Multiple sequence alignment - TraesCS7B01G348700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G348700 chr7B 100.000 4095 0 0 1 4095 605642816 605646910 0.000000e+00 7563.0
1 TraesCS7B01G348700 chr7B 93.932 412 24 1 330 741 725845617 725846027 4.500000e-174 621.0
2 TraesCS7B01G348700 chr7B 96.988 166 5 0 3488 3653 497576786 497576621 3.120000e-71 279.0
3 TraesCS7B01G348700 chr7D 92.554 2780 146 30 750 3489 557574447 557577205 0.000000e+00 3930.0
4 TraesCS7B01G348700 chr7D 89.826 344 18 7 1 329 557574101 557574442 3.780000e-115 425.0
5 TraesCS7B01G348700 chr7D 89.427 227 14 4 3757 3976 557577307 557577530 1.120000e-70 278.0
6 TraesCS7B01G348700 chr7D 89.474 57 6 0 3694 3750 557577263 557577319 5.680000e-09 73.1
7 TraesCS7B01G348700 chr7A 92.633 2484 109 30 749 3183 643075429 643077887 0.000000e+00 3506.0
8 TraesCS7B01G348700 chr7A 88.791 339 19 7 1 329 643075092 643075421 8.250000e-107 398.0
9 TraesCS7B01G348700 chr7A 88.034 234 21 6 3824 4054 643078214 643078443 1.880000e-68 270.0
10 TraesCS7B01G348700 chr7A 89.744 156 10 3 3339 3489 643077907 643078061 1.160000e-45 195.0
11 TraesCS7B01G348700 chr3B 88.308 804 43 19 2584 3365 607414697 607413923 0.000000e+00 917.0
12 TraesCS7B01G348700 chr3B 95.906 171 7 0 3485 3655 630396766 630396936 1.120000e-70 278.0
13 TraesCS7B01G348700 chr3B 92.949 156 10 1 3706 3860 247472195 247472350 4.120000e-55 226.0
14 TraesCS7B01G348700 chr4A 96.394 416 9 5 326 740 540439185 540439595 0.000000e+00 680.0
15 TraesCS7B01G348700 chr4A 94.175 412 20 4 330 740 647319075 647319483 3.480000e-175 625.0
16 TraesCS7B01G348700 chr1B 94.928 414 19 2 332 744 46835444 46835032 0.000000e+00 647.0
17 TraesCS7B01G348700 chr1B 95.808 167 6 1 3488 3653 561836560 561836394 6.750000e-68 268.0
18 TraesCS7B01G348700 chr5B 94.471 416 20 2 327 740 21039065 21039479 4.460000e-179 638.0
19 TraesCS7B01G348700 chr5B 94.019 418 21 4 329 744 621831863 621832278 7.470000e-177 630.0
20 TraesCS7B01G348700 chr5B 97.041 169 5 0 3482 3650 701551643 701551811 6.700000e-73 285.0
21 TraesCS7B01G348700 chr5B 91.026 156 13 1 3706 3860 637414607 637414762 4.150000e-50 209.0
22 TraesCS7B01G348700 chr3A 94.203 414 21 3 330 742 747594801 747594390 2.690000e-176 628.0
23 TraesCS7B01G348700 chr2B 94.189 413 21 3 330 740 593633413 593633002 9.660000e-176 627.0
24 TraesCS7B01G348700 chr2B 97.546 163 4 0 3488 3650 664125038 664125200 3.120000e-71 279.0
25 TraesCS7B01G348700 chr2B 95.882 170 6 1 3484 3653 713695962 713695794 1.450000e-69 274.0
26 TraesCS7B01G348700 chr4B 93.208 427 21 7 315 740 17986661 17987080 4.500000e-174 621.0
27 TraesCS7B01G348700 chr4B 95.322 171 8 0 3481 3651 431792147 431792317 5.220000e-69 272.0
28 TraesCS7B01G348700 chr5D 85.475 358 29 9 2879 3217 168233719 168233366 6.510000e-93 351.0
29 TraesCS7B01G348700 chr6D 96.386 166 6 0 3487 3652 90890281 90890446 1.450000e-69 274.0
30 TraesCS7B01G348700 chr6B 96.364 165 6 0 3486 3650 35822510 35822674 5.220000e-69 272.0
31 TraesCS7B01G348700 chr3D 90.361 83 8 0 1696 1778 479117462 479117380 4.330000e-20 110.0
32 TraesCS7B01G348700 chr2A 88.172 93 10 1 1687 1778 712968527 712968619 4.330000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G348700 chr7B 605642816 605646910 4094 False 7563.000 7563 100.00000 1 4095 1 chr7B.!!$F1 4094
1 TraesCS7B01G348700 chr7D 557574101 557577530 3429 False 1176.525 3930 90.32025 1 3976 4 chr7D.!!$F1 3975
2 TraesCS7B01G348700 chr7A 643075092 643078443 3351 False 1092.250 3506 89.80050 1 4054 4 chr7A.!!$F1 4053
3 TraesCS7B01G348700 chr3B 607413923 607414697 774 True 917.000 917 88.30800 2584 3365 1 chr3B.!!$R1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 765 0.108945 GTAGAAACTCCACGTCCCGG 60.109 60.0 0.0 0.0 0.00 5.73 F
2320 2378 0.031414 TCCCCTACTCCTACAAGGCC 60.031 60.0 0.0 0.0 34.61 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2683 2741 1.523258 CATCAGCTTGCCCTCGGAG 60.523 63.158 0.0 0.0 0.00 4.63 R
3304 3401 0.108138 AGTGATGGAGTAACCGCAGC 60.108 55.000 0.0 0.0 42.61 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.545703 GGCTAGTGCATAATCACCAACT 58.454 45.455 0.00 0.00 41.91 3.16
82 83 3.105248 CCCATGGCCCCATCCTCA 61.105 66.667 6.09 0.00 33.90 3.86
108 115 3.511146 TGCACGATGATCTCAGGCATATA 59.489 43.478 0.00 0.00 0.00 0.86
115 122 5.750352 TGATCTCAGGCATATATTCAGCA 57.250 39.130 0.00 0.00 0.00 4.41
116 123 5.731591 TGATCTCAGGCATATATTCAGCAG 58.268 41.667 0.00 0.00 0.00 4.24
172 180 6.673537 ACTGATAAACCCCATCATTCCAAATT 59.326 34.615 0.00 0.00 32.18 1.82
276 298 2.025037 TGGACATGGAGATTTTGGAGGG 60.025 50.000 0.00 0.00 0.00 4.30
329 352 1.291272 CAAAAGGAGGGCAGCAAGC 59.709 57.895 0.00 0.00 44.65 4.01
339 362 2.244000 GCAGCAAGCGAAAGTACCA 58.756 52.632 0.00 0.00 0.00 3.25
340 363 0.804989 GCAGCAAGCGAAAGTACCAT 59.195 50.000 0.00 0.00 0.00 3.55
341 364 1.200020 GCAGCAAGCGAAAGTACCATT 59.800 47.619 0.00 0.00 0.00 3.16
342 365 2.729156 GCAGCAAGCGAAAGTACCATTC 60.729 50.000 0.00 0.00 0.00 2.67
343 366 2.744202 CAGCAAGCGAAAGTACCATTCT 59.256 45.455 7.25 0.00 0.00 2.40
344 367 3.932710 CAGCAAGCGAAAGTACCATTCTA 59.067 43.478 7.25 0.00 0.00 2.10
345 368 3.933332 AGCAAGCGAAAGTACCATTCTAC 59.067 43.478 7.25 1.07 0.00 2.59
346 369 3.682858 GCAAGCGAAAGTACCATTCTACA 59.317 43.478 7.25 0.00 0.00 2.74
347 370 4.435651 GCAAGCGAAAGTACCATTCTACAC 60.436 45.833 7.25 0.00 0.00 2.90
348 371 3.858247 AGCGAAAGTACCATTCTACACC 58.142 45.455 7.25 0.00 0.00 4.16
349 372 2.934553 GCGAAAGTACCATTCTACACCC 59.065 50.000 7.25 0.00 0.00 4.61
350 373 3.618019 GCGAAAGTACCATTCTACACCCA 60.618 47.826 7.25 0.00 0.00 4.51
351 374 4.181578 CGAAAGTACCATTCTACACCCAG 58.818 47.826 7.25 0.00 0.00 4.45
352 375 4.514401 GAAAGTACCATTCTACACCCAGG 58.486 47.826 0.00 0.00 0.00 4.45
353 376 3.484953 AGTACCATTCTACACCCAGGA 57.515 47.619 0.00 0.00 0.00 3.86
354 377 3.375699 AGTACCATTCTACACCCAGGAG 58.624 50.000 0.00 0.00 0.00 3.69
355 378 0.912486 ACCATTCTACACCCAGGAGC 59.088 55.000 0.00 0.00 0.00 4.70
356 379 0.911769 CCATTCTACACCCAGGAGCA 59.088 55.000 0.00 0.00 0.00 4.26
357 380 1.281867 CCATTCTACACCCAGGAGCAA 59.718 52.381 0.00 0.00 0.00 3.91
358 381 2.290896 CCATTCTACACCCAGGAGCAAA 60.291 50.000 0.00 0.00 0.00 3.68
359 382 3.624777 CATTCTACACCCAGGAGCAAAT 58.375 45.455 0.00 0.00 0.00 2.32
360 383 2.787473 TCTACACCCAGGAGCAAATG 57.213 50.000 0.00 0.00 0.00 2.32
361 384 1.098050 CTACACCCAGGAGCAAATGC 58.902 55.000 0.00 0.00 42.49 3.56
372 395 2.543578 GCAAATGCTCCTCGTGTGA 58.456 52.632 0.00 0.00 38.21 3.58
373 396 0.874390 GCAAATGCTCCTCGTGTGAA 59.126 50.000 0.00 0.00 38.21 3.18
374 397 1.400242 GCAAATGCTCCTCGTGTGAAC 60.400 52.381 0.00 0.00 38.21 3.18
375 398 1.872952 CAAATGCTCCTCGTGTGAACA 59.127 47.619 0.00 0.00 0.00 3.18
376 399 1.800805 AATGCTCCTCGTGTGAACAG 58.199 50.000 0.00 0.00 0.00 3.16
377 400 0.681733 ATGCTCCTCGTGTGAACAGT 59.318 50.000 0.00 0.00 0.00 3.55
378 401 1.324383 TGCTCCTCGTGTGAACAGTA 58.676 50.000 0.00 0.00 0.00 2.74
379 402 1.684450 TGCTCCTCGTGTGAACAGTAA 59.316 47.619 0.00 0.00 0.00 2.24
380 403 2.101750 TGCTCCTCGTGTGAACAGTAAA 59.898 45.455 0.00 0.00 0.00 2.01
381 404 3.128349 GCTCCTCGTGTGAACAGTAAAA 58.872 45.455 0.00 0.00 0.00 1.52
382 405 3.746492 GCTCCTCGTGTGAACAGTAAAAT 59.254 43.478 0.00 0.00 0.00 1.82
383 406 4.143094 GCTCCTCGTGTGAACAGTAAAATC 60.143 45.833 0.00 0.00 0.00 2.17
384 407 4.951254 TCCTCGTGTGAACAGTAAAATCA 58.049 39.130 0.00 0.00 0.00 2.57
385 408 5.361427 TCCTCGTGTGAACAGTAAAATCAA 58.639 37.500 0.00 0.00 0.00 2.57
386 409 5.818336 TCCTCGTGTGAACAGTAAAATCAAA 59.182 36.000 0.00 0.00 0.00 2.69
387 410 6.316640 TCCTCGTGTGAACAGTAAAATCAAAA 59.683 34.615 0.00 0.00 0.00 2.44
388 411 6.970043 CCTCGTGTGAACAGTAAAATCAAAAA 59.030 34.615 0.00 0.00 0.00 1.94
445 468 6.533819 TTTTACGACATACTTCCACAAGTG 57.466 37.500 0.00 0.00 43.17 3.16
446 469 3.746045 ACGACATACTTCCACAAGTGT 57.254 42.857 0.00 0.00 43.17 3.55
447 470 4.067972 ACGACATACTTCCACAAGTGTT 57.932 40.909 0.00 0.00 43.17 3.32
448 471 4.448210 ACGACATACTTCCACAAGTGTTT 58.552 39.130 0.00 0.00 43.17 2.83
449 472 4.510340 ACGACATACTTCCACAAGTGTTTC 59.490 41.667 0.00 0.00 43.17 2.78
450 473 4.750098 CGACATACTTCCACAAGTGTTTCT 59.250 41.667 0.00 0.00 43.17 2.52
451 474 5.236478 CGACATACTTCCACAAGTGTTTCTT 59.764 40.000 0.00 0.00 43.17 2.52
460 483 3.713858 CAAGTGTTTCTTGTGCATGGA 57.286 42.857 0.00 0.00 45.89 3.41
461 484 4.044336 CAAGTGTTTCTTGTGCATGGAA 57.956 40.909 0.00 0.00 45.89 3.53
462 485 4.431809 CAAGTGTTTCTTGTGCATGGAAA 58.568 39.130 0.00 0.00 45.89 3.13
463 486 4.942761 AGTGTTTCTTGTGCATGGAAAT 57.057 36.364 12.40 0.00 32.71 2.17
464 487 5.280654 AGTGTTTCTTGTGCATGGAAATT 57.719 34.783 12.40 3.22 32.71 1.82
465 488 5.673514 AGTGTTTCTTGTGCATGGAAATTT 58.326 33.333 12.40 0.00 32.71 1.82
466 489 6.114767 AGTGTTTCTTGTGCATGGAAATTTT 58.885 32.000 12.40 0.00 32.71 1.82
