Multiple sequence alignment - TraesCS7B01G346500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G346500 | chr7B | 100.000 | 4153 | 0 | 0 | 1 | 4153 | 602303636 | 602299484 | 0.000000e+00 | 7670.0 |
1 | TraesCS7B01G346500 | chr7B | 86.093 | 755 | 60 | 19 | 1681 | 2434 | 670778377 | 670777667 | 0.000000e+00 | 771.0 |
2 | TraesCS7B01G346500 | chr7B | 89.241 | 316 | 24 | 7 | 1931 | 2246 | 648774874 | 648774569 | 1.810000e-103 | 387.0 |
3 | TraesCS7B01G346500 | chr7B | 79.842 | 253 | 43 | 7 | 331 | 580 | 689964297 | 689964050 | 1.190000e-40 | 178.0 |
4 | TraesCS7B01G346500 | chr7B | 88.660 | 97 | 7 | 4 | 3766 | 3859 | 522328507 | 522328412 | 9.430000e-22 | 115.0 |
5 | TraesCS7B01G346500 | chr7B | 89.286 | 84 | 8 | 1 | 3761 | 3843 | 100382392 | 100382309 | 2.040000e-18 | 104.0 |
6 | TraesCS7B01G346500 | chr7D | 87.882 | 3078 | 213 | 77 | 5 | 3018 | 554562521 | 554565502 | 0.000000e+00 | 3470.0 |
7 | TraesCS7B01G346500 | chr7D | 87.871 | 775 | 41 | 19 | 3012 | 3746 | 554565571 | 554566332 | 0.000000e+00 | 861.0 |
8 | TraesCS7B01G346500 | chr7D | 93.355 | 301 | 20 | 0 | 3853 | 4153 | 554566844 | 554567144 | 2.950000e-121 | 446.0 |
9 | TraesCS7B01G346500 | chr7D | 86.842 | 76 | 8 | 2 | 3632 | 3705 | 447133078 | 447133153 | 2.660000e-12 | 84.2 |
10 | TraesCS7B01G346500 | chr7A | 86.012 | 815 | 76 | 27 | 626 | 1427 | 641428816 | 641428027 | 0.000000e+00 | 839.0 |
11 | TraesCS7B01G346500 | chr7A | 84.795 | 855 | 76 | 33 | 1461 | 2308 | 641428027 | 641427220 | 0.000000e+00 | 809.0 |
12 | TraesCS7B01G346500 | chr7A | 87.040 | 679 | 53 | 16 | 2305 | 2969 | 641426899 | 641426242 | 0.000000e+00 | 734.0 |
13 | TraesCS7B01G346500 | chr7A | 90.686 | 408 | 24 | 7 | 3012 | 3409 | 641426045 | 641425642 | 7.910000e-147 | 531.0 |
14 | TraesCS7B01G346500 | chr7A | 86.792 | 371 | 30 | 8 | 1875 | 2245 | 711201188 | 711200837 | 3.010000e-106 | 396.0 |
15 | TraesCS7B01G346500 | chr7A | 77.062 | 388 | 65 | 19 | 243 | 618 | 591874320 | 591874695 | 7.040000e-48 | 202.0 |
16 | TraesCS7B01G346500 | chr4A | 87.332 | 371 | 27 | 8 | 1875 | 2245 | 448763482 | 448763132 | 1.390000e-109 | 407.0 |
17 | TraesCS7B01G346500 | chr4A | 76.115 | 314 | 61 | 12 | 311 | 615 | 595400446 | 595400138 | 7.190000e-33 | 152.0 |
18 | TraesCS7B01G346500 | chr4A | 84.375 | 96 | 12 | 3 | 3761 | 3854 | 695116239 | 695116333 | 1.590000e-14 | 91.6 |
19 | TraesCS7B01G346500 | chr3A | 87.166 | 374 | 29 | 7 | 1872 | 2245 | 299758672 | 299759026 | 1.390000e-109 | 407.0 |
20 | TraesCS7B01G346500 | chr3A | 88.889 | 117 | 11 | 1 | 3436 | 3550 | 57888358 | 57888474 | 4.330000e-30 | 143.0 |
21 | TraesCS7B01G346500 | chr3A | 86.458 | 96 | 11 | 2 | 3762 | 3855 | 44305535 | 44305440 | 2.040000e-18 | 104.0 |
22 | TraesCS7B01G346500 | chr3A | 92.958 | 71 | 3 | 2 | 3637 | 3705 | 538858263 | 538858333 | 7.350000e-18 | 102.0 |
23 | TraesCS7B01G346500 | chr3A | 87.671 | 73 | 7 | 1 | 3634 | 3704 | 743837299 | 743837371 | 2.660000e-12 | 84.2 |
24 | TraesCS7B01G346500 | chr2A | 87.332 | 371 | 28 | 7 | 1875 | 2245 | 39493859 | 39493508 | 1.390000e-109 | 407.0 |
25 | TraesCS7B01G346500 | chr2A | 87.166 | 374 | 29 | 7 | 1872 | 2245 | 755547830 | 755548184 | 1.390000e-109 | 407.0 |
26 | TraesCS7B01G346500 | chr2A | 86.735 | 98 | 8 | 5 | 3766 | 3859 | 161623684 | 161623780 | 2.040000e-18 | 104.0 |
27 | TraesCS7B01G346500 | chr2A | 81.667 | 120 | 18 | 3 | 461 | 579 | 748435942 | 748436058 | 3.420000e-16 | 97.1 |
28 | TraesCS7B01G346500 | chr2B | 86.792 | 371 | 30 | 8 | 1875 | 2245 | 281069231 | 281068880 | 3.010000e-106 | 396.0 |
29 | TraesCS7B01G346500 | chr2B | 90.217 | 92 | 5 | 4 | 3771 | 3859 | 93768320 | 93768230 | 2.620000e-22 | 117.0 |
30 | TraesCS7B01G346500 | chr4D | 80.822 | 146 | 25 | 2 | 435 | 579 | 96628373 | 96628516 | 1.220000e-20 | 111.0 |
31 | TraesCS7B01G346500 | chr4D | 90.361 | 83 | 6 | 2 | 3625 | 3705 | 322661543 | 322661461 | 1.580000e-19 | 108.0 |
32 | TraesCS7B01G346500 | chr4D | 91.358 | 81 | 2 | 3 | 3625 | 3700 | 47492617 | 47492697 | 5.680000e-19 | 106.0 |
33 | TraesCS7B01G346500 | chr6B | 96.923 | 65 | 2 | 0 | 3766 | 3830 | 457776930 | 457776994 | 4.390000e-20 | 110.0 |
34 | TraesCS7B01G346500 | chr6B | 86.458 | 96 | 10 | 3 | 3767 | 3859 | 14774433 | 14774528 | 7.350000e-18 | 102.0 |
35 | TraesCS7B01G346500 | chr6B | 74.744 | 293 | 37 | 25 | 210 | 488 | 150770944 | 150771213 | 3.420000e-16 | 97.1 |
36 | TraesCS7B01G346500 | chrUn | 90.361 | 83 | 6 | 2 | 3625 | 3705 | 92510152 | 92510234 | 1.580000e-19 | 108.0 |
37 | TraesCS7B01G346500 | chr4B | 80.435 | 138 | 25 | 1 | 435 | 572 | 116485921 | 116486056 | 2.040000e-18 | 104.0 |
38 | TraesCS7B01G346500 | chr4B | 72.105 | 380 | 85 | 20 | 210 | 581 | 4545392 | 4545758 | 1.230000e-15 | 95.3 |
39 | TraesCS7B01G346500 | chr5A | 86.957 | 92 | 9 | 3 | 3771 | 3859 | 692700910 | 692700819 | 2.640000e-17 | 100.0 |
40 | TraesCS7B01G346500 | chr3B | 91.781 | 73 | 3 | 3 | 3636 | 3705 | 538815448 | 538815376 | 9.500000e-17 | 99.0 |
41 | TraesCS7B01G346500 | chr2D | 86.517 | 89 | 10 | 2 | 3619 | 3705 | 408459898 | 408459810 | 3.420000e-16 | 97.1 |
42 | TraesCS7B01G346500 | chr6D | 81.197 | 117 | 18 | 4 | 457 | 572 | 39070174 | 39070287 | 1.590000e-14 | 91.6 |
43 | TraesCS7B01G346500 | chr1B | 86.842 | 76 | 6 | 3 | 3634 | 3705 | 127981744 | 127981819 | 9.570000e-12 | 82.4 |
44 | TraesCS7B01G346500 | chr5D | 93.023 | 43 | 0 | 3 | 435 | 475 | 215879421 | 215879380 | 4.480000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G346500 | chr7B | 602299484 | 602303636 | 4152 | True | 7670.000000 | 7670 | 100.000000 | 1 | 4153 | 1 | chr7B.!!$R3 | 4152 |
1 | TraesCS7B01G346500 | chr7B | 670777667 | 670778377 | 710 | True | 771.000000 | 771 | 86.093000 | 1681 | 2434 | 1 | chr7B.!!$R5 | 753 |
2 | TraesCS7B01G346500 | chr7D | 554562521 | 554567144 | 4623 | False | 1592.333333 | 3470 | 89.702667 | 5 | 4153 | 3 | chr7D.!!$F2 | 4148 |
3 | TraesCS7B01G346500 | chr7A | 641425642 | 641428816 | 3174 | True | 728.250000 | 839 | 87.133250 | 626 | 3409 | 4 | chr7A.!!$R2 | 2783 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
692 | 730 | 0.598158 | TCGGAAACCACGAAGGAACG | 60.598 | 55.0 | 5.7 | 0.0 | 41.22 | 3.95 | F |
1230 | 1276 | 0.340208 | CCACCTCCCCTCTCCTACTT | 59.660 | 60.0 | 0.0 | 0.0 | 0.00 | 2.24 | F |
1851 | 1912 | 0.469917 | AGGGTGTCAGATTATGCCGG | 59.530 | 55.0 | 0.0 | 0.0 | 0.00 | 6.13 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2532 | 2931 | 0.172578 | TTGTGTATCTCTCGCCGTGG | 59.827 | 55.0 | 0.00 | 0.0 | 0.0 | 4.94 | R |
2641 | 3040 | 0.250234 | ATGGATGCGCTACACACTGT | 59.750 | 50.0 | 9.73 | 0.0 | 0.0 | 3.55 | R |
