Multiple sequence alignment - TraesCS7B01G346300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G346300 chr7B 100.000 2777 0 0 1 2777 602113220 602110444 0.000000e+00 5129
1 TraesCS7B01G346300 chr7B 90.413 751 55 9 997 1746 602100645 602099911 0.000000e+00 972
2 TraesCS7B01G346300 chr7B 90.014 721 54 4 224 944 331175871 331176573 0.000000e+00 917
3 TraesCS7B01G346300 chr7B 86.278 583 64 7 1781 2360 602099733 602099164 1.090000e-173 619
4 TraesCS7B01G346300 chr7D 92.432 806 43 4 944 1746 554575638 554576428 0.000000e+00 1134
5 TraesCS7B01G346300 chr7D 88.060 670 54 13 1781 2446 554576609 554577256 0.000000e+00 771
6 TraesCS7B01G346300 chr7D 98.450 129 2 0 1 129 554574181 554574309 7.740000e-56 228
7 TraesCS7B01G346300 chr7D 94.118 102 5 1 122 223 554575546 554575646 1.330000e-33 154
8 TraesCS7B01G346300 chr7A 91.009 823 65 2 957 1779 641408690 641407877 0.000000e+00 1101
9 TraesCS7B01G346300 chr7A 88.377 456 38 7 1991 2446 641402645 641402205 4.070000e-148 534
10 TraesCS7B01G346300 chr7A 86.935 199 21 3 1781 1977 641407755 641407560 4.660000e-53 219
11 TraesCS7B01G346300 chr6B 92.818 724 43 5 221 944 52389293 52390007 0.000000e+00 1040
12 TraesCS7B01G346300 chr5B 92.254 723 47 5 223 945 551670429 551671142 0.000000e+00 1016
13 TraesCS7B01G346300 chr2B 91.316 737 57 6 219 952 638512508 638513240 0.000000e+00 1000
14 TraesCS7B01G346300 chr2D 90.398 729 53 7 224 944 429361988 429361269 0.000000e+00 942
15 TraesCS7B01G346300 chr3D 90.287 731 52 8 224 944 524757044 524757765 0.000000e+00 939
16 TraesCS7B01G346300 chr3B 92.756 566 32 3 385 944 534158984 534158422 0.000000e+00 809
17 TraesCS7B01G346300 chr4A 92.349 562 34 5 224 776 718501479 718500918 0.000000e+00 791
18 TraesCS7B01G346300 chr6D 90.330 424 30 3 530 944 303653929 303653508 1.880000e-151 545
19 TraesCS7B01G346300 chr6D 89.925 268 26 1 224 490 303654192 303653925 7.360000e-91 344
20 TraesCS7B01G346300 chr2A 89.513 267 28 0 224 490 66051227 66050961 3.430000e-89 339
21 TraesCS7B01G346300 chr2A 82.940 381 28 14 599 944 66050921 66050543 2.690000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G346300 chr7B 602110444 602113220 2776 True 5129.00 5129 100.0000 1 2777 1 chr7B.!!$R1 2776
1 TraesCS7B01G346300 chr7B 331175871 331176573 702 False 917.00 917 90.0140 224 944 1 chr7B.!!$F1 720
2 TraesCS7B01G346300 chr7B 602099164 602100645 1481 True 795.50 972 88.3455 997 2360 2 chr7B.!!$R2 1363
3 TraesCS7B01G346300 chr7D 554574181 554577256 3075 False 571.75 1134 93.2650 1 2446 4 chr7D.!!$F1 2445
4 TraesCS7B01G346300 chr7A 641407560 641408690 1130 True 660.00 1101 88.9720 957 1977 2 chr7A.!!$R2 1020
5 TraesCS7B01G346300 chr6B 52389293 52390007 714 False 1040.00 1040 92.8180 221 944 1 chr6B.!!$F1 723
6 TraesCS7B01G346300 chr5B 551670429 551671142 713 False 1016.00 1016 92.2540 223 945 1 chr5B.!!$F1 722
7 TraesCS7B01G346300 chr2B 638512508 638513240 732 False 1000.00 1000 91.3160 219 952 1 chr2B.!!$F1 733
8 TraesCS7B01G346300 chr2D 429361269 429361988 719 True 942.00 942 90.3980 224 944 1 chr2D.!!$R1 720
9 TraesCS7B01G346300 chr3D 524757044 524757765 721 False 939.00 939 90.2870 224 944 1 chr3D.!!$F1 720
10 TraesCS7B01G346300 chr3B 534158422 534158984 562 True 809.00 809 92.7560 385 944 1 chr3B.!!$R1 559
11 TraesCS7B01G346300 chr4A 718500918 718501479 561 True 791.00 791 92.3490 224 776 1 chr4A.!!$R1 552
12 TraesCS7B01G346300 chr6D 303653508 303654192 684 True 444.50 545 90.1275 224 944 2 chr6D.!!$R1 720
13 TraesCS7B01G346300 chr2A 66050543 66051227 684 True 324.00 339 86.2265 224 944 2 chr2A.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 1511 0.035056 GACCTGGTCTTGGACATGGG 60.035 60.0 19.53 7.0 33.68 4.0 F
969 2284 0.249073 CCCATCGGTCACATCTCGAC 60.249 60.0 0.00 0.0 35.70 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 2959 0.106619 CCCCTCGGTAGTAGCAGTCT 60.107 60.0 0.0 0.0 0.0 3.24 R
