Multiple sequence alignment - TraesCS7B01G347700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G347700 chr7B 100.000 2588 0 0 1 2588 603991550 603994137 0.000000e+00 4780.0
1 TraesCS7B01G347700 chr7B 94.418 842 45 2 39 879 603623850 603624690 0.000000e+00 1293.0
2 TraesCS7B01G347700 chr7B 91.123 935 63 11 1667 2588 603673061 603673988 0.000000e+00 1249.0
3 TraesCS7B01G347700 chr7B 93.082 477 30 1 1172 1648 603663710 603664183 0.000000e+00 695.0
4 TraesCS7B01G347700 chr7B 90.635 299 9 7 894 1188 603663491 603663774 1.880000e-101 379.0
5 TraesCS7B01G347700 chr7B 85.387 349 45 4 825 1167 603944114 603944462 8.810000e-95 357.0
6 TraesCS7B01G347700 chr7B 83.776 339 48 3 886 1217 603835263 603835601 5.380000e-82 315.0
7 TraesCS7B01G347700 chr7B 75.945 291 56 9 2306 2584 684374374 684374662 1.250000e-28 137.0
8 TraesCS7B01G347700 chr7D 91.890 1196 62 12 1 1176 556447528 556448708 0.000000e+00 1639.0
9 TraesCS7B01G347700 chr7D 94.412 519 23 3 1153 1668 556448640 556449155 0.000000e+00 793.0
10 TraesCS7B01G347700 chr7D 79.104 536 64 27 1699 2208 556449268 556449781 2.480000e-85 326.0
11 TraesCS7B01G347700 chr7D 78.231 294 54 6 2298 2584 375310945 375310655 2.050000e-41 180.0
12 TraesCS7B01G347700 chr7A 88.082 1074 81 25 685 1736 642159503 642160551 0.000000e+00 1230.0
13 TraesCS7B01G347700 chr7A 80.996 542 79 12 7 526 634328121 634327582 2.400000e-110 409.0
14 TraesCS7B01G347700 chr3B 80.000 540 83 16 7 523 519363568 519364105 2.430000e-100 375.0
15 TraesCS7B01G347700 chr3B 86.772 189 21 2 526 713 156874155 156874340 9.390000e-50 207.0
16 TraesCS7B01G347700 chr3B 86.243 189 22 2 525 712 507848978 507849163 4.370000e-48 202.0
17 TraesCS7B01G347700 chr3B 91.489 47 4 0 1687 1733 826722348 826722302 5.980000e-07 65.8
18 TraesCS7B01G347700 chr6D 79.963 534 83 13 7 521 56302570 56302042 3.150000e-99 372.0
19 TraesCS7B01G347700 chr6D 78.063 351 49 17 196 523 420619859 420620204 2.030000e-46 196.0
20 TraesCS7B01G347700 chr5B 79.742 543 84 15 7 526 505219506 505218967 1.130000e-98 370.0
21 TraesCS7B01G347700 chr5B 78.700 554 83 23 1 523 617702239 617702788 1.150000e-88 337.0
22 TraesCS7B01G347700 chr5B 87.368 190 20 2 525 713 45027387 45027573 5.610000e-52 215.0
23 TraesCS7B01G347700 chr5B 86.224 196 23 2 525 719 532775960 532776152 2.610000e-50 209.0
24 TraesCS7B01G347700 chr5B 86.387 191 22 2 525 714 505218865 505218678 3.380000e-49 206.0
25 TraesCS7B01G347700 chr5B 75.085 293 43 13 2305 2584 170600000 170599725 2.720000e-20 110.0
26 TraesCS7B01G347700 chr5B 91.111 45 4 0 1689 1733 598331083 598331127 7.730000e-06 62.1
27 TraesCS7B01G347700 chr2D 79.204 553 78 17 1 523 290746344 290746889 1.470000e-92 350.0
28 TraesCS7B01G347700 chr2D 77.818 275 47 10 2292 2556 578925983 578925713 9.590000e-35 158.0