3612 | 4201 | 0.179056 | CACTATGGATTTCGGGCGGT | 60.179 | 55.0 | 0.00 | 0.0 | 0.0 | 5.68 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 4.114997 | CGCCGCCGCCTCATTTTT | 62.115 | 61.111 | 0.00 | 0.00 | 0.00 | 1.94 |
26 | 27 | 2.700773 | GCCGCCGCCTCATTTTTCT | 61.701 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
32 | 33 | 2.747446 | GCCGCCTCATTTTTCTGAGTAA | 59.253 | 45.455 | 0.89 | 0.00 | 40.91 | 2.24 |
106 | 107 | 9.017509 | AGAATTTCAATCAATGTAAAGCAGAGA | 57.982 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
107 | 108 | 9.630098 | GAATTTCAATCAATGTAAAGCAGAGAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
124 | 144 | 9.944376 | AAGCAGAGAATAGTAACAATTTGACTA | 57.056 | 29.630 | 2.79 | 2.14 | 0.00 | 2.59 |
139 | 159 | 9.823647 | ACAATTTGACTATACACCATTCTAGAG | 57.176 | 33.333 | 2.79 | 0.00 | 0.00 | 2.43 |
205 | 226 | 8.641499 | TTACAACCTTTGATTTTGAATCACAC | 57.359 | 30.769 | 3.01 | 0.00 | 0.00 | 3.82 |
207 | 228 | 6.757947 | ACAACCTTTGATTTTGAATCACACAG | 59.242 | 34.615 | 3.01 | 1.29 | 0.00 | 3.66 |
208 | 229 | 6.713762 | ACCTTTGATTTTGAATCACACAGA | 57.286 | 33.333 | 3.01 | 0.00 | 0.00 | 3.41 |
209 | 230 | 6.742109 | ACCTTTGATTTTGAATCACACAGAG | 58.258 | 36.000 | 3.01 | 0.00 | 0.00 | 3.35 |
221 | 242 | 3.994317 | TCACACAGAGGGGAGAATATCA | 58.006 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
222 | 243 | 4.560739 | TCACACAGAGGGGAGAATATCAT | 58.439 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
228 | 249 | 3.582208 | AGAGGGGAGAATATCATGTGCTC | 59.418 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
240 | 261 | 2.181975 | CATGTGCTCCCATCCCTTTTT | 58.818 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
241 | 262 | 1.923356 | TGTGCTCCCATCCCTTTTTC | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
256 | 277 | 4.821805 | CCCTTTTTCGTGCTACCATGATAT | 59.178 | 41.667 | 0.00 | 0.00 | 36.89 | 1.63 |
258 | 279 | 5.527214 | CCTTTTTCGTGCTACCATGATATCA | 59.473 | 40.000 | 8.10 | 8.10 | 36.89 | 2.15 |
265 | 286 | 6.424812 | TCGTGCTACCATGATATCATTTCAAG | 59.575 | 38.462 | 15.74 | 11.42 | 33.61 | 3.02 |
266 | 287 | 6.424812 | CGTGCTACCATGATATCATTTCAAGA | 59.575 | 38.462 | 15.74 | 0.00 | 33.61 | 3.02 |
328 | 350 | 2.803203 | ATGCCCACATCACATGAGC | 58.197 | 52.632 | 0.00 | 0.00 | 0.00 | 4.26 |
337 | 359 | 3.433274 | CACATCACATGAGCGTACAACTT | 59.567 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
408 | 432 | 6.032094 | GGACAAATCAAGCATGAATAGTGTG | 58.968 | 40.000 | 0.00 | 0.00 | 39.49 | 3.82 |
409 | 433 | 6.349611 | GGACAAATCAAGCATGAATAGTGTGT | 60.350 | 38.462 | 0.00 | 0.00 | 39.49 | 3.72 |
412 | 436 | 5.808042 | ATCAAGCATGAATAGTGTGTCAC | 57.192 | 39.130 | 0.00 | 0.00 | 39.49 | 3.67 |
413 | 437 | 3.679502 | TCAAGCATGAATAGTGTGTCACG | 59.320 | 43.478 | 0.00 | 0.00 | 34.22 | 4.35 |
415 | 439 | 3.515630 | AGCATGAATAGTGTGTCACGAG | 58.484 | 45.455 | 0.00 | 0.00 | 39.64 | 4.18 |
416 | 440 | 3.193479 | AGCATGAATAGTGTGTCACGAGA | 59.807 | 43.478 | 0.00 | 0.00 | 39.64 | 4.04 |
417 | 441 | 3.926527 | GCATGAATAGTGTGTCACGAGAA | 59.073 | 43.478 | 0.00 | 0.00 | 39.64 | 2.87 |
458 | 482 | 7.530010 | CCACTATTCACATTCGATTTTGTCTT | 58.470 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
459 | 483 | 7.693951 | CCACTATTCACATTCGATTTTGTCTTC | 59.306 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
507 | 539 | 7.466746 | TTTTGGACCTGAAATTTCTATGAGG | 57.533 | 36.000 | 18.64 | 17.62 | 0.00 | 3.86 |
519 | 551 | 5.339008 | TTTCTATGAGGTGTAGCGACATT | 57.661 | 39.130 | 2.07 | 0.00 | 38.04 | 2.71 |
521 | 553 | 4.207955 | TCTATGAGGTGTAGCGACATTCT | 58.792 | 43.478 | 2.07 | 4.27 | 38.04 | 2.40 |
523 | 555 | 3.232213 | TGAGGTGTAGCGACATTCTTC | 57.768 | 47.619 | 2.07 | 0.00 | 38.04 | 2.87 |
530 | 562 | 1.060713 | AGCGACATTCTTCGTGAACG | 58.939 | 50.000 | 0.00 | 0.00 | 41.26 | 3.95 |
611 | 649 | 2.007608 | GGAGCATTTCGGAGTTGGTAC | 58.992 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
624 | 662 | 2.124507 | TTGGTACCACCTGCTGGAGC | 62.125 | 60.000 | 16.04 | 3.98 | 43.95 | 4.70 |
692 | 730 | 0.598158 | TCGGAAACCACGAAGGAACG | 60.598 | 55.000 | 5.70 | 0.00 | 41.22 | 3.95 |
756 | 794 | 1.212616 | CTCCTCTCATAAAAGCGGCG | 58.787 | 55.000 | 0.51 | 0.51 | 0.00 | 6.46 |
760 | 798 | 1.062525 | CTCATAAAAGCGGCGCCAC | 59.937 | 57.895 | 30.40 | 18.62 | 0.00 | 5.01 |
762 | 800 | 2.360600 | ATAAAAGCGGCGCCACCA | 60.361 | 55.556 | 30.40 | 12.53 | 39.03 | 4.17 |
763 | 801 | 1.752694 | ATAAAAGCGGCGCCACCAT | 60.753 | 52.632 | 30.40 | 14.42 | 39.03 | 3.55 |
764 | 802 | 1.724582 | ATAAAAGCGGCGCCACCATC | 61.725 | 55.000 | 30.40 | 9.37 | 39.03 | 3.51 |
774 | 812 | 1.451028 | GCCACCATCCACTCTCTGC | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
799 | 837 | 3.695606 | GCCAGAGTCCACGCTCCA | 61.696 | 66.667 | 0.00 | 0.00 | 36.20 | 3.86 |
836 | 874 | 1.222113 | CTTTCTCCGCCCTTCTCCC | 59.778 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
849 | 892 | 3.238497 | CTCCCCCGTGACACCACA | 61.238 | 66.667 | 0.00 | 0.00 | 43.34 | 4.17 |
853 | 896 | 2.280797 | CCCGTGACACCACACCAG | 60.281 | 66.667 | 0.00 | 0.00 | 43.34 | 4.00 |
859 | 902 | 1.000283 | GTGACACCACACCAGAGAGAG | 60.000 | 57.143 | 0.00 | 0.00 | 42.72 | 3.20 |
869 | 912 | 3.198635 | ACACCAGAGAGAGAGAGAGAGAG | 59.801 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
885 | 928 | 3.157217 | GAGAGATGGCGATGCGGGT | 62.157 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
1207 | 1251 | 0.395724 | CTGCCCCAGTAATTCACCCC | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1213 | 1257 | 1.926489 | AGTAATTCACCCCGCCCCA | 60.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
1227 | 1273 | 2.333462 | CCCCACCTCCCCTCTCCTA | 61.333 | 68.421 | 0.00 | 0.00 | 0.00 | 2.94 |
1230 | 1276 | 0.340208 | CCACCTCCCCTCTCCTACTT | 59.660 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1233 | 1279 | 2.502130 | CACCTCCCCTCTCCTACTTTTC | 59.498 | 54.545 | 0.00 | 0.00 | 0.00 | 2.29 |
1235 | 1283 | 3.181394 | ACCTCCCCTCTCCTACTTTTCTT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1236 | 1284 | 3.847184 | CCTCCCCTCTCCTACTTTTCTTT | 59.153 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1237 | 1285 | 4.323868 | CCTCCCCTCTCCTACTTTTCTTTG | 60.324 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1238 | 1286 | 3.587506 | TCCCCTCTCCTACTTTTCTTTGG | 59.412 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
1239 | 1287 | 3.587506 | CCCCTCTCCTACTTTTCTTTGGA | 59.412 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
1240 | 1288 | 4.042934 | CCCCTCTCCTACTTTTCTTTGGAA | 59.957 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