2725 4226 0.034089 GGCAAGCACCCTACCTTCAT 60.034 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.030147 ACACTCTCAACAATATACCTCCCA 58.970 41.667 0.00 0.00 0.00 4.37
47 48 7.638444 TCAACAATATACCTCCCATTGAAGAA 58.362 34.615 0.00 0.00 34.48 2.52
149 1393 6.989169 AGCAAATAGGTCTGAACTGCTAATAG 59.011 38.462 5.25 0.00 36.92 1.73
189 1433 2.481449 CGGATTTCGACTCCCAACTAGG 60.481 54.545 7.47 0.00 42.43 3.02
198 1442 3.456277 GACTCCCAACTAGGTCCATGATT 59.544 47.826 0.00 0.00 34.66 2.57
207 1451 1.633432 AGGTCCATGATTCGAAACCCA 59.367 47.619 0.00 1.02 0.00 4.51
211 1455 1.603802 CCATGATTCGAAACCCATCGG 59.396 52.381 0.00 7.14 42.92 4.18
214 1458 1.276705 TGATTCGAAACCCATCGGTCA 59.723 47.619 0.00 0.00 43.71 4.02
215 1459 1.664151 GATTCGAAACCCATCGGTCAC 59.336 52.381 0.00 0.00 43.71 3.67
216 1460 0.393448 TTCGAAACCCATCGGTCACA 59.607 50.000 0.00 0.00 43.71 3.58
217 1461 0.393448 TCGAAACCCATCGGTCACAA 59.607 50.000 0.00 0.00 43.71 3.33
218 1462 1.202663 TCGAAACCCATCGGTCACAAA 60.203 47.619 0.00 0.00 43.71 2.83
219 1463 1.810151 CGAAACCCATCGGTCACAAAT 59.190 47.619 0.00 0.00 43.71 2.32
262 1507 2.214216 CCGGACCTGGTCTTGGACA 61.214 63.158 25.01 0.00 33.68 4.02
266 1511 0.035056 GACCTGGTCTTGGACATGGG 60.035 60.000 19.53 7.00 33.68 4.00
306 1551 4.241555 GCGAGGCCATGGGTCGAT 62.242 66.667 15.13 0.00 35.70 3.59
316 1563 3.225104 CCATGGGTCGATCCATTTCATT 58.775 45.455 27.91 3.58 44.55 2.57
400 1649 8.302515 AGAAAATCCATGAATTCAGTTAGCAT 57.697 30.769 14.54 0.00 0.00 3.79
416 1665 1.202698 AGCATAATCTGAAGACCGGGC 60.203 52.381 6.32 0.52 0.00 6.13
459 1708 4.855340 TGGACAAGTTGAAAAGGAAGAGT 58.145 39.130 10.54 0.00 0.00 3.24
485 1735 1.358402 CCAGGATGACGAGCTCGAG 59.642 63.158 40.58 15.25 39.57 4.04
535 1792 4.404098 GGGACGAATGCCGGTGGT 62.404 66.667 1.90 0.00 43.93 4.16
650 1909 1.122632 TGTACAGGGGCGTCTCCAAA 61.123 55.000 0.00 0.00 36.21 3.28
707 1973 3.871594 GTCTTCCGGTCAAGTAATCCATG 59.128 47.826 0.00 0.00 0.00 3.66
735 2001 4.104696 TGAGCACATCGTCGATTTCTTA 57.895 40.909 4.63 0.00 0.00 2.10
856 2171 5.542779 GACTCCACTGACCCATATATCAAC 58.457 45.833 0.00 0.00 0.00 3.18
868 2183 2.332063 ATATCAACTGAGGCCAACCG 57.668 50.000 5.01 0.00 42.76 4.44
871 2186 2.030562 AACTGAGGCCAACCGACG 59.969 61.111 5.01 0.00 42.76 5.12
967 2282 1.029681 TACCCATCGGTCACATCTCG 58.970 55.000 0.00 0.00 43.29 4.04
968 2283 0.683179 ACCCATCGGTCACATCTCGA 60.683 55.000 0.00 0.00 38.28 4.04
969 2284 0.249073 CCCATCGGTCACATCTCGAC 60.249 60.000 0.00 0.00 35.70 4.20
995 2310 1.065251 GCTCGACCTAACCTAACCTCG 59.935 57.143 0.00 0.00 0.00 4.63
1095 2410 0.460311 CCGTCTGGGAGATAAAGCGT 59.540 55.000 0.00 0.00 38.47 5.07
1125 2440 2.971452 GTCCACGACCCAGACTCC 59.029 66.667 0.00 0.00 0.00 3.85
1428 2755 2.572284 GGCTACAACGCCGACTCT 59.428 61.111 0.00 0.00 40.79 3.24
1629 2959 3.735143 TCGTTGGACGACGACAGA 58.265 55.556 10.53 0.00 46.73 3.41
1632 2962 0.725118 CGTTGGACGACGACAGAGAC 60.725 60.000 0.00 0.00 46.05 3.36
1633 2963 0.592148 GTTGGACGACGACAGAGACT 59.408 55.000 0.00 0.00 33.39 3.24
1634 2964 0.591659 TTGGACGACGACAGAGACTG 59.408 55.000 0.00 0.00 37.52 3.51
1765 3123 0.098728 GGCGACGGAAACAATCATGG 59.901 55.000 0.00 0.00 0.00 3.66
1799 3288 9.796120 TTGATTTTAAAGATTAACGCCCTATTG 57.204 29.630 0.00 0.00 0.00 1.90
1833 3322 6.490721 AGGATAGATCGACCGAAAGAAATACT 59.509 38.462 0.00 0.00 0.00 2.12
1840 3329 4.265556 CGACCGAAAGAAATACTGCACTAG 59.734 45.833 0.00 0.00 0.00 2.57
1841 3330 3.933332 ACCGAAAGAAATACTGCACTAGC 59.067 43.478 0.00 0.00 42.57 3.42
1842 3331 4.184629 CCGAAAGAAATACTGCACTAGCT 58.815 43.478 0.00 0.00 42.74 3.32
1843 3332 5.105473 ACCGAAAGAAATACTGCACTAGCTA 60.105 40.000 0.00 0.00 42.74 3.32
1844 3333 5.232414 CCGAAAGAAATACTGCACTAGCTAC 59.768 44.000 0.00 0.00 42.74 3.58