467 490 6.258507 AGTGTTTCTTGTGCATGGAAATTTTC 59.741 34.615 12.40 0.24 32.71 2.29
468 491 6.036953 GTGTTTCTTGTGCATGGAAATTTTCA 59.963 34.615 11.09 0.54 32.71 2.69
469 492 6.766944 TGTTTCTTGTGCATGGAAATTTTCAT 59.233 30.769 6.11 6.11 32.71 2.57
470 493 7.041916 TGTTTCTTGTGCATGGAAATTTTCATC 60.042 33.333 9.13 5.65 32.71 2.92
471 494 6.099159 TCTTGTGCATGGAAATTTTCATCA 57.901 33.333 9.13 7.98 0.00 3.07
472 495 6.703319 TCTTGTGCATGGAAATTTTCATCAT 58.297 32.000 9.13 3.75 0.00 2.45
473 496 7.838884 TCTTGTGCATGGAAATTTTCATCATA 58.161 30.769 9.13 6.62 0.00 2.15
474 497 8.312564 TCTTGTGCATGGAAATTTTCATCATAA 58.687 29.630 9.13 12.62 0.00 1.90
475 498 8.843885 TTGTGCATGGAAATTTTCATCATAAA 57.156 26.923 9.13 7.20 0.00 1.40
476 499 8.843885 TGTGCATGGAAATTTTCATCATAAAA 57.156 26.923 9.13 0.00 33.15 1.52
477 500 9.451002 TGTGCATGGAAATTTTCATCATAAAAT 57.549 25.926 9.13 0.00 40.02 1.82
478 501 9.925268 GTGCATGGAAATTTTCATCATAAAATC 57.075 29.630 9.13 0.00 37.93 2.17
479 502 9.668497 TGCATGGAAATTTTCATCATAAAATCA 57.332 25.926 9.13 0.00 37.93 2.57
480 503 9.925268 GCATGGAAATTTTCATCATAAAATCAC 57.075 29.630 9.13 0.00 37.93 3.06
492 515 9.192642 TCATCATAAAATCACATTCATGGAAGT 57.807 29.630 0.00 0.00 0.00 3.01
493 516 9.459640 CATCATAAAATCACATTCATGGAAGTC 57.540 33.333 0.00 0.00 0.00 3.01
494 517 7.696755 TCATAAAATCACATTCATGGAAGTCG 58.303 34.615 0.00 0.00 0.00 4.18
495 518 5.964958 AAAATCACATTCATGGAAGTCGT 57.035 34.783 0.00 0.00 0.00 4.34
496 519 4.952262 AATCACATTCATGGAAGTCGTG 57.048 40.909 0.00 0.00 0.00 4.35
497 520 2.076100 TCACATTCATGGAAGTCGTGC 58.924 47.619 0.00 0.00 32.54 5.34
498 521 1.131126 CACATTCATGGAAGTCGTGCC 59.869 52.381 0.00 0.00 32.54 5.01
499 522 1.271325 ACATTCATGGAAGTCGTGCCA 60.271 47.619 0.00 0.00 38.78 4.92
500 523 1.811965 CATTCATGGAAGTCGTGCCAA 59.188 47.619 0.00 0.00 37.78 4.52
501 524 1.974265 TTCATGGAAGTCGTGCCAAA 58.026 45.000 0.00 0.00 37.78 3.28
502 525 1.974265 TCATGGAAGTCGTGCCAAAA 58.026 45.000 0.00 0.00 37.78 2.44
503 526 2.302260 TCATGGAAGTCGTGCCAAAAA 58.698 42.857 0.00 0.00 37.78 1.94
527 550 7.425577 AAACAAAATTAGAGCTCCAAAATGC 57.574 32.000 10.93 0.00 0.00 3.56
528 551 6.350629 ACAAAATTAGAGCTCCAAAATGCT 57.649 33.333 10.93 0.00 42.82 3.79
529 552 6.762333 ACAAAATTAGAGCTCCAAAATGCTT 58.238 32.000 10.93 3.55 39.91 3.91
530 553 7.219322 ACAAAATTAGAGCTCCAAAATGCTTT 58.781 30.769 10.93 4.40 39.91 3.51
531 554 7.716560 ACAAAATTAGAGCTCCAAAATGCTTTT 59.283 29.630 10.93 3.86 39.91 2.27
533 556 5.789643 TTAGAGCTCCAAAATGCTTTTGT 57.210 34.783 10.93 0.00 46.53 2.83
534 557 6.892658 TTAGAGCTCCAAAATGCTTTTGTA 57.107 33.333 10.93 4.47 46.53 2.41
535 558 5.789643 AGAGCTCCAAAATGCTTTTGTAA 57.210 34.783 10.93 6.90 46.53 2.41
536 559 5.776744 AGAGCTCCAAAATGCTTTTGTAAG 58.223 37.500 10.93 13.56 46.53 2.34
537 560 5.302823 AGAGCTCCAAAATGCTTTTGTAAGT 59.697 36.000 10.93 7.50 46.53 2.24
538 561 6.490040 AGAGCTCCAAAATGCTTTTGTAAGTA 59.510 34.615 10.93 0.00 46.53 2.24
539 562 7.014230 AGAGCTCCAAAATGCTTTTGTAAGTAA 59.986 33.333 10.93 0.00 46.53 2.24
540 563 6.923508 AGCTCCAAAATGCTTTTGTAAGTAAC 59.076 34.615 15.52 5.59 46.53 2.50
541 564 6.699642 GCTCCAAAATGCTTTTGTAAGTAACA 59.300 34.615 15.52 0.00 46.53 2.41
542 565 7.384932 GCTCCAAAATGCTTTTGTAAGTAACAT 59.615 33.333 15.52 0.00 46.53 2.71
543 566 9.260002 CTCCAAAATGCTTTTGTAAGTAACATT 57.740 29.630 15.52 0.00 46.53 2.71
544 567 9.606631 TCCAAAATGCTTTTGTAAGTAACATTT 57.393 25.926 15.52 0.00 46.53 2.32
550 573 9.683069 ATGCTTTTGTAAGTAACATTTTCAGAG 57.317 29.630 0.00 0.00 38.10 3.35
551 574 7.647715 TGCTTTTGTAAGTAACATTTTCAGAGC 59.352 33.333 0.00 0.00 38.10 4.09
552 575 7.647715 GCTTTTGTAAGTAACATTTTCAGAGCA 59.352 33.333 0.00 0.00 38.10 4.26
553 576 9.683069 CTTTTGTAAGTAACATTTTCAGAGCAT 57.317 29.630 0.00 0.00 38.10 3.79
554 577 9.677567 TTTTGTAAGTAACATTTTCAGAGCATC 57.322 29.630 0.00 0.00 38.10 3.91
555 578 7.060600 TGTAAGTAACATTTTCAGAGCATCG 57.939 36.000 0.00 0.00 34.21 3.84
556 579 6.871492 TGTAAGTAACATTTTCAGAGCATCGA 59.129 34.615 0.00 0.00 34.21 3.59
557 580 6.992063 AAGTAACATTTTCAGAGCATCGAT 57.008 33.333 0.00 0.00 42.67 3.59
558 581 6.992063 AGTAACATTTTCAGAGCATCGATT 57.008 33.333 0.00 0.00 42.67 3.34
559 582 7.383102 AGTAACATTTTCAGAGCATCGATTT 57.617 32.000 0.00 0.00 42.67 2.17
560 583 7.820648 AGTAACATTTTCAGAGCATCGATTTT 58.179 30.769 0.00 0.00 42.67 1.82
561 584 6.939551 AACATTTTCAGAGCATCGATTTTG 57.060 33.333 0.00 0.00 42.67 2.44
562 585 6.017400 ACATTTTCAGAGCATCGATTTTGT 57.983 33.333 0.00 0.00 42.67 2.83
563 586 6.449698 ACATTTTCAGAGCATCGATTTTGTT 58.550 32.000 0.00 0.00 42.67 2.83
564 587 6.925165 ACATTTTCAGAGCATCGATTTTGTTT 59.075 30.769 0.00 0.00 42.67 2.83
565 588 7.439056 ACATTTTCAGAGCATCGATTTTGTTTT 59.561 29.630 0.00 0.00 42.67 2.43
566 589 7.769272 TTTTCAGAGCATCGATTTTGTTTTT 57.231 28.000 0.00 0.00 42.67 1.94
585 608 3.383698 TTTTTACCACACCTTCCACCA 57.616 42.857 0.00 0.00 0.00 4.17
586 609 3.383698 TTTTACCACACCTTCCACCAA 57.616 42.857 0.00 0.00 0.00 3.67
587 610 3.603965 TTTACCACACCTTCCACCAAT 57.396 42.857 0.00 0.00 0.00 3.16
588 611 2.577606 TACCACACCTTCCACCAATG 57.422 50.000 0.00 0.00 0.00 2.82
589 612 0.555769 ACCACACCTTCCACCAATGT 59.444 50.000 0.00 0.00 0.00 2.71
590 613 0.961019 CCACACCTTCCACCAATGTG 59.039 55.000 0.00 0.00 42.39 3.21
591 614 1.478471 CCACACCTTCCACCAATGTGA 60.478 52.381 4.30 0.00 45.76 3.58
592 615 2.517959 CACACCTTCCACCAATGTGAT 58.482 47.619 0.00 0.00 45.76 3.06
593 616 2.892852 CACACCTTCCACCAATGTGATT 59.107 45.455 0.00 0.00 45.76 2.57
594 617 3.321682 CACACCTTCCACCAATGTGATTT 59.678 43.478 0.00 0.00 45.76 2.17
595 618 3.573967 ACACCTTCCACCAATGTGATTTC 59.426 43.478 0.00 0.00 45.76 2.17
596 619 2.819608 ACCTTCCACCAATGTGATTTCG 59.180 45.455 0.00 0.00 45.76 3.46
597 620 2.819608 CCTTCCACCAATGTGATTTCGT 59.180 45.455 0.00 0.00 45.76 3.85
598 621 3.366273 CCTTCCACCAATGTGATTTCGTG 60.366 47.826 0.00 0.00 45.76 4.35
599 622 3.133141 TCCACCAATGTGATTTCGTGA 57.867 42.857 0.00 0.00 45.76 4.35
600 623 3.684908 TCCACCAATGTGATTTCGTGAT 58.315 40.909 0.00 0.00 45.76 3.06
601 624 3.439825 TCCACCAATGTGATTTCGTGATG 59.560 43.478 0.00 0.00 45.76 3.07
602 625 3.439825 CCACCAATGTGATTTCGTGATGA 59.560 43.478 0.00 0.00 45.76 2.92
603 626 4.082841 CCACCAATGTGATTTCGTGATGAA 60.083 41.667 0.00 0.00 45.76 2.57
604 627 5.459768 CACCAATGTGATTTCGTGATGAAA 58.540 37.500 1.88 1.88 45.76 2.69
615 638 4.733972 TCGTGATGAAATTTTACGTGCA 57.266 36.364 0.00 0.00 36.28 4.57
616 639 4.459606 TCGTGATGAAATTTTACGTGCAC 58.540 39.130 6.82 6.82 36.28 4.57
617 640 4.024809 TCGTGATGAAATTTTACGTGCACA 60.025 37.500 18.64 0.00 36.28 4.57
618 641 4.672862 CGTGATGAAATTTTACGTGCACAA 59.327 37.500 18.64 3.45 0.00 3.33
619 642 5.385918 CGTGATGAAATTTTACGTGCACAAC 60.386 40.000 18.64 0.00 0.00 3.32
620 643 5.457148 GTGATGAAATTTTACGTGCACAACA 59.543 36.000 18.64 0.00 0.00 3.33
621 644 6.020281 GTGATGAAATTTTACGTGCACAACAA 60.020 34.615 18.64 4.10 0.00 2.83
622 645 6.531594 TGATGAAATTTTACGTGCACAACAAA 59.468 30.769 18.64 11.77 0.00 2.83
623 646 6.083925 TGAAATTTTACGTGCACAACAAAC 57.916 33.333 18.64 2.63 0.00 2.93
624 647 5.633601 TGAAATTTTACGTGCACAACAAACA 59.366 32.000 18.64 5.00 0.00 2.83
625 648 6.311445 TGAAATTTTACGTGCACAACAAACAT 59.689 30.769 18.64 4.51 0.00 2.71
626 649 6.654793 AATTTTACGTGCACAACAAACATT 57.345 29.167 18.64 11.51 0.00 2.71
627 650 6.654793 ATTTTACGTGCACAACAAACATTT 57.345 29.167 18.64 0.00 0.00 2.32
628 651 5.441700 TTTACGTGCACAACAAACATTTG 57.558 34.783 18.64 2.77 43.62 2.32
644 667 8.978564 CAAACATTTGTATAAGTATGCCACAA 57.021 30.769 0.00 0.00 33.59 3.33
645 668 9.416794 CAAACATTTGTATAAGTATGCCACAAA 57.583 29.630 0.00 0.00 41.70 2.83
646 669 9.988815 AAACATTTGTATAAGTATGCCACAAAA 57.011 25.926 2.70 0.00 41.07 2.44
647 670 9.988815 AACATTTGTATAAGTATGCCACAAAAA 57.011 25.926 2.70 0.00 41.07 1.94
706 729 7.883391 TTTTATTTTACTGTTCACACCAGGA 57.117 32.000 0.00 0.00 34.16 3.86
707 730 7.504924 TTTATTTTACTGTTCACACCAGGAG 57.495 36.000 0.00 0.00 34.16 3.69
708 731 2.543777 TTACTGTTCACACCAGGAGC 57.456 50.000 0.00 0.00 34.16 4.70
709 732 1.419381 TACTGTTCACACCAGGAGCA 58.581 50.000 0.00 0.00 34.16 4.26
710 733 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
711 734 1.143684 ACTGTTCACACCAGGAGCATT 59.856 47.619 0.00 0.00 34.16 3.56
712 735 2.233271 CTGTTCACACCAGGAGCATTT 58.767 47.619 0.00 0.00 0.00 2.32
713 736 1.955778 TGTTCACACCAGGAGCATTTG 59.044 47.619 0.00 0.00 0.00 2.32
714 737 0.961019 TTCACACCAGGAGCATTTGC 59.039 50.000 0.00 0.00 42.49 3.68
728 751 4.503741 GCATTTGCTCCTTTGTGTAGAA 57.496 40.909 0.00 0.00 38.21 2.10
729 752 4.870363 GCATTTGCTCCTTTGTGTAGAAA 58.130 39.130 0.00 0.00 38.21 2.52
730 753 4.681483 GCATTTGCTCCTTTGTGTAGAAAC 59.319 41.667 0.00 0.00 38.21 2.78
731 754 5.507985 GCATTTGCTCCTTTGTGTAGAAACT 60.508 40.000 0.00 0.00 38.21 2.66
732 755 5.751243 TTTGCTCCTTTGTGTAGAAACTC 57.249 39.130 0.00 0.00 0.00 3.01