29 TraesCS7B01G347700 chr2D 79.048 210 37 4 2384 2588 637539828 637540035 1.250000e-28 137.0
30 TraesCS7B01G347700 chr2D 75.333 300 59 11 2267 2556 152055468 152055762 2.090000e-26 130.0
31 TraesCS7B01G347700 chr2D 82.353 68 10 1 1689 1754 427150447 427150380 1.000000e-04 58.4
32 TraesCS7B01G347700 chr4D 78.810 538 92 10 7 523 497539070 497539606 2.470000e-90 342.0
33 TraesCS7B01G347700 chr4D 75.439 342 70 9 2253 2583 484422448 484422110 1.240000e-33 154.0
34 TraesCS7B01G347700 chr3A 78.479 539 89 16 7 526 739738971 739738441 6.910000e-86 327.0
35 TraesCS7B01G347700 chr3A 77.273 308 54 11 2292 2588 724082772 724082470 1.590000e-37 167.0
36 TraesCS7B01G347700 chr3A 87.500 64 6 1 1688 1749 578876358 578876295 3.570000e-09 73.1
37 TraesCS7B01G347700 chr2B 78.300 553 82 21 7 526 235579690 235579143 3.210000e-84 322.0
38 TraesCS7B01G347700 chr2B 93.478 46 3 0 1688 1733 571917364 571917319 4.620000e-08 69.4
39 TraesCS7B01G347700 chr4B 78.185 518 82 13 3 492 39200891 39201405 4.190000e-78 302.0
40 TraesCS7B01G347700 chr4B 80.719 306 32 10 242 523 143305796 143306098 2.020000e-51 213.0
41 TraesCS7B01G347700 chr4B 86.387 191 22 3 525 714 574003924 574003737 3.380000e-49 206.0
42 TraesCS7B01G347700 chr4B 76.136 440 76 19 37 452 541474271 541474705 1.210000e-48 204.0
43 TraesCS7B01G347700 chr1D 78.947 456 61 18 98 523 381048813 381049263 7.050000e-71 278.0
44 TraesCS7B01G347700 chr1D 77.666 497 72 18 60 523 479536019 479536509 1.530000e-67 267.0
45 TraesCS7B01G347700 chr1B 78.222 450 80 7 10 442 34326959 34326511 3.280000e-69 272.0
46 TraesCS7B01G347700 chr1B 85.714 196 23 3 527 720 12731513 12731321 4.370000e-48 202.0
47 TraesCS7B01G347700 chr3D 81.579 304 32 12 240 523 5389130 5389429 2.000000e-56 230.0
48 TraesCS7B01G347700 chr3D 76.546 469 79 18 7 452 123318715 123319175 7.200000e-56 228.0
49 TraesCS7B01G347700 chr3D 75.228 549 93 18 13 526 50548693 50548153 1.210000e-53 220.0
50 TraesCS7B01G347700 chr1A 80.952 315 37 8 232 526 499735430 499735119 7.200000e-56 228.0
51 TraesCS7B01G347700 chr5A 79.255 188 30 6 2272 2453 664820451 664820267 3.500000e-24 122.0
52 TraesCS7B01G347700 chr5A 91.304 46 4 0 1689 1734 190875790 190875835 2.150000e-06 63.9
53 TraesCS7B01G347700 chr5D 78.351 194 33 6 2263 2449 175780452 175780643 1.630000e-22 117.0
54 TraesCS7B01G347700 chr4A 91.304 46 4 0 1688 1733 474495815 474495770 2.150000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G347700 chr7B 603991550 603994137 2587 False 4780.000000 4780 100.000000 1 2588 1 chr7B.!!$F5 2587
1 TraesCS7B01G347700 chr7B 603623850 603624690 840 False 1293.000000 1293 94.418000 39 879 1 chr7B.!!$F1 840
2 TraesCS7B01G347700 chr7B 603673061 603673988 927 False 1249.000000 1249 91.123000 1667 2588 1 chr7B.!!$F2 921