1866 3357 7.857885 GCTACTTGATTATCAATGTAAACTGCC 59.142 37.037 8.17 0.00 35.59 4.85
1869 3360 4.036262 TGATTATCAATGTAAACTGCCGGC 59.964 41.667 22.73 22.73 0.00 6.13
1873 3364 2.080693 CAATGTAAACTGCCGGCTACA 58.919 47.619 29.70 26.13 0.00 2.74
1886 3377 3.730963 GCCGGCTACAAGCAGTTTAATTC 60.731 47.826 22.15 0.00 44.75 2.17
1894 3385 5.519722 ACAAGCAGTTTAATTCCTTCAACG 58.480 37.500 0.00 0.00 0.00 4.10
1898 3389 5.409826 AGCAGTTTAATTCCTTCAACGAGAG 59.590 40.000 0.00 0.00 0.00 3.20
1899 3390 5.390991 GCAGTTTAATTCCTTCAACGAGAGG 60.391 44.000 0.00 0.00 0.00 3.69
1901 3392 6.872020 CAGTTTAATTCCTTCAACGAGAGGTA 59.128 38.462 0.00 0.00 0.00 3.08
1929 3420 6.238266 GCAATATTTTCAGGCAAATCCACATG 60.238 38.462 0.00 0.00 37.29 3.21
1934 3425 3.548770 TCAGGCAAATCCACATGATCTC 58.451 45.455 0.00 0.00 37.29 2.75
1989 3480 8.437360 TGAGCAGATAAATACCACTAATGTTG 57.563 34.615 0.00 0.00 0.00 3.33
2022 3513 4.656112 TGGTTGGTAAATTTGGTCATGGTT 59.344 37.500 0.00 0.00 0.00 3.67
2039 3530 1.005394 TTCTCCTCGTTTGGACCGC 60.005 57.895 0.00 0.00 31.94 5.68
2040 3531 1.750341 TTCTCCTCGTTTGGACCGCA 61.750 55.000 0.00 0.00 31.94 5.69
2057 3548 1.204704 CGCAGGGATGTGTAGAAGTCA 59.795 52.381 0.00 0.00 0.00 3.41
2060 3551 3.133721 GCAGGGATGTGTAGAAGTCAGAT 59.866 47.826 0.00 0.00 0.00 2.90
2071 3562 5.462068 TGTAGAAGTCAGATGAAAACACACG 59.538 40.000 0.00 0.00 0.00 4.49
2085 3576 5.427036 AAACACACGAACAAATTATCCGT 57.573 34.783 0.00 0.00 0.00 4.69
2107 3599 1.472376 GGAAGAGCAATCAGAGGGTCG 60.472 57.143 0.00 0.00 36.68 4.79
2115 3607 2.032860 ATCAGAGGGTCGGAATGGCG 62.033 60.000 0.00 0.00 0.00 5.69
2123 3615 2.434884 CGGAATGGCGCACAGACT 60.435 61.111 10.83 0.00 0.00 3.24
2175 3667 0.036164 CCGGATGAAGTGTGGTTGGA 59.964 55.000 0.00 0.00 0.00 3.53
2176 3668 1.544537 CCGGATGAAGTGTGGTTGGAA 60.545 52.381 0.00 0.00 0.00 3.53
2177 3669 1.535462 CGGATGAAGTGTGGTTGGAAC 59.465 52.381 0.00 0.00 0.00 3.62
2178 3670 2.810400 CGGATGAAGTGTGGTTGGAACT 60.810 50.000 0.00 0.00 0.00 3.01
2179 3671 3.222603 GGATGAAGTGTGGTTGGAACTT 58.777 45.455 0.00 0.00 36.87 2.66
2180 3672 3.004734 GGATGAAGTGTGGTTGGAACTTG 59.995 47.826 0.00 0.00 34.37 3.16
2181 3673 2.374184 TGAAGTGTGGTTGGAACTTGG 58.626 47.619 0.00 0.00 34.37 3.61
2222 3714 2.820178 AGTAGGAAATTGGGCAAAGGG 58.180 47.619 0.00 0.00 0.00 3.95
2227 3719 2.840038 GGAAATTGGGCAAAGGGAGAAT 59.160 45.455 0.00 0.00 0.00 2.40
2228 3720 3.369787 GGAAATTGGGCAAAGGGAGAATG 60.370 47.826 0.00 0.00 0.00 2.67
2229 3721 2.925966 ATTGGGCAAAGGGAGAATGA 57.074 45.000 0.00 0.00 0.00 2.57
2230 3722 2.220653 TTGGGCAAAGGGAGAATGAG 57.779 50.000 0.00 0.00 0.00 2.90
2231 3723 0.332632 TGGGCAAAGGGAGAATGAGG 59.667 55.000 0.00 0.00 0.00 3.86
2232 3724 1.039785 GGGCAAAGGGAGAATGAGGC 61.040 60.000 0.00 0.00 0.00 4.70
2233 3725 0.033699 GGCAAAGGGAGAATGAGGCT 60.034 55.000 0.00 0.00 0.00 4.58
2234 3726 1.618074 GGCAAAGGGAGAATGAGGCTT 60.618 52.381 0.00 0.00 0.00 4.35
2235 3727 2.174360 GCAAAGGGAGAATGAGGCTTT 58.826 47.619 0.00 0.00 0.00 3.51
2250 3751 1.344438 GGCTTTTGAGGGTTTTGGGAG 59.656 52.381 0.00 0.00 0.00 4.30
2286 3787 3.543494 CACTTTGCAAAAGACACTTCACG 59.457 43.478 13.84 0.00 0.00 4.35
2295 3796 6.451960 GCAAAAGACACTTCACGTAACAAAAC 60.452 38.462 0.00 0.00 0.00 2.43
2319 3820 6.998074 ACCAATATCCTTTTTGATAGCATCGA 59.002 34.615 0.00 0.00 31.09 3.59
2375 3876 9.700831 ACTAAAGGCTATGAAAATGTCCTTAAT 57.299 29.630 0.00 0.00 33.91 1.40
2405 3906 6.834168 AACACTTGTCCTTGAAGAAAAGAA 57.166 33.333 0.00 0.00 35.08 2.52
2414 3915 6.943146 GTCCTTGAAGAAAAGAAGGGTCTAAT 59.057 38.462 0.00 0.00 37.45 1.73
2442 3943 2.691409 TTTGGGGTCTAAGCTGATCG 57.309 50.000 0.00 0.00 0.00 3.69
2446 3947 1.480954 GGGGTCTAAGCTGATCGACAA 59.519 52.381 0.00 0.00 0.00 3.18
2447 3948 2.093658 GGGGTCTAAGCTGATCGACAAA 60.094 50.000 0.00 0.00 0.00 2.83
2448 3949 3.596214 GGGTCTAAGCTGATCGACAAAA 58.404 45.455 0.00 0.00 0.00 2.44