733 756 3.740115 TGCTCCTTTGTGTAGAAACTCC 58.260 45.455 0.00 0.00 0.00 3.85
734 757 3.135712 TGCTCCTTTGTGTAGAAACTCCA 59.864 43.478 0.00 0.00 0.00 3.86
735 758 3.498777 GCTCCTTTGTGTAGAAACTCCAC 59.501 47.826 0.00 0.00 0.00 4.02
736 759 3.724374 TCCTTTGTGTAGAAACTCCACG 58.276 45.455 0.00 0.00 31.75 4.94
737 760 3.133362 TCCTTTGTGTAGAAACTCCACGT 59.867 43.478 0.00 0.00 31.75 4.49
738 761 3.493503 CCTTTGTGTAGAAACTCCACGTC 59.506 47.826 0.00 0.00 31.75 4.34
739 762 2.806608 TGTGTAGAAACTCCACGTCC 57.193 50.000 0.00 0.00 31.75 4.79
740 763 1.342174 TGTGTAGAAACTCCACGTCCC 59.658 52.381 0.00 0.00 31.75 4.46
741 764 0.599558 TGTAGAAACTCCACGTCCCG 59.400 55.000 0.00 0.00 0.00 5.14
742 765 0.108945 GTAGAAACTCCACGTCCCGG 60.109 60.000 0.00 0.00 0.00 5.73
743 766 1.880819 TAGAAACTCCACGTCCCGGC 61.881 60.000 0.00 0.00 0.00 6.13
744 767 3.524648 GAAACTCCACGTCCCGGCA 62.525 63.158 0.00 0.00 0.00 5.69
745 768 3.530910 AAACTCCACGTCCCGGCAG 62.531 63.158 0.00 0.00 0.00 4.85
757 780 4.711949 CGGCAGCAAGGCAGGAGT 62.712 66.667 0.00 0.00 44.47 3.85
766 789 1.559682 CAAGGCAGGAGTAGGGCTAAA 59.440 52.381 0.00 0.00 39.21 1.85
784 807 5.584251 GGCTAAAAAGAAGACAGATCAGAGG 59.416 44.000 0.00 0.00 0.00 3.69
850 877 4.256180 GCCGGCCCATCTACCCTG 62.256 72.222 18.11 0.00 0.00 4.45
855 882 2.919043 CCCATCTACCCTGGCCAC 59.081 66.667 0.00 0.00 32.08 5.01
903 932 1.273609 ACTCCTACCTGCATGGGTACA 60.274 52.381 0.78 0.00 40.48 2.90
912 941 3.511146 CCTGCATGGGTACAAAAACTGAT 59.489 43.478 0.00 0.00 0.00 2.90
937 966 2.280254 CACGTACCCGCACCAACA 60.280 61.111 0.00 0.00 37.70 3.33
1050 1086 0.663688 GCTCCTCAAGATGCATGCTG 59.336 55.000 20.33 8.87 0.00 4.41
1052 1088 0.255033 TCCTCAAGATGCATGCTGCT 59.745 50.000 20.33 12.95 45.31 4.24
1053 1089 0.382158 CCTCAAGATGCATGCTGCTG 59.618 55.000 20.33 10.84 45.31 4.41
1054 1090 0.248661 CTCAAGATGCATGCTGCTGC 60.249 55.000 20.33 8.89 45.31 5.25
1070 1106 4.680708 GCTGCTGCATAGGTAGAAGTACAA 60.681 45.833 11.11 0.00 35.00 2.41
1072 1108 4.709886 TGCTGCATAGGTAGAAGTACAAGA 59.290 41.667 0.00 0.00 0.00 3.02
1074 1110 5.593010 CTGCATAGGTAGAAGTACAAGACC 58.407 45.833 0.00 0.00 0.00 3.85
1078 1114 2.042162 AGGTAGAAGTACAAGACCGGGA 59.958 50.000 6.32 0.00 35.24 5.14
1079 1115 2.165234 GGTAGAAGTACAAGACCGGGAC 59.835 54.545 6.32 0.00 0.00 4.46
1080 1116 2.305858 AGAAGTACAAGACCGGGACT 57.694 50.000 6.32 1.17 0.00 3.85
1081 1117 1.893801 AGAAGTACAAGACCGGGACTG 59.106 52.381 6.32 1.31 0.00 3.51
1082 1118 1.617357 GAAGTACAAGACCGGGACTGT 59.383 52.381 6.32 8.15 0.00 3.55
1083 1119 0.966920 AGTACAAGACCGGGACTGTG 59.033 55.000 6.32 8.59 0.00 3.66
1084 1120 0.677842 GTACAAGACCGGGACTGTGT 59.322 55.000 6.32 13.32 0.00 3.72
1085 1121 1.888512 GTACAAGACCGGGACTGTGTA 59.111 52.381 6.32 12.45 0.00 2.90
1086 1122 0.677842 ACAAGACCGGGACTGTGTAC 59.322 55.000 6.32 0.00 0.00 2.90
1087 1123 0.388134 CAAGACCGGGACTGTGTACG 60.388 60.000 6.32 0.00 0.00 3.67
1088 1124 0.825010 AAGACCGGGACTGTGTACGT 60.825 55.000 6.32 0.00 0.00 3.57
1089 1125 0.036732 AGACCGGGACTGTGTACGTA 59.963 55.000 6.32 0.00 0.00 3.57
1336 1391 1.115467 GCGAAGATGAGGAGGAGGAA 58.885 55.000 0.00 0.00 0.00 3.36
1339 1397 3.027412 CGAAGATGAGGAGGAGGAAGAA 58.973 50.000 0.00 0.00 0.00 2.52
1349 1407 2.237643 GAGGAGGAAGAAGGGGAAGAAC 59.762 54.545 0.00 0.00 0.00 3.01
1354 1412 3.009584 AGGAAGAAGGGGAAGAACATCAC 59.990 47.826 0.00 0.00 0.00 3.06
1483 1541 4.148825 AGCGACATGGACGGCCTC 62.149 66.667 9.82 0.00 34.31 4.70
1903 1961 2.743928 CAGGTGCTGGAGAACGCC 60.744 66.667 0.00 0.00 36.68 5.68
2116 2174 3.137544 TGAGCAGGGTGGAAGAAGTAAAA 59.862 43.478 0.00 0.00 0.00 1.52
2155 2213 2.048127 GTGGTGACGGAGCTGGTC 60.048 66.667 0.00 0.00 34.99 4.02
2275 2333 1.533711 CATGGGGGTCATCCAGTCC 59.466 63.158 0.00 0.00 37.75 3.85
2320 2378 0.031414 TCCCCTACTCCTACAAGGCC 60.031 60.000 0.00 0.00 34.61 5.19
2323 2381 1.400530 CCTACTCCTACAAGGCCCGG 61.401 65.000 0.00 0.00 34.61 5.73
2404 2462 3.973267 GACCAGCTCCGACGTGCTC 62.973 68.421 9.21 0.00 36.71 4.26
2540 2598 4.493747 GGTACTTCGCCGCGCTCT 62.494 66.667 8.21 0.00 0.00 4.09
2722 2780 1.445095 CAAGGGCCTCATCCTCTCG 59.555 63.158 6.46 0.00 32.59 4.04
2737 2795 4.492160 TCGGCCGTCATGTCGCTC 62.492 66.667 27.15 1.12 0.00 5.03
2915 2978 4.155280 GCGCCTAAGTTATTTTCCTGACAA 59.845 41.667 0.00 0.00 0.00 3.18
2938 3001 7.389053 ACAACCATTTCTTACTCAGATGTCTTC 59.611 37.037 0.00 0.00 0.00 2.87
2963 3034 1.173913 ACACCCCTTTGATTTAGCGC 58.826 50.000 0.00 0.00 0.00 5.92
3024 3095 7.607607 GCATATCTACATCCAACCATCATTGTA 59.392 37.037 0.00 0.00 0.00 2.41
3078 3152 6.698766 AGTGAAATTCAAGTTTTGTCATCAGC 59.301 34.615 0.00 0.00 0.00 4.26
3115 3192 5.538053 TCATCAGCCATTGGAAGTTGTAAAA 59.462 36.000 6.95 0.00 0.00 1.52
3116 3193 5.860941 TCAGCCATTGGAAGTTGTAAAAA 57.139 34.783 6.95 0.00 0.00 1.94
3117 3194 6.418057 TCAGCCATTGGAAGTTGTAAAAAT 57.582 33.333 6.95 0.00 0.00 1.82
3119 3196 5.639082 CAGCCATTGGAAGTTGTAAAAATCC 59.361 40.000 6.95 0.00 34.39 3.01
3120 3197 5.306678 AGCCATTGGAAGTTGTAAAAATCCA 59.693 36.000 6.95 0.00 40.02 3.41
3183 3279 4.278170 CCTGACAAGTCCAGCAAATTACAA 59.722 41.667 0.00 0.00 0.00 2.41
3243 3339 4.217118 GCATCTCACCAGTTTTGTCAAGAT 59.783 41.667 0.00 0.00 0.00 2.40
3257 3353 5.811562 TTGTCAAGATTGGCAGAGAGCAAC 61.812 45.833 0.00 0.00 44.47 4.17
3274 3371 1.474077 CAACTGGGGTTATGAGCAAGC 59.526 52.381 0.00 0.00 33.88 4.01
3275 3372 0.995024 ACTGGGGTTATGAGCAAGCT 59.005 50.000 0.00 0.00 0.00 3.74
3283 3380 3.366374 GGTTATGAGCAAGCTGACAAACC 60.366 47.826 0.00 5.64 0.00 3.27
3284 3381 1.251251 ATGAGCAAGCTGACAAACCC 58.749 50.000 0.00 0.00 0.00 4.11
3285 3382 0.106769 TGAGCAAGCTGACAAACCCA 60.107 50.000 0.00 0.00 0.00 4.51
3286 3383 0.312102 GAGCAAGCTGACAAACCCAC 59.688 55.000 0.00 0.00 0.00 4.61
3288 3385 1.654220 CAAGCTGACAAACCCACGG 59.346 57.895 0.00 0.00 0.00 4.94
3289 3386 0.817634 CAAGCTGACAAACCCACGGA 60.818 55.000 0.00 0.00 0.00 4.69
3290 3387 0.110486 AAGCTGACAAACCCACGGAT 59.890 50.000 0.00 0.00 0.00 4.18
3291 3388 0.110486 AGCTGACAAACCCACGGATT 59.890 50.000 0.00 0.00 0.00 3.01
3292 3389 1.349688 AGCTGACAAACCCACGGATTA 59.650 47.619 0.00 0.00 0.00 1.75
3293 3390 2.156098 GCTGACAAACCCACGGATTAA 58.844 47.619 0.00 0.00 0.00 1.40
3294 3391 2.095415 GCTGACAAACCCACGGATTAAC 60.095 50.000 0.00 0.00 0.00 2.01
3304 3401 4.161001 ACCCACGGATTAACTAACTACCAG 59.839 45.833 0.00 0.00 0.00 4.00
3389 3486 6.070653 TCCTACTATCGACCTAGAGATTCCTC 60.071 46.154 0.09 0.00 39.72 3.71
3397 3494 5.184287 CGACCTAGAGATTCCTCCTTTATCC 59.816 48.000 0.00 0.00 40.30 2.59
3461 3563 1.338105 CGTGAACCTCTCCAGCAATGA 60.338 52.381 0.00 0.00 0.00 2.57
3466 3568 3.618690 ACCTCTCCAGCAATGACTTAC 57.381 47.619 0.00 0.00 0.00 2.34
3485 3587 1.425448 ACCCAGGCTTCTAGCTGTTTT 59.575 47.619 0.00 0.00 41.99 2.43
3486 3588 1.815003 CCCAGGCTTCTAGCTGTTTTG 59.185 52.381 0.00 0.00 41.99 2.44
3487 3589 2.508526 CCAGGCTTCTAGCTGTTTTGT 58.491 47.619 0.00 0.00 41.99 2.83
3488 3590 3.559171 CCCAGGCTTCTAGCTGTTTTGTA 60.559 47.826 0.00 0.00 41.99 2.41
3489 3591 3.437049 CCAGGCTTCTAGCTGTTTTGTAC 59.563 47.826 0.00 0.00 41.99 2.90
3490 3592 4.319177 CAGGCTTCTAGCTGTTTTGTACT 58.681 43.478 0.00 0.00 41.99 2.73
3491 3593 4.390297 CAGGCTTCTAGCTGTTTTGTACTC 59.610 45.833 0.00 0.00 41.99 2.59
3492 3594 3.685272 GGCTTCTAGCTGTTTTGTACTCC 59.315 47.826 0.00 0.00 41.99 3.85
3493 3595 3.685272 GCTTCTAGCTGTTTTGTACTCCC 59.315 47.826 0.00 0.00 38.45 4.30
3494 3596 4.563786 GCTTCTAGCTGTTTTGTACTCCCT 60.564 45.833 0.00 0.00 38.45 4.20
3495 3597 4.803098 TCTAGCTGTTTTGTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
3496 3598 2.861147 AGCTGTTTTGTACTCCCTCC 57.139 50.000 0.00 0.00 0.00 4.30
3497 3599 1.002087 AGCTGTTTTGTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
3498 3600 1.270678 GCTGTTTTGTACTCCCTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
3499 3601 2.809299 GCTGTTTTGTACTCCCTCCGTT 60.809 50.000 0.00 0.00 0.00 4.44
3500 3602 3.064931 CTGTTTTGTACTCCCTCCGTTC 58.935 50.000 0.00 0.00 0.00 3.95
3501 3603 2.224354 TGTTTTGTACTCCCTCCGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
3502 3604 2.019807 TTTGTACTCCCTCCGTTCCT 57.980 50.000 0.00 0.00 0.00 3.36
3503 3605 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
3504 3606 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3505 3607 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3506 3608 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3507 3609 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3508 3610 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3509 3611 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3510 3612 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3511 3613 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3512 3614 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3513 3615 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3514 3616 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3515 3617 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3516 3618 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3517 3619 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3518 3620 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3519 3621 8.712285 TCCGTTCCTAAATATAAGTCTTTGTG 57.288 34.615 0.00 0.00 0.00 3.33