3 TraesCS7B01G347700 chr7B 603663491 603664183 692 False 537.000000 695 91.858500 894 1648 2 chr7B.!!$F7 754
4 TraesCS7B01G347700 chr7D 556447528 556449781 2253 False 919.333333 1639 88.468667 1 2208 3 chr7D.!!$F1 2207
5 TraesCS7B01G347700 chr7A 642159503 642160551 1048 False 1230.000000 1230 88.082000 685 1736 1 chr7A.!!$F1 1051
6 TraesCS7B01G347700 chr7A 634327582 634328121 539 True 409.000000 409 80.996000 7 526 1 chr7A.!!$R1 519
7 TraesCS7B01G347700 chr3B 519363568 519364105 537 False 375.000000 375 80.000000 7 523 1 chr3B.!!$F3 516
8 TraesCS7B01G347700 chr6D 56302042 56302570 528 True 372.000000 372 79.963000 7 521 1 chr6D.!!$R1 514
9 TraesCS7B01G347700 chr5B 617702239 617702788 549 False 337.000000 337 78.700000 1 523 1 chr5B.!!$F4 522
10 TraesCS7B01G347700 chr5B 505218678 505219506 828 True 288.000000 370 83.064500 7 714 2 chr5B.!!$R2 707
11 TraesCS7B01G347700 chr2D 290746344 290746889 545 False 350.000000 350 79.204000 1 523 1 chr2D.!!$F2 522
12 TraesCS7B01G347700 chr4D 497539070 497539606 536 False 342.000000 342 78.810000 7 523 1 chr4D.!!$F1 516
13 TraesCS7B01G347700 chr3A 739738441 739738971 530 True 327.000000 327 78.479000 7 526 1 chr3A.!!$R3 519
14 TraesCS7B01G347700 chr2B 235579143 235579690 547 True 322.000000 322 78.300000 7 526 1 chr2B.!!$R1 519
15 TraesCS7B01G347700 chr4B 39200891 39201405 514 False 302.000000 302 78.185000 3 492 1 chr4B.!!$F1 489
16 TraesCS7B01G347700 chr3D 50548153 50548693 540 True 220.000000 220 75.228000 13 526 1 chr3D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 418 0.038166 ATGGATCGTGTGCTGGGTTT 59.962 50.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2620 0.389948 ATCTCACCGCCGAAGTCAAC 60.39 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 68 4.612412 GGTCACCGGAACCACGCA 62.612 66.667 21.11 0.00 0.00 5.24
223 238 7.889873 TTGGAAACCAGTCTATTCAAGAAAA 57.110 32.000 0.00 0.00 35.47 2.29
380 418 0.038166 ATGGATCGTGTGCTGGGTTT 59.962 50.000 0.00 0.00 0.00 3.27
593 746 8.001881 TGTTTGTATTTTTACTTCTTGGCTGA 57.998 30.769 0.00 0.00 0.00 4.26
628 781 0.961358 AGGCTAGCGTTCGACTGTCT 60.961 55.000 9.00 0.00 0.00 3.41
634 790 2.546778 AGCGTTCGACTGTCTTTTCAA 58.453 42.857 6.21 0.00 0.00 2.69
840 1001 9.049523 CATGCATTGAGTAGTTTACATAGATGT 57.950 33.333 0.00 0.08 44.48 3.06
879 1040 4.797743 TCAGTGATGACTAGCACCTAGAT 58.202 43.478 6.29 0.00 44.08 1.98
880 1041 4.824537 TCAGTGATGACTAGCACCTAGATC 59.175 45.833 6.29 1.35 44.08 2.75
881 1042 4.826733 CAGTGATGACTAGCACCTAGATCT 59.173 45.833 0.00 0.00 44.08 2.75
882 1043 4.826733 AGTGATGACTAGCACCTAGATCTG 59.173 45.833 5.18 0.00 44.08 2.90
883 1044 4.824537 GTGATGACTAGCACCTAGATCTGA 59.175 45.833 5.18 0.00 37.24 3.27
884 1045 5.476599 GTGATGACTAGCACCTAGATCTGAT 59.523 44.000 5.18 0.00 37.24 2.90
962 1123 4.098044 ACAGTTCTCTCGTGTTTCTTCTCA 59.902 41.667 0.00 0.00 0.00 3.27