1266 | 1314 | 2.590007 | GCGCGGAATGCTCTCCAT | 60.590 | 61.111 | 8.83 | 0.00 | 43.27 | 3.41 |
1267 | 1315 | 2.890109 | GCGCGGAATGCTCTCCATG | 61.890 | 63.158 | 8.83 | 0.00 | 43.27 | 3.66 |
1270 | 1318 | 1.098050 | GCGGAATGCTCTCCATGTTT | 58.902 | 50.000 | 5.63 | 0.00 | 41.73 | 2.83 |
1271 | 1319 | 1.474077 | GCGGAATGCTCTCCATGTTTT | 59.526 | 47.619 | 5.63 | 0.00 | 41.73 | 2.43 |
1272 | 1320 | 2.682856 | GCGGAATGCTCTCCATGTTTTA | 59.317 | 45.455 | 5.63 | 0.00 | 41.73 | 1.52 |
1273 | 1321 | 3.316308 | GCGGAATGCTCTCCATGTTTTAT | 59.684 | 43.478 | 5.63 | 0.00 | 41.73 | 1.40 |
1274 | 1322 | 4.202050 | GCGGAATGCTCTCCATGTTTTATT | 60.202 | 41.667 | 5.63 | 0.00 | 41.73 | 1.40 |
1277 | 1325 | 7.479980 | CGGAATGCTCTCCATGTTTTATTTTA | 58.520 | 34.615 | 5.63 | 0.00 | 34.91 | 1.52 |
1278 | 1326 | 7.645340 | CGGAATGCTCTCCATGTTTTATTTTAG | 59.355 | 37.037 | 5.63 | 0.00 | 34.91 | 1.85 |
1325 | 1375 | 5.502079 | TCCGGTTTAGGATTTGATTTGCTA | 58.498 | 37.500 | 0.00 | 0.00 | 34.92 | 3.49 |
1329 | 1379 | 6.458342 | CGGTTTAGGATTTGATTTGCTAGGAC | 60.458 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
1331 | 1381 | 4.870021 | AGGATTTGATTTGCTAGGACCT | 57.130 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
1351 | 1401 | 6.183360 | GGACCTGTTAATTGTAGATGCTGAAC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
1404 | 1457 | 4.840401 | TTACTGCTGAATTTCGTGATCG | 57.160 | 40.909 | 0.00 | 0.00 | 38.55 | 3.69 |
1412 | 1465 | 5.718649 | TGAATTTCGTGATCGATCTTTCC | 57.281 | 39.130 | 25.02 | 10.18 | 45.65 | 3.13 |
1456 | 1509 | 3.603965 | AGATGTAGGCTAGTAGGCAGT | 57.396 | 47.619 | 24.23 | 8.45 | 44.19 | 4.40 |
1457 | 1510 | 4.726035 | AGATGTAGGCTAGTAGGCAGTA | 57.274 | 45.455 | 24.23 | 10.69 | 44.19 | 2.74 |
1458 | 1511 | 5.263872 | AGATGTAGGCTAGTAGGCAGTAT | 57.736 | 43.478 | 24.23 | 14.54 | 44.19 | 2.12 |
1459 | 1512 | 5.646215 | AGATGTAGGCTAGTAGGCAGTATT | 58.354 | 41.667 | 24.23 | 7.04 | 44.19 | 1.89 |
1549 | 1604 | 8.998814 | TCTGTTATCCAGGTAATAGGAAATTGA | 58.001 | 33.333 | 0.00 | 0.00 | 41.83 | 2.57 |
1563 | 1618 | 9.525826 | AATAGGAAATTGATTGATCCTGATACC | 57.474 | 33.333 | 4.64 | 0.00 | 42.20 | 2.73 |
1564 | 1619 | 7.159201 | AGGAAATTGATTGATCCTGATACCT | 57.841 | 36.000 | 0.00 | 0.00 | 40.73 | 3.08 |
1565 | 1620 | 7.002879 | AGGAAATTGATTGATCCTGATACCTG | 58.997 | 38.462 | 0.00 | 0.00 | 40.73 | 4.00 |
1569 | 1624 | 3.969312 | TGATTGATCCTGATACCTGCTCA | 59.031 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
1576 | 1631 | 4.579869 | TCCTGATACCTGCTCAAAGAAAC | 58.420 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
1595 | 1650 | 2.243810 | ACCCCGGTACTTACGTTTACA | 58.756 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
1614 | 1669 | 2.674357 | ACACGTTTGTTACTTCGTTGCT | 59.326 | 40.909 | 0.00 | 0.00 | 34.30 | 3.91 |
1653 | 1709 | 3.820777 | GTCTTCAGCAATTCTGTGACC | 57.179 | 47.619 | 14.49 | 0.00 | 43.32 | 4.02 |
1684 | 1741 | 7.420800 | CATCAAATGGCTGTATAGAAGGAAAC | 58.579 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
1687 | 1744 | 7.615365 | TCAAATGGCTGTATAGAAGGAAACAAT | 59.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
1815 | 1876 | 6.703607 | CCAGATGTGGTGCTAATCTTAGTTAG | 59.296 | 42.308 | 0.00 | 0.00 | 39.30 | 2.34 |
1816 | 1877 | 7.268586 | CAGATGTGGTGCTAATCTTAGTTAGT | 58.731 | 38.462 | 0.00 | 0.00 | 34.80 | 2.24 |
1817 | 1878 | 8.414003 | CAGATGTGGTGCTAATCTTAGTTAGTA | 58.586 | 37.037 | 0.00 | 0.00 | 34.80 | 1.82 |
1828 | 1889 | 9.745880 | CTAATCTTAGTTAGTAAATCCAGCGAA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
1845 | 1906 | 5.116180 | CAGCGAATTTAGGGTGTCAGATTA | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
1847 | 1908 | 5.760253 | AGCGAATTTAGGGTGTCAGATTATG | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1848 | 1909 | 5.560953 | GCGAATTTAGGGTGTCAGATTATGC | 60.561 | 44.000 | 0.00 | 0.00 | 0.00 | 3.14 |
1849 | 1910 | 5.049405 | CGAATTTAGGGTGTCAGATTATGCC | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1850 | 1911 | 3.469008 | TTAGGGTGTCAGATTATGCCG | 57.531 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
1851 | 1912 | 0.469917 | AGGGTGTCAGATTATGCCGG | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1853 | 1914 | 1.408266 | GGGTGTCAGATTATGCCGGTT | 60.408 | 52.381 | 1.90 | 0.00 | 0.00 | 4.44 |
1854 | 1915 | 2.365582 | GGTGTCAGATTATGCCGGTTT | 58.634 | 47.619 | 1.90 | 0.00 | 0.00 | 3.27 |
1855 | 1916 | 3.537580 | GGTGTCAGATTATGCCGGTTTA | 58.462 | 45.455 | 1.90 | 0.00 | 0.00 | 2.01 |
1856 | 1917 | 3.942748 | GGTGTCAGATTATGCCGGTTTAA | 59.057 | 43.478 | 1.90 | 1.63 | 0.00 | 1.52 |
1857 | 1918 | 4.578928 | GGTGTCAGATTATGCCGGTTTAAT | 59.421 | 41.667 | 1.90 | 7.03 | 0.00 | 1.40 |
1858 | 1919 | 5.761234 | GGTGTCAGATTATGCCGGTTTAATA | 59.239 | 40.000 | 1.90 | 0.00 | 0.00 | 0.98 |
1859 | 1920 | 6.430000 | GGTGTCAGATTATGCCGGTTTAATAT | 59.570 | 38.462 | 1.90 | 1.53 | 0.00 | 1.28 |
1860 | 1921 | 7.604927 | GGTGTCAGATTATGCCGGTTTAATATA | 59.395 | 37.037 | 1.90 | 0.00 | 0.00 | 0.86 |
1861 | 1922 | 8.995220 | GTGTCAGATTATGCCGGTTTAATATAA | 58.005 | 33.333 | 1.90 | 0.02 | 0.00 | 0.98 |
1862 | 1923 | 8.995220 | TGTCAGATTATGCCGGTTTAATATAAC | 58.005 | 33.333 | 1.90 | 1.70 | 0.00 | 1.89 |
1863 | 1924 | 8.995220 | GTCAGATTATGCCGGTTTAATATAACA | 58.005 | 33.333 | 1.90 | 0.00 | 0.00 | 2.41 |
1864 | 1925 | 9.733556 | TCAGATTATGCCGGTTTAATATAACAT | 57.266 | 29.630 | 1.90 | 0.00 | 0.00 | 2.71 |
1870 | 1931 | 8.685838 | ATGCCGGTTTAATATAACATAGTTGT | 57.314 | 30.769 | 1.90 | 0.00 | 37.82 | 3.32 |
1873 | 1934 | 8.400186 | GCCGGTTTAATATAACATAGTTGTTGT | 58.600 | 33.333 | 1.90 | 0.00 | 45.56 | 3.32 |
1881 | 1942 | 8.934023 | ATATAACATAGTTGTTGTTATGGGGG | 57.066 | 34.615 | 15.68 | 0.00 | 45.31 | 5.40 |
1883 | 1944 | 4.340617 | ACATAGTTGTTGTTATGGGGGTG | 58.659 | 43.478 | 0.00 | 0.00 | 32.76 | 4.61 |
1936 | 1997 | 6.864165 | TGTTTTATCCATTTTACTTTGCGGTC | 59.136 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
1944 | 2005 | 5.482686 | TTTTACTTTGCGGTCGTTAAACT | 57.517 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
2030 | 2091 | 2.331194 | GCAGTAGCTGGCATTTTGTTG | 58.669 | 47.619 | 0.00 | 0.00 | 37.91 | 3.33 |
2031 | 2092 | 2.030007 | GCAGTAGCTGGCATTTTGTTGA | 60.030 | 45.455 | 0.00 | 0.00 | 37.91 | 3.18 |
2034 | 2095 | 3.503748 | AGTAGCTGGCATTTTGTTGAGAC | 59.496 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2035 | 2096 | 1.267806 | AGCTGGCATTTTGTTGAGACG | 59.732 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2044 | 2105 | 6.370593 | GCATTTTGTTGAGACGATTTCAGTA | 58.629 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2045 | 2106 | 6.303259 | GCATTTTGTTGAGACGATTTCAGTAC | 59.697 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