3520 3622 7.767198 TCCGTTCCTAAATATAAGTCTTTGTGG 59.233 37.037 0.00 0.00 0.00 4.17
3521 3623 7.767198 CCGTTCCTAAATATAAGTCTTTGTGGA 59.233 37.037 0.00 0.00 0.00 4.02
3522 3624 8.818057 CGTTCCTAAATATAAGTCTTTGTGGAG 58.182 37.037 0.00 0.00 0.00 3.86
3523 3625 9.886132 GTTCCTAAATATAAGTCTTTGTGGAGA 57.114 33.333 0.00 0.00 0.00 3.71
3547 3649 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
3548 3650 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
3549 3651 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
3550 3652 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
3551 3653 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
3552 3654 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
3553 3655 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
3554 3656 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
3555 3657 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
3556 3658 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
3557 3659 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3558 3660 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
3559 3661 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
3560 3662 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
3561 3663 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
3562 3664 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
3563 3665 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
3564 3666 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
3565 3667 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
3566 3668 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
3567 3669 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
3568 3670 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
3569 3671 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
3570 3672 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
3571 3673 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
3601 3703 8.747538 TGTATCTATATACATCTGTATGCGGT 57.252 34.615 12.10 1.36 42.40 5.68
3602 3704 9.185680 TGTATCTATATACATCTGTATGCGGTT 57.814 33.333 12.10 0.00 42.40 4.44
3609 3711 9.803315 ATATACATCTGTATGCGGTTTATAGTG 57.197 33.333 12.10 0.00 41.03 2.74
3610 3712 5.297547 ACATCTGTATGCGGTTTATAGTGG 58.702 41.667 0.00 0.00 36.50 4.00
3611 3713 5.069914 ACATCTGTATGCGGTTTATAGTGGA 59.930 40.000 0.00 0.00 36.50 4.02
3612 3714 5.601583 TCTGTATGCGGTTTATAGTGGAA 57.398 39.130 0.00 0.00 0.00 3.53
3613 3715 6.169557 TCTGTATGCGGTTTATAGTGGAAT 57.830 37.500 0.00 0.00 0.00 3.01
3614 3716 6.220930 TCTGTATGCGGTTTATAGTGGAATC 58.779 40.000 0.00 0.00 0.00 2.52
3615 3717 6.041637 TCTGTATGCGGTTTATAGTGGAATCT 59.958 38.462 0.00 0.00 0.00 2.40
3616 3718 6.220930 TGTATGCGGTTTATAGTGGAATCTC 58.779 40.000 0.00 0.00 0.00 2.75
3617 3719 5.552870 ATGCGGTTTATAGTGGAATCTCT 57.447 39.130 0.00 0.00 0.00 3.10
3618 3720 6.665992 ATGCGGTTTATAGTGGAATCTCTA 57.334 37.500 0.00 0.00 0.00 2.43
3619 3721 5.839621 TGCGGTTTATAGTGGAATCTCTAC 58.160 41.667 0.00 0.00 0.00 2.59
3620 3722 5.361571 TGCGGTTTATAGTGGAATCTCTACA 59.638 40.000 0.00 0.00 29.47 2.74
3621 3723 6.127281 TGCGGTTTATAGTGGAATCTCTACAA 60.127 38.462 0.00 0.00 29.47 2.41
3622 3724 6.759827 GCGGTTTATAGTGGAATCTCTACAAA 59.240 38.462 0.00 0.00 29.47 2.83
3623 3725 7.042658 GCGGTTTATAGTGGAATCTCTACAAAG 60.043 40.741 0.00 0.00 29.47 2.77
3624 3726 8.195436 CGGTTTATAGTGGAATCTCTACAAAGA 58.805 37.037 0.00 0.00 29.47 2.52
3625 3727 9.315525 GGTTTATAGTGGAATCTCTACAAAGAC 57.684 37.037 0.00 0.00 29.47 3.01
3630 3732 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
3631 3733 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
3632 3734 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
3633 3735 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
3639 3741 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3640 3742 9.706691 CTCTACAAAGACTTACATTTAGGAACA 57.293 33.333 0.00 0.00 0.00 3.18
3641 3743 9.706691 TCTACAAAGACTTACATTTAGGAACAG 57.293 33.333 0.00 0.00 0.00 3.16
3642 3744 9.706691 CTACAAAGACTTACATTTAGGAACAGA 57.293 33.333 0.00 0.00 0.00 3.41
3643 3745 8.608844 ACAAAGACTTACATTTAGGAACAGAG 57.391 34.615 0.00 0.00 0.00 3.35
3644 3746 7.661847 ACAAAGACTTACATTTAGGAACAGAGG 59.338 37.037 0.00 0.00 0.00 3.69
3645 3747 6.301169 AGACTTACATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
3646 3748 6.023603 AGACTTACATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
3651 3753 9.144298 CTTACATTTAGGAACAGAGGGAGTATA 57.856 37.037 0.00 0.00 0.00 1.47
3676 3778 4.156556 GTGCTCTGTGGCTCAAATTTATCA 59.843 41.667 0.00 0.00 0.00 2.15
3677 3779 4.397103 TGCTCTGTGGCTCAAATTTATCAG 59.603 41.667 0.00 0.00 0.00 2.90
3678 3780 4.637534 GCTCTGTGGCTCAAATTTATCAGA 59.362 41.667 0.00 0.00 0.00 3.27
3681 3783 4.272489 TGTGGCTCAAATTTATCAGAGGG 58.728 43.478 5.65 0.00 0.00 4.30
3682 3784 4.018506 TGTGGCTCAAATTTATCAGAGGGA 60.019 41.667 5.65 0.00 0.00 4.20
3683 3785 4.578105 GTGGCTCAAATTTATCAGAGGGAG 59.422 45.833 5.65 0.85 0.00 4.30
3684 3786 4.228210 TGGCTCAAATTTATCAGAGGGAGT 59.772 41.667 5.65 0.00 0.00 3.85
3686 3788 6.101734 TGGCTCAAATTTATCAGAGGGAGTAT 59.898 38.462 5.65 0.00 0.00 2.12
3688 3790 8.325046 GGCTCAAATTTATCAGAGGGAGTATAT 58.675 37.037 5.65 0.00 0.00 0.86
3689 3791 9.160496 GCTCAAATTTATCAGAGGGAGTATATG 57.840 37.037 5.65 0.00 0.00 1.78
3692 3794 8.725148 CAAATTTATCAGAGGGAGTATATGTGC 58.275 37.037 0.00 0.00 0.00 4.57
3730 3848 6.815142 AGCAATGCTGAATTAGTGATTTTTCC 59.185 34.615 7.07 0.00 37.57 3.13
3732 3850 7.279313 GCAATGCTGAATTAGTGATTTTTCCAT 59.721 33.333 0.00 0.00 0.00 3.41
3735 3853 7.894708 TGCTGAATTAGTGATTTTTCCATTGA 58.105 30.769 0.00 0.00 0.00 2.57
3736 3854 8.030692 TGCTGAATTAGTGATTTTTCCATTGAG 58.969 33.333 0.00 0.00 0.00 3.02
3737 3855 8.031277 GCTGAATTAGTGATTTTTCCATTGAGT 58.969 33.333 0.00 0.00 0.00 3.41
3738 3856 9.918630 CTGAATTAGTGATTTTTCCATTGAGTT 57.081 29.630 0.00 0.00 0.00 3.01
3741 3859 9.492973 AATTAGTGATTTTTCCATTGAGTTTGG 57.507 29.630 0.00 0.00 35.45 3.28
3742 3860 6.729690 AGTGATTTTTCCATTGAGTTTGGA 57.270 33.333 0.00 0.00 41.50 3.53
3743 3861 7.307131 AGTGATTTTTCCATTGAGTTTGGAT 57.693 32.000 0.00 0.00 42.69 3.41
3744 3862 7.381323 AGTGATTTTTCCATTGAGTTTGGATC 58.619 34.615 0.00 0.00 42.69 3.36
3745 3863 6.591448 GTGATTTTTCCATTGAGTTTGGATCC 59.409 38.462 4.20 4.20 42.69 3.36
3746 3864 6.269538 TGATTTTTCCATTGAGTTTGGATCCA 59.730 34.615 11.44 11.44 42.69 3.41
3747 3865 6.684897 TTTTTCCATTGAGTTTGGATCCAT 57.315 33.333 17.06 0.00 42.69 3.41
3748 3866 5.664294 TTTCCATTGAGTTTGGATCCATG 57.336 39.130 17.06 8.82 42.69 3.66
3749 3867 3.025978 TCCATTGAGTTTGGATCCATGC 58.974 45.455 17.06 11.51 38.35 4.06
3750 3868 2.761767 CCATTGAGTTTGGATCCATGCA 59.238 45.455 17.06 8.67 36.26 3.96
3751 3869 3.196039 CCATTGAGTTTGGATCCATGCAA 59.804 43.478 17.06 16.65 36.26 4.08
3752 3870 4.141801 CCATTGAGTTTGGATCCATGCAAT 60.142 41.667 17.06 18.02 37.94 3.56
3753 3871 4.724074 TTGAGTTTGGATCCATGCAATC 57.276 40.909 17.06 11.90 37.94 2.67
3754 3872 3.699413 TGAGTTTGGATCCATGCAATCA 58.301 40.909 17.06 14.34 37.94 2.57
3762 3880 4.656575 TGGATCCATGCAATCAATTTGGAT 59.343 37.500 11.44 14.16 46.16 3.41
3771 3893 5.352846 TGCAATCAATTTGGATTCATGCTTG 59.647 36.000 0.00 0.00 35.37 4.01
3791 3913 2.627699 TGCTTGGTCCATCTTTTGGTTC 59.372 45.455 0.00 0.00 46.52 3.62
3802 3927 7.809806 GTCCATCTTTTGGTTCTTGTTAATGAG 59.190 37.037 0.00 0.00 46.52 2.90
3854 3979 9.513906 TGAACATCCATTTTCACTGTTCTTATA 57.486 29.630 13.08 0.00 43.72 0.98
3876 4002 9.618890 TTATAATATTCTCAGCCATGCCTATTC 57.381 33.333 0.00 0.00 0.00 1.75
3877 4003 5.775813 ATATTCTCAGCCATGCCTATTCT 57.224 39.130 0.00 0.00 0.00 2.40
3980 4109 6.426937 GCTGAAACAATGACTAGGAAACACTA 59.573 38.462 0.00 0.00 0.00 2.74
3981 4110 7.571428 GCTGAAACAATGACTAGGAAACACTAC 60.571 40.741 0.00 0.00 0.00 2.73
3988 4117 4.100344 TGACTAGGAAACACTACTTGCACA 59.900 41.667 0.00 0.00 0.00 4.57
3989 4118 4.377897 ACTAGGAAACACTACTTGCACAC 58.622 43.478 0.00 0.00 0.00 3.82
3990 4119 2.572290 AGGAAACACTACTTGCACACC 58.428 47.619 0.00 0.00 0.00 4.16
3991 4120 1.607148 GGAAACACTACTTGCACACCC 59.393 52.381 0.00 0.00 0.00 4.61
3992 4121 1.607148 GAAACACTACTTGCACACCCC 59.393 52.381 0.00 0.00 0.00 4.95
3993 4122 0.534203 AACACTACTTGCACACCCCG 60.534 55.000 0.00 0.00 0.00 5.73
3994 4123 1.369692 CACTACTTGCACACCCCGA 59.630 57.895 0.00 0.00 0.00 5.14
3995 4124 0.250124 CACTACTTGCACACCCCGAA 60.250 55.000 0.00 0.00 0.00 4.30
3996 4125 0.034896 ACTACTTGCACACCCCGAAG 59.965 55.000 0.00 0.00 0.00 3.79