2449 3950 4.192317 GGGTCTAAGCTGATCGACAAAAT 58.808 43.478 0.00 0.00 0.00 1.82
2450 3951 4.636206 GGGTCTAAGCTGATCGACAAAATT 59.364 41.667 0.00 0.00 0.00 1.82
2451 3952 5.815740 GGGTCTAAGCTGATCGACAAAATTA 59.184 40.000 0.00 0.00 0.00 1.40
2452 3953 6.483640 GGGTCTAAGCTGATCGACAAAATTAT 59.516 38.462 0.00 0.00 0.00 1.28
2453 3954 7.012421 GGGTCTAAGCTGATCGACAAAATTATT 59.988 37.037 0.00 0.00 0.00 1.40
2454 3955 9.042008 GGTCTAAGCTGATCGACAAAATTATTA 57.958 33.333 0.00 0.00 0.00 0.98
2459 3960 8.607441 AGCTGATCGACAAAATTATTATAGCA 57.393 30.769 0.00 0.00 0.00 3.49
2460 3961 9.224267 AGCTGATCGACAAAATTATTATAGCAT 57.776 29.630 0.00 0.00 0.00 3.79
2461 3962 9.831737 GCTGATCGACAAAATTATTATAGCATT 57.168 29.630 0.00 0.00 0.00 3.56
2477 3978 9.801873 ATTATAGCATTTATGTGGTTGTCAAAC 57.198 29.630 0.00 0.00 35.40 2.93
2478 3979 4.545610 AGCATTTATGTGGTTGTCAAACG 58.454 39.130 0.00 0.00 37.15 3.60
2479 3980 4.277174 AGCATTTATGTGGTTGTCAAACGA 59.723 37.500 0.00 0.00 37.15 3.85
2480 3981 4.979197 GCATTTATGTGGTTGTCAAACGAA 59.021 37.500 0.00 0.00 37.15 3.85
2481 3982 5.460419 GCATTTATGTGGTTGTCAAACGAAA 59.540 36.000 0.00 0.00 37.15 3.46
2482 3983 6.019479 GCATTTATGTGGTTGTCAAACGAAAA 60.019 34.615 0.00 0.00 37.15 2.29
2483 3984 7.307101 GCATTTATGTGGTTGTCAAACGAAAAT 60.307 33.333 0.00 0.00 37.15 1.82
2484 3985 7.687005 TTTATGTGGTTGTCAAACGAAAATC 57.313 32.000 0.00 0.00 37.15 2.17
2485 3986 4.703645 TGTGGTTGTCAAACGAAAATCA 57.296 36.364 0.00 0.00 37.15 2.57
2486 3987 5.060662 TGTGGTTGTCAAACGAAAATCAA 57.939 34.783 0.00 0.00 37.15 2.57
2487 3988 5.098893 TGTGGTTGTCAAACGAAAATCAAG 58.901 37.500 0.00 0.00 37.15 3.02
2488 3989 5.106118 TGTGGTTGTCAAACGAAAATCAAGA 60.106 36.000 0.00 0.00 37.15 3.02
2489 3990 5.977129 GTGGTTGTCAAACGAAAATCAAGAT 59.023 36.000 0.00 0.00 37.15 2.40
2490 3991 6.142320 GTGGTTGTCAAACGAAAATCAAGATC 59.858 38.462 0.00 0.00 37.15 2.75
2491 3992 6.039270 TGGTTGTCAAACGAAAATCAAGATCT 59.961 34.615 0.00 0.00 37.15 2.75
2492 3993 6.918022 GGTTGTCAAACGAAAATCAAGATCTT 59.082 34.615 0.88 0.88 37.15 2.40
2493 3994 7.435192 GGTTGTCAAACGAAAATCAAGATCTTT 59.565 33.333 4.86 0.00 37.15 2.52
2494 3995 7.912949 TGTCAAACGAAAATCAAGATCTTTG 57.087 32.000 4.86 1.96 0.00 2.77
2495 3996 7.479980 TGTCAAACGAAAATCAAGATCTTTGT 58.520 30.769 4.86 0.00 0.00 2.83
2496 3997 7.973388 TGTCAAACGAAAATCAAGATCTTTGTT 59.027 29.630 4.86 0.62 0.00 2.83
2497 3998 8.472236 GTCAAACGAAAATCAAGATCTTTGTTC 58.528 33.333 4.86 2.70 0.00 3.18
2498 3999 8.187480 TCAAACGAAAATCAAGATCTTTGTTCA 58.813 29.630 4.86 0.00 0.00 3.18
2499 4000 7.914537 AACGAAAATCAAGATCTTTGTTCAC 57.085 32.000 4.86 1.71 0.00 3.18
2500 4001 7.026631 ACGAAAATCAAGATCTTTGTTCACA 57.973 32.000 4.86 0.00 0.00 3.58
2501 4002 7.479980 ACGAAAATCAAGATCTTTGTTCACAA 58.520 30.769 4.86 0.00 0.00 3.33
2502 4003 7.645340 ACGAAAATCAAGATCTTTGTTCACAAG 59.355 33.333 4.86 0.00 37.15 3.16
2503 4004 7.645340 CGAAAATCAAGATCTTTGTTCACAAGT 59.355 33.333 4.86 0.00 37.15 3.16
2504 4005 9.305925 GAAAATCAAGATCTTTGTTCACAAGTT 57.694 29.630 4.86 0.00 37.15 2.66
2505 4006 8.638685 AAATCAAGATCTTTGTTCACAAGTTG 57.361 30.769 4.86 0.00 37.15 3.16
2506 4007 7.572523 ATCAAGATCTTTGTTCACAAGTTGA 57.427 32.000 10.54 0.00 37.15 3.18
2507 4008 7.389803 TCAAGATCTTTGTTCACAAGTTGAA 57.610 32.000 10.54 0.00 42.26 2.69
2508 4009 7.999679 TCAAGATCTTTGTTCACAAGTTGAAT 58.000 30.769 10.54 0.00 46.14 2.57
2509 4010 9.119418 TCAAGATCTTTGTTCACAAGTTGAATA 57.881 29.630 10.54 0.00 46.14 1.75
2510 4011 9.734620 CAAGATCTTTGTTCACAAGTTGAATAA 57.265 29.630 10.54 0.00 46.14 1.40
2511 4012 9.956720 AAGATCTTTGTTCACAAGTTGAATAAG 57.043 29.630 10.54 3.53 46.14 1.73
2512 4013 9.342308 AGATCTTTGTTCACAAGTTGAATAAGA 57.658 29.630 10.54 8.30 46.14 2.10
2544 4045 7.855784 AATCTTACCATGGTCCTTTTTCTTT 57.144 32.000 23.76 1.45 0.00 2.52