1101 1265 2.747855 CGCTGTCCTTCCCTTGGC 60.748 66.667 0.00 0.00 0.00 4.52
1163 1327 2.044352 GGCCATACCACCACCACC 60.044 66.667 0.00 0.00 38.86 4.61
1164 1328 2.760477 GCCATACCACCACCACCA 59.240 61.111 0.00 0.00 0.00 4.17
1165 1329 1.677633 GCCATACCACCACCACCAC 60.678 63.158 0.00 0.00 0.00 4.16
1166 1330 1.001393 CCATACCACCACCACCACC 60.001 63.158 0.00 0.00 0.00 4.61
1167 1331 1.764422 CATACCACCACCACCACCA 59.236 57.895 0.00 0.00 0.00 4.17
1168 1332 0.608035 CATACCACCACCACCACCAC 60.608 60.000 0.00 0.00 0.00 4.16
1169 1333 1.785353 ATACCACCACCACCACCACC 61.785 60.000 0.00 0.00 0.00 4.61
1170 1334 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1171 1335 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1172 1336 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1173 1337 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1174 1338 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1175 1339 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1176 1340 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1177 1341 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1178 1342 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1179 1343 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1180 1344 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1181 1345 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1182 1346 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1183 1347 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1184 1348 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1185 1349 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1186 1350 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1187 1351 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1188 1352 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
1189 1353 4.947147 CACCACCACCACCACCGG 62.947 72.222 0.00 0.00 0.00 5.28
1367 1561 1.067295 TCCATGGACTGCAAAGAGGT 58.933 50.000 11.44 0.00 0.00 3.85
1412 1606 2.360475 GGAGTGCAAGACCCCAGC 60.360 66.667 0.00 0.00 0.00 4.85
1419 1613 0.960364 GCAAGACCCCAGCGATCAAA 60.960 55.000 0.00 0.00 0.00 2.69
1533 1727 3.350612 GCGTACAGCCGTGGCAAA 61.351 61.111 14.29 0.00 44.88 3.68
1661 1855 5.801531 TGTACTCTATGGTCAACTGTGTT 57.198 39.130 0.00 0.00 0.00 3.32
1676 1884 3.165890 CTGTGTTTGCTTGCATGTATCG 58.834 45.455 1.14 0.00 0.00 2.92
1703 1988 2.700897 AGGATGTACTTCCTCCAATCCG 59.299 50.000 21.63 0.00 42.71 4.18
1854 2143 8.659925 TTCTTATTGTACCAACTTTTCGTGTA 57.340 30.769 0.00 0.00 0.00 2.90
2020 2327 3.731766 AAAGCCCGCCCGCCATTAT 62.732 57.895 0.00 0.00 0.00 1.28
2021 2328 3.731766 AAGCCCGCCCGCCATTATT 62.732 57.895 0.00 0.00 0.00 1.40
2022 2329 2.281900 GCCCGCCCGCCATTATTA 60.282 61.111 0.00 0.00 0.00 0.98
2064 2372 1.530013 CCTTTGCTGGGTTGGAGCAG 61.530 60.000 0.00 0.00 46.81 4.24