4038 4167 3.076621 TGCAAACCACATAAGAGCAGAG 58.923 45.455 0.00 0.00 0.00 3.35
4039 4168 3.077359 GCAAACCACATAAGAGCAGAGT 58.923 45.455 0.00 0.00 0.00 3.24
4054 4183 2.941720 GCAGAGTTATCCTCCTGCAAAG 59.058 50.000 0.00 0.00 41.47 2.77
4055 4184 3.620966 GCAGAGTTATCCTCCTGCAAAGT 60.621 47.826 0.00 0.00 41.47 2.66
4056 4185 3.937706 CAGAGTTATCCTCCTGCAAAGTG 59.062 47.826 0.00 0.00 41.47 3.16
4057 4186 2.680339 GAGTTATCCTCCTGCAAAGTGC 59.320 50.000 0.00 0.00 37.84 4.40
4058 4187 6.090253 AGAGTTATCCTCCTGCAAAGTGCA 62.090 45.833 2.49 2.49 45.84 4.57
4059 4188 7.501507 AGAGTTATCCTCCTGCAAAGTGCAA 62.502 44.000 4.25 0.00 45.39 4.08
4060 4189 8.881051 AGAGTTATCCTCCTGCAAAGTGCAAA 62.881 42.308 4.25 0.00 45.39 3.68
4068 4197 2.292103 GCAAAGTGCAAACAACAGGA 57.708 45.000 0.00 0.00 44.26 3.86
4069 4198 2.825205 GCAAAGTGCAAACAACAGGAT 58.175 42.857 0.00 0.00 44.26 3.24
4070 4199 3.197265 GCAAAGTGCAAACAACAGGATT 58.803 40.909 0.00 0.00 44.26 3.01
4071 4200 3.245990 GCAAAGTGCAAACAACAGGATTC 59.754 43.478 0.00 0.00 44.26 2.52
4072 4201 3.354089 AAGTGCAAACAACAGGATTCG 57.646 42.857 0.00 0.00 0.00 3.34
4073 4202 2.297701 AGTGCAAACAACAGGATTCGT 58.702 42.857 0.00 0.00 0.00 3.85
4074 4203 3.472652 AGTGCAAACAACAGGATTCGTA 58.527 40.909 0.00 0.00 0.00 3.43
4075 4204 3.498397 AGTGCAAACAACAGGATTCGTAG 59.502 43.478 0.00 0.00 0.00 3.51
4076 4205 3.496884 GTGCAAACAACAGGATTCGTAGA 59.503 43.478 0.00 0.00 0.00 2.59
4077 4206 4.024387 GTGCAAACAACAGGATTCGTAGAA 60.024 41.667 0.00 0.00 45.90 2.10
4078 4207 4.576873 TGCAAACAACAGGATTCGTAGAAA 59.423 37.500 0.00 0.00 45.90 2.52
4079 4208 5.147162 GCAAACAACAGGATTCGTAGAAAG 58.853 41.667 0.00 0.00 45.90 2.62
4080 4209 5.049680 GCAAACAACAGGATTCGTAGAAAGA 60.050 40.000 0.00 0.00 45.90 2.52
4081 4210 6.512741 GCAAACAACAGGATTCGTAGAAAGAA 60.513 38.462 0.00 0.00 45.90 2.52
4082 4211 7.414436 CAAACAACAGGATTCGTAGAAAGAAA 58.586 34.615 0.00 0.00 45.90 2.52
4083 4212 6.787085 ACAACAGGATTCGTAGAAAGAAAG 57.213 37.500 0.00 0.00 45.90 2.62
4084 4213 6.522054 ACAACAGGATTCGTAGAAAGAAAGA 58.478 36.000 0.00 0.00 45.90 2.52
4085 4214 6.990349 ACAACAGGATTCGTAGAAAGAAAGAA 59.010 34.615 0.00 0.00 45.90 2.52
4086 4215 7.171678 ACAACAGGATTCGTAGAAAGAAAGAAG 59.828 37.037 0.00 0.00 45.90 2.85
4087 4216 6.994221 ACAGGATTCGTAGAAAGAAAGAAGA 58.006 36.000 0.00 0.00 45.90 2.87
4088 4217 7.093992 ACAGGATTCGTAGAAAGAAAGAAGAG 58.906 38.462 0.00 0.00 45.90 2.85
4089 4218 7.039644 ACAGGATTCGTAGAAAGAAAGAAGAGA 60.040 37.037 0.00 0.00 45.90 3.10
4090 4219 7.487829 CAGGATTCGTAGAAAGAAAGAAGAGAG 59.512 40.741 0.00 0.00 45.90 3.20
4091 4220 7.177744 AGGATTCGTAGAAAGAAAGAAGAGAGT 59.822 37.037 0.00 0.00 45.90 3.24
4092 4221 8.460428 GGATTCGTAGAAAGAAAGAAGAGAGTA 58.540 37.037 0.00 0.00 45.90 2.59
4093 4222 9.281075 GATTCGTAGAAAGAAAGAAGAGAGTAC 57.719 37.037 0.00 0.00 45.90 2.73
4094 4223 7.982761 TCGTAGAAAGAAAGAAGAGAGTACT 57.017 36.000 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.083953 AGCCCATTATGGATTTCAGGATT 57.916 39.130 13.63 0.00 40.96 3.01
53 54 0.179468 GCCATGGGCTACGGTTAAGA 59.821 55.000 15.13 0.00 46.69 2.10
78 79 0.866427 GATCATCGTGCATGCTGAGG 59.134 55.000 20.33 17.66 31.70 3.86
79 80 1.793532 GAGATCATCGTGCATGCTGAG 59.206 52.381 20.33 10.11 31.70 3.35
82 83 1.540580 CCTGAGATCATCGTGCATGCT 60.541 52.381 20.33 0.00 31.70 3.79
115 122 2.586425 GAGCTAGTGATCAGGAGAGCT 58.414 52.381 16.44 16.44 42.76 4.09
116 123 1.613437 GGAGCTAGTGATCAGGAGAGC 59.387 57.143 0.00 2.72 0.00 4.09
212 220 9.516314 GCCAGTAATCTCATTTGGTAAATAAAC 57.484 33.333 0.00 0.00 0.00 2.01
214 222 9.474313 AAGCCAGTAATCTCATTTGGTAAATAA 57.526 29.630 0.00 0.00 0.00 1.40
216 224 7.961326 AAGCCAGTAATCTCATTTGGTAAAT 57.039 32.000 0.00 0.00 0.00 1.40
276 298 2.268167 ATCTTGCTGCCTGCTCCCTC 62.268 60.000 0.00 0.00 43.37 4.30
329 352 4.181578 CTGGGTGTAGAATGGTACTTTCG 58.818 47.826 0.00 0.00 0.00 3.46
330 353 4.224370 TCCTGGGTGTAGAATGGTACTTTC 59.776 45.833 0.00 0.00 0.00 2.62
331 354 4.172807 TCCTGGGTGTAGAATGGTACTTT 58.827 43.478 0.00 0.00 0.00 2.66
332 355 3.775316 CTCCTGGGTGTAGAATGGTACTT 59.225 47.826 0.00 0.00 0.00 2.24
333 356 3.375699 CTCCTGGGTGTAGAATGGTACT 58.624 50.000 0.00 0.00 0.00 2.73
335 358 2.116238 GCTCCTGGGTGTAGAATGGTA 58.884 52.381 0.00 0.00 0.00 3.25
337 360 0.911769 TGCTCCTGGGTGTAGAATGG 59.088 55.000 0.00 0.00 0.00 3.16
338 361 2.787473 TTGCTCCTGGGTGTAGAATG 57.213 50.000 0.00 0.00 0.00 2.67
339 362 3.624777 CATTTGCTCCTGGGTGTAGAAT 58.375 45.455 0.00 0.00 0.00 2.40
340 363 2.879756 GCATTTGCTCCTGGGTGTAGAA 60.880 50.000 0.00 0.00 38.21 2.10
341 364 1.340017 GCATTTGCTCCTGGGTGTAGA 60.340 52.381 0.00 0.00 38.21 2.59
342 365 1.098050 GCATTTGCTCCTGGGTGTAG 58.902 55.000 0.00 0.00 38.21 2.74
343 366 3.264574 GCATTTGCTCCTGGGTGTA 57.735 52.632 0.00 0.00 38.21 2.90
344 367 4.102113 GCATTTGCTCCTGGGTGT 57.898 55.556 0.00 0.00 38.21 4.16
354 377 0.874390 TTCACACGAGGAGCATTTGC 59.126 50.000 0.00 0.00 42.49 3.68
355 378 1.872952 TGTTCACACGAGGAGCATTTG 59.127 47.619 0.00 0.00 0.00 2.32
356 379 2.146342 CTGTTCACACGAGGAGCATTT 58.854 47.619 0.00 0.00 0.00 2.32
357 380 1.070758 ACTGTTCACACGAGGAGCATT 59.929 47.619 0.00 0.00 0.00 3.56
358 381 0.681733 ACTGTTCACACGAGGAGCAT 59.318 50.000 0.00 0.00 0.00 3.79
359 382 1.324383 TACTGTTCACACGAGGAGCA 58.676 50.000 0.00 0.00 0.00 4.26
360 383 2.433868 TTACTGTTCACACGAGGAGC 57.566 50.000 0.00 0.00 0.00 4.70
361 384 4.988540 TGATTTTACTGTTCACACGAGGAG 59.011 41.667 0.00 0.00 0.00 3.69
362 385 4.951254 TGATTTTACTGTTCACACGAGGA 58.049 39.130 0.00 0.00 0.00 3.71
363 386 5.666969 TTGATTTTACTGTTCACACGAGG 57.333 39.130 0.00 0.00 0.00 4.63
364 387 7.962934 TTTTTGATTTTACTGTTCACACGAG 57.037 32.000 0.00 0.00 0.00 4.18
421 444 6.539464 ACACTTGTGGAAGTATGTCGTAAAAA 59.461 34.615 5.72 0.00 40.68 1.94
422 445 6.050432 ACACTTGTGGAAGTATGTCGTAAAA 58.950 36.000 5.72 0.00 40.68 1.52
423 446 5.603596 ACACTTGTGGAAGTATGTCGTAAA 58.396 37.500 5.72 0.00 40.68 2.01
424 447 5.204409 ACACTTGTGGAAGTATGTCGTAA 57.796 39.130 5.72 0.00 40.68 3.18
425 448 4.859304 ACACTTGTGGAAGTATGTCGTA 57.141 40.909 5.72 0.00 40.68 3.43
426 449 3.746045 ACACTTGTGGAAGTATGTCGT 57.254 42.857 5.72 0.00 40.68 4.34
427 450 4.750098 AGAAACACTTGTGGAAGTATGTCG 59.250 41.667 5.72 0.00 40.68 4.35
428 451 6.619801 AAGAAACACTTGTGGAAGTATGTC 57.380 37.500 5.72 0.00 40.68 3.06
441 464 4.734398 TTTCCATGCACAAGAAACACTT 57.266 36.364 0.00 0.00 39.70 3.16
442 465 4.942761 ATTTCCATGCACAAGAAACACT 57.057 36.364 9.16 0.00 32.67 3.55
443 466 5.989551 AAATTTCCATGCACAAGAAACAC 57.010 34.783 9.16 0.00 32.67 3.32
444 467 6.111382 TGAAAATTTCCATGCACAAGAAACA 58.889 32.000 9.16 2.30 32.67 2.83
445 468 6.601741 TGAAAATTTCCATGCACAAGAAAC 57.398 33.333 9.16 0.18 32.67 2.78
446 469 6.990939 TGATGAAAATTTCCATGCACAAGAAA 59.009 30.769 0.00 9.34 34.26 2.52
447 470 6.522946 TGATGAAAATTTCCATGCACAAGAA 58.477 32.000 0.00 0.00 0.00 2.52
448 471 6.099159 TGATGAAAATTTCCATGCACAAGA 57.901 33.333 0.00 0.00 0.00 3.02
449 472 6.978343 ATGATGAAAATTTCCATGCACAAG 57.022 33.333 0.00 0.00 0.00 3.16
450 473 8.843885 TTTATGATGAAAATTTCCATGCACAA 57.156 26.923 0.00 0.00 0.00 3.33
451 474 8.843885 TTTTATGATGAAAATTTCCATGCACA 57.156 26.923 0.00 0.00 0.00 4.57
452 475 9.925268 GATTTTATGATGAAAATTTCCATGCAC 57.075 29.630 0.00 0.00 38.76 4.57
453 476 9.668497 TGATTTTATGATGAAAATTTCCATGCA 57.332 25.926 0.00 0.00 38.76 3.96
454 477 9.925268 GTGATTTTATGATGAAAATTTCCATGC 57.075 29.630 0.00 0.00 38.76 4.06
466 489 9.192642 ACTTCCATGAATGTGATTTTATGATGA 57.807 29.630 0.00 0.00 0.00 2.92
467 490 9.459640 GACTTCCATGAATGTGATTTTATGATG 57.540 33.333 0.00 0.00 0.00 3.07
468 491 8.347771 CGACTTCCATGAATGTGATTTTATGAT 58.652 33.333 0.00 0.00 0.00 2.45
469 492 7.336679 ACGACTTCCATGAATGTGATTTTATGA 59.663 33.333 0.00 0.00 0.00 2.15
470 493 7.430211 CACGACTTCCATGAATGTGATTTTATG 59.570 37.037 0.00 0.00 0.00 1.90
471 494 7.475015 CACGACTTCCATGAATGTGATTTTAT 58.525 34.615 0.00 0.00 0.00 1.40
472 495 6.622679 GCACGACTTCCATGAATGTGATTTTA 60.623 38.462 0.00 0.00 0.00 1.52
473 496 5.702865 CACGACTTCCATGAATGTGATTTT 58.297 37.500 0.00 0.00 0.00 1.82
474 497 4.379813 GCACGACTTCCATGAATGTGATTT 60.380 41.667 0.00 0.00 0.00 2.17
475 498 3.127548 GCACGACTTCCATGAATGTGATT 59.872 43.478 0.00 0.00 0.00 2.57
476 499 2.679837 GCACGACTTCCATGAATGTGAT 59.320 45.455 0.00 0.00 0.00 3.06
477 500 2.076100 GCACGACTTCCATGAATGTGA 58.924 47.619 0.00 0.00 0.00 3.58
478 501 1.131126 GGCACGACTTCCATGAATGTG 59.869 52.381 0.00 0.00 0.00 3.21
479 502 1.271325 TGGCACGACTTCCATGAATGT 60.271 47.619 0.00 0.00 0.00 2.71
480 503 1.452110 TGGCACGACTTCCATGAATG 58.548 50.000 0.00 0.00 0.00 2.67
481 504 2.198827 TTGGCACGACTTCCATGAAT 57.801 45.000 0.00 0.00 31.54 2.57
482 505 1.974265 TTTGGCACGACTTCCATGAA 58.026 45.000 0.00 0.00 31.54 2.57
483 506 1.974265 TTTTGGCACGACTTCCATGA 58.026 45.000 0.00 0.00 31.54 3.07