2545 4046 6.894339 TCTTACCATGGTCCTTTTTCTTTC 57.106 37.500 23.76 0.00 0.00 2.62
2546 4047 6.369629 TCTTACCATGGTCCTTTTTCTTTCA 58.630 36.000 23.76 0.00 0.00 2.69
2547 4048 4.937201 ACCATGGTCCTTTTTCTTTCAC 57.063 40.909 13.00 0.00 0.00 3.18
2548 4049 3.641436 ACCATGGTCCTTTTTCTTTCACC 59.359 43.478 13.00 0.00 0.00 4.02
2549 4050 3.640967 CCATGGTCCTTTTTCTTTCACCA 59.359 43.478 2.57 0.00 38.27 4.17
2550 4051 4.262164 CCATGGTCCTTTTTCTTTCACCAG 60.262 45.833 2.57 0.00 37.34 4.00
2551 4052 2.693074 TGGTCCTTTTTCTTTCACCAGC 59.307 45.455 0.00 0.00 30.33 4.85
2552 4053 2.959030 GGTCCTTTTTCTTTCACCAGCT 59.041 45.455 0.00 0.00 0.00 4.24
2553 4054 3.004839 GGTCCTTTTTCTTTCACCAGCTC 59.995 47.826 0.00 0.00 0.00 4.09
2554 4055 3.632145 GTCCTTTTTCTTTCACCAGCTCA 59.368 43.478 0.00 0.00 0.00 4.26
2555 4056 4.279420 GTCCTTTTTCTTTCACCAGCTCAT 59.721 41.667 0.00 0.00 0.00 2.90
2556 4057 4.279169 TCCTTTTTCTTTCACCAGCTCATG 59.721 41.667 0.00 0.00 0.00 3.07
2557 4058 3.648339 TTTTCTTTCACCAGCTCATGC 57.352 42.857 0.00 0.00 40.05 4.06
2571 4072 3.461061 GCTCATGCTATGCAGACTTACA 58.539 45.455 0.00 0.00 43.65 2.41
2572 4073 4.063689 GCTCATGCTATGCAGACTTACAT 58.936 43.478 0.00 0.00 43.65 2.29
2573 4074 4.083961 GCTCATGCTATGCAGACTTACATG 60.084 45.833 0.00 0.63 43.65 3.21
2574 4075 5.280654 TCATGCTATGCAGACTTACATGA 57.719 39.130 0.00 11.33 43.65 3.07
2575 4076 5.861727 TCATGCTATGCAGACTTACATGAT 58.138 37.500 0.00 0.00 43.65 2.45
2576 4077 5.699458 TCATGCTATGCAGACTTACATGATG 59.301 40.000 0.00 0.00 43.65 3.07
2577 4078 3.811497 TGCTATGCAGACTTACATGATGC 59.189 43.478 0.00 0.42 37.40 3.91
2580 4081 3.056588 TGCAGACTTACATGATGCACA 57.943 42.857 0.00 0.00 41.65 4.57
2581 4082 3.613030 TGCAGACTTACATGATGCACAT 58.387 40.909 0.00 0.00 41.65 3.21
2582 4083 4.768583 TGCAGACTTACATGATGCACATA 58.231 39.130 0.00 0.00 41.65 2.29
2583 4084 5.370679 TGCAGACTTACATGATGCACATAT 58.629 37.500 0.00 0.00 41.65 1.78
2584 4085 5.824097 TGCAGACTTACATGATGCACATATT 59.176 36.000 0.00 0.00 41.65 1.28
2585 4086 6.140786 GCAGACTTACATGATGCACATATTG 58.859 40.000 0.00 0.00 37.46 1.90
2595 4096 3.245443 CACATATTGCAGGCGCTTG 57.755 52.632 16.21 16.21 39.64 4.01
2596 4097 0.248743 CACATATTGCAGGCGCTTGG 60.249 55.000 21.88 5.65 39.64 3.61
2597 4098 1.299620 CATATTGCAGGCGCTTGGC 60.300 57.895 21.88 15.75 39.64 4.52
2598 4099 1.753848 ATATTGCAGGCGCTTGGCA 60.754 52.632 21.88 18.16 46.16 4.92
2599 4100 1.111116 ATATTGCAGGCGCTTGGCAT 61.111 50.000 21.88 13.02 46.16 4.40
2600 4101 1.727511 TATTGCAGGCGCTTGGCATC 61.728 55.000 21.88 4.75 46.16 3.91
2602 4103 3.751246 GCAGGCGCTTGGCATCAA 61.751 61.111 21.88 0.00 46.16 2.57
2603 4104 2.180017 CAGGCGCTTGGCATCAAC 59.820 61.111 12.39 0.00 46.16 3.18
2604 4105 2.034687 AGGCGCTTGGCATCAACT 59.965 55.556 7.64 0.00 46.16 3.16
2605 4106 1.604593 AGGCGCTTGGCATCAACTT 60.605 52.632 7.64 0.00 46.16 2.66
2606 4107 1.153958 GGCGCTTGGCATCAACTTC 60.154 57.895 7.64 0.00 46.16 3.01
2607 4108 1.589716 GGCGCTTGGCATCAACTTCT 61.590 55.000 7.64 0.00 46.16 2.85
2608 4109 1.086696 GCGCTTGGCATCAACTTCTA 58.913 50.000 0.00 0.00 42.87 2.10
2609 4110 1.468520 GCGCTTGGCATCAACTTCTAA 59.531 47.619 0.00 0.00 42.87 2.10
2610 4111 2.729156 GCGCTTGGCATCAACTTCTAAC 60.729 50.000 0.00 0.00 42.87 2.34
2611 4112 2.483877 CGCTTGGCATCAACTTCTAACA 59.516 45.455 0.00 0.00 0.00 2.41
2612 4113 3.058293 CGCTTGGCATCAACTTCTAACAA 60.058 43.478 0.00 0.00 0.00 2.83
2613 4114 4.229876 GCTTGGCATCAACTTCTAACAAC 58.770 43.478 0.00 0.00 0.00 3.32
2614 4115 4.022849 GCTTGGCATCAACTTCTAACAACT 60.023 41.667 0.00 0.00 0.00 3.16
2615 4116 5.181245 GCTTGGCATCAACTTCTAACAACTA 59.819 40.000 0.00 0.00 0.00 2.24
2616 4117 6.554334 TTGGCATCAACTTCTAACAACTAC 57.446 37.500 0.00 0.00 0.00 2.73
2617 4118 5.865085 TGGCATCAACTTCTAACAACTACT 58.135 37.500 0.00 0.00 0.00 2.57