2088 | 2149 | 6.040247 | TGCTGATCTCATTGCATTTTCAATC | 58.960 | 36.000 | 0.00 | 0.00 | 34.68 | 2.67 |
2099 | 2160 | 1.337118 | TTTTCAATCCACAGGCACCC | 58.663 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2126 | 2187 | 3.519913 | GACCAAGTCTCCTCCAGGTAATT | 59.480 | 47.826 | 0.00 | 0.00 | 36.34 | 1.40 |
2127 | 2188 | 4.695606 | ACCAAGTCTCCTCCAGGTAATTA | 58.304 | 43.478 | 0.00 | 0.00 | 36.34 | 1.40 |
2128 | 2189 | 5.098663 | ACCAAGTCTCCTCCAGGTAATTAA | 58.901 | 41.667 | 0.00 | 0.00 | 36.34 | 1.40 |
2129 | 2190 | 5.731678 | ACCAAGTCTCCTCCAGGTAATTAAT | 59.268 | 40.000 | 0.00 | 0.00 | 36.34 | 1.40 |
2133 | 2194 | 9.930693 | CAAGTCTCCTCCAGGTAATTAATATAC | 57.069 | 37.037 | 0.00 | 0.00 | 36.34 | 1.47 |
2140 | 2201 | 7.310485 | CCTCCAGGTAATTAATATACGCCTCTT | 60.310 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
2143 | 2204 | 9.530633 | CCAGGTAATTAATATACGCCTCTTATC | 57.469 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
2286 | 2351 | 2.489285 | GCGGCGGCAAATTGATGA | 59.511 | 55.556 | 9.78 | 0.00 | 39.62 | 2.92 |
2290 | 2355 | 1.322538 | GGCGGCAAATTGATGAGGGT | 61.323 | 55.000 | 3.07 | 0.00 | 0.00 | 4.34 |
2294 | 2359 | 2.170166 | GGCAAATTGATGAGGGTCACA | 58.830 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
2354 | 2743 | 3.491964 | GGTCGGTTATCGGATGATTGTGA | 60.492 | 47.826 | 0.00 | 0.00 | 39.77 | 3.58 |
2363 | 2752 | 1.202110 | GGATGATTGTGACTGCTTGCG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2375 | 2764 | 6.861572 | TGTGACTGCTTGCGATTATACTATAC | 59.138 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
2441 | 2840 | 3.255888 | GTCATATGAGCATAGGACGTGGA | 59.744 | 47.826 | 16.40 | 0.00 | 42.62 | 4.02 |
2488 | 2887 | 6.947644 | TTTACTTTTGGGAAACTAGACACC | 57.052 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
2504 | 2903 | 3.822607 | ACCGCATGTGAGAAGAGTC | 57.177 | 52.632 | 8.11 | 0.00 | 0.00 | 3.36 |
2523 | 2922 | 9.862371 | GAAGAGTCAAGACATATTCAGACTTTA | 57.138 | 33.333 | 2.72 | 0.00 | 40.20 | 1.85 |
2527 | 2926 | 7.978975 | AGTCAAGACATATTCAGACTTTAGAGC | 59.021 | 37.037 | 2.72 | 0.00 | 38.18 | 4.09 |
2532 | 2931 | 7.930865 | AGACATATTCAGACTTTAGAGCCAATC | 59.069 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2535 | 2934 | 4.207891 | TCAGACTTTAGAGCCAATCCAC | 57.792 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2601 | 3000 | 1.271856 | TTCCGTCAGGCATGTAAGGA | 58.728 | 50.000 | 0.00 | 3.19 | 37.47 | 3.36 |
2608 | 3007 | 4.321304 | CGTCAGGCATGTAAGGATAGTAGG | 60.321 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2638 | 3037 | 2.885135 | AGGATTGATGTGGACAAGCA | 57.115 | 45.000 | 0.00 | 0.00 | 35.71 | 3.91 |
2639 | 3038 | 2.440409 | AGGATTGATGTGGACAAGCAC | 58.560 | 47.619 | 0.00 | 0.00 | 35.71 | 4.40 |
2640 | 3039 | 1.474077 | GGATTGATGTGGACAAGCACC | 59.526 | 52.381 | 0.00 | 0.00 | 35.71 | 5.01 |
2641 | 3040 | 2.161855 | GATTGATGTGGACAAGCACCA | 58.838 | 47.619 | 0.00 | 0.00 | 34.43 | 4.17 |
2669 | 3068 | 0.666913 | AGCGCATCCATTTGCAGATC | 59.333 | 50.000 | 11.47 | 0.00 | 42.91 | 2.75 |
2674 | 3073 | 1.335810 | CATCCATTTGCAGATCGGGTG | 59.664 | 52.381 | 5.12 | 5.12 | 0.00 | 4.61 |
2682 | 3081 | 3.558931 | TGCAGATCGGGTGATTGTATT | 57.441 | 42.857 | 0.00 | 0.00 | 34.09 | 1.89 |
2683 | 3082 | 3.884895 | TGCAGATCGGGTGATTGTATTT | 58.115 | 40.909 | 0.00 | 0.00 | 34.09 | 1.40 |
2714 | 3113 | 6.590068 | TCCATTTGGAAACATGTTCATTTGT | 58.410 | 32.000 | 12.39 | 0.00 | 42.18 | 2.83 |
2716 | 3115 | 8.373981 | TCCATTTGGAAACATGTTCATTTGTAT | 58.626 | 29.630 | 12.39 | 0.00 | 42.18 | 2.29 |
2717 | 3116 | 8.658609 | CCATTTGGAAACATGTTCATTTGTATC | 58.341 | 33.333 | 12.39 | 2.80 | 42.32 | 2.24 |
2718 | 3117 | 9.205719 | CATTTGGAAACATGTTCATTTGTATCA | 57.794 | 29.630 | 12.39 | 0.00 | 42.32 | 2.15 |
2734 | 3133 | 7.536895 | TTTGTATCACAATAAATGCATTGCC | 57.463 | 32.000 | 13.82 | 0.00 | 38.00 | 4.52 |
2819 | 3218 | 1.602668 | CCTCACCAAACAACCGCAATG | 60.603 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
2845 | 3244 | 4.391830 | TGCAACTTTAGCATCGTTTAGGAG | 59.608 | 41.667 | 0.00 | 0.00 | 37.02 | 3.69 |
2858 | 3257 | 3.502211 | CGTTTAGGAGTTGGATGCAACTT | 59.498 | 43.478 | 30.05 | 19.28 | 44.53 | 2.66 |
2859 | 3258 | 4.693566 | CGTTTAGGAGTTGGATGCAACTTA | 59.306 | 41.667 | 30.05 | 18.32 | 44.53 | 2.24 |
2860 | 3259 | 5.163854 | CGTTTAGGAGTTGGATGCAACTTAG | 60.164 | 44.000 | 30.05 | 14.28 | 44.53 | 2.18 |
2893 | 3292 | 2.143925 | GCCTTGTTCCACTCACTGTAC | 58.856 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
2901 | 3300 | 4.067972 | TCCACTCACTGTACCTGAAAAC | 57.932 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
2902 | 3301 | 3.139077 | CCACTCACTGTACCTGAAAACC | 58.861 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2912 | 3311 | 4.942483 | TGTACCTGAAAACCGAAACTGAAA | 59.058 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2950 | 3354 | 6.093404 | GCCAGCATGATCATATTTTCTCATG | 58.907 | 40.000 | 8.15 | 6.95 | 44.93 | 3.07 |
3005 | 3495 | 6.845302 | TGATTATTAGCTCAAAACACAGCTG | 58.155 | 36.000 | 13.48 | 13.48 | 45.81 | 4.24 |
3199 | 3785 | 9.809096 | CTAGACATGTTCTTCTTTCAGCTTATA | 57.191 | 33.333 | 0.00 | 0.00 | 35.55 | 0.98 |
3201 | 3787 | 9.323985 | AGACATGTTCTTCTTTCAGCTTATATC | 57.676 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
3202 | 3788 | 8.443953 | ACATGTTCTTCTTTCAGCTTATATCC | 57.556 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
3211 | 3799 | 4.226427 | TCAGCTTATATCCATCCCATGC | 57.774 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
3288 | 3877 | 2.360801 | GCTGTGTATTGGTTGGTGTTGT | 59.639 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3290 | 3879 | 2.614520 | TGTGTATTGGTTGGTGTTGTCG | 59.385 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
3304 | 3893 | 3.734735 | GTGTTGTCGGTTCAGTAGACTTC | 59.265 | 47.826 | 0.00 | 0.00 | 36.01 | 3.01 |
3330 | 3919 | 5.105106 | TGTGAATAAGGATTTCGGCACTCTA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3368 | 3957 | 1.065926 | CAGAGCAGAGTGGGCATTGTA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
3497 | 4086 | 4.207165 | ACCAAAACAAGTCACAGCAGTAT | 58.793 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
3537 | 4126 | 1.973281 | ACAAGCGCCAACATCCAGG | 60.973 | 57.895 | 2.29 | 0.00 | 0.00 | 4.45 |
3553 | 4142 | 7.443302 | ACATCCAGGAATCAAGAGAGAAATA | 57.557 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3554 | 4143 | 7.507829 | ACATCCAGGAATCAAGAGAGAAATAG | 58.492 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
3555 | 4144 | 7.346698 | ACATCCAGGAATCAAGAGAGAAATAGA | 59.653 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
