.0
22 TraesCS7B01G349500 chr2A 93.431 137 8 1 2340 2475 62219635 62219499 8.370000e-48 202.0
23 TraesCS7B01G349500 chr5D 96.268 2063 62 11 1 2053 178512340 178510283 0.000000e+00 3369.0
24 TraesCS7B01G349500 chr5D 83.913 230 33 3 3994 4220 253968317 253968089 2.990000e-52 217.0
25 TraesCS7B01G349500 chr3B 92.256 2079 100 19 1 2055 800021243 800023284 0.000000e+00 2891.0
26 TraesCS7B01G349500 chr3B 89.391 1527 111 25 546 2055 557174758 557176250 0.000000e+00 1875.0
27 TraesCS7B01G349500 chr3B 87.263 738 69 14 2831 3555 145896503 145895778 0.000000e+00 819.0
28 TraesCS7B01G349500 chr3B 92.568 148 11 0 2024 2171 680923283 680923430 3.870000e-51 213.0
29 TraesCS7B01G349500 chr3B 94.928 138 1 1 4741 4878 666695309 666695178 1.390000e-50 211.0
30 TraesCS7B01G349500 chr3B 91.447 152 10 2 2511 2661 516401818 516401967 6.470000e-49 206.0
31 TraesCS7B01G349500 chr3B 90.789 152 11 2 2511 2661 516938765 516938914 3.010000e-47 200.0
32 TraesCS7B01G349500 chr3B 90.132 152 12 3 2511 2661 515893854 515894003 1.400000e-45 195.0
33 TraesCS7B01G349500 chr4D 95.061 1802 60 8 2472 4250 215193717 215191922 0.000000e+00 2808.0
34 TraesCS7B01G349500 chr4D 94.955 1011 27 5 2472 3460 417864209 417863201 0.000000e+00 1563.0
35 TraesCS7B01G349500 chr4D 94.214 795 37 4 3459 4252 417851211 417850425 0.000000e+00 1205.0
36 TraesCS7B01G349500 chr4D 88.798 732 58 14 2831 3549 465052695 465053415 0.000000e+00 876.0
37 TraesCS7B01G349500 chr4D 92.825 223 16 0 4710 4932 153995913 153996135 1.710000e-84 324.0
38 TraesCS7B01G349500 chr4D 92.627 217 11 3 2063 2278 417865122 417864910 1.720000e-79 307.0
39 TraesCS7B01G349500 chr4D 92.632 190 10 2 2089 2278 215194600 215194415 2.260000e-68 270.0
40 TraesCS7B01G349500 chr4D 97.059 136 4 0 2340 2475 215194167 215194032 3.840000e-56 230.0
41 TraesCS7B01G349500 chr4D 96.324 136 5 0 2340 2475 417864659 417864524 1.790000e-54 224.0
42 TraesCS7B01G349500 chr4D 100.000 30 0 0 2302 2331 215194414 215194385 6.900000e-04 56.5
43 TraesCS7B01G349500 chr7A 89.734 1393 107 18 220 1610 246563818 246565176 0.000000e+00 1748.0
44 TraesCS7B01G349500 chr7A 99.362 470 3 0 4464 4933 217682576 217682107 0.000000e+00 852.0
45 TraesCS7B01G349500 chr7A 98.214 336 6 0 4464 4799 217683058 217682723 5.500000e-164 588.0
46 TraesCS7B01G349500 chr7A 89.151 424 28 8 1647 2053 246565183 246565605 3.410000e-141 512.0
47 TraesCS7B01G349500 chr7A 78.656 253 40 10 2052 2301 84661131 84661372 6.610000e-34 156.0
48 TraesCS7B01G349500 chr6B 90.674 1083 73 19 3134 4204 112884712 112883646 0.000000e+00 1415.0
49 TraesCS7B01G349500 chr6B 98.883 179 2 0 4755 4933 430554891 430554713 2.220000e-83 320.0
50 TraesCS7B01G349500 chr6B 90.909 198 18 0 2856 3053 112884961 112884764 2.930000e-67 267.0
51 TraesCS7B01G349500 chr6B 100.000 34 0 0 3100 3133 112884766 112884733 4.120000e-06 63.9
52 TraesCS7B01G349500 chr6A 86.742 1320 109 23 791 2056 532267898 532269205 0.000000e+00 1408.0
53 TraesCS7B01G349500 chr6A 96.724 519 12 3 4419 4933 531546291 531546808 0.000000e+00 859.0
54 TraesCS7B01G349500 chr6A 99.248 266 2 0 4668 4933 592471564 592471829 9.600000e-132 481.0
55 TraesCS7B01G349500 chr6A 95.349 215 10 0 4250 4464 588349216 588349430 4.730000e-90 342.0
56 TraesCS7B01G349500 chr4A 87.701 1179 95 26 895 2055 377537305 377536159 0.000000e+00 1328.0
57 TraesCS7B01G349500 chr4A 90.493 852 55 14 2 836 377538143 377537301 0.000000e+00 1101.0
58 TraesCS7B01G349500 chr1D 89.314 1020 85 17 3236 4245 164853729 164852724 0.000000e+00 1258.0
59 TraesCS7B01G349500 chr1D 87.580 628 62 12 2590 3212 164855165 164854549 0.000000e+00 713.0
60 TraesCS7B01G349500 chr3D 90.888 845 45 11 8 836 230764767 230763939 0.000000e+00 1105.0
61 TraesCS7B01G349500 chr3D 89.263 801 46 19 895 1687 230763943 230763175 0.000000e+00 966.0
62 TraesCS7B01G349500 chr3D 93.494 415 23 2 3839 4250 103812243 103811830 9.080000e-172 614.0
63 TraesCS7B01G349500 chr3D 86.738 279 26 4 4250 4526 275624205 275624474 2.890000e-77 300.0