484 507 2.791383 TTTTTGGCACGACTTCCATG 57.209 45.000 0.00 0.00 31.54 3.66
501 524 8.344831 GCATTTTGGAGCTCTAATTTTGTTTTT 58.655 29.630 13.78 0.00 0.00 1.94
502 525 7.716560 AGCATTTTGGAGCTCTAATTTTGTTTT 59.283 29.630 13.78 0.91 36.00 2.43
503 526 7.219322 AGCATTTTGGAGCTCTAATTTTGTTT 58.781 30.769 13.78 2.95 36.00 2.83
504 527 6.762333 AGCATTTTGGAGCTCTAATTTTGTT 58.238 32.000 13.78 6.96 36.00 2.83
505 528 6.350629 AGCATTTTGGAGCTCTAATTTTGT 57.649 33.333 13.78 0.00 36.00 2.83
506 529 7.662604 AAAGCATTTTGGAGCTCTAATTTTG 57.337 32.000 13.78 11.93 40.90 2.44
524 547 9.683069 CTCTGAAAATGTTACTTACAAAAGCAT 57.317 29.630 0.00 0.00 40.89 3.79
525 548 7.647715 GCTCTGAAAATGTTACTTACAAAAGCA 59.352 33.333 0.00 0.00 40.89 3.91
526 549 7.647715 TGCTCTGAAAATGTTACTTACAAAAGC 59.352 33.333 0.00 0.00 40.89 3.51
527 550 9.683069 ATGCTCTGAAAATGTTACTTACAAAAG 57.317 29.630 0.00 0.00 40.89 2.27
528 551 9.677567 GATGCTCTGAAAATGTTACTTACAAAA 57.322 29.630 0.00 0.00 40.89 2.44
529 552 8.015087 CGATGCTCTGAAAATGTTACTTACAAA 58.985 33.333 0.00 0.00 40.89 2.83
530 553 7.386573 TCGATGCTCTGAAAATGTTACTTACAA 59.613 33.333 0.00 0.00 40.89 2.41
531 554 6.871492 TCGATGCTCTGAAAATGTTACTTACA 59.129 34.615 0.00 0.00 41.97 2.41
532 555 7.290857 TCGATGCTCTGAAAATGTTACTTAC 57.709 36.000 0.00 0.00 0.00 2.34
533 556 8.492673 AATCGATGCTCTGAAAATGTTACTTA 57.507 30.769 0.00 0.00 0.00 2.24
534 557 6.992063 ATCGATGCTCTGAAAATGTTACTT 57.008 33.333 0.00 0.00 0.00 2.24
535 558 6.992063 AATCGATGCTCTGAAAATGTTACT 57.008 33.333 0.00 0.00 0.00 2.24
536 559 7.538678 ACAAAATCGATGCTCTGAAAATGTTAC 59.461 33.333 0.00 0.00 0.00 2.50
537 560 7.592938 ACAAAATCGATGCTCTGAAAATGTTA 58.407 30.769 0.00 0.00 0.00 2.41
538 561 6.449698 ACAAAATCGATGCTCTGAAAATGTT 58.550 32.000 0.00 0.00 0.00 2.71
539 562 6.017400 ACAAAATCGATGCTCTGAAAATGT 57.983 33.333 0.00 0.00 0.00 2.71
540 563 6.939551 AACAAAATCGATGCTCTGAAAATG 57.060 33.333 0.00 0.00 0.00 2.32
541 564 7.951530 AAAACAAAATCGATGCTCTGAAAAT 57.048 28.000 0.00 0.00 0.00 1.82
542 565 7.769272 AAAAACAAAATCGATGCTCTGAAAA 57.231 28.000 0.00 0.00 0.00 2.29
565 588 3.383698 TGGTGGAAGGTGTGGTAAAAA 57.616 42.857 0.00 0.00 0.00 1.94
566 589 3.383698 TTGGTGGAAGGTGTGGTAAAA 57.616 42.857 0.00 0.00 0.00 1.52
567 590 3.226777 CATTGGTGGAAGGTGTGGTAAA 58.773 45.455 0.00 0.00 0.00 2.01
568 591 2.175931 ACATTGGTGGAAGGTGTGGTAA 59.824 45.455 0.00 0.00 0.00 2.85
569 592 1.777878 ACATTGGTGGAAGGTGTGGTA 59.222 47.619 0.00 0.00 0.00 3.25
570 593 0.555769 ACATTGGTGGAAGGTGTGGT 59.444 50.000 0.00 0.00 0.00 4.16
571 594 0.961019 CACATTGGTGGAAGGTGTGG 59.039 55.000 0.00 0.00 40.70 4.17
572 595 1.979855 TCACATTGGTGGAAGGTGTG 58.020 50.000 0.00 0.00 44.90 3.82
573 596 2.978156 ATCACATTGGTGGAAGGTGT 57.022 45.000 0.00 0.00 44.90 4.16
574 597 3.366273 CGAAATCACATTGGTGGAAGGTG 60.366 47.826 0.00 0.00 45.79 4.00
575 598 2.819608 CGAAATCACATTGGTGGAAGGT 59.180 45.455 0.00 0.00 45.32 3.50
576 599 2.819608 ACGAAATCACATTGGTGGAAGG 59.180 45.455 0.00 0.00 45.32 3.46
577 600 3.501828 TCACGAAATCACATTGGTGGAAG 59.498 43.478 0.00 0.00 45.32 3.46
578 601 3.481453 TCACGAAATCACATTGGTGGAA 58.519 40.909 0.00 0.00 45.32 3.53
579 602 3.133141 TCACGAAATCACATTGGTGGA 57.867 42.857 0.00 0.00 45.32 4.02
580 603 3.439825 TCATCACGAAATCACATTGGTGG 59.560 43.478 0.00 0.00 45.32 4.61
581 604 4.683501 TCATCACGAAATCACATTGGTG 57.316 40.909 0.00 0.00 46.66 4.17
582 605 5.703978 TTTCATCACGAAATCACATTGGT 57.296 34.783 0.00 0.00 38.72 3.67
593 616 4.907010 GTGCACGTAAAATTTCATCACGAA 59.093 37.500 16.51 4.59 36.51 3.85
594 617 4.024809 TGTGCACGTAAAATTTCATCACGA 60.025 37.500 13.13 0.00 36.51 4.35
595 618 4.215201 TGTGCACGTAAAATTTCATCACG 58.785 39.130 13.13 10.95 38.52 4.35
596 619 5.457148 TGTTGTGCACGTAAAATTTCATCAC 59.543 36.000 13.13 0.00 0.00 3.06
597 620 5.582550 TGTTGTGCACGTAAAATTTCATCA 58.417 33.333 13.13 0.00 0.00 3.07
598 621 6.503616 TTGTTGTGCACGTAAAATTTCATC 57.496 33.333 13.13 0.00 0.00 2.92
599 622 6.311445 TGTTTGTTGTGCACGTAAAATTTCAT 59.689 30.769 13.13 0.00 0.00 2.57
600 623 5.633601 TGTTTGTTGTGCACGTAAAATTTCA 59.366 32.000 13.13 5.09 0.00 2.69
601 624 6.083925 TGTTTGTTGTGCACGTAAAATTTC 57.916 33.333 13.13 2.75 0.00 2.17
602 625 6.654793 ATGTTTGTTGTGCACGTAAAATTT 57.345 29.167 13.13 1.94 0.00 1.82
603 626 6.654793 AATGTTTGTTGTGCACGTAAAATT 57.345 29.167 13.13 7.37 0.00 1.82
604 627 6.473521 CAAATGTTTGTTGTGCACGTAAAAT 58.526 32.000 13.13 1.46 33.59 1.82
605 628 5.847715 CAAATGTTTGTTGTGCACGTAAAA 58.152 33.333 13.13 9.26 33.59 1.52
606 629 5.441700 CAAATGTTTGTTGTGCACGTAAA 57.558 34.783 13.13 10.29 33.59 2.01
619 642 8.978564 TTGTGGCATACTTATACAAATGTTTG 57.021 30.769 4.04 4.04 43.62 2.93
620 643 9.988815 TTTTGTGGCATACTTATACAAATGTTT 57.011 25.926 0.00 0.00 39.90 2.83
621 644 9.988815 TTTTTGTGGCATACTTATACAAATGTT 57.011 25.926 0.00 0.00 39.90 2.71
681 704 8.294954 TCCTGGTGTGAACAGTAAAATAAAAA 57.705 30.769 0.00 0.00 34.16 1.94
682 705 7.469456 GCTCCTGGTGTGAACAGTAAAATAAAA 60.469 37.037 0.00 0.00 34.16 1.52
683 706 6.016610 GCTCCTGGTGTGAACAGTAAAATAAA 60.017 38.462 0.00 0.00 34.16 1.40
684 707 5.472137 GCTCCTGGTGTGAACAGTAAAATAA 59.528 40.000 0.00 0.00 34.16 1.40
685 708 5.001232 GCTCCTGGTGTGAACAGTAAAATA 58.999 41.667 0.00 0.00 34.16 1.40
686 709 3.821033 GCTCCTGGTGTGAACAGTAAAAT 59.179 43.478 0.00 0.00 34.16 1.82
687 710 3.211045 GCTCCTGGTGTGAACAGTAAAA 58.789 45.455 0.00 0.00 34.16 1.52
688 711 2.171659 TGCTCCTGGTGTGAACAGTAAA 59.828 45.455 0.00 0.00 34.16 2.01
689 712 1.765904 TGCTCCTGGTGTGAACAGTAA 59.234 47.619 0.00 0.00 34.16 2.24
690 713 1.419381 TGCTCCTGGTGTGAACAGTA 58.581 50.000 0.00 0.00 34.16 2.74
691 714 0.767375 ATGCTCCTGGTGTGAACAGT 59.233 50.000 0.00 0.00 34.16 3.55
692 715 1.901591 AATGCTCCTGGTGTGAACAG 58.098 50.000 0.00 0.00 35.74 3.16
693 716 1.955778 CAAATGCTCCTGGTGTGAACA 59.044 47.619 0.00 0.00 0.00 3.18
694 717 1.336240 GCAAATGCTCCTGGTGTGAAC 60.336 52.381 0.00 0.00 38.21 3.18
695 718 0.961019 GCAAATGCTCCTGGTGTGAA 59.039 50.000 0.00 0.00 38.21 3.18
696 719 2.644887 GCAAATGCTCCTGGTGTGA 58.355 52.632 0.00 0.00 38.21 3.58
707 730 4.503741 TTCTACACAAAGGAGCAAATGC 57.496 40.909 0.00 0.00 42.49 3.56
708 731 6.076981 AGTTTCTACACAAAGGAGCAAATG 57.923 37.500 0.00 0.00 0.00 2.32
709 732 5.241728 GGAGTTTCTACACAAAGGAGCAAAT 59.758 40.000 0.00 0.00 0.00 2.32
710 733 4.578928 GGAGTTTCTACACAAAGGAGCAAA 59.421 41.667 0.00 0.00 0.00 3.68
711 734 4.134563 GGAGTTTCTACACAAAGGAGCAA 58.865 43.478 0.00 0.00 0.00 3.91
712 735 3.135712 TGGAGTTTCTACACAAAGGAGCA 59.864 43.478 0.00 0.00 0.00 4.26
713 736 3.498777 GTGGAGTTTCTACACAAAGGAGC 59.501 47.826 7.18 0.00 44.20 4.70
714 737 3.741344 CGTGGAGTTTCTACACAAAGGAG 59.259 47.826 11.83 0.00 44.98 3.69
715 738 3.133362 ACGTGGAGTTTCTACACAAAGGA 59.867 43.478 11.83 0.00 44.98 3.36
716 739 3.463944 ACGTGGAGTTTCTACACAAAGG 58.536 45.455 11.83 0.00 44.98 3.11
717 740 3.493503 GGACGTGGAGTTTCTACACAAAG 59.506 47.826 11.83 0.00 44.98 2.77
718 741 3.460103 GGACGTGGAGTTTCTACACAAA 58.540 45.455 11.83 0.00 44.98 2.83
719 742 2.224113 GGGACGTGGAGTTTCTACACAA 60.224 50.000 11.83 0.00 44.98 3.33
720 743 1.342174 GGGACGTGGAGTTTCTACACA 59.658 52.381 11.83 0.00 44.98 3.72
721 744 2.075979 GGGACGTGGAGTTTCTACAC 57.924 55.000 0.00 2.35 41.58 2.90
740 763 3.315142 TACTCCTGCCTTGCTGCCG 62.315 63.158 0.00 0.00 0.00 5.69
741 764 1.451028 CTACTCCTGCCTTGCTGCC 60.451 63.158 0.00 0.00 0.00 4.85
742 765 1.451028 CCTACTCCTGCCTTGCTGC 60.451 63.158 0.00 0.00 0.00 5.25
743 766 1.222936 CCCTACTCCTGCCTTGCTG 59.777 63.158 0.00 0.00 0.00 4.41
744 767 2.674220 GCCCTACTCCTGCCTTGCT 61.674 63.158 0.00 0.00 0.00 3.91
745 768 1.338136 TAGCCCTACTCCTGCCTTGC 61.338 60.000 0.00 0.00 0.00 4.01
746 769 1.204146 TTAGCCCTACTCCTGCCTTG 58.796 55.000 0.00 0.00 0.00 3.61
747 770 1.966845 TTTAGCCCTACTCCTGCCTT 58.033 50.000 0.00 0.00 0.00 4.35
748 771 1.966845 TTTTAGCCCTACTCCTGCCT 58.033 50.000 0.00 0.00 0.00 4.75
749 772 2.238898 TCTTTTTAGCCCTACTCCTGCC 59.761 50.000 0.00 0.00 0.00 4.85
750 773 3.629142 TCTTTTTAGCCCTACTCCTGC 57.371 47.619 0.00 0.00 0.00 4.85
751 774 5.179533 GTCTTCTTTTTAGCCCTACTCCTG 58.820 45.833 0.00 0.00 0.00 3.86
757 780 6.440647 TCTGATCTGTCTTCTTTTTAGCCCTA 59.559 38.462 0.00 0.00 0.00 3.53
766 789 2.093764 CCGCCTCTGATCTGTCTTCTTT 60.094 50.000 0.00 0.00 0.00 2.52
903 932 7.364970 GGGTACGTGACAAATTATCAGTTTTT 58.635 34.615 0.00 0.00 0.00 1.94
912 941 2.067766 GTGCGGGTACGTGACAAATTA 58.932 47.619 0.00 0.00 43.45 1.40
937 966 6.408662 GGAGAGCTTCAACTATTAATGGAGGT 60.409 42.308 5.74 0.00 35.64 3.85
1050 1086 5.044558 GTCTTGTACTTCTACCTATGCAGC 58.955 45.833 0.00 0.00 0.00 5.25
1052 1088 4.097437 CGGTCTTGTACTTCTACCTATGCA 59.903 45.833 0.00 0.00 0.00 3.96
1053 1089 4.499357 CCGGTCTTGTACTTCTACCTATGC 60.499 50.000 0.00 0.00 0.00 3.14
1054 1090 4.037684 CCCGGTCTTGTACTTCTACCTATG 59.962 50.000 0.00 0.00 0.00 2.23
1061 1097 1.893801 CAGTCCCGGTCTTGTACTTCT 59.106 52.381 0.00 0.00 0.00 2.85