2618 4119 6.999950 TGGCATCAACTTCTAACAACTACTA 58.000 36.000 0.00 0.00 0.00 1.82
2619 4120 6.872020 TGGCATCAACTTCTAACAACTACTAC 59.128 38.462 0.00 0.00 0.00 2.73
2620 4121 7.097834 GGCATCAACTTCTAACAACTACTACT 58.902 38.462 0.00 0.00 0.00 2.57
2621 4122 7.603024 GGCATCAACTTCTAACAACTACTACTT 59.397 37.037 0.00 0.00 0.00 2.24
2622 4123 9.635520 GCATCAACTTCTAACAACTACTACTTA 57.364 33.333 0.00 0.00 0.00 2.24
2629 4130 9.713740 CTTCTAACAACTACTACTTACATACGG 57.286 37.037 0.00 0.00 0.00 4.02
2630 4131 9.448438 TTCTAACAACTACTACTTACATACGGA 57.552 33.333 0.00 0.00 0.00 4.69
2631 4132 9.102757 TCTAACAACTACTACTTACATACGGAG 57.897 37.037 0.00 0.00 0.00 4.63
2632 4133 6.129053 ACAACTACTACTTACATACGGAGC 57.871 41.667 0.00 0.00 0.00 4.70
2633 4134 5.884792 ACAACTACTACTTACATACGGAGCT 59.115 40.000 0.00 0.00 0.00 4.09
2634 4135 6.038050 ACAACTACTACTTACATACGGAGCTC 59.962 42.308 4.71 4.71 0.00 4.09
2635 4136 5.678583 ACTACTACTTACATACGGAGCTCA 58.321 41.667 17.19 0.00 0.00 4.26
2636 4137 4.897025 ACTACTTACATACGGAGCTCAC 57.103 45.455 17.19 4.01 0.00 3.51
2637 4138 3.631227 ACTACTTACATACGGAGCTCACC 59.369 47.826 17.19 0.00 0.00 4.02
2638 4139 2.453521 ACTTACATACGGAGCTCACCA 58.546 47.619 17.19 0.00 0.00 4.17
2639 4140 3.031736 ACTTACATACGGAGCTCACCAT 58.968 45.455 17.19 1.53 0.00 3.55
2640 4141 3.181475 ACTTACATACGGAGCTCACCATG 60.181 47.826 17.19 16.02 0.00 3.66
2641 4142 1.485124 ACATACGGAGCTCACCATGA 58.515 50.000 17.19 0.00 0.00 3.07
2642 4143 1.831106 ACATACGGAGCTCACCATGAA 59.169 47.619 17.19 0.00 0.00 2.57
2643 4144 2.159043 ACATACGGAGCTCACCATGAAG 60.159 50.000 17.19 0.00 0.00 3.02
2644 4145 0.824109 TACGGAGCTCACCATGAAGG 59.176 55.000 17.19 0.00 45.67 3.46
2658 4159 5.869753 CCATGAAGGTTCTGAACTACTTG 57.130 43.478 19.05 15.99 0.00 3.16
2659 4160 5.551233 CCATGAAGGTTCTGAACTACTTGA 58.449 41.667 19.05 10.09 0.00 3.02
2660 4161 6.176183 CCATGAAGGTTCTGAACTACTTGAT 58.824 40.000 19.05 11.71 0.00 2.57
2661 4162 6.093219 CCATGAAGGTTCTGAACTACTTGATG 59.907 42.308 20.82 20.82 34.15 3.07
2662 4163 6.419484 TGAAGGTTCTGAACTACTTGATGA 57.581 37.500 19.05 0.00 0.00 2.92
2663 4164 6.459066 TGAAGGTTCTGAACTACTTGATGAG 58.541 40.000 19.05 0.00 0.00 2.90
2664 4165 5.413309 AGGTTCTGAACTACTTGATGAGG 57.587 43.478 19.05 0.00 0.00 3.86
2665 4166 4.841246 AGGTTCTGAACTACTTGATGAGGT 59.159 41.667 19.05 0.00 0.00 3.85
2666 4167 5.308237 AGGTTCTGAACTACTTGATGAGGTT 59.692 40.000 19.05 0.00 0.00 3.50
2667 4168 5.998363 GGTTCTGAACTACTTGATGAGGTTT 59.002 40.000 19.05 0.00 0.00 3.27
2668 4169 6.486993 GGTTCTGAACTACTTGATGAGGTTTT 59.513 38.462 19.05 0.00 0.00 2.43
2669 4170 7.308049 GGTTCTGAACTACTTGATGAGGTTTTC 60.308 40.741 19.05 0.00 0.00 2.29
2670 4171 6.826668 TCTGAACTACTTGATGAGGTTTTCA 58.173 36.000 0.00 0.00 40.85 2.69
2671 4172 7.279615 TCTGAACTACTTGATGAGGTTTTCAA 58.720 34.615 0.00 0.00 39.77 2.69
2672 4173 7.226720 TCTGAACTACTTGATGAGGTTTTCAAC 59.773 37.037 0.00 0.00 39.77 3.18
2673 4174 7.054124 TGAACTACTTGATGAGGTTTTCAACT 58.946 34.615 0.00 0.00 39.77 3.16
2674 4175 7.226720 TGAACTACTTGATGAGGTTTTCAACTC 59.773 37.037 0.00 0.00 39.77 3.01
2675 4176 6.591935 ACTACTTGATGAGGTTTTCAACTCA 58.408 36.000 0.00 0.00 46.62 3.41
2676 4177 5.757850 ACTTGATGAGGTTTTCAACTCAC 57.242 39.130 0.00 0.00 45.54 3.51
2677 4178 5.192927 ACTTGATGAGGTTTTCAACTCACA 58.807 37.500 0.00 0.00 45.54 3.58
2678 4179 5.652014 ACTTGATGAGGTTTTCAACTCACAA 59.348 36.000 0.00 0.00 45.54 3.33
2679 4180 6.322201 ACTTGATGAGGTTTTCAACTCACAAT 59.678 34.615 0.00 0.00 45.54 2.71
2680 4181 6.075762 TGATGAGGTTTTCAACTCACAATG 57.924 37.500 0.00 0.00 45.54 2.82
2681 4182 5.827267 TGATGAGGTTTTCAACTCACAATGA 59.173 36.000 0.00 0.00 45.54 2.57
2682 4183 6.320926 TGATGAGGTTTTCAACTCACAATGAA 59.679 34.615 0.00 0.00 45.54 2.57
2683 4184 6.135290 TGAGGTTTTCAACTCACAATGAAG 57.865 37.500 0.00 0.00 38.71 3.02