64 TraesCS7B01G349500 chr3D 89.238 223 22 2 4250 4470 371631781 371632003 1.350000e-70 278.0
65 TraesCS7B01G349500 chr3D 89.815 216 21 1 4250 4464 32158967 32159182 4.860000e-70 276.0
66 TraesCS7B01G349500 chr3D 77.947 263 39 13 3881 4139 395031316 395031069 3.980000e-31 147.0
67 TraesCS7B01G349500 chr5A 94.900 549 26 1 3701 4249 60754302 60754848 0.000000e+00 857.0
68 TraesCS7B01G349500 chr5A 96.104 231 8 1 4250 4479 648906143 648906373 4.660000e-100 375.0
69 TraesCS7B01G349500 chr5A 93.151 146 9 1 2024 2168 119020428 119020573 3.870000e-51 213.0
70 TraesCS7B01G349500 chr5A 77.647 255 41 13 2055 2304 595916911 595916668 1.850000e-29 141.0
71 TraesCS7B01G349500 chr1A 98.723 470 6 0 4464 4933 590992733 590993202 0.000000e+00 835.0
72 TraesCS7B01G349500 chr1A 84.141 227 32 3 3994 4217 99707555 99707780 2.990000e-52 217.0
73 TraesCS7B01G349500 chr1A 97.917 48 1 0 2423 2470 48200097 48200050 3.160000e-12 84.2
74 TraesCS7B01G349500 chr7D 94.699 415 18 2 3839 4250 590492889 590493302 4.160000e-180 641.0
75 TraesCS7B01G349500 chr7D 95.913 367 13 1 1688 2054 161585589 161585953 1.180000e-165 593.0
76 TraesCS7B01G349500 chr7D 94.737 304 8 4 1395 1690 161547456 161547759 2.690000e-127 466.0
77 TraesCS7B01G349500 chr7D 89.700 233 20 4 4250 4479 87185661 87185892 1.340000e-75 294.0
78 TraesCS7B01G349500 chr2D 93.976 415 21 2 3839 4250 166155124 166155537 4.190000e-175 625.0
79 TraesCS7B01G349500 chr2D 91.244 217 18 1 4251 4466 399205810 399206026 1.340000e-75 294.0
80 TraesCS7B01G349500 chr6D 91.892 148 10 2 2025 2171 324560993 324561139 6.470000e-49 206.0
81 TraesCS7B01G349500 chr6D 76.139 373 69 16 3881 4249 38485774 38486130 1.410000e-40 178.0
82 TraesCS7B01G349500 chr1B 90.984 122 8 2 3541 3661 37620296 37620415 1.420000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G349500 chr7B 606352537 606357469 4932 False 9110.000000 9110 100.000000 1 4933 1 chr7B.!!$F1 4932
1 TraesCS7B01G349500 chr5B 248654775 248658652 3877 True 2297.000000 3762 97.401500 1 4933 2 chr5B.!!$R2 4932
2 TraesCS7B01G349500 chr5B 239331205 239331930 725 True 835.000000 835 87.703000 2831 3555 1 chr5B.!!$R1 724
3 TraesCS7B01G349500 chr3A 585751493 585753546 2053 False 3705.000000 3705 99.221000 1 2055 1 chr3A.!!$F1 2054
4 TraesCS7B01G349500 chr3A 306860677 306862661 1984 True 1297.500000 1437 90.518500 2 2055 2 chr3A.!!$R4 2053
5 TraesCS7B01G349500 chr3A 205318605 205320427 1822 True 1132.000000 1698 89.183000 220 2101 2 chr3A.!!$R3 1881
6 TraesCS7B01G349500 chr2A 191912824 191916121 3297 False 1447.333333 3661 96.425667 2025 4592 3 chr2A.!!$F2 2567
7 TraesCS7B01G349500 chr2A 62217547 62219635 2088 True 1364.500000 2527 94.129000 2340 4083 2 chr2A.!!$R3 1743
8 TraesCS7B01G349500 chr2A 191901870 191902907 1037 False 725.500000 789 96.646500 4437 4933 2 chr2A.!!$F1 496
9 TraesCS7B01G349500 chr2A 743441670 743443198 1528 False 706.000000 1062 91.510000 583 2055 2 chr2A.!!$F3 1472
10 TraesCS7B01G349500 chr5D 178510283 178512340 2057 True 3369.000000 3369 96.268000 1 2053 1 chr5D.!!$R1 2052
11 TraesCS7B01G349500 chr3B 800021243 800023284 2041 False 2891.000000 2891 92.256000 1 2055 1 chr3B.!!$F6 2054
12 TraesCS7B01G349500 chr3B 557174758 557176250 1492 False 1875.000000 1875 89.391000 546 2055 1 chr3B.!!$F4 1509
13 TraesCS7B01G349500 chr3B 145895778 145896503 725 True 819.000000 819 87.263000 2831 3555 1 chr3B.!!$R1 724
14 TraesCS7B01G349500 chr4D 417850425 417851211 786 True 1205.000000 1205 94.214000 3459 4252 1 chr4D.!!$R1 793
15 TraesCS7B01G349500 chr4D 465052695 465053415 720 False 876.000000 876 88.798000 2831 3549 1 chr4D.!!$F2 718
16 TraesCS7B01G349500 chr4D 215191922 215194600 2678 True 841.125000 2808 96.188000 2089 4250 4 chr4D.!!$R2 2161
17 TraesCS7B01G349500 chr4D 417863201 417865122 1921 True 698.000000 1563 94.635333 2063 3460 3 chr4D.!!$R3 1397
18 TraesCS7B01G349500 chr7A 246563818 246565605 1787 False 1130.000000 1748 89.442500 220 2053 2 chr7A.!!$F2 1833