1063 1099 1.343465 CACAGTCCCGGTCTTGTACTT 59.657 52.381 0.00 0.00 0.00 2.24
1070 1106 0.036732 TACGTACACAGTCCCGGTCT 59.963 55.000 0.00 0.00 0.00 3.85
1072 1108 1.203052 CAATACGTACACAGTCCCGGT 59.797 52.381 0.00 0.00 0.00 5.28
1074 1110 1.203052 ACCAATACGTACACAGTCCCG 59.797 52.381 0.00 0.00 0.00 5.14
1078 1114 3.568538 GACGAACCAATACGTACACAGT 58.431 45.455 0.00 0.00 42.74 3.55
1079 1115 2.591148 CGACGAACCAATACGTACACAG 59.409 50.000 0.00 0.00 42.74 3.66
1080 1116 2.583739 CGACGAACCAATACGTACACA 58.416 47.619 0.00 0.00 42.74 3.72
1081 1117 1.318491 GCGACGAACCAATACGTACAC 59.682 52.381 0.00 0.00 42.74 2.90
1082 1118 1.616620 GCGACGAACCAATACGTACA 58.383 50.000 0.00 0.00 42.74 2.90
1083 1119 0.916581 GGCGACGAACCAATACGTAC 59.083 55.000 0.00 0.00 42.74 3.67
1084 1120 0.525311 TGGCGACGAACCAATACGTA 59.475 50.000 0.00 0.00 42.74 3.57
1085 1121 0.108520 ATGGCGACGAACCAATACGT 60.109 50.000 0.00 0.00 41.49 3.57
1086 1122 0.300491 CATGGCGACGAACCAATACG 59.700 55.000 0.00 0.00 41.49 3.06
1087 1123 0.655733 CCATGGCGACGAACCAATAC 59.344 55.000 0.00 0.00 41.49 1.89
1088 1124 0.250793 ACCATGGCGACGAACCAATA 59.749 50.000 13.04 0.00 41.49 1.90
1089 1125 0.608035 AACCATGGCGACGAACCAAT 60.608 50.000 13.04 0.00 41.49 3.16
1321 1376 2.360209 CCCTTCTTCCTCCTCCTCATCT 60.360 54.545 0.00 0.00 0.00 2.90
1324 1379 0.043334 CCCCTTCTTCCTCCTCCTCA 59.957 60.000 0.00 0.00 0.00 3.86
1336 1391 2.348472 TGGTGATGTTCTTCCCCTTCT 58.652 47.619 0.00 0.00 0.00 2.85
1339 1397 1.995542 ACATGGTGATGTTCTTCCCCT 59.004 47.619 0.00 0.00 40.05 4.79
1354 1412 4.023561 CAGAAACTGAGCCAGCACATGG 62.024 54.545 0.00 0.00 42.41 3.66
1681 1739 1.589993 CGACATGAGCTCGGCGATT 60.590 57.895 11.27 0.96 0.00 3.34
2116 2174 1.617804 CCCTGCTCCACCATGAACATT 60.618 52.381 0.00 0.00 0.00 2.71
2266 2324 1.694133 GCTGGAGGAGGGACTGGATG 61.694 65.000 0.00 0.00 41.55 3.51
2275 2333 2.183679 GGGTATATCAGCTGGAGGAGG 58.816 57.143 15.13 0.00 0.00 4.30
2335 2393 2.044946 AAGAACCAGATGGCGGCC 60.045 61.111 13.32 13.32 39.32 6.13
2683 2741 1.523258 CATCAGCTTGCCCTCGGAG 60.523 63.158 0.00 0.00 0.00 4.63
2755 2813 2.520979 GACGACACGATCTTCTTCCTG 58.479 52.381 0.00 0.00 0.00 3.86
2915 2978 6.876257 GTGAAGACATCTGAGTAAGAAATGGT 59.124 38.462 0.00 0.00 38.79 3.55
2938 3001 5.619086 CGCTAAATCAAAGGGGTGTTTAGTG 60.619 44.000 0.00 0.00 36.88 2.74
2963 3034 7.549134 TGGACAGCAAATCAAATGTACTACTAG 59.451 37.037 0.00 0.00 0.00 2.57
3024 3095 3.056607 GCAATGTACAGCACAAGGGAATT 60.057 43.478 0.33 0.00 41.55 2.17
3078 3152 2.617308 GGCTGATGATCATCACACAAGG 59.383 50.000 30.27 21.09 42.42 3.61
3090 3167 3.705051 ACAACTTCCAATGGCTGATGAT 58.295 40.909 0.00 0.00 0.00 2.45
3091 3168 3.159213 ACAACTTCCAATGGCTGATGA 57.841 42.857 0.00 0.00 0.00 2.92
3092 3169 5.389859 TTTACAACTTCCAATGGCTGATG 57.610 39.130 0.00 0.00 0.00 3.07
3100 3177 6.041979 AGCACTGGATTTTTACAACTTCCAAT 59.958 34.615 0.00 0.00 36.12 3.16
3115 3192 3.554934 TGTCTGAAACAAGCACTGGATT 58.445 40.909 0.00 0.00 34.03 3.01
3116 3193 3.213206 TGTCTGAAACAAGCACTGGAT 57.787 42.857 0.00 0.00 34.03 3.41
3117 3194 2.708216 TGTCTGAAACAAGCACTGGA 57.292 45.000 0.00 0.00 34.03 3.86
3119 3196 4.534168 CAAGATGTCTGAAACAAGCACTG 58.466 43.478 0.00 0.00 42.37 3.66
3120 3197 3.004106 GCAAGATGTCTGAAACAAGCACT 59.996 43.478 0.00 0.00 42.37 4.40
3156 3252 0.108585 TGCTGGACTTGTCAGGGTTC 59.891 55.000 3.08 0.00 33.16 3.62
3183 3279 7.998383 TGGAGTGTGTTTGGATATATTTGCTAT 59.002 33.333 0.00 0.00 0.00 2.97
3243 3339 1.073722 CCCAGTTGCTCTCTGCCAA 59.926 57.895 0.00 0.00 42.00 4.52
3257 3353 1.065199 TCAGCTTGCTCATAACCCCAG 60.065 52.381 0.00 0.00 0.00 4.45
3274 3371 3.408634 AGTTAATCCGTGGGTTTGTCAG 58.591 45.455 0.00 0.00 0.00 3.51
3275 3372 3.495434 AGTTAATCCGTGGGTTTGTCA 57.505 42.857 0.00 0.00 0.00 3.58
3283 3380 4.117685 GCTGGTAGTTAGTTAATCCGTGG 58.882 47.826 0.00 0.00 0.00 4.94
3284 3381 4.804139 CAGCTGGTAGTTAGTTAATCCGTG 59.196 45.833 5.57 0.00 0.00 4.94
3285 3382 4.679905 GCAGCTGGTAGTTAGTTAATCCGT 60.680 45.833 17.12 0.00 0.00 4.69
3286 3383 3.802685 GCAGCTGGTAGTTAGTTAATCCG 59.197 47.826 17.12 0.00 0.00 4.18
3288 3385 3.802685 CCGCAGCTGGTAGTTAGTTAATC 59.197 47.826 17.12 0.00 0.00 1.75
3289 3386 3.197116 ACCGCAGCTGGTAGTTAGTTAAT 59.803 43.478 17.12 0.00 41.55 1.40
3290 3387 2.564062 ACCGCAGCTGGTAGTTAGTTAA 59.436 45.455 17.12 0.00 41.55 2.01
3291 3388 2.173519 ACCGCAGCTGGTAGTTAGTTA 58.826 47.619 17.12 0.00 41.55 2.24
3292 3389 0.974383 ACCGCAGCTGGTAGTTAGTT 59.026 50.000 17.12 0.00 41.55 2.24
3293 3390 0.974383 AACCGCAGCTGGTAGTTAGT 59.026 50.000 17.12 0.00 42.89 2.24
3294 3391 2.165845 AGTAACCGCAGCTGGTAGTTAG 59.834 50.000 17.12 0.00 42.89 2.34
3304 3401 0.108138 AGTGATGGAGTAACCGCAGC 60.108 55.000 0.00 0.00 42.61 5.25
3389 3486 8.986929 ATAAACTTGAGATGGAAGGATAAAGG 57.013 34.615 0.00 0.00 0.00 3.11
3397 3494 5.468072 CGGGATGATAAACTTGAGATGGAAG 59.532 44.000 0.00 0.00 0.00 3.46
3461 3563 1.834263 CAGCTAGAAGCCTGGGTAAGT 59.166 52.381 0.00 0.00 43.77 2.24
3466 3568 1.815003 CAAAACAGCTAGAAGCCTGGG 59.185 52.381 0.00 0.00 43.77 4.45
3485 3587 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
3486 3588 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3487 3589 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3488 3590 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3489 3591 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3490 3592 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3491 3593 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3492 3594 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3493 3595 8.818057 CACAAAGACTTATATTTAGGAACGGAG 58.182 37.037 0.00 0.00 0.00 4.63
3494 3596 7.767198 CCACAAAGACTTATATTTAGGAACGGA 59.233 37.037 0.00 0.00 0.00 4.69
3495 3597 7.767198 TCCACAAAGACTTATATTTAGGAACGG 59.233 37.037 0.00 0.00 0.00 4.44
3496 3598 8.712285 TCCACAAAGACTTATATTTAGGAACG 57.288 34.615 0.00 0.00 0.00 3.95
3497 3599 9.886132 TCTCCACAAAGACTTATATTTAGGAAC 57.114 33.333 0.00 0.00 28.02 3.62
3527 3629 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
3528 3630 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
3529 3631 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
3530 3632 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
3531 3633 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
3532 3634 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
3533 3635 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
3534 3636 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3535 3637 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3536 3638 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
3537 3639 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
3538 3640 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
3539 3641 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
3540 3642 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3541 3643 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
3542 3644 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
3543 3645 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
3544 3646 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
3545 3647 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
3546 3648 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
3583 3685 9.803315 CACTATAAACCGCATACAGATGTATAT 57.197 33.333 5.21 0.00 39.06 0.86
3584 3686 8.248253 CCACTATAAACCGCATACAGATGTATA 58.752 37.037 5.21 0.00 39.06 1.47
3585 3687 7.039293 TCCACTATAAACCGCATACAGATGTAT 60.039 37.037 0.00 0.00 41.58 2.29
3586 3688 6.265876 TCCACTATAAACCGCATACAGATGTA 59.734 38.462 0.00 0.00 35.30 2.29
3587 3689 5.069914 TCCACTATAAACCGCATACAGATGT 59.930 40.000 0.00 0.00 35.30 3.06
3588 3690 5.538118 TCCACTATAAACCGCATACAGATG 58.462 41.667 0.00 0.00 36.02 2.90
3589 3691 5.801531 TCCACTATAAACCGCATACAGAT 57.198 39.130 0.00 0.00 0.00 2.90
3590 3692 5.601583 TTCCACTATAAACCGCATACAGA 57.398 39.130 0.00 0.00 0.00 3.41
3591 3693 6.223852 AGATTCCACTATAAACCGCATACAG 58.776 40.000 0.00 0.00 0.00 2.74
3592 3694 6.041637 AGAGATTCCACTATAAACCGCATACA 59.958 38.462 0.00 0.00 0.00 2.29
3593 3695 6.456501 AGAGATTCCACTATAAACCGCATAC 58.543 40.000 0.00 0.00 0.00 2.39
3594 3696 6.665992 AGAGATTCCACTATAAACCGCATA 57.334 37.500 0.00 0.00 0.00 3.14
3595 3697 5.552870 AGAGATTCCACTATAAACCGCAT 57.447 39.130 0.00 0.00 0.00 4.73
3596 3698 5.361571 TGTAGAGATTCCACTATAAACCGCA 59.638 40.000 0.00 0.00 0.00 5.69
3597 3699 5.839621 TGTAGAGATTCCACTATAAACCGC 58.160 41.667 0.00 0.00 0.00 5.68
3598 3700 8.195436 TCTTTGTAGAGATTCCACTATAAACCG 58.805 37.037 0.00 0.00 30.73 4.44
3599 3701 9.315525 GTCTTTGTAGAGATTCCACTATAAACC 57.684 37.037 0.00 0.00 30.73 3.27
3604 3706 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
3605 3707 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