2684 4185 5.652014 TGAGGTTTTCAACTCACAATGAAGT 59.348 36.000 0.00 0.00 38.71 3.01
2685 4186 6.136541 AGGTTTTCAACTCACAATGAAGTC 57.863 37.500 0.00 0.00 36.93 3.01
2686 4187 5.888161 AGGTTTTCAACTCACAATGAAGTCT 59.112 36.000 0.00 0.00 36.93 3.24
2687 4188 6.038714 AGGTTTTCAACTCACAATGAAGTCTC 59.961 38.462 0.00 0.00 36.93 3.36
2688 4189 6.183360 GGTTTTCAACTCACAATGAAGTCTCA 60.183 38.462 0.00 0.00 36.93 3.27
2689 4190 7.250569 GTTTTCAACTCACAATGAAGTCTCAA 58.749 34.615 0.00 0.00 36.93 3.02
2690 4191 7.389803 TTTCAACTCACAATGAAGTCTCAAA 57.610 32.000 0.00 0.00 36.93 2.69
2691 4192 6.363577 TCAACTCACAATGAAGTCTCAAAC 57.636 37.500 0.00 0.00 34.49 2.93
2692 4193 6.115446 TCAACTCACAATGAAGTCTCAAACT 58.885 36.000 0.00 0.00 41.10 2.66
2693 4194 7.272244 TCAACTCACAATGAAGTCTCAAACTA 58.728 34.615 0.00 0.00 37.17 2.24
2694 4195 7.224753 TCAACTCACAATGAAGTCTCAAACTAC 59.775 37.037 0.00 0.00 37.17 2.73
2695 4196 6.821388 ACTCACAATGAAGTCTCAAACTACT 58.179 36.000 0.00 0.00 37.17 2.57
2696 4197 6.926272 ACTCACAATGAAGTCTCAAACTACTC 59.074 38.462 0.00 0.00 37.17 2.59
2697 4198 6.816136 TCACAATGAAGTCTCAAACTACTCA 58.184 36.000 0.00 0.00 37.17 3.41
2698 4199 7.445121 TCACAATGAAGTCTCAAACTACTCAT 58.555 34.615 0.00 0.00 37.15 2.90
2699 4200 7.600375 TCACAATGAAGTCTCAAACTACTCATC 59.400 37.037 0.00 0.00 35.38 2.92
2700 4201 7.386025 CACAATGAAGTCTCAAACTACTCATCA 59.614 37.037 0.00 0.00 35.38 3.07
2701 4202 7.386299 ACAATGAAGTCTCAAACTACTCATCAC 59.614 37.037 0.00 0.00 35.38 3.06
2702 4203 5.461526 TGAAGTCTCAAACTACTCATCACG 58.538 41.667 0.00 0.00 37.17 4.35
2703 4204 5.240844 TGAAGTCTCAAACTACTCATCACGA 59.759 40.000 0.00 0.00 37.17 4.35
2704 4205 5.906113 AGTCTCAAACTACTCATCACGAT 57.094 39.130 0.00 0.00 36.07 3.73
2705 4206 6.274157 AGTCTCAAACTACTCATCACGATT 57.726 37.500 0.00 0.00 36.07 3.34
2706 4207 6.692486 AGTCTCAAACTACTCATCACGATTT 58.308 36.000 0.00 0.00 36.07 2.17
2707 4208 6.587990 AGTCTCAAACTACTCATCACGATTTG 59.412 38.462 0.00 0.00 36.07 2.32
2708 4209 6.586463 GTCTCAAACTACTCATCACGATTTGA 59.414 38.462 0.00 0.00 39.11 2.69
2709 4210 7.276658 GTCTCAAACTACTCATCACGATTTGAT 59.723 37.037 0.00 0.00 46.75 2.57
2719 4220 4.159377 TCACGATTTGATGAGGTTTTGC 57.841 40.909 0.00 0.00 0.00 3.68
2720 4221 3.820467 TCACGATTTGATGAGGTTTTGCT 59.180 39.130 0.00 0.00 0.00 3.91
2721 4222 4.083324 TCACGATTTGATGAGGTTTTGCTC 60.083 41.667 0.00 0.00 0.00 4.26
2722 4223 4.074970 ACGATTTGATGAGGTTTTGCTCT 58.925 39.130 0.00 0.00 0.00 4.09
2723 4224 5.122239 CACGATTTGATGAGGTTTTGCTCTA 59.878 40.000 0.00 0.00 0.00 2.43
2724 4225 5.122396 ACGATTTGATGAGGTTTTGCTCTAC 59.878 40.000 0.00 0.00 0.00 2.59
2725 4226 5.122239 CGATTTGATGAGGTTTTGCTCTACA 59.878 40.000 0.00 0.00 0.00 2.74
2726 4227 6.183360 CGATTTGATGAGGTTTTGCTCTACAT 60.183 38.462 0.00 0.00 0.00 2.29
2727 4228 5.885230 TTGATGAGGTTTTGCTCTACATG 57.115 39.130 0.00 0.00 0.00 3.21
2728 4229 5.164620 TGATGAGGTTTTGCTCTACATGA 57.835 39.130 0.00 0.00 0.00 3.07
2729 4230 5.559770 TGATGAGGTTTTGCTCTACATGAA 58.440 37.500 0.00 0.00 0.00 2.57
2730 4231 5.645067 TGATGAGGTTTTGCTCTACATGAAG 59.355 40.000 0.00 0.00 0.00 3.02
2731 4232 4.326826 TGAGGTTTTGCTCTACATGAAGG 58.673 43.478 0.00 0.00 0.00 3.46
2732 4233 4.202461 TGAGGTTTTGCTCTACATGAAGGT 60.202 41.667 0.00 0.00 0.00 3.50
2733 4234 5.012664 TGAGGTTTTGCTCTACATGAAGGTA 59.987 40.000 0.00 0.00 0.00 3.08
2734 4235 5.491982 AGGTTTTGCTCTACATGAAGGTAG 58.508 41.667 0.00 0.00 41.67 3.18
2735 4236 4.636206 GGTTTTGCTCTACATGAAGGTAGG 59.364 45.833 0.00 0.00 40.88 3.18
2736 4237 4.487714 TTTGCTCTACATGAAGGTAGGG 57.512 45.455 0.00 0.19 43.36 3.53
2737 4238 3.116096 TGCTCTACATGAAGGTAGGGT 57.884 47.619 0.00 0.00 42.63 4.34
2738 4239 2.766263 TGCTCTACATGAAGGTAGGGTG 59.234 50.000 0.00 0.00 42.63 4.61
2739 4240 2.483889 GCTCTACATGAAGGTAGGGTGC 60.484 54.545 0.00 3.00 42.63 5.01