2065 2373 2.151049 CTTTGCTGGGTTGGAGCAGC 62.151 60.000 0.00 0.00 46.81 5.25
2210 2522 2.190578 CACCCCGATCTGGCTTCC 59.809 66.667 0.00 0.00 35.87 3.46
2221 2534 1.899437 CTGGCTTCCTTGGTAGGCGA 61.899 60.000 13.35 4.41 41.69 5.54
2225 2538 1.571919 CTTCCTTGGTAGGCGATTCG 58.428 55.000 0.62 0.62 41.69 3.34
2243 2556 2.504519 CCTTGGCCGGCCTACTAC 59.495 66.667 43.34 19.10 36.94 2.73
2244 2557 2.363975 CCTTGGCCGGCCTACTACA 61.364 63.158 43.34 22.40 36.94 2.74
2291 2604 0.959553 GATCTTCGGGAGCGTCCATA 59.040 55.000 6.41 0.00 38.64 2.74
2305 2618 3.006323 GCGTCCATATCTCAAGATCCAGT 59.994 47.826 0.00 0.00 36.05 4.00
2307 2620 4.560311 CGTCCATATCTCAAGATCCAGTGG 60.560 50.000 1.40 1.40 36.05 4.00
2315 2628 3.999663 CTCAAGATCCAGTGGTTGACTTC 59.000 47.826 9.54 0.00 29.75 3.01
2319 2632 2.317609 CCAGTGGTTGACTTCGGCG 61.318 63.158 0.00 0.00 29.75 6.46
2322 2635 2.280524 TGGTTGACTTCGGCGGTG 60.281 61.111 7.21 2.39 0.00 4.94
2330 2643 1.741401 CTTCGGCGGTGAGATGCAA 60.741 57.895 7.21 0.00 0.00 4.08
2340 2653 3.303329 CGGTGAGATGCAAATTATGGACG 60.303 47.826 0.00 0.00 29.34 4.79
2356 2669 3.411446 TGGACGAAGACTTTTGATGCAT 58.589 40.909 0.00 0.00 0.00 3.96
2357 2670 3.436704 TGGACGAAGACTTTTGATGCATC 59.563 43.478 20.14 20.14 0.00 3.91
2372 2685 0.454600 GCATCTGGATGGTTGTGCAG 59.545 55.000 11.82 0.00 39.16 4.41
2373 2686 1.830279 CATCTGGATGGTTGTGCAGT 58.170 50.000 2.88 0.00 38.53 4.40
2400 2713 0.833287 ACCACATGTAGCTGCTAGGG 59.167 55.000 10.13 9.23 0.00 3.53
2455 2768 1.906105 TTCGATGGTGGTGCTACCCC 61.906 60.000 2.28 4.94 40.09 4.95
2457 2770 1.922821 GATGGTGGTGCTACCCCAT 59.077 57.895 18.85 18.85 45.72 4.00
2461 2774 1.136828 GGTGGTGCTACCCCATCATA 58.863 55.000 3.33 0.00 37.50 2.15
2462 2775 1.705186 GGTGGTGCTACCCCATCATAT 59.295 52.381 3.33 0.00 37.50 1.78
2491 2804 3.416156 AGCTCTTGGTTGAAAGCCTAAG 58.584 45.455 0.00 0.00 35.32 2.18
2494 2807 3.751518 TCTTGGTTGAAAGCCTAAGTCC 58.248 45.455 0.00 0.00 0.00 3.85
2500 2813 2.244695 TGAAAGCCTAAGTCCGAGTCA 58.755 47.619 0.00 0.00 0.00 3.41
2523 2836 4.589908 AGCTGGTTATACCTGGAAAGTTG 58.410 43.478 0.00 0.00 39.58 3.16
2524 2837 4.288626 AGCTGGTTATACCTGGAAAGTTGA 59.711 41.667 0.00 0.00 39.58 3.18
2525 2838 4.636206 GCTGGTTATACCTGGAAAGTTGAG 59.364 45.833 0.00 0.00 39.58 3.02
2551 2864 2.248487 ACGTCGTTATCTCGTTGAAGC 58.752 47.619 0.00 0.00 34.07 3.86
2561 2874 3.738982 TCTCGTTGAAGCCATTTCTTGA 58.261 40.909 0.00 0.00 36.71 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 90 6.946009 TGAATAGCCCAAAACTTAAGCTACTT 59.054 34.615 1.29 0.00 38.75 2.24
223 238 2.512286 CCGCTGTCGCACCATCAT 60.512 61.111 0.00 0.00 35.30 2.45
314 336 2.861261 TCTACTCCTGGACTACCTCCT 58.139 52.381 0.00 0.00 40.26 3.69
380 418 1.070786 GAGCCTTCCACGAACCACA 59.929 57.895 0.00 0.00 0.00 4.17
593 746 7.442656 ACGCTAGCCTTTACACATAAGAATAT 58.557 34.615 9.66 0.00 0.00 1.28