3556 | 4145 | 7.739995 | TCCAGGAATCAAGAGAGAAATAGAA | 57.260 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3557 | 4146 | 7.560368 | TCCAGGAATCAAGAGAGAAATAGAAC | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3564 | 4153 | 7.316393 | TCAAGAGAGAAATAGAACCAGGAAA | 57.684 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
3595 | 4184 | 3.637769 | GCCCCAGACCCATTTTACATAA | 58.362 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
3600 | 4189 | 5.482175 | CCCAGACCCATTTTACATAAAACCA | 59.518 | 40.000 | 0.00 | 0.00 | 37.92 | 3.67 |
3601 | 4190 | 6.350949 | CCCAGACCCATTTTACATAAAACCAG | 60.351 | 42.308 | 0.00 | 0.00 | 37.92 | 4.00 |
3602 | 4191 | 6.350949 | CCAGACCCATTTTACATAAAACCAGG | 60.351 | 42.308 | 0.00 | 3.91 | 37.92 | 4.45 |
3605 | 4194 | 7.511028 | AGACCCATTTTACATAAAACCAGGAAA | 59.489 | 33.333 | 12.46 | 0.00 | 37.92 | 3.13 |
3607 | 4196 | 8.154203 | ACCCATTTTACATAAAACCAGGAAAAG | 58.846 | 33.333 | 12.46 | 2.70 | 37.92 | 2.27 |
3608 | 4197 | 7.606073 | CCCATTTTACATAAAACCAGGAAAAGG | 59.394 | 37.037 | 0.00 | 0.00 | 37.92 | 3.11 |
3609 | 4198 | 7.606073 | CCATTTTACATAAAACCAGGAAAAGGG | 59.394 | 37.037 | 0.00 | 0.00 | 37.92 | 3.95 |
3611 | 4200 | 3.582164 | ACATAAAACCAGGAAAAGGGCA | 58.418 | 40.909 | 0.00 | 0.00 | 0.00 | 5.36 |
3612 | 4201 | 3.970640 | ACATAAAACCAGGAAAAGGGCAA | 59.029 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
3613 | 4202 | 4.202315 | ACATAAAACCAGGAAAAGGGCAAC | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3648 | 4259 | 6.493802 | TCCATAGTGGGAGTAACATAGATGAC | 59.506 | 42.308 | 0.00 | 0.00 | 38.32 | 3.06 |
3692 | 4304 | 5.130975 | TGGCAGCTAATTAATGAGGAGAGAA | 59.869 | 40.000 | 1.84 | 0.00 | 0.00 | 2.87 |
3738 | 4350 | 7.595819 | TTGTTCTGGTTTATTGGTCTTCATT | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3795 | 4610 | 7.994425 | TCACACATACCAATACAAAATGAGT | 57.006 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3874 | 4891 | 5.900437 | TGAGTAGTCTAAAGAGGGGAGAAA | 58.100 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3877 | 4894 | 4.421574 | AGTCTAAAGAGGGGAGAAAGGA | 57.578 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
3910 | 4927 | 2.231235 | GGCTGACAAAAGGGTTACATGG | 59.769 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3916 | 4933 | 5.359576 | TGACAAAAGGGTTACATGGATATGC | 59.640 | 40.000 | 0.00 | 0.00 | 37.85 | 3.14 |
3919 | 4936 | 1.165270 | GGGTTACATGGATATGCGGC | 58.835 | 55.000 | 0.00 | 0.00 | 37.85 | 6.53 |
3934 | 4951 | 1.153188 | CGGCCACCATAGCATCACA | 60.153 | 57.895 | 2.24 | 0.00 | 0.00 | 3.58 |
3976 | 4993 | 3.056250 | GCACTCCATCAGAGAAGAACTCA | 60.056 | 47.826 | 0.00 | 0.00 | 46.50 | 3.41 |
4010 | 5027 | 0.324738 | TCCTTCGTCAGCCTGGATCT | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
4028 | 5045 | 0.543277 | CTGGCCAGAGCAACATAGGA | 59.457 | 55.000 | 29.88 | 0.00 | 42.56 | 2.94 |
4030 | 5047 | 0.179034 | GGCCAGAGCAACATAGGAGG | 60.179 | 60.000 | 0.00 | 0.00 | 42.56 | 4.30 |
4031 | 5048 | 0.817229 | GCCAGAGCAACATAGGAGGC | 60.817 | 60.000 | 0.00 | 0.00 | 39.53 | 4.70 |
4033 | 5050 | 0.531532 | CAGAGCAACATAGGAGGCCG | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4038 | 5055 | 1.138266 | GCAACATAGGAGGCCGTCTTA | 59.862 | 52.381 | 6.22 | 1.91 | 0.00 | 2.10 |
4149 | 5166 | 1.442526 | CTCAGCACATCCCGCAATCC | 61.443 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
32 | 33 | 8.822805 | TCTCTGGGTCTATTACATTTTGTAACT | 58.177 | 33.333 | 2.42 | 0.00 | 44.54 | 2.24 |
109 | 110 | 9.959721 | AGAATGGTGTATAGTCAAATTGTTACT | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
139 | 159 | 3.971871 | CGACGAATGCTCTCTGTATTCTC | 59.028 | 47.826 | 0.00 | 0.00 | 42.90 | 2.87 |
193 | 214 | 3.394274 | TCTCCCCTCTGTGTGATTCAAAA | 59.606 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
205 | 226 | 3.327172 | AGCACATGATATTCTCCCCTCTG | 59.673 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
207 | 228 | 3.307339 | GGAGCACATGATATTCTCCCCTC | 60.307 | 52.174 | 0.00 | 0.00 | 37.85 | 4.30 |
208 | 229 | 2.641815 | GGAGCACATGATATTCTCCCCT | 59.358 | 50.000 | 0.00 | 0.00 | 37.85 | 4.79 |
209 | 230 | 3.064900 | GGAGCACATGATATTCTCCCC | 57.935 | 52.381 | 0.00 | 0.00 | 37.85 | 4.81 |
221 | 242 | 2.460669 | GAAAAAGGGATGGGAGCACAT | 58.539 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
222 | 243 | 1.886222 | CGAAAAAGGGATGGGAGCACA | 60.886 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
228 | 249 | 1.743394 | GTAGCACGAAAAAGGGATGGG | 59.257 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
240 | 261 | 5.852827 | TGAAATGATATCATGGTAGCACGA | 58.147 | 37.500 | 18.85 | 0.00 | 36.56 | 4.35 |
241 | 262 | 6.424812 | TCTTGAAATGATATCATGGTAGCACG | 59.575 | 38.462 | 18.85 | 10.14 | 36.56 | 5.34 |
288 | 309 | 9.333724 | GGCATCCATGATTTTTCAGAATTATTT | 57.666 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
291 | 312 | 6.383436 | TGGGCATCCATGATTTTTCAGAATTA | 59.617 | 34.615 | 0.00 | 0.00 | 38.32 | 1.40 |
313 | 335 | 1.290203 | GTACGCTCATGTGATGTGGG | 58.710 | 55.000 | 0.00 | 0.00 | 40.93 | 4.61 |
382 | 406 | 6.094603 | ACACTATTCATGCTTGATTTGTCCTC | 59.905 | 38.462 | 2.75 | 0.00 | 0.00 | 3.71 |
384 | 408 | 6.032094 | CACACTATTCATGCTTGATTTGTCC | 58.968 | 40.000 | 2.75 | 0.00 | 0.00 | 4.02 |
393 | 417 | 3.925379 | TCGTGACACACTATTCATGCTT | 58.075 | 40.909 | 6.37 | 0.00 | 31.34 | 3.91 |
397 | 421 | 4.621460 | CGTTTCTCGTGACACACTATTCAT | 59.379 | 41.667 | 6.37 | 0.00 | 31.34 | 2.57 |
408 | 432 | 4.509915 | TTTGACTTTCGTTTCTCGTGAC | 57.490 | 40.909 | 0.00 | 0.00 | 40.80 | 3.67 |
409 | 433 | 4.491280 | CGTTTTGACTTTCGTTTCTCGTGA | 60.491 | 41.667 | 0.00 | 0.00 | 40.80 | 4.35 |
412 | 436 | 2.707469 | GCGTTTTGACTTTCGTTTCTCG | 59.293 | 45.455 | 0.00 | 0.00 | 41.41 | 4.04 |
413 | 437 | 3.033873 | GGCGTTTTGACTTTCGTTTCTC | 58.966 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
415 | 439 | 2.528688 | GTGGCGTTTTGACTTTCGTTTC | 59.471 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
416 | 440 | 2.162809 | AGTGGCGTTTTGACTTTCGTTT | 59.837 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
417 | 441 | 1.741145 | AGTGGCGTTTTGACTTTCGTT | 59.259 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
432 | 456 | 5.640732 | ACAAAATCGAATGTGAATAGTGGC | 58.359 | 37.500 | 0.00 | 0.00 | 0.00 | 5.01 |
434 | 458 | 8.446273 | AGAAGACAAAATCGAATGTGAATAGTG | 58.554 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
481 | 513 | 8.534496 | CCTCATAGAAATTTCAGGTCCAAAATT | 58.466 | 33.333 | 19.99 | 8.46 | 36.81 | 1.82 |
503 | 535 | 2.415491 | CGAAGAATGTCGCTACACCTCA | 60.415 | 50.000 | 0.00 | 0.00 | 38.78 | 3.86 |
507 | 539 | 2.592194 | TCACGAAGAATGTCGCTACAC | 58.408 | 47.619 | 0.00 | 0.00 | 45.00 | 2.90 |