19 TraesCS7B01G349500 chr7A 217682107 217683058 951 True 720.000000 852 98.788000 4464 4933 2 chr7A.!!$R1 469
20 TraesCS7B01G349500 chr6B 112883646 112884961 1315 True 581.966667 1415 93.861000 2856 4204 3 chr6B.!!$R2 1348
21 TraesCS7B01G349500 chr6A 532267898 532269205 1307 False 1408.000000 1408 86.742000 791 2056 1 chr6A.!!$F2 1265
22 TraesCS7B01G349500 chr6A 531546291 531546808 517 False 859.000000 859 96.724000 4419 4933 1 chr6A.!!$F1 514
23 TraesCS7B01G349500 chr4A 377536159 377538143 1984 True 1214.500000 1328 89.097000 2 2055 2 chr4A.!!$R1 2053
24 TraesCS7B01G349500 chr1D 164852724 164855165 2441 True 985.500000 1258 88.447000 2590 4245 2 chr1D.!!$R1 1655
25 TraesCS7B01G349500 chr3D 230763175 230764767 1592 True 1035.500000 1105 90.075500 8 1687 2 chr3D.!!$R3 1679
26 TraesCS7B01G349500 chr5A 60754302 60754848 546 False 857.000000 857 94.900000 3701 4249 1 chr5A.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 1.758280 GTCCGTACCATGTATCCACCA 59.242 52.381 0.0 0.0 0.00 4.17 F
671 697 2.042162 AGTGATGGATTGGAGCTTTGGT 59.958 45.455 0.0 0.0 0.00 3.67 F
2331 2612 0.383949 CTCCTACGCCAGAGAGCTTC 59.616 60.000 0.0 0.0 31.43 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2255 2536 2.500229 GGTTGACAGGGAACGATCAAA 58.500 47.619 0.00 0.00 39.65 2.69 R
2414 3458 8.417273 TGTATAATCGGAATCAGACCATCTTA 57.583 34.615 0.00 0.00 0.00 2.10 R
4222 6592 0.317770 AAAGTCCGTGCATTGCAACG 60.318 50.000 13.94 17.64 41.47 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 1.758280 GTCCGTACCATGTATCCACCA 59.242 52.381 0.00 0.00 0.00 4.17
228 245 7.919091 CAGATTTGTGCGGTCTAAATAGTACTA 59.081 37.037 4.77 4.77 0.00 1.82
671 697 2.042162 AGTGATGGATTGGAGCTTTGGT 59.958 45.455 0.00 0.00 0.00 3.67
793 819 9.234384 CAGTACTACCTTGTCGATTTATACTTG 57.766 37.037 0.00 0.00 0.00 3.16
823 850 5.051816 CAGAGAGCAAAATCCAAAGCAAAA 58.948 37.500 0.00 0.00 0.00 2.44
2119 2400 3.181530 CGTCACAATACGCTTTCTTCCTG 60.182 47.826 0.00 0.00 35.87 3.86
2331 2612 0.383949 CTCCTACGCCAGAGAGCTTC 59.616 60.000 0.00 0.00 31.43 3.86
2335 2616 2.516048 TACGCCAGAGAGCTTCCCCT 62.516 60.000 0.00 0.00 0.00 4.79
2337 2618 2.741055 GCCAGAGAGCTTCCCCTCC 61.741 68.421 0.00 0.00 32.17 4.30
2338 2619 1.002792 CCAGAGAGCTTCCCCTCCT 59.997 63.158 0.00 0.00 32.17 3.69
2414 3458 2.434884 CTTCCACGGCACATCGCT 60.435 61.111 0.00 0.00 41.91 4.93
2535 3916 9.740239 GAGAAATCATTGCAAATTATCTGCTTA 57.260 29.630 1.71 0.00 40.59 3.09
2788 4170 1.788308 CTGATTGGCGTTTTGCTTGTG 59.212 47.619 0.00 0.00 45.43 3.33
2853 4369 5.623673 GTGTCGTTGGTTGTTTATTCATCAC 59.376 40.000 0.00 0.00 0.00 3.06
3555 5910 7.211573 AGAACATTCATTTTCACATTGCTTGA 58.788 30.769 0.00 0.00 0.00 3.02
3621 5977 2.515926 TCTCTGCATGCCGATAGTTC 57.484 50.000 16.68 0.00 0.00 3.01
3952 6318 5.681494 TGAGACTAGTGAAGGGGGTATAT 57.319 43.478 0.00 0.00 0.00 0.86
4212 6582 6.235765 TCAGGATAGGGGTGTACCATATTA 57.764 41.667 3.11 0.00 45.77 0.98
4213 6583 6.822374 TCAGGATAGGGGTGTACCATATTAT 58.178 40.000 3.11 0.00 45.77 1.28
4214 6584 7.260891 TCAGGATAGGGGTGTACCATATTATT 58.739 38.462 3.11 0.00 45.77 1.40
4215 6585 7.742213 TCAGGATAGGGGTGTACCATATTATTT 59.258 37.037 3.11 0.00 45.77 1.40
4216 6586 8.390921 CAGGATAGGGGTGTACCATATTATTTT 58.609 37.037 3.11 0.00 45.77 1.82
4217 6587 9.638110 AGGATAGGGGTGTACCATATTATTTTA 57.362 33.333 3.11 0.00 45.77 1.52
4218 6588 9.676861 GGATAGGGGTGTACCATATTATTTTAC 57.323 37.037 3.11 0.00 45.77 2.01
4222 6592 8.222637 AGGGGTGTACCATATTATTTTACTTCC 58.777 37.037 3.11 0.00 42.91 3.46
4223 6593 7.173735 GGGGTGTACCATATTATTTTACTTCCG 59.826 40.741 3.11 0.00 42.91 4.30
4224 6594 7.716560 GGGTGTACCATATTATTTTACTTCCGT 59.283 37.037 3.11 0.00 39.85 4.69
4225 6595 9.112725 GGTGTACCATATTATTTTACTTCCGTT 57.887 33.333 0.00 0.00 35.64 4.44
4226 6596 9.925268 GTGTACCATATTATTTTACTTCCGTTG 57.075 33.333 0.00 0.00 0.00 4.10
4227 6597 8.614346 TGTACCATATTATTTTACTTCCGTTGC 58.386 33.333 0.00 0.00 0.00 4.17
4228 6598 7.633193 ACCATATTATTTTACTTCCGTTGCA 57.367 32.000 0.00 0.00 0.00 4.08