601 754 2.094390 TCGAACGCTAGCCTTTACACAT 60.094 45.455 9.66 0.00 0.00 3.21
727 888 7.162082 GCTATTCATAGTGGGCAGTAACTTAT 58.838 38.462 0.00 0.00 32.96 1.73
840 1001 5.901552 TCACTGAAATATGCGTAGATGTGA 58.098 37.500 0.00 0.00 0.00 3.58
879 1040 4.556697 TCTTTATAGGCACCCAGATCAGA 58.443 43.478 0.00 0.00 0.00 3.27
880 1041 4.963318 TCTTTATAGGCACCCAGATCAG 57.037 45.455 0.00 0.00 0.00 2.90
881 1042 4.505566 GCATCTTTATAGGCACCCAGATCA 60.506 45.833 0.00 0.00 0.00 2.92
882 1043 4.006319 GCATCTTTATAGGCACCCAGATC 58.994 47.826 0.00 0.00 0.00 2.75
883 1044 3.395607 TGCATCTTTATAGGCACCCAGAT 59.604 43.478 0.00 0.00 0.00 2.90
884 1045 2.777114 TGCATCTTTATAGGCACCCAGA 59.223 45.455 0.00 0.00 0.00 3.86
962 1123 0.695347 AGCAAACCTTGAGCTAGCCT 59.305 50.000 12.13 0.00 36.73 4.58
1163 1327 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1164 1328 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1165 1329 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1166 1330 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1167 1331 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1168 1332 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1169 1333 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1170 1334 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1171 1335 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
1172 1336 4.947147 CCGGTGGTGGTGGTGGTG 62.947 72.222 0.00 0.00 0.00 4.17
1192 1356 4.202574 TGGTGGTGGTGGTGCCTG 62.203 66.667 0.00 0.00 38.35 4.85
1193 1357 4.204028 GTGGTGGTGGTGGTGCCT 62.204 66.667 0.00 0.00 38.35 4.75
1195 1359 4.514585 TGGTGGTGGTGGTGGTGC 62.515 66.667 0.00 0.00 0.00 5.01
1196 1360 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1197 1361 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1198 1362 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1199 1363 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1200 1364 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1201 1365 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1202 1366 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1203 1367 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1204 1368 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
1205 1369 4.947147 CCGGTGGTGGTGGTGGTG 62.947 72.222 0.00 0.00 0.00 4.17
1367 1561 1.536072 GGCTCTCATCGTTGTCGCATA 60.536 52.381 0.00 0.00 36.96 3.14
1403 1597 1.073923 ACTTTTTGATCGCTGGGGTCT 59.926 47.619 6.54 0.00 0.00 3.85
1412 1606 1.701704 GGCCTTGCACTTTTTGATCG 58.298 50.000 0.00 0.00 0.00 3.69
1419 1613 2.555547 GCAGACGGCCTTGCACTTT 61.556 57.895 16.10 0.00 36.11 2.66
1533 1727 0.940126 CACAGTCGTTCTTGCAGCTT 59.060 50.000 0.00 0.00 0.00 3.74
1599 1793 1.224069 CCGGTCAGCACTCAACACTG 61.224 60.000 0.00 0.00 0.00 3.66
1661 1855 1.006086 CCGTCGATACATGCAAGCAA 58.994 50.000 0.00 0.00 0.00 3.91