563 | 595 | 9.813446 | ACGGTACCATTAAAACAACAATTTTAA | 57.187 | 25.926 | 13.54 | 6.04 | 44.17 | 1.52 |
574 | 606 | 3.502979 | TGCTCCAACGGTACCATTAAAAC | 59.497 | 43.478 | 13.54 | 0.00 | 0.00 | 2.43 |
624 | 662 | 1.376424 | ATCGACACTTGGCAGCCTG | 60.376 | 57.895 | 14.15 | 5.18 | 0.00 | 4.85 |
756 | 794 | 1.451028 | GCAGAGAGTGGATGGTGGC | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
760 | 798 | 0.179116 | CGTCTGCAGAGAGTGGATGG | 60.179 | 60.000 | 18.89 | 0.00 | 0.00 | 3.51 |
762 | 800 | 0.613292 | ACCGTCTGCAGAGAGTGGAT | 60.613 | 55.000 | 18.89 | 5.29 | 31.78 | 3.41 |
763 | 801 | 1.228583 | ACCGTCTGCAGAGAGTGGA | 60.229 | 57.895 | 18.89 | 0.00 | 31.78 | 4.02 |
764 | 802 | 1.080230 | CACCGTCTGCAGAGAGTGG | 60.080 | 63.158 | 27.37 | 22.85 | 33.04 | 4.00 |
766 | 804 | 2.653702 | GCACCGTCTGCAGAGAGT | 59.346 | 61.111 | 18.89 | 14.75 | 46.29 | 3.24 |
774 | 812 | 2.262915 | GGACTCTGGCACCGTCTG | 59.737 | 66.667 | 10.22 | 0.00 | 0.00 | 3.51 |
836 | 874 | 2.280797 | CTGGTGTGGTGTCACGGG | 60.281 | 66.667 | 0.00 | 0.00 | 46.42 | 5.28 |
849 | 892 | 3.708631 | CTCTCTCTCTCTCTCTCTCTGGT | 59.291 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
853 | 896 | 4.802248 | GCCATCTCTCTCTCTCTCTCTCTC | 60.802 | 54.167 | 0.00 | 0.00 | 0.00 | 3.20 |
859 | 902 | 2.254546 | TCGCCATCTCTCTCTCTCTC | 57.745 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
869 | 912 | 2.969238 | CACCCGCATCGCCATCTC | 60.969 | 66.667 | 0.00 | 0.00 | 0.00 | 2.75 |
1171 | 1215 | 4.057428 | GCTGCTGACGTCCTCGGT | 62.057 | 66.667 | 14.12 | 0.00 | 41.85 | 4.69 |
1213 | 1257 | 2.387510 | AGAAAAGTAGGAGAGGGGAGGT | 59.612 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1227 | 1273 | 5.460748 | CGCGGTAAAAATTCCAAAGAAAAGT | 59.539 | 36.000 | 0.00 | 0.00 | 35.09 | 2.66 |
1230 | 1276 | 3.736759 | GCGCGGTAAAAATTCCAAAGAAA | 59.263 | 39.130 | 8.83 | 0.00 | 35.09 | 2.52 |
1233 | 1279 | 1.646726 | CGCGCGGTAAAAATTCCAAAG | 59.353 | 47.619 | 24.84 | 0.00 | 0.00 | 2.77 |
1235 | 1283 | 0.109689 | CCGCGCGGTAAAAATTCCAA | 60.110 | 50.000 | 39.71 | 0.00 | 0.00 | 3.53 |
1236 | 1284 | 0.954449 | TCCGCGCGGTAAAAATTCCA | 60.954 | 50.000 | 44.16 | 21.74 | 36.47 | 3.53 |
1237 | 1285 | 0.168568 | TTCCGCGCGGTAAAAATTCC | 59.831 | 50.000 | 44.16 | 0.00 | 36.47 | 3.01 |
1238 | 1286 | 1.843753 | CATTCCGCGCGGTAAAAATTC | 59.156 | 47.619 | 44.16 | 0.00 | 36.47 | 2.17 |
1239 | 1287 | 1.902840 | CATTCCGCGCGGTAAAAATT | 58.097 | 45.000 | 44.16 | 20.37 | 36.47 | 1.82 |
1240 | 1288 | 0.524604 | GCATTCCGCGCGGTAAAAAT | 60.525 | 50.000 | 44.16 | 33.06 | 36.47 | 1.82 |
1259 | 1307 | 9.013490 | CGCATTTCTAAAATAAAACATGGAGAG | 57.987 | 33.333 | 0.00 | 0.00 | 0.00 | 3.20 |
1261 | 1309 | 8.909708 | TCGCATTTCTAAAATAAAACATGGAG | 57.090 | 30.769 | 0.00 | 0.00 | 0.00 | 3.86 |
1262 | 1310 | 9.868277 | AATCGCATTTCTAAAATAAAACATGGA | 57.132 | 25.926 | 0.00 | 0.00 | 0.00 | 3.41 |
1266 | 1314 | 9.482627 | ACCAAATCGCATTTCTAAAATAAAACA | 57.517 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
1271 | 1319 | 9.575783 | GGTAAACCAAATCGCATTTCTAAAATA | 57.424 | 29.630 | 0.00 | 0.00 | 35.64 | 1.40 |
1272 | 1320 | 7.547722 | GGGTAAACCAAATCGCATTTCTAAAAT | 59.452 | 33.333 | 0.81 | 0.00 | 39.85 | 1.82 |
1273 | 1321 | 6.869388 | GGGTAAACCAAATCGCATTTCTAAAA | 59.131 | 34.615 | 0.81 | 0.00 | 39.85 | 1.52 |
1274 | 1322 | 6.391537 | GGGTAAACCAAATCGCATTTCTAAA | 58.608 | 36.000 | 0.81 | 0.00 | 39.85 | 1.85 |
1277 | 1325 | 3.119637 | CGGGTAAACCAAATCGCATTTCT | 60.120 | 43.478 | 0.81 | 0.00 | 40.22 | 2.52 |
1278 | 1326 | 3.119779 | TCGGGTAAACCAAATCGCATTTC | 60.120 | 43.478 | 0.81 | 0.00 | 40.22 | 2.17 |
1280 | 1328 | 2.438411 | TCGGGTAAACCAAATCGCATT | 58.562 | 42.857 | 0.81 | 0.00 | 40.22 | 3.56 |
1314 | 1364 | 7.232534 | ACAATTAACAGGTCCTAGCAAATCAAA | 59.767 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1317 | 1367 | 6.759497 | ACAATTAACAGGTCCTAGCAAATC | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1325 | 1375 | 5.189736 | TCAGCATCTACAATTAACAGGTCCT | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1329 | 1379 | 6.992063 | AGTTCAGCATCTACAATTAACAGG | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
1331 | 1381 | 7.064609 | GCACTAGTTCAGCATCTACAATTAACA | 59.935 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
1351 | 1401 | 4.176271 | TCGTCAGATCAAACATGCACTAG | 58.824 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1412 | 1465 | 9.155975 | TCTTAGCTAATCTTTCTTAGTTGCTTG | 57.844 | 33.333 | 6.64 | 0.00 | 32.39 | 4.01 |
1456 | 1509 | 7.482474 | CACATTTTGATCTGCCATGTGTAATA | 58.518 | 34.615 | 14.63 | 0.00 | 39.84 | 0.98 |
1457 | 1510 | 6.334989 | CACATTTTGATCTGCCATGTGTAAT | 58.665 | 36.000 | 14.63 | 0.00 | 39.84 | 1.89 |
1458 | 1511 | 5.712004 | CACATTTTGATCTGCCATGTGTAA | 58.288 | 37.500 | 14.63 | 0.00 | 39.84 | 2.41 |
1459 | 1512 | 4.380761 | GCACATTTTGATCTGCCATGTGTA | 60.381 | 41.667 | 19.81 | 0.00 | 44.38 | 2.90 |
1534 | 1589 | 8.924511 | TCAGGATCAATCAATTTCCTATTACC | 57.075 | 34.615 | 0.00 | 0.00 | 36.45 | 2.85 |
1540 | 1595 | 7.002879 | CAGGTATCAGGATCAATCAATTTCCT | 58.997 | 38.462 | 0.00 | 0.00 | 39.18 | 3.36 |
1547 | 1602 | 3.969312 | TGAGCAGGTATCAGGATCAATCA | 59.031 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1549 | 1604 | 5.131642 | TCTTTGAGCAGGTATCAGGATCAAT | 59.868 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1561 | 1616 | 0.537371 | CGGGGTTTCTTTGAGCAGGT | 60.537 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1562 | 1617 | 1.244019 | CCGGGGTTTCTTTGAGCAGG | 61.244 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1563 | 1618 | 0.537371 | ACCGGGGTTTCTTTGAGCAG | 60.537 | 55.000 | 6.32 | 0.00 | 0.00 | 4.24 |
1564 | 1619 | 0.766131 | TACCGGGGTTTCTTTGAGCA | 59.234 | 50.000 | 6.32 | 0.00 | 0.00 | 4.26 |
1565 | 1620 | 1.162698 | GTACCGGGGTTTCTTTGAGC | 58.837 | 55.000 | 6.32 | 0.00 | 0.00 | 4.26 |
1569 | 1624 | 3.044235 | CGTAAGTACCGGGGTTTCTTT | 57.956 | 47.619 | 6.32 | 0.00 | 0.00 | 2.52 |
1595 | 1650 | 2.031191 | CCAGCAACGAAGTAACAAACGT | 59.969 | 45.455 | 0.00 | 0.00 | 45.00 | 3.99 |
1614 | 1669 | 1.695242 | ACCAACTTCCATACGACACCA | 59.305 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1684 | 1741 | 9.582431 | AAGATTTCACATCTAGATTTTGCATTG | 57.418 | 29.630 | 1.33 | 0.00 | 0.00 | 2.82 |
1687 | 1744 | 7.394077 | TCCAAGATTTCACATCTAGATTTTGCA | 59.606 | 33.333 | 1.33 | 0.00 | 0.00 | 4.08 |
1815 | 1876 | 4.638865 | ACACCCTAAATTCGCTGGATTTAC | 59.361 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
1816 | 1877 | 4.850680 | ACACCCTAAATTCGCTGGATTTA | 58.149 | 39.130 | 3.20 | 3.20 | 0.00 | 1.40 |