4229 6599 8.057536 ACCATATTATTTTACTTCCGTTGCAA 57.942 30.769 0.00 0.00 0.00 4.08
4230 6600 8.691797 ACCATATTATTTTACTTCCGTTGCAAT 58.308 29.630 0.59 0.00 0.00 3.56
4231 6601 8.967218 CCATATTATTTTACTTCCGTTGCAATG 58.033 33.333 11.90 11.90 0.00 2.82
4232 6602 6.885735 ATTATTTTACTTCCGTTGCAATGC 57.114 33.333 13.42 0.00 0.00 3.56
4233 6603 3.717400 TTTTACTTCCGTTGCAATGCA 57.283 38.095 13.42 2.72 36.47 3.96
4234 6604 2.697431 TTACTTCCGTTGCAATGCAC 57.303 45.000 7.72 2.39 38.71 4.57
4235 6605 0.515127 TACTTCCGTTGCAATGCACG 59.485 50.000 7.72 14.71 38.71 5.34
4236 6606 1.442520 CTTCCGTTGCAATGCACGG 60.443 57.895 29.56 29.56 46.29 4.94
4239 6609 2.945984 CGTTGCAATGCACGGACT 59.054 55.556 7.72 0.00 38.71 3.85
4240 6610 1.282570 CGTTGCAATGCACGGACTT 59.717 52.632 7.72 0.00 38.71 3.01
4241 6611 0.317770 CGTTGCAATGCACGGACTTT 60.318 50.000 7.72 0.00 38.71 2.66
4242 6612 1.851658 GTTGCAATGCACGGACTTTT 58.148 45.000 7.72 0.00 38.71 2.27
4243 6613 2.200899 GTTGCAATGCACGGACTTTTT 58.799 42.857 7.72 0.00 38.71 1.94
4265 6635 3.836365 GCTAGAAGATCTCTTGCCCTT 57.164 47.619 13.50 0.00 44.36 3.95
4266 6636 4.149511 GCTAGAAGATCTCTTGCCCTTT 57.850 45.455 13.50 0.00 44.36 3.11
4267 6637 4.522114 GCTAGAAGATCTCTTGCCCTTTT 58.478 43.478 13.50 0.00 44.36 2.27
4268 6638 4.574421 GCTAGAAGATCTCTTGCCCTTTTC 59.426 45.833 13.50 0.00 44.36 2.29
4269 6639 4.925390 AGAAGATCTCTTGCCCTTTTCT 57.075 40.909 0.00 0.00 36.11 2.52
4270 6640 5.253991 AGAAGATCTCTTGCCCTTTTCTT 57.746 39.130 0.00 0.00 36.11 2.52
4271 6641 5.639139 AGAAGATCTCTTGCCCTTTTCTTT 58.361 37.500 0.00 0.00 36.11 2.52
4272 6642 5.476254 AGAAGATCTCTTGCCCTTTTCTTTG 59.524 40.000 0.00 0.00 36.11 2.77
4273 6643 4.734266 AGATCTCTTGCCCTTTTCTTTGT 58.266 39.130 0.00 0.00 0.00 2.83
4274 6644 5.880901 AGATCTCTTGCCCTTTTCTTTGTA 58.119 37.500 0.00 0.00 0.00 2.41
4275 6645 5.707764 AGATCTCTTGCCCTTTTCTTTGTAC 59.292 40.000 0.00 0.00 0.00 2.90
4276 6646 3.813166 TCTCTTGCCCTTTTCTTTGTACG 59.187 43.478 0.00 0.00 0.00 3.67
4277 6647 3.547746 TCTTGCCCTTTTCTTTGTACGT 58.452 40.909 0.00 0.00 0.00 3.57
4278 6648 4.706035 TCTTGCCCTTTTCTTTGTACGTA 58.294 39.130 0.00 0.00 0.00 3.57
4279 6649 4.753107 TCTTGCCCTTTTCTTTGTACGTAG 59.247 41.667 0.00 0.00 0.00 3.51
4281 6651 5.212532 TGCCCTTTTCTTTGTACGTAGTA 57.787 39.130 0.00 0.00 45.11 1.82
4297 6667 6.512342 ACGTAGTAAATCTACACTCAAGCT 57.488 37.500 0.00 0.00 46.66 3.74
4298 6668 6.921914 ACGTAGTAAATCTACACTCAAGCTT 58.078 36.000 0.00 0.00 46.66 3.74
4299 6669 7.376615 ACGTAGTAAATCTACACTCAAGCTTT 58.623 34.615 0.00 0.00 46.66 3.51
4300 6670 7.328737 ACGTAGTAAATCTACACTCAAGCTTTG 59.671 37.037 0.00 0.00 46.66 2.77
4301 6671 7.328737 CGTAGTAAATCTACACTCAAGCTTTGT 59.671 37.037 7.39 7.39 46.66 2.83
4302 6672 8.989980 GTAGTAAATCTACACTCAAGCTTTGTT 58.010 33.333 7.54 0.00 45.88 2.83
4303 6673 8.451908 AGTAAATCTACACTCAAGCTTTGTTT 57.548 30.769 7.54 1.15 0.00 2.83
4304 6674 9.555727 AGTAAATCTACACTCAAGCTTTGTTTA 57.444 29.630 7.54 2.20 0.00 2.01
4310 6680 9.772973 TCTACACTCAAGCTTTGTTTAAATAGA 57.227 29.630 7.54 1.54 0.00 1.98
4313 6683 9.120538 ACACTCAAGCTTTGTTTAAATAGAAGA 57.879 29.630 0.00 0.00 0.00 2.87
4314 6684 9.387123 CACTCAAGCTTTGTTTAAATAGAAGAC 57.613 33.333 0.00 4.62 0.00 3.01
4315 6685 9.120538 ACTCAAGCTTTGTTTAAATAGAAGACA 57.879 29.630 0.00 0.00 0.00 3.41
4317 6687 9.897744 TCAAGCTTTGTTTAAATAGAAGACATG 57.102 29.630 0.00 0.00 0.00 3.21
4318 6688 9.683069 CAAGCTTTGTTTAAATAGAAGACATGT 57.317 29.630 0.00 0.00 0.00 3.21
4333 6703 8.545229 AGAAGACATGTAGAATCTTGAACTTG 57.455 34.615 0.00 0.00 32.83 3.16
4334 6704 6.734104 AGACATGTAGAATCTTGAACTTGC 57.266 37.500 0.00 0.00 0.00 4.01
4335 6705 5.349817 AGACATGTAGAATCTTGAACTTGCG 59.650 40.000 0.00 0.00 0.00 4.85
4336 6706 4.142816 ACATGTAGAATCTTGAACTTGCGC 60.143 41.667 0.00 0.00 0.00 6.09
4337 6707 3.664107 TGTAGAATCTTGAACTTGCGCT 58.336 40.909 9.73 0.00 0.00 5.92
4338 6708 4.065088 TGTAGAATCTTGAACTTGCGCTT 58.935 39.130 9.73 0.00 0.00 4.68
4339 6709 4.515191 TGTAGAATCTTGAACTTGCGCTTT 59.485 37.500 9.73 0.00 0.00 3.51