1755 2040 4.402793 ACTCCCTCCGATCCATATTATTCG 59.597 45.833 0.00 0.00 0.00 3.34
1756 2041 5.941555 ACTCCCTCCGATCCATATTATTC 57.058 43.478 0.00 0.00 0.00 1.75
1854 2143 5.213891 TGTGCCAGATTCATCATACGTAT 57.786 39.130 1.14 1.14 0.00 3.06
1933 2223 2.167398 TTTCTCTCCCGGGTTGCTCG 62.167 60.000 22.86 4.53 0.00 5.03
1938 2228 0.400594 CAAGGTTTCTCTCCCGGGTT 59.599 55.000 22.86 0.00 0.00 4.11
2014 2321 1.142060 TCCCACCGCCACTAATAATGG 59.858 52.381 0.00 0.00 40.50 3.16
2020 2327 2.751688 GGTTCCCACCGCCACTAA 59.248 61.111 0.00 0.00 31.60 2.24
2100 2408 1.222936 GGCTGTGCATCTAGGCTGT 59.777 57.895 12.72 0.00 36.63 4.40
2106 2414 2.796193 ATCGCCGGCTGTGCATCTA 61.796 57.895 26.68 0.43 0.00 1.98
2138 2447 4.415150 CCTCCACACTGCCGCCAT 62.415 66.667 0.00 0.00 0.00 4.40
2243 2556 3.119291 GACTAGCGTTGTCATGGATCTG 58.881 50.000 0.00 0.00 34.80 2.90
2244 2557 2.760650 TGACTAGCGTTGTCATGGATCT 59.239 45.455 5.59 0.00 39.23 2.75
2291 2604 3.843027 AGTCAACCACTGGATCTTGAGAT 59.157 43.478 0.71 0.00 33.43 2.75
2305 2618 2.280524 CACCGCCGAAGTCAACCA 60.281 61.111 0.00 0.00 0.00 3.67
2307 2620 0.389948 ATCTCACCGCCGAAGTCAAC 60.390 55.000 0.00 0.00 0.00 3.18
2315 2628 1.013596 TAATTTGCATCTCACCGCCG 58.986 50.000 0.00 0.00 0.00 6.46
2319 2632 3.876914 TCGTCCATAATTTGCATCTCACC 59.123 43.478 0.00 0.00 0.00 4.02
2322 2635 5.525378 AGTCTTCGTCCATAATTTGCATCTC 59.475 40.000 0.00 0.00 0.00 2.75
2330 2643 6.150976 TGCATCAAAAGTCTTCGTCCATAATT 59.849 34.615 0.00 0.00 0.00 1.40
2340 2653 5.450137 CCATCCAGATGCATCAAAAGTCTTC 60.450 44.000 27.81 0.00 37.49 2.87
2356 2669 1.977854 ACTACTGCACAACCATCCAGA 59.022 47.619 0.00 0.00 0.00 3.86
2357 2670 2.079158 CACTACTGCACAACCATCCAG 58.921 52.381 0.00 0.00 0.00 3.86
2400 2713 3.039134 CCACCACTTTCCCGCAAC 58.961 61.111 0.00 0.00 0.00 4.17
2431 2744 0.320771 AGCACCACCATCGAAGTCAC 60.321 55.000 0.00 0.00 0.00 3.67
2455 2768 4.755629 CCAAGAGCTCAAGACCATATGATG 59.244 45.833 17.77 0.00 0.00 3.07
2457 2770 3.776969 ACCAAGAGCTCAAGACCATATGA 59.223 43.478 17.77 0.00 0.00 2.15
2461 2774 2.373169 TCAACCAAGAGCTCAAGACCAT 59.627 45.455 17.77 0.00 0.00 3.55
2462 2775 1.768275 TCAACCAAGAGCTCAAGACCA 59.232 47.619 17.77 0.00 0.00 4.02
2491 2804 2.674796 ATAACCAGCTTGACTCGGAC 57.325 50.000 0.00 0.00 0.00 4.79
2494 2807 3.448686 CAGGTATAACCAGCTTGACTCG 58.551 50.000 0.00 0.00 41.95 4.18
2500 2813 4.929146 ACTTTCCAGGTATAACCAGCTT 57.071 40.909 0.00 0.00 41.95 3.74
2523 2836 5.982056 ACGAGATAACGACGTAAAAACTC 57.018 39.130 0.00 5.82 38.47 3.01
2524 2837 5.914635 TCAACGAGATAACGACGTAAAAACT 59.085 36.000 0.00 0.00 39.31 2.66
2525 2838 6.127498 TCAACGAGATAACGACGTAAAAAC 57.873 37.500 0.00 0.00 39.31 2.43
2561 2874 9.927081 ACCTTGAAGAATCAATCCAAGTATATT 57.073 29.630 0.00 0.00 44.29 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.