1817 | 1878 | 3.694566 | GACACCCTAAATTCGCTGGATTT | 59.305 | 43.478 | 1.43 | 1.43 | 0.00 | 2.17 |
1828 | 1889 | 4.389374 | CGGCATAATCTGACACCCTAAAT | 58.611 | 43.478 | 0.00 | 0.00 | 29.06 | 1.40 |
1845 | 1906 | 8.685838 | ACAACTATGTTATATTAAACCGGCAT | 57.314 | 30.769 | 0.00 | 0.00 | 35.91 | 4.40 |
1861 | 1922 | 4.202631 | ACACCCCCATAACAACAACTATGT | 60.203 | 41.667 | 0.00 | 0.00 | 43.14 | 2.29 |
1862 | 1923 | 4.340617 | ACACCCCCATAACAACAACTATG | 58.659 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 |
1863 | 1924 | 4.668138 | ACACCCCCATAACAACAACTAT | 57.332 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
1864 | 1925 | 4.456662 | AACACCCCCATAACAACAACTA | 57.543 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
1865 | 1926 | 3.322191 | AACACCCCCATAACAACAACT | 57.678 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1866 | 1927 | 4.146564 | ACTAACACCCCCATAACAACAAC | 58.853 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1867 | 1928 | 4.105057 | AGACTAACACCCCCATAACAACAA | 59.895 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
1868 | 1929 | 3.653836 | AGACTAACACCCCCATAACAACA | 59.346 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
1869 | 1930 | 4.296621 | AGACTAACACCCCCATAACAAC | 57.703 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
1870 | 1931 | 5.572066 | GCTTAGACTAACACCCCCATAACAA | 60.572 | 44.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1873 | 1934 | 3.457012 | GGCTTAGACTAACACCCCCATAA | 59.543 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
1881 | 1942 | 4.246458 | CAAGACTGGGCTTAGACTAACAC | 58.754 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
1883 | 1944 | 3.514309 | TCCAAGACTGGGCTTAGACTAAC | 59.486 | 47.826 | 0.00 | 0.00 | 43.71 | 2.34 |
1908 | 1969 | 8.716909 | CCGCAAAGTAAAATGGATAAAACAATT | 58.283 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1944 | 2005 | 9.010029 | GGTCAAACTAGATAATTTTCAGAACCA | 57.990 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
1972 | 2033 | 9.823647 | AATAGATTATGACAGTTGGACAAGTAG | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2034 | 2095 | 9.077674 | GGCAGTAAGATATATGTACTGAAATCG | 57.922 | 37.037 | 24.62 | 8.38 | 44.94 | 3.34 |
2035 | 2096 | 9.077674 | CGGCAGTAAGATATATGTACTGAAATC | 57.922 | 37.037 | 24.62 | 13.60 | 44.94 | 2.17 |
2044 | 2105 | 5.924475 | GCAAACGGCAGTAAGATATATGT | 57.076 | 39.130 | 0.00 | 0.00 | 43.97 | 2.29 |
2099 | 2160 | 1.324005 | GGAGGAGACTTGGTCGGAGG | 61.324 | 65.000 | 0.00 | 0.00 | 44.43 | 4.30 |
2129 | 2190 | 9.186837 | CCTTATAGAAAGGATAAGAGGCGTATA | 57.813 | 37.037 | 0.00 | 0.00 | 38.60 | 1.47 |
2133 | 2194 | 6.209788 | ACTCCTTATAGAAAGGATAAGAGGCG | 59.790 | 42.308 | 6.93 | 0.00 | 44.75 | 5.52 |
2151 | 2212 | 5.832539 | AGCCCGTATACTACTACTCCTTA | 57.167 | 43.478 | 0.56 | 0.00 | 0.00 | 2.69 |
2153 | 2214 | 5.832539 | TTAGCCCGTATACTACTACTCCT | 57.167 | 43.478 | 0.56 | 0.00 | 0.00 | 3.69 |
2154 | 2215 | 6.000840 | AGTTTAGCCCGTATACTACTACTCC | 58.999 | 44.000 | 0.56 | 0.00 | 0.00 | 3.85 |
2156 | 2217 | 6.652900 | GCTAGTTTAGCCCGTATACTACTACT | 59.347 | 42.308 | 0.56 | 0.63 | 45.95 | 2.57 |
2157 | 2218 | 6.836953 | GCTAGTTTAGCCCGTATACTACTAC | 58.163 | 44.000 | 0.56 | 0.00 | 45.95 | 2.73 |
2354 | 2743 | 5.399858 | CCGTATAGTATAATCGCAAGCAGT | 58.600 | 41.667 | 0.00 | 0.00 | 37.18 | 4.40 |
2441 | 2840 | 3.862877 | TTCATAGGCCATAGCACATGT | 57.137 | 42.857 | 5.01 | 0.00 | 42.56 | 3.21 |
2488 | 2887 | 2.665537 | GTCTTGACTCTTCTCACATGCG | 59.334 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
2504 | 2903 | 7.044181 | TGGCTCTAAAGTCTGAATATGTCTTG | 58.956 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2527 | 2926 | 0.673985 | TATCTCTCGCCGTGGATTGG | 59.326 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2532 | 2931 | 0.172578 | TTGTGTATCTCTCGCCGTGG | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2535 | 2934 | 2.282555 | CACATTTGTGTATCTCTCGCCG | 59.717 | 50.000 | 2.48 | 0.00 | 40.96 | 6.46 |
2601 | 3000 | 2.057922 | CCTTGGGACCATGCCTACTAT | 58.942 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
2608 | 3007 | 1.684983 | CATCAATCCTTGGGACCATGC | 59.315 | 52.381 | 0.00 | 0.00 | 32.98 | 4.06 |
2636 | 3035 | 3.244105 | CGCTACACACTGTGGTGC | 58.756 | 61.111 | 13.77 | 14.36 | 46.57 | 5.01 |
2638 | 3037 | 0.670546 | GATGCGCTACACACTGTGGT | 60.671 | 55.000 | 9.73 | 9.59 | 37.94 | 4.16 |
2639 | 3038 | 1.361668 | GGATGCGCTACACACTGTGG | 61.362 | 60.000 | 9.73 | 3.85 | 37.94 | 4.17 |
2640 | 3039 | 0.670239 | TGGATGCGCTACACACTGTG | 60.670 | 55.000 | 9.73 | 7.68 | 39.75 | 3.66 |
2641 | 3040 | 0.250234 | ATGGATGCGCTACACACTGT | 59.750 | 50.000 | 9.73 | 0.00 | 0.00 | 3.55 |
2642 | 3041 | 1.372582 | AATGGATGCGCTACACACTG | 58.627 | 50.000 | 9.73 | 0.00 | 0.00 | 3.66 |
2643 | 3042 | 1.739466 | CAAATGGATGCGCTACACACT | 59.261 | 47.619 | 9.73 | 0.00 | 0.00 | 3.55 |
2644 | 3043 | 1.795162 | GCAAATGGATGCGCTACACAC | 60.795 | 52.381 | 9.73 | 0.00 | 36.45 | 3.82 |
2645 | 3044 | 0.451383 | GCAAATGGATGCGCTACACA | 59.549 | 50.000 | 9.73 | 2.73 | 36.45 | 3.72 |
2669 | 3068 | 5.294799 | TGGACGAATAAAATACAATCACCCG | 59.705 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2674 | 3073 | 9.796120 | TTCCAAATGGACGAATAAAATACAATC | 57.204 | 29.630 | 0.54 | 0.00 | 45.39 | 2.67 |
2682 | 3081 | 6.987386 | ACATGTTTCCAAATGGACGAATAAA | 58.013 | 32.000 | 0.54 | 0.00 | 45.39 | 1.40 |
2683 | 3082 | 6.582677 | ACATGTTTCCAAATGGACGAATAA | 57.417 | 33.333 | 0.54 | 0.00 | 45.39 | 1.40 |
2711 | 3110 | 6.876155 | AGGCAATGCATTTATTGTGATACAA | 58.124 | 32.000 | 9.83 | 0.00 | 42.95 | 2.41 |
2712 | 3111 | 6.468333 | AGGCAATGCATTTATTGTGATACA | 57.532 | 33.333 | 9.83 | 0.00 | 39.62 | 2.29 |
2713 | 3112 | 7.920151 | TGTAAGGCAATGCATTTATTGTGATAC | 59.080 | 33.333 | 11.19 | 0.00 | 39.62 | 2.24 |
2714 | 3113 | 8.005192 | TGTAAGGCAATGCATTTATTGTGATA | 57.995 | 30.769 | 11.19 | 0.00 | 39.62 | 2.15 |
2716 | 3115 | 6.278172 | TGTAAGGCAATGCATTTATTGTGA | 57.722 | 33.333 | 11.19 | 0.00 | 39.62 | 3.58 |
2717 | 3116 | 6.964741 | TTGTAAGGCAATGCATTTATTGTG | 57.035 | 33.333 | 11.19 | 0.00 | 39.62 | 3.33 |
2718 | 3117 | 7.160726 | ACTTTGTAAGGCAATGCATTTATTGT | 58.839 | 30.769 | 11.19 | 1.68 | 39.62 | 2.71 |
2819 | 3218 | 2.969443 | ACGATGCTAAAGTTGCACAC | 57.031 | 45.000 | 0.00 | 0.00 | 43.59 | 3.82 |
2827 | 3226 | 5.175859 | TCCAACTCCTAAACGATGCTAAAG | 58.824 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2858 | 3257 | 6.828273 | TGGAACAAGGCGTACTACTAATACTA | 59.172 | 38.462 | 0.00 | 0.00 | 31.92 | 1.82 |
2859 | 3258 | 5.653769 | TGGAACAAGGCGTACTACTAATACT | 59.346 | 40.000 | 0.00 | 0.00 | 31.92 | 2.12 |
2860 | 3259 | 5.745769 | GTGGAACAAGGCGTACTACTAATAC | 59.254 | 44.000 | 0.00 | 0.00 | 44.16 | 1.89 |