4340 6710 4.574599 AGAATCTTGAACTTGCGCTTTT 57.425 36.364 9.73 0.00 0.00 2.27
4341 6711 4.293415 AGAATCTTGAACTTGCGCTTTTG 58.707 39.130 9.73 0.00 0.00 2.44
4342 6712 3.715628 ATCTTGAACTTGCGCTTTTGT 57.284 38.095 9.73 0.00 0.00 2.83
4343 6713 4.829064 ATCTTGAACTTGCGCTTTTGTA 57.171 36.364 9.73 0.00 0.00 2.41
4344 6714 4.209452 TCTTGAACTTGCGCTTTTGTAG 57.791 40.909 9.73 0.00 0.00 2.74
4345 6715 3.003275 TCTTGAACTTGCGCTTTTGTAGG 59.997 43.478 9.73 0.00 0.00 3.18
4346 6716 1.001815 TGAACTTGCGCTTTTGTAGGC 60.002 47.619 9.73 0.00 0.00 3.93
4347 6717 1.001815 GAACTTGCGCTTTTGTAGGCA 60.002 47.619 9.73 0.00 0.00 4.75
4348 6718 1.028905 ACTTGCGCTTTTGTAGGCAA 58.971 45.000 9.73 0.00 37.56 4.52
4349 6719 1.407258 ACTTGCGCTTTTGTAGGCAAA 59.593 42.857 9.73 0.00 42.25 3.68
4361 6731 5.606348 TTGTAGGCAAAAACCATCTTTGT 57.394 34.783 0.00 0.00 36.38 2.83
4362 6732 5.606348 TGTAGGCAAAAACCATCTTTGTT 57.394 34.783 0.00 0.00 36.38 2.83
4363 6733 5.983540 TGTAGGCAAAAACCATCTTTGTTT 58.016 33.333 0.00 0.00 37.52 2.83
4364 6734 5.814705 TGTAGGCAAAAACCATCTTTGTTTG 59.185 36.000 0.00 0.00 36.14 2.93
4365 6735 4.198530 AGGCAAAAACCATCTTTGTTTGG 58.801 39.130 0.00 0.00 36.14 3.28
4366 6736 3.314913 GGCAAAAACCATCTTTGTTTGGG 59.685 43.478 0.00 0.00 36.14 4.12
4367 6737 3.243035 GCAAAAACCATCTTTGTTTGGGC 60.243 43.478 0.00 0.00 36.14 5.36
4368 6738 2.928801 AAACCATCTTTGTTTGGGCC 57.071 45.000 0.00 0.00 37.32 5.80
4369 6739 0.678950 AACCATCTTTGTTTGGGCCG 59.321 50.000 0.00 0.00 37.32 6.13
4370 6740 0.469144 ACCATCTTTGTTTGGGCCGT 60.469 50.000 0.00 0.00 37.32 5.68
4371 6741 1.202952 ACCATCTTTGTTTGGGCCGTA 60.203 47.619 0.00 0.00 37.32 4.02
4372 6742 1.472480 CCATCTTTGTTTGGGCCGTAG 59.528 52.381 0.00 0.00 0.00 3.51
4373 6743 2.159382 CATCTTTGTTTGGGCCGTAGT 58.841 47.619 0.00 0.00 0.00 2.73
4374 6744 2.351706 TCTTTGTTTGGGCCGTAGTT 57.648 45.000 0.00 0.00 0.00 2.24
4375 6745 3.488778 TCTTTGTTTGGGCCGTAGTTA 57.511 42.857 0.00 0.00 0.00 2.24
4376 6746 3.140623 TCTTTGTTTGGGCCGTAGTTAC 58.859 45.455 0.00 0.00 0.00 2.50
4377 6747 2.634815 TTGTTTGGGCCGTAGTTACA 57.365 45.000 0.00 0.00 0.00 2.41
4378 6748 2.634815 TGTTTGGGCCGTAGTTACAA 57.365 45.000 0.00 0.00 0.00 2.41
4379 6749 2.928334 TGTTTGGGCCGTAGTTACAAA 58.072 42.857 0.00 0.00 0.00 2.83
4380 6750 3.488363 TGTTTGGGCCGTAGTTACAAAT 58.512 40.909 0.00 0.00 34.11 2.32
4381 6751 4.649692 TGTTTGGGCCGTAGTTACAAATA 58.350 39.130 0.00 0.00 34.11 1.40
4382 6752 4.455190 TGTTTGGGCCGTAGTTACAAATAC 59.545 41.667 0.00 0.00 34.11 1.89
4383 6753 4.556592 TTGGGCCGTAGTTACAAATACT 57.443 40.909 0.00 0.00 0.00 2.12
4384 6754 4.127566 TGGGCCGTAGTTACAAATACTC 57.872 45.455 0.00 0.00 0.00 2.59
4385 6755 3.514706 TGGGCCGTAGTTACAAATACTCA 59.485 43.478 0.00 0.00 0.00 3.41
4386 6756 4.020396 TGGGCCGTAGTTACAAATACTCAA 60.020 41.667 0.00 0.00 0.00 3.02
4387 6757 4.937015 GGGCCGTAGTTACAAATACTCAAA 59.063 41.667 0.00 0.00 0.00 2.69
4388 6758 5.587443 GGGCCGTAGTTACAAATACTCAAAT 59.413 40.000 0.00 0.00 0.00 2.32
4389 6759 6.094464 GGGCCGTAGTTACAAATACTCAAATT 59.906 38.462 0.00 0.00 0.00 1.82
4390 6760 7.280652 GGGCCGTAGTTACAAATACTCAAATTA 59.719 37.037 0.00 0.00 0.00 1.40
4391 6761 8.833493 GGCCGTAGTTACAAATACTCAAATTAT 58.167 33.333 0.00 0.00 0.00 1.28
4418 6788 9.131791 AGACCATTTTGTGTAAATTAAGAGTGT 57.868 29.630 0.00 0.00 34.19 3.55
4419 6789 9.180678 GACCATTTTGTGTAAATTAAGAGTGTG 57.819 33.333 0.00 0.00 34.19 3.82
4420 6790 7.651704 ACCATTTTGTGTAAATTAAGAGTGTGC 59.348 33.333 0.00 0.00 34.19 4.57
4421 6791 7.148983 CCATTTTGTGTAAATTAAGAGTGTGCG 60.149 37.037 0.00 0.00 34.19 5.34
4422 6792 5.351233 TTGTGTAAATTAAGAGTGTGCGG 57.649 39.130 0.00 0.00 0.00 5.69
4423 6793 4.382291 TGTGTAAATTAAGAGTGTGCGGT 58.618 39.130 0.00 0.00 0.00 5.68
4424 6794 5.539979 TGTGTAAATTAAGAGTGTGCGGTA 58.460 37.500 0.00 0.00 0.00 4.02
4425 6795 6.167685 TGTGTAAATTAAGAGTGTGCGGTAT 58.832 36.000 0.00 0.00 0.00 2.73
4426 6796 6.651643 TGTGTAAATTAAGAGTGTGCGGTATT 59.348 34.615 0.00 0.00 0.00 1.89
4427 6797 7.148540 TGTGTAAATTAAGAGTGTGCGGTATTC 60.149 37.037 0.00 0.00 0.00 1.75