3606 3708 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
3607 3709 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
3613 3715 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
3614 3716 9.706691 TGTTCCTAAATGTAAGTCTTTGTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
3615 3717 9.706691 CTGTTCCTAAATGTAAGTCTTTGTAGA 57.293 33.333 0.00 0.00 0.00 2.59
3616 3718 9.706691 TCTGTTCCTAAATGTAAGTCTTTGTAG 57.293 33.333 0.00 0.00 0.00 2.74
3617 3719 9.706691 CTCTGTTCCTAAATGTAAGTCTTTGTA 57.293 33.333 0.00 0.00 0.00 2.41
3618 3720 7.661847 CCTCTGTTCCTAAATGTAAGTCTTTGT 59.338 37.037 0.00 0.00 0.00 2.83
3619 3721 7.119846 CCCTCTGTTCCTAAATGTAAGTCTTTG 59.880 40.741 0.00 0.00 0.00 2.77
3620 3722 7.017254 TCCCTCTGTTCCTAAATGTAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
3621 3723 6.500751 TCCCTCTGTTCCTAAATGTAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
3622 3724 6.023603 TCCCTCTGTTCCTAAATGTAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
3623 3725 6.070710 ACTCCCTCTGTTCCTAAATGTAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
3624 3726 5.785940 ACTCCCTCTGTTCCTAAATGTAAGT 59.214 40.000 0.00 0.00 0.00 2.24
3625 3727 6.301169 ACTCCCTCTGTTCCTAAATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
3626 3728 7.989947 ATACTCCCTCTGTTCCTAAATGTAA 57.010 36.000 0.00 0.00 0.00 2.41
3627 3729 9.090103 CATATACTCCCTCTGTTCCTAAATGTA 57.910 37.037 0.00 0.00 0.00 2.29
3628 3730 7.569111 ACATATACTCCCTCTGTTCCTAAATGT 59.431 37.037 0.00 0.00 0.00 2.71
3629 3731 7.875041 CACATATACTCCCTCTGTTCCTAAATG 59.125 40.741 0.00 0.00 0.00 2.32
3630 3732 7.473511 GCACATATACTCCCTCTGTTCCTAAAT 60.474 40.741 0.00 0.00 0.00 1.40
3631 3733 6.183360 GCACATATACTCCCTCTGTTCCTAAA 60.183 42.308 0.00 0.00 0.00 1.85
3632 3734 5.304614 GCACATATACTCCCTCTGTTCCTAA 59.695 44.000 0.00 0.00 0.00 2.69
3633 3735 4.833380 GCACATATACTCCCTCTGTTCCTA 59.167 45.833 0.00 0.00 0.00 2.94
3634 3736 3.643792 GCACATATACTCCCTCTGTTCCT 59.356 47.826 0.00 0.00 0.00 3.36
3635 3737 3.643792 AGCACATATACTCCCTCTGTTCC 59.356 47.826 0.00 0.00 0.00 3.62
3636 3738 4.586841 AGAGCACATATACTCCCTCTGTTC 59.413 45.833 0.00 0.00 33.18 3.18
3637 3739 4.343526 CAGAGCACATATACTCCCTCTGTT 59.656 45.833 7.17 0.00 40.65 3.16
3638 3740 3.894427 CAGAGCACATATACTCCCTCTGT 59.106 47.826 7.17 0.00 40.65 3.41
3639 3741 4.517952 CAGAGCACATATACTCCCTCTG 57.482 50.000 0.00 0.00 39.95 3.35
3640 3742 3.894427 CACAGAGCACATATACTCCCTCT 59.106 47.826 0.00 0.00 33.18 3.69
3641 3743 3.006323 CCACAGAGCACATATACTCCCTC 59.994 52.174 0.00 0.00 33.18 4.30
3642 3744 2.968574 CCACAGAGCACATATACTCCCT 59.031 50.000 0.00 0.00 33.18 4.20
3643 3745 2.548920 GCCACAGAGCACATATACTCCC 60.549 54.545 0.00 0.00 33.18 4.30
3644 3746 2.366916 AGCCACAGAGCACATATACTCC 59.633 50.000 0.00 0.00 33.18 3.85
3645 3747 3.068732 TGAGCCACAGAGCACATATACTC 59.931 47.826 0.00 0.00 34.23 2.59
3646 3748 3.033909 TGAGCCACAGAGCACATATACT 58.966 45.455 0.00 0.00 34.23 2.12
3651 3753 2.211250 ATTTGAGCCACAGAGCACAT 57.789 45.000 0.00 0.00 33.27 3.21
3676 3778 2.887783 CGTGAGCACATATACTCCCTCT 59.112 50.000 1.20 0.00 31.65 3.69
3677 3779 2.623889 ACGTGAGCACATATACTCCCTC 59.376 50.000 1.20 0.00 31.65 4.30
3678 3780 2.362397 CACGTGAGCACATATACTCCCT 59.638 50.000 10.90 0.00 31.65 4.20
3681 3783 4.283678 GAGACACGTGAGCACATATACTC 58.716 47.826 25.01 4.30 0.00 2.59
3682 3784 3.066900 GGAGACACGTGAGCACATATACT 59.933 47.826 25.01 5.13 0.00 2.12
3683 3785 3.181490 TGGAGACACGTGAGCACATATAC 60.181 47.826 25.01 0.00 33.40 1.47
3684 3786 3.020984 TGGAGACACGTGAGCACATATA 58.979 45.455 25.01 0.00 33.40 0.86
3686 3788 1.202348 CTGGAGACACGTGAGCACATA 59.798 52.381 25.01 4.92 35.60 2.29
3688 3790 1.363807 CTGGAGACACGTGAGCACA 59.636 57.895 25.01 14.20 35.60 4.57
3689 3791 2.024319 GCTGGAGACACGTGAGCAC 61.024 63.158 25.01 11.89 35.60 4.40
3690 3792 2.026945 TTGCTGGAGACACGTGAGCA 62.027 55.000 25.01 22.64 35.07 4.26
3691 3793 0.671781 ATTGCTGGAGACACGTGAGC 60.672 55.000 25.01 20.18 35.60 4.26
3692 3794 1.073964 CATTGCTGGAGACACGTGAG 58.926 55.000 25.01 9.87 35.60 3.51
3730 3848 4.459390 TTGCATGGATCCAAACTCAATG 57.541 40.909 20.67 11.74 0.00 2.82
3732 3850 4.087907 TGATTGCATGGATCCAAACTCAA 58.912 39.130 20.67 18.73 0.00 3.02
3735 3853 5.687166 AATTGATTGCATGGATCCAAACT 57.313 34.783 20.67 0.00 0.00 2.66
3736 3854 5.065474 CCAAATTGATTGCATGGATCCAAAC 59.935 40.000 20.67 14.37 37.73 2.93
3737 3855 5.045797 TCCAAATTGATTGCATGGATCCAAA 60.046 36.000 20.67 9.37 37.73 3.28
3738 3856 4.470304 TCCAAATTGATTGCATGGATCCAA 59.530 37.500 20.67 1.57 37.73 3.53
3739 3857 4.031611 TCCAAATTGATTGCATGGATCCA 58.968 39.130 18.88 18.88 37.73 3.41
3740 3858 4.675976 TCCAAATTGATTGCATGGATCC 57.324 40.909 4.20 4.20 37.73 3.36
3743 3861 5.678955 TGAATCCAAATTGATTGCATGGA 57.321 34.783 5.46 5.46 43.79 3.41
3744 3862 5.277779 GCATGAATCCAAATTGATTGCATGG 60.278 40.000 18.95 0.00 38.68 3.66
3745 3863 5.527214 AGCATGAATCCAAATTGATTGCATG 59.473 36.000 16.35 16.35 39.70 4.06
3746 3864 5.680619 AGCATGAATCCAAATTGATTGCAT 58.319 33.333 0.00 0.00 37.73 3.96
3747 3865 5.092554 AGCATGAATCCAAATTGATTGCA 57.907 34.783 0.00 0.00 37.73 4.08
3748 3866 5.806286 CAAGCATGAATCCAAATTGATTGC 58.194 37.500 0.00 0.00 37.73 3.56
3749 3867 5.584649 AGCAAGCATGAATCCAAATTGATTG 59.415 36.000 0.00 0.00 35.15 2.67
3750 3868 5.741011 AGCAAGCATGAATCCAAATTGATT 58.259 33.333 0.00 0.00 37.66 2.57
3751 3869 5.353394 AGCAAGCATGAATCCAAATTGAT 57.647 34.783 0.00 0.00 0.00 2.57
3752 3870 4.811969 AGCAAGCATGAATCCAAATTGA 57.188 36.364 0.00 0.00 0.00 2.57
3753 3871 4.094294 CCAAGCAAGCATGAATCCAAATTG 59.906 41.667 0.00 0.00 0.00 2.32
3754 3872 4.258543 CCAAGCAAGCATGAATCCAAATT 58.741 39.130 0.00 0.00 0.00 1.82
3762 3880 1.820519 GATGGACCAAGCAAGCATGAA 59.179 47.619 0.00 0.00 0.00 2.57
3791 3913 6.618287 TGGACAAGTGTTCTCATTAACAAG 57.382 37.500 0.00 0.00 40.85 3.16
3802 3927 6.389091 TGCAAATGAATATGGACAAGTGTTC 58.611 36.000 0.00 0.00 0.00 3.18
3854 3979 6.012683 AGAGAATAGGCATGGCTGAGAATATT 60.013 38.462 30.53 20.21 0.00 1.28
3929 4055 8.855110 CAGACATATCCTCTGTTAGAACTGTAT 58.145 37.037 0.00 0.00 31.99 2.29
3930 4056 7.201830 GCAGACATATCCTCTGTTAGAACTGTA 60.202 40.741 8.20 0.00 37.96 2.74
3931 4057 6.406400 GCAGACATATCCTCTGTTAGAACTGT 60.406 42.308 8.20 0.00 37.96 3.55
3932 4058 5.982516 GCAGACATATCCTCTGTTAGAACTG 59.017 44.000 8.20 0.00 37.96 3.16
3933 4059 5.896678 AGCAGACATATCCTCTGTTAGAACT 59.103 40.000 8.20 0.00 37.96 3.01
3934 4060 5.982516 CAGCAGACATATCCTCTGTTAGAAC 59.017 44.000 8.20 0.00 37.96 3.01
3980 4109 2.113139 CCTTCGGGGTGTGCAAGT 59.887 61.111 0.00 0.00 0.00 3.16
3981 4110 1.672356 CTCCTTCGGGGTGTGCAAG 60.672 63.158 0.00 0.00 36.25 4.01
3988 4117 3.433740 GCTGAAATATTCTCCTTCGGGGT 60.434 47.826 0.00 0.00 36.25 4.95
3989 4118 3.142174 GCTGAAATATTCTCCTTCGGGG 58.858 50.000 0.00 0.00 35.37 5.73
3990 4119 3.808728 TGCTGAAATATTCTCCTTCGGG 58.191 45.455 0.00 0.00 0.00 5.14
3991 4120 4.260948 GCTTGCTGAAATATTCTCCTTCGG 60.261 45.833 0.00 0.00 0.00 4.30
3992 4121 4.574013 AGCTTGCTGAAATATTCTCCTTCG 59.426 41.667 0.00 0.00 0.00 3.79
3993 4122 6.448207 AAGCTTGCTGAAATATTCTCCTTC 57.552 37.500 0.00 0.00 0.00 3.46
3994 4123 6.628185 CAAAGCTTGCTGAAATATTCTCCTT 58.372 36.000 0.00 0.00 0.00 3.36
3995 4124 6.205101 CAAAGCTTGCTGAAATATTCTCCT 57.795 37.500 0.00 0.00 0.00 3.69
4024 4153 5.304101 AGGAGGATAACTCTGCTCTTATGTG 59.696 44.000 0.00 0.00 45.83 3.21
4027 4156 4.283212 GCAGGAGGATAACTCTGCTCTTAT 59.717 45.833 6.88 0.00 45.83 1.73
4054 4183 2.774439 ACGAATCCTGTTGTTTGCAC 57.226 45.000 0.00 0.00 0.00 4.57
4055 4184 3.734463 TCTACGAATCCTGTTGTTTGCA 58.266 40.909 0.00 0.00 0.00 4.08
4056 4185 4.742438 TTCTACGAATCCTGTTGTTTGC 57.258 40.909 0.00 0.00 0.00 3.68
4057 4186 6.539649 TCTTTCTACGAATCCTGTTGTTTG 57.460 37.500 0.00 0.00 0.00 2.93
4058 4187 7.497909 TCTTTCTTTCTACGAATCCTGTTGTTT 59.502 33.333 0.00 0.00 0.00 2.83
4059 4188 6.990349 TCTTTCTTTCTACGAATCCTGTTGTT 59.010 34.615 0.00 0.00 0.00 2.83
4060 4189 6.522054 TCTTTCTTTCTACGAATCCTGTTGT 58.478 36.000 0.00 0.00 0.00 3.32
4061 4190 7.385205 TCTTCTTTCTTTCTACGAATCCTGTTG 59.615 37.037 0.00 0.00 0.00 3.33
4062 4191 7.442656 TCTTCTTTCTTTCTACGAATCCTGTT 58.557 34.615 0.00 0.00 0.00 3.16
4063 4192 6.994221 TCTTCTTTCTTTCTACGAATCCTGT 58.006 36.000 0.00 0.00 0.00 4.00
4064 4193 7.316640 TCTCTTCTTTCTTTCTACGAATCCTG 58.683 38.462 0.00 0.00 0.00 3.86
4065 4194 7.177744 ACTCTCTTCTTTCTTTCTACGAATCCT 59.822 37.037 0.00 0.00 0.00 3.24
4066 4195 7.317390 ACTCTCTTCTTTCTTTCTACGAATCC 58.683 38.462 0.00 0.00 0.00 3.01
4067 4196 9.281075 GTACTCTCTTCTTTCTTTCTACGAATC 57.719 37.037 0.00 0.00 0.00 2.52
4068 4197 9.016438 AGTACTCTCTTCTTTCTTTCTACGAAT 57.984 33.333 0.00 0.00 0.00 3.34
4069 4198 8.393671 AGTACTCTCTTCTTTCTTTCTACGAA 57.606 34.615 0.00 0.00 0.00 3.85
4070 4199 7.982761 AGTACTCTCTTCTTTCTTTCTACGA 57.017 36.000 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.