2893 | 3292 | 4.632538 | AGTTTCAGTTTCGGTTTTCAGG | 57.367 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
2901 | 3300 | 7.017645 | CACTTGATATGAAGTTTCAGTTTCGG | 58.982 | 38.462 | 4.67 | 0.00 | 41.08 | 4.30 |
2902 | 3301 | 6.521133 | GCACTTGATATGAAGTTTCAGTTTCG | 59.479 | 38.462 | 4.67 | 0.00 | 41.08 | 3.46 |
2912 | 3311 | 3.354948 | TGCTGGCACTTGATATGAAGT | 57.645 | 42.857 | 1.25 | 1.25 | 36.58 | 3.01 |
3005 | 3495 | 4.137543 | AGATGTTTGTGAGGTCAGGTTTC | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
3120 | 3703 | 0.693049 | GACCACAGGACCAGGAACAT | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3158 | 3741 | 1.301244 | CTAGCATGCCGAATCGCCT | 60.301 | 57.895 | 15.66 | 0.00 | 0.00 | 5.52 |
3192 | 3778 | 5.283763 | TCTAGCATGGGATGGATATAAGCT | 58.716 | 41.667 | 0.00 | 0.00 | 0.00 | 3.74 |
3225 | 3813 | 1.543208 | CCAAGAACTACCACAGCTGCA | 60.543 | 52.381 | 15.27 | 0.00 | 0.00 | 4.41 |
3226 | 3814 | 1.160137 | CCAAGAACTACCACAGCTGC | 58.840 | 55.000 | 15.27 | 0.00 | 0.00 | 5.25 |
3227 | 3815 | 2.146342 | CACCAAGAACTACCACAGCTG | 58.854 | 52.381 | 13.48 | 13.48 | 0.00 | 4.24 |
3228 | 3816 | 1.072331 | CCACCAAGAACTACCACAGCT | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
3229 | 3817 | 1.202770 | ACCACCAAGAACTACCACAGC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3230 | 3818 | 2.158813 | ACACCACCAAGAACTACCACAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3231 | 3819 | 1.841277 | ACACCACCAAGAACTACCACA | 59.159 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
3288 | 3877 | 2.557056 | CACAGGAAGTCTACTGAACCGA | 59.443 | 50.000 | 10.52 | 0.00 | 38.09 | 4.69 |
3290 | 3879 | 4.602340 | TTCACAGGAAGTCTACTGAACC | 57.398 | 45.455 | 10.52 | 0.00 | 38.09 | 3.62 |
3304 | 3893 | 3.065371 | GTGCCGAAATCCTTATTCACAGG | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
3330 | 3919 | 3.176411 | TCTGGTCATCACAGGTCTGAAT | 58.824 | 45.455 | 4.84 | 0.00 | 36.62 | 2.57 |
3368 | 3957 | 3.119101 | AGTGAAGCCGAAATACGTCTCAT | 60.119 | 43.478 | 0.00 | 0.00 | 40.78 | 2.90 |
3451 | 4040 | 6.098266 | GTCTCATTTATAAAATGGGGCCAAGT | 59.902 | 38.462 | 4.39 | 0.00 | 26.71 | 3.16 |
3488 | 4077 | 4.261072 | CCGAGTACGATAACATACTGCTGT | 60.261 | 45.833 | 0.66 | 0.66 | 42.66 | 4.40 |
3497 | 4086 | 1.958579 | CCCATCCCGAGTACGATAACA | 59.041 | 52.381 | 0.00 | 0.00 | 42.66 | 2.41 |
3537 | 4126 | 7.560368 | TCCTGGTTCTATTTCTCTCTTGATTC | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3553 | 4142 | 1.704641 | GTTGCCCTTTTCCTGGTTCT | 58.295 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3554 | 4143 | 0.679505 | GGTTGCCCTTTTCCTGGTTC | 59.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3555 | 4144 | 1.112916 | CGGTTGCCCTTTTCCTGGTT | 61.113 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3556 | 4145 | 1.530655 | CGGTTGCCCTTTTCCTGGT | 60.531 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
3557 | 4146 | 2.931068 | GCGGTTGCCCTTTTCCTGG | 61.931 | 63.158 | 0.00 | 0.00 | 33.98 | 4.45 |
3595 | 4184 | 1.128200 | GGTTGCCCTTTTCCTGGTTT | 58.872 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3609 | 4198 | 1.098712 | TATGGATTTCGGGCGGTTGC | 61.099 | 55.000 | 0.00 | 0.00 | 41.71 | 4.17 |
3611 | 4200 | 0.544697 | ACTATGGATTTCGGGCGGTT | 59.455 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3612 | 4201 | 0.179056 | CACTATGGATTTCGGGCGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3613 | 4202 | 0.884704 | CCACTATGGATTTCGGGCGG | 60.885 | 60.000 | 0.00 | 0.00 | 40.96 | 6.13 |
3614 | 4203 | 0.884704 | CCCACTATGGATTTCGGGCG | 60.885 | 60.000 | 0.00 | 0.00 | 40.96 | 6.13 |
3616 | 4205 | 1.768870 | ACTCCCACTATGGATTTCGGG | 59.231 | 52.381 | 0.00 | 0.00 | 40.96 | 5.14 |
3617 | 4206 | 4.141801 | TGTTACTCCCACTATGGATTTCGG | 60.142 | 45.833 | 0.00 | 0.00 | 40.96 | 4.30 |
3618 | 4207 | 5.018539 | TGTTACTCCCACTATGGATTTCG | 57.981 | 43.478 | 0.00 | 0.00 | 40.96 | 3.46 |
3619 | 4208 | 7.963532 | TCTATGTTACTCCCACTATGGATTTC | 58.036 | 38.462 | 0.00 | 0.00 | 40.96 | 2.17 |
3622 | 4211 | 7.179338 | GTCATCTATGTTACTCCCACTATGGAT | 59.821 | 40.741 | 0.00 | 0.00 | 40.96 | 3.41 |
3623 | 4212 | 6.493802 | GTCATCTATGTTACTCCCACTATGGA | 59.506 | 42.308 | 0.00 | 0.00 | 40.96 | 3.41 |
3672 | 4284 | 9.692325 | ATTTGTTTCTCTCCTCATTAATTAGCT | 57.308 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
3709 | 4321 | 9.974980 | GAAGACCAATAAACCAGAACAAAAATA | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3710 | 4322 | 8.482128 | TGAAGACCAATAAACCAGAACAAAAAT | 58.518 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3711 | 4323 | 7.841956 | TGAAGACCAATAAACCAGAACAAAAA | 58.158 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
3712 | 4324 | 7.411486 | TGAAGACCAATAAACCAGAACAAAA | 57.589 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3713 | 4325 | 7.595819 | ATGAAGACCAATAAACCAGAACAAA | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3714 | 4326 | 7.595819 | AATGAAGACCAATAAACCAGAACAA | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3715 | 4327 | 8.877864 | ATAATGAAGACCAATAAACCAGAACA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3845 | 4661 | 6.159928 | TCCCCTCTTTAGACTACTCATAGTGA | 59.840 | 42.308 | 0.00 | 0.00 | 41.98 | 3.41 |
3897 | 4914 | 3.486383 | CCGCATATCCATGTAACCCTTT | 58.514 | 45.455 | 0.00 | 0.00 | 34.40 | 3.11 |
3910 | 4927 | 0.321564 | TGCTATGGTGGCCGCATATC | 60.322 | 55.000 | 19.98 | 10.01 | 0.00 | 1.63 |
3916 | 4933 | 1.153188 | TGTGATGCTATGGTGGCCG | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
3919 | 4936 | 0.466189 | GGGGTGTGATGCTATGGTGG | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3976 | 4993 | 1.353091 | AAGGAGTCGGCTTCCTTCTT | 58.647 | 50.000 | 13.04 | 1.16 | 39.45 | 2.52 |
4010 | 5027 | 0.543277 | CTCCTATGTTGCTCTGGCCA | 59.457 | 55.000 | 4.71 | 4.71 | 37.74 | 5.36 |
4028 | 5045 | 1.049402 | GGGAGCTTATAAGACGGCCT | 58.951 | 55.000 | 16.85 | 3.05 | 0.00 | 5.19 |
4030 | 5047 | 2.210961 | GTTGGGAGCTTATAAGACGGC | 58.789 | 52.381 | 16.85 | 1.39 | 0.00 | 5.68 |
4031 | 5048 | 2.484947 | GGGTTGGGAGCTTATAAGACGG | 60.485 | 54.545 | 16.85 | 0.00 | 0.00 | 4.79 |
4033 | 5050 | 3.433740 | CCAGGGTTGGGAGCTTATAAGAC | 60.434 | 52.174 | 16.85 | 8.80 | 41.05 | 3.01 |
4113 | 5130 | 2.980233 | GAAGCGTTGCAGGCTGGT | 60.980 | 61.111 | 17.64 | 0.93 | 38.53 | 4.00 |
4119 | 5136 | 1.206072 | GTGCTGAGAAGCGTTGCAG | 59.794 | 57.895 | 0.00 | 0.00 | 37.69 | 4.41 |
4124 | 5141 | 1.078848 | GGGATGTGCTGAGAAGCGT | 60.079 | 57.895 | 0.00 | 0.00 | 37.69 | 5.07 |
4126 | 5143 | 2.467826 | GCGGGATGTGCTGAGAAGC | 61.468 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.