4428 6798 7.064253 GTGTAAATTAAGAGTGTGCGGTATTCT 59.936 37.037 0.00 0.00 0.00 2.40
4429 6799 7.604927 TGTAAATTAAGAGTGTGCGGTATTCTT 59.395 33.333 0.00 0.00 33.15 2.52
4430 6800 7.448748 AAATTAAGAGTGTGCGGTATTCTTT 57.551 32.000 0.00 0.00 31.19 2.52
4431 6801 7.448748 AATTAAGAGTGTGCGGTATTCTTTT 57.551 32.000 0.00 0.00 31.19 2.27
4432 6802 6.476243 TTAAGAGTGTGCGGTATTCTTTTC 57.524 37.500 0.00 0.00 31.19 2.29
4433 6803 4.273148 AGAGTGTGCGGTATTCTTTTCT 57.727 40.909 0.00 0.00 0.00 2.52
4434 6804 4.246458 AGAGTGTGCGGTATTCTTTTCTC 58.754 43.478 0.00 0.00 0.00 2.87
4435 6805 3.335579 AGTGTGCGGTATTCTTTTCTCC 58.664 45.455 0.00 0.00 0.00 3.71
4438 6808 1.276989 TGCGGTATTCTTTTCTCCCGT 59.723 47.619 0.00 0.00 37.76 5.28
4453 6823 4.659874 CGTTGCAACGCACGGGTC 62.660 66.667 35.89 3.35 46.06 4.46
4455 6825 2.515057 TTGCAACGCACGGGTCTT 60.515 55.556 0.00 0.00 38.71 3.01
4616 7760 2.613595 GGGAACCGTTCGTAGTTTTGTT 59.386 45.455 5.19 0.00 40.86 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 6.408662 GCATAGGAACACTCTCCTTAGGAAAT 60.409 42.308 1.41 0.00 43.76 2.17
228 245 5.306678 TGCACCCTTCCAGAAAACAAAATAT 59.693 36.000 0.00 0.00 0.00 1.28
793 819 2.637947 GATTTTGCTCTCTGGTCCTCC 58.362 52.381 0.00 0.00 0.00 4.30
823 850 2.677228 GGCAGGCATGTGTAGGGT 59.323 61.111 0.00 0.00 0.00 4.34
2255 2536 2.500229 GGTTGACAGGGAACGATCAAA 58.500 47.619 0.00 0.00 39.65 2.69
2414 3458 8.417273 TGTATAATCGGAATCAGACCATCTTA 57.583 34.615 0.00 0.00 0.00 2.10
2788 4170 1.353103 CCTGCCGATTGATTCGCAC 59.647 57.895 0.00 0.00 46.71 5.34
2853 4369 5.064707 TGAACTGAAAGAAACAAGAAGACCG 59.935 40.000 0.00 0.00 37.43 4.79
3555 5910 4.342862 AATAGAATGACCTAGCGCATGT 57.657 40.909 11.47 2.51 0.00 3.21
3621 5977 4.082845 TCTAGGGAGAGCTATTCGAATGG 58.917 47.826 20.87 18.60 0.00 3.16
3731 6097 7.557719 ACCAAAATATCAAACTACTGGATGAGG 59.442 37.037 0.00 0.00 0.00 3.86
3779 6145 3.394674 TGTTTTCGGTCTGCTACATGA 57.605 42.857 0.00 0.00 0.00 3.07
3898 6264 6.862608 CGAGATCTCTGAAGAATCAACATAGG 59.137 42.308 20.26 0.00 34.49 2.57
3939 6305 5.795079 TCTTCCTAACATATACCCCCTTCA 58.205 41.667 0.00 0.00 0.00 3.02
3952 6318 4.033709 CTCATCTCCCCTTCTTCCTAACA 58.966 47.826 0.00 0.00 0.00 2.41
4218 6588 4.135570 CGTGCATTGCAACGGAAG 57.864 55.556 13.94 0.00 41.47 3.46
4221 6591 2.126888 GTCCGTGCATTGCAACGG 60.127 61.111 30.14 30.14 46.29 4.44
4222 6592 0.317770 AAAGTCCGTGCATTGCAACG 60.318 50.000 13.94 17.64 41.47 4.10
4223 6593 1.851658 AAAAGTCCGTGCATTGCAAC 58.148 45.000 13.94 8.38 41.47 4.17
4224 6594 2.593346 AAAAAGTCCGTGCATTGCAA 57.407 40.000 13.94 0.00 41.47 4.08
4240 6610 4.702131 GGGCAAGAGATCTTCTAGCAAAAA 59.298 41.667 0.00 0.00 34.14 1.94
4241 6611 4.018960 AGGGCAAGAGATCTTCTAGCAAAA 60.019 41.667 0.00 0.00 34.14 2.44
4242 6612 3.521126 AGGGCAAGAGATCTTCTAGCAAA 59.479 43.478 0.00 0.00 34.14 3.68
4243 6613 3.110705 AGGGCAAGAGATCTTCTAGCAA 58.889 45.455 0.00 0.00 34.14 3.91
4244 6614 2.756907 AGGGCAAGAGATCTTCTAGCA 58.243 47.619 0.00 0.00 34.14 3.49
4245 6615 3.836365 AAGGGCAAGAGATCTTCTAGC 57.164 47.619 0.00 0.00 34.14 3.42
4246 6616 5.988287 AGAAAAGGGCAAGAGATCTTCTAG 58.012 41.667 0.00 0.00 34.14 2.43
4247 6617 6.380079 AAGAAAAGGGCAAGAGATCTTCTA 57.620 37.500 0.00 0.00 34.14 2.10
4248 6618 4.925390 AGAAAAGGGCAAGAGATCTTCT 57.075 40.909 0.00 0.00 37.93 2.85
4249 6619 5.242615 ACAAAGAAAAGGGCAAGAGATCTTC 59.757 40.000 0.00 0.00 33.11 2.87
4250 6620 5.143369 ACAAAGAAAAGGGCAAGAGATCTT 58.857 37.500 0.00 0.00 36.45 2.40
4251 6621 4.734266 ACAAAGAAAAGGGCAAGAGATCT 58.266 39.130 0.00 0.00 0.00 2.75
4252 6622 5.390991 CGTACAAAGAAAAGGGCAAGAGATC 60.391 44.000 0.00 0.00 0.00 2.75
4253 6623 4.455877 CGTACAAAGAAAAGGGCAAGAGAT 59.544 41.667 0.00 0.00 0.00 2.75
4254 6624 3.813166 CGTACAAAGAAAAGGGCAAGAGA 59.187 43.478 0.00 0.00 0.00 3.10
4255 6625 3.564225 ACGTACAAAGAAAAGGGCAAGAG 59.436 43.478 0.00 0.00 0.00 2.85
4256 6626 3.547746 ACGTACAAAGAAAAGGGCAAGA 58.452 40.909 0.00 0.00 0.00 3.02
4257 6627 3.982576 ACGTACAAAGAAAAGGGCAAG 57.017 42.857 0.00 0.00 0.00 4.01
4258 6628 4.453751 ACTACGTACAAAGAAAAGGGCAA 58.546 39.130 0.00 0.00 0.00 4.52
4259 6629 4.075963 ACTACGTACAAAGAAAAGGGCA 57.924 40.909 0.00 0.00 0.00 5.36
4260 6630 6.544038 TTTACTACGTACAAAGAAAAGGGC 57.456 37.500 0.00 0.00 0.00 5.19
4261 6631 8.543862 AGATTTACTACGTACAAAGAAAAGGG 57.456 34.615 0.00 0.00 0.00 3.95
4277 6647 9.555727 AAACAAAGCTTGAGTGTAGATTTACTA 57.444 29.630 0.00 0.00 30.72 1.82
4278 6648 8.451908 AAACAAAGCTTGAGTGTAGATTTACT 57.548 30.769 0.00 0.00 30.72 2.24
4284 6654 9.772973 TCTATTTAAACAAAGCTTGAGTGTAGA 57.227 29.630 0.00 0.00 0.00 2.59
4287 6657 9.120538 TCTTCTATTTAAACAAAGCTTGAGTGT 57.879 29.630 0.00 0.00 0.00 3.55
4288 6658 9.387123 GTCTTCTATTTAAACAAAGCTTGAGTG 57.613 33.333 0.00 0.00 0.00 3.51
4289 6659 9.120538 TGTCTTCTATTTAAACAAAGCTTGAGT 57.879 29.630 0.00 0.00 0.00 3.41
4291 6661 9.897744 CATGTCTTCTATTTAAACAAAGCTTGA 57.102 29.630 0.00 0.00 0.00 3.02
4292 6662 9.683069 ACATGTCTTCTATTTAAACAAAGCTTG 57.317 29.630 0.00 0.00 0.00 4.01
4307 6677 9.645059 CAAGTTCAAGATTCTACATGTCTTCTA 57.355 33.333 0.00 0.00 30.19 2.10
4308 6678 7.118971 GCAAGTTCAAGATTCTACATGTCTTCT 59.881 37.037 0.00 0.00 30.19 2.85
4309 6679 7.239972 GCAAGTTCAAGATTCTACATGTCTTC 58.760 38.462 0.00 0.00 30.19 2.87
4310 6680 6.128445 CGCAAGTTCAAGATTCTACATGTCTT 60.128 38.462 0.00 0.00 32.70 3.01
4311 6681 5.349817 CGCAAGTTCAAGATTCTACATGTCT 59.650 40.000 0.00 0.00 0.00 3.41
4312 6682 5.554636 CGCAAGTTCAAGATTCTACATGTC 58.445 41.667 0.00 0.00 0.00 3.06
4313 6683 4.142816 GCGCAAGTTCAAGATTCTACATGT 60.143 41.667 0.30 2.69 41.68 3.21
4314 6684 4.093998 AGCGCAAGTTCAAGATTCTACATG 59.906 41.667 11.47 0.00 41.68 3.21
4315 6685 4.256920 AGCGCAAGTTCAAGATTCTACAT 58.743 39.130 11.47 0.00 41.68 2.29
4316 6686 3.664107 AGCGCAAGTTCAAGATTCTACA 58.336 40.909 11.47 0.00 41.68 2.74
4317 6687 4.670227 AAGCGCAAGTTCAAGATTCTAC 57.330 40.909 11.47 0.00 41.68 2.59
4318 6688 5.008613 ACAAAAGCGCAAGTTCAAGATTCTA 59.991 36.000 11.47 0.00 41.68 2.10
4319 6689 4.202050 ACAAAAGCGCAAGTTCAAGATTCT 60.202 37.500 11.47 0.00 41.68 2.40
4320 6690 4.044426 ACAAAAGCGCAAGTTCAAGATTC 58.956 39.130 11.47 0.00 41.68 2.52
4321 6691 4.045636 ACAAAAGCGCAAGTTCAAGATT 57.954 36.364 11.47 0.00 41.68 2.40
4322 6692 3.715628 ACAAAAGCGCAAGTTCAAGAT 57.284 38.095 11.47 0.00 41.68 2.40
4323 6693 3.003275 CCTACAAAAGCGCAAGTTCAAGA 59.997 43.478 11.47 0.00 41.68 3.02
4324 6694 3.300009 CCTACAAAAGCGCAAGTTCAAG 58.700 45.455 11.47 0.00 41.68 3.02
4325 6695 2.542824 GCCTACAAAAGCGCAAGTTCAA 60.543 45.455 11.47 0.00 41.68 2.69
4326 6696 1.001815 GCCTACAAAAGCGCAAGTTCA 60.002 47.619 11.47 0.00 41.68 3.18
4327 6697 1.001815 TGCCTACAAAAGCGCAAGTTC 60.002 47.619 11.47 0.00 41.68 3.01
4328 6698 1.028905 TGCCTACAAAAGCGCAAGTT 58.971 45.000 11.47 0.00 41.68 2.66
4329 6699 1.028905 TTGCCTACAAAAGCGCAAGT 58.971 45.000 11.47 4.60 36.83 3.16
4330 6700 2.132740 TTTGCCTACAAAAGCGCAAG 57.867 45.000 11.47 0.00 42.73 4.01
4338 6708 5.983540 ACAAAGATGGTTTTTGCCTACAAA 58.016 33.333 0.00 0.00 43.97 2.83
4339 6709 5.606348 ACAAAGATGGTTTTTGCCTACAA 57.394 34.783 0.00 0.00 38.72 2.41
4340 6710 5.606348 AACAAAGATGGTTTTTGCCTACA 57.394 34.783 0.00 0.00 38.72 2.74
4341 6711 5.236263 CCAAACAAAGATGGTTTTTGCCTAC 59.764 40.000 0.00 0.00 38.72 3.18
4342 6712 5.363939 CCAAACAAAGATGGTTTTTGCCTA 58.636 37.500 0.00 0.00 38.72 3.93
4343 6713 4.198530 CCAAACAAAGATGGTTTTTGCCT 58.801 39.130 0.00 0.00 38.72 4.75
4344 6714 3.314913 CCCAAACAAAGATGGTTTTTGCC 59.685 43.478 0.00 0.00 38.72 4.52
4345 6715 3.243035 GCCCAAACAAAGATGGTTTTTGC 60.243 43.478 0.00 0.00 38.72 3.68
4346 6716 3.314913 GGCCCAAACAAAGATGGTTTTTG 59.685 43.478 0.00 0.00 32.99 2.44
4347 6717 3.550820 GGCCCAAACAAAGATGGTTTTT 58.449 40.909 0.00 0.00 32.99 1.94
4348 6718 2.484594 CGGCCCAAACAAAGATGGTTTT 60.485 45.455 0.00 0.00 32.99 2.43
4349 6719 1.069978 CGGCCCAAACAAAGATGGTTT 59.930 47.619 0.00 0.00 32.99 3.27
4350 6720 0.678950 CGGCCCAAACAAAGATGGTT 59.321 50.000 0.00 0.00 36.75 3.67
4351 6721 0.469144 ACGGCCCAAACAAAGATGGT 60.469 50.000 0.00 0.00 34.79 3.55
4352 6722 1.472480 CTACGGCCCAAACAAAGATGG 59.528 52.381 0.00 0.00 36.42 3.51
4353 6723 2.159382 ACTACGGCCCAAACAAAGATG 58.841 47.619 0.00 0.00 0.00 2.90
4354 6724 2.579410 ACTACGGCCCAAACAAAGAT 57.421 45.000 0.00 0.00 0.00 2.40
4355 6725 2.351706 AACTACGGCCCAAACAAAGA 57.648 45.000 0.00 0.00 0.00 2.52
4356 6726 2.879646 TGTAACTACGGCCCAAACAAAG 59.120 45.455 0.00 0.00 0.00 2.77
4357 6727 2.928334 TGTAACTACGGCCCAAACAAA 58.072 42.857 0.00 0.00 0.00 2.83
4358 6728 2.634815 TGTAACTACGGCCCAAACAA 57.365 45.000 0.00 0.00 0.00 2.83
4359 6729 2.634815 TTGTAACTACGGCCCAAACA 57.365 45.000 0.00 0.00 0.00 2.83
4360 6730 4.696877 AGTATTTGTAACTACGGCCCAAAC 59.303 41.667 0.00 0.00 0.00 2.93
4361 6731 4.909001 AGTATTTGTAACTACGGCCCAAA 58.091 39.130 0.00 0.00 0.00 3.28
4362 6732 4.020396 TGAGTATTTGTAACTACGGCCCAA 60.020 41.667 0.00 0.00 0.00 4.12
4363 6733 3.514706 TGAGTATTTGTAACTACGGCCCA 59.485 43.478 0.00 0.00 0.00 5.36
4364 6734 4.127566 TGAGTATTTGTAACTACGGCCC 57.872 45.455 0.00 0.00 0.00 5.80
4365 6735 6.673154 ATTTGAGTATTTGTAACTACGGCC 57.327 37.500 0.00 0.00 0.00 6.13
4392 6762 9.131791 ACACTCTTAATTTACACAAAATGGTCT 57.868 29.630 0.00 0.00 37.85 3.85
4393 6763 9.180678 CACACTCTTAATTTACACAAAATGGTC 57.819 33.333 0.00 0.00 37.85 4.02
4394 6764 7.651704 GCACACTCTTAATTTACACAAAATGGT 59.348 33.333 0.00 0.00 37.85 3.55
4395 6765 7.148983 CGCACACTCTTAATTTACACAAAATGG 60.149 37.037 0.00 0.00 37.85 3.16
4396 6766 7.148983 CCGCACACTCTTAATTTACACAAAATG 60.149 37.037 0.00 0.00 37.85 2.32
4397 6767 6.861055 CCGCACACTCTTAATTTACACAAAAT 59.139 34.615 0.00 0.00 39.56 1.82
4398 6768 6.183360 ACCGCACACTCTTAATTTACACAAAA 60.183 34.615 0.00 0.00 0.00 2.44
4399 6769 5.297278 ACCGCACACTCTTAATTTACACAAA 59.703 36.000 0.00 0.00 0.00 2.83
4400 6770 4.817464 ACCGCACACTCTTAATTTACACAA 59.183 37.500 0.00 0.00 0.00 3.33
4401 6771 4.382291 ACCGCACACTCTTAATTTACACA 58.618 39.130 0.00 0.00 0.00 3.72
4402 6772 6.657836 ATACCGCACACTCTTAATTTACAC 57.342 37.500 0.00 0.00 0.00 2.90
4403 6773 7.101054 AGAATACCGCACACTCTTAATTTACA 58.899 34.615 0.00 0.00 0.00 2.41
4404 6774 7.535489 AGAATACCGCACACTCTTAATTTAC 57.465 36.000 0.00 0.00 0.00 2.01
4405 6775 8.556213 AAAGAATACCGCACACTCTTAATTTA 57.444 30.769 0.00 0.00 0.00 1.40
4406 6776 7.448748 AAAGAATACCGCACACTCTTAATTT 57.551 32.000 0.00 0.00 0.00 1.82
4407 6777 7.390718 AGAAAAGAATACCGCACACTCTTAATT 59.609 33.333 0.00 0.00 0.00 1.40
4408 6778 6.879458 AGAAAAGAATACCGCACACTCTTAAT 59.121 34.615 0.00 0.00 0.00 1.40
4409 6779 6.228258 AGAAAAGAATACCGCACACTCTTAA 58.772 36.000 0.00 0.00 0.00 1.85
4410 6780 5.790593 AGAAAAGAATACCGCACACTCTTA 58.209 37.500 0.00 0.00 0.00 2.10
4411 6781 4.642429 AGAAAAGAATACCGCACACTCTT 58.358 39.130 0.00 0.00 0.00 2.85
4412 6782 4.246458 GAGAAAAGAATACCGCACACTCT 58.754 43.478 0.00 0.00 0.00 3.24
4413 6783 3.371285 GGAGAAAAGAATACCGCACACTC 59.629 47.826 0.00 0.00 0.00 3.51
4414 6784 3.335579 GGAGAAAAGAATACCGCACACT 58.664 45.455 0.00 0.00 0.00 3.55
4415 6785 2.418976 GGGAGAAAAGAATACCGCACAC 59.581 50.000 0.00 0.00 0.00 3.82
4416 6786 2.706890 GGGAGAAAAGAATACCGCACA 58.293 47.619 0.00 0.00 0.00 4.57
4417 6787 1.664151 CGGGAGAAAAGAATACCGCAC 59.336 52.381 0.00 0.00 34.54 5.34
4418 6788 1.276989 ACGGGAGAAAAGAATACCGCA 59.723 47.619 0.00 0.00 44.73 5.69
4419 6789 2.019948 ACGGGAGAAAAGAATACCGC 57.980 50.000 0.00 0.00 44.73 5.68
4420 6790 2.095372 GCAACGGGAGAAAAGAATACCG 59.905 50.000 0.00 0.00 46.16 4.02
4421 6791 3.078837 TGCAACGGGAGAAAAGAATACC 58.921 45.455 0.00 0.00 0.00 2.73
4422 6792 4.473199 GTTGCAACGGGAGAAAAGAATAC 58.527 43.478 14.90 0.00 0.00 1.89
4423 6793 4.759516 GTTGCAACGGGAGAAAAGAATA 57.240 40.909 14.90 0.00 0.00 1.75
4424 6794 3.643159 GTTGCAACGGGAGAAAAGAAT 57.357 42.857 14.90 0.00 0.00 2.40
4438 6808 1.658686 AAAAGACCCGTGCGTTGCAA 61.659 50.000 0.00 0.00 41.47 4.08
4616 7760 4.624015 ACTACAGAAATTTTGACGGACGA 58.376 39.130 0.00 0.00 0.00 4.20
4818 7962 3.726517 CGCAGGCTGTTGGTTCCG 61.727 66.667 17.16 5.18 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.