2740 4241 3.034635 CTCTACATGAAGGTAGGGTGCT 58.965 50.000 0.00 0.00 40.88 4.40
2741 4242 3.450904 TCTACATGAAGGTAGGGTGCTT 58.549 45.455 0.00 0.00 40.88 3.91
2742 4243 2.496899 ACATGAAGGTAGGGTGCTTG 57.503 50.000 0.00 0.00 0.00 4.01
2743 4244 1.098050 CATGAAGGTAGGGTGCTTGC 58.902 55.000 0.00 0.00 0.00 4.01
2744 4245 0.034089 ATGAAGGTAGGGTGCTTGCC 60.034 55.000 0.00 0.00 0.00 4.52
2751 4252 4.785575 GGGTGCTTGCCCCTTTAT 57.214 55.556 10.55 0.00 42.89 1.40
2752 4253 2.201927 GGGTGCTTGCCCCTTTATG 58.798 57.895 10.55 0.00 42.89 1.90
2753 4254 0.324275 GGGTGCTTGCCCCTTTATGA 60.324 55.000 10.55 0.00 42.89 2.15
2754 4255 1.689258 GGGTGCTTGCCCCTTTATGAT 60.689 52.381 10.55 0.00 42.89 2.45
2755 4256 2.424234 GGGTGCTTGCCCCTTTATGATA 60.424 50.000 10.55 0.00 42.89 2.15
2756 4257 2.623416 GGTGCTTGCCCCTTTATGATAC 59.377 50.000 0.00 0.00 0.00 2.24
2757 4258 3.287222 GTGCTTGCCCCTTTATGATACA 58.713 45.455 0.00 0.00 0.00 2.29
2758 4259 3.891366 GTGCTTGCCCCTTTATGATACAT 59.109 43.478 0.00 0.00 0.00 2.29
2759 4260 4.022849 GTGCTTGCCCCTTTATGATACATC 60.023 45.833 0.00 0.00 0.00 3.06
2760 4261 3.189287 GCTTGCCCCTTTATGATACATCG 59.811 47.826 0.00 0.00 0.00 3.84
2761 4262 4.641396 CTTGCCCCTTTATGATACATCGA 58.359 43.478 0.00 0.00 0.00 3.59
2762 4263 4.908601 TGCCCCTTTATGATACATCGAT 57.091 40.909 0.00 0.00 0.00 3.59
2763 4264 4.832248 TGCCCCTTTATGATACATCGATC 58.168 43.478 0.00 0.00 0.00 3.69
2764 4265 3.865745 GCCCCTTTATGATACATCGATCG 59.134 47.826 9.36 9.36 0.00 3.69
2765 4266 4.620803 GCCCCTTTATGATACATCGATCGT 60.621 45.833 15.94 0.01 0.00 3.73
2766 4267 4.864806 CCCCTTTATGATACATCGATCGTG 59.135 45.833 15.94 14.60 0.00 4.35
2767 4268 5.470368 CCCTTTATGATACATCGATCGTGT 58.530 41.667 21.20 21.20 0.00 4.49
2768 4269 5.926542 CCCTTTATGATACATCGATCGTGTT 59.073 40.000 22.16 13.34 0.00 3.32
2769 4270 7.088272 CCCTTTATGATACATCGATCGTGTTA 58.912 38.462 22.16 10.50 0.00 2.41
2770 4271 7.597369 CCCTTTATGATACATCGATCGTGTTAA 59.403 37.037 22.16 14.34 0.00 2.01
2771 4272 8.639428 CCTTTATGATACATCGATCGTGTTAAG 58.361 37.037 22.16 15.99 0.00 1.85
2772 4273 9.181805 CTTTATGATACATCGATCGTGTTAAGT 57.818 33.333 22.16 12.74 0.00 2.24
2773 4274 6.993175 ATGATACATCGATCGTGTTAAGTG 57.007 37.500 22.16 11.24 0.00 3.16
2774 4275 5.886992 TGATACATCGATCGTGTTAAGTGT 58.113 37.500 22.16 15.06 0.00 3.55
2775 4276 7.018635 TGATACATCGATCGTGTTAAGTGTA 57.981 36.000 22.16 16.25 0.00 2.90
2776 4277 7.130269 TGATACATCGATCGTGTTAAGTGTAG 58.870 38.462 22.16 1.69 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 1393 7.751768 AATCCGAAATCTTGATTAATCCTCC 57.248 36.000 12.90 0.00 0.00 4.30
189 1433 2.287915 CGATGGGTTTCGAATCATGGAC 59.712 50.000 0.00 0.00 41.62 4.02
207 1451 4.819105 TCTTGAGGTATTTGTGACCGAT 57.181 40.909 0.00 0.00 42.21 4.18
211 1455 4.843728 TCCCATCTTGAGGTATTTGTGAC 58.156 43.478 0.00 0.00 0.00 3.67
214 1458 5.203528 CCATTCCCATCTTGAGGTATTTGT 58.796 41.667 0.00 0.00 0.00 2.83
215 1459 4.586001 CCCATTCCCATCTTGAGGTATTTG 59.414 45.833 0.00 0.00 0.00 2.32
216 1460 4.808042 CCCATTCCCATCTTGAGGTATTT 58.192 43.478 0.00 0.00 0.00 1.40
217 1461 3.437052 GCCCATTCCCATCTTGAGGTATT 60.437 47.826 0.00 0.00 0.00 1.89
218 1462 2.108952 GCCCATTCCCATCTTGAGGTAT 59.891 50.000 0.00 0.00 0.00 2.73
219 1463 1.494721 GCCCATTCCCATCTTGAGGTA 59.505 52.381 0.00 0.00 0.00 3.08
306 1551 8.551682 AGGCCATAATTTTCTAATGAAATGGA 57.448 30.769 5.01 0.00 39.30 3.41
316 1563 4.127171 GTCAGCGAGGCCATAATTTTCTA 58.873 43.478 5.01 0.00 0.00 2.10
400 1649 0.830648 CCTGCCCGGTCTTCAGATTA 59.169 55.000 0.00 0.00 0.00 1.75
416 1665 4.838152 CACCGTCCCGATGGCCTG 62.838 72.222 3.32 0.00 41.20 4.85
432 1681 2.951642 CCTTTTCAACTTGTCCAGCTCA 59.048 45.455 0.00 0.00 0.00 4.26
459 1708 0.681887 TCGTCATCCTGGTCGCCTTA 60.682 55.000 0.00 0.00 0.00 2.69
526 1783 1.685765 ATCTCTGCTACCACCGGCA 60.686 57.895 0.00 0.00 36.94 5.69
650 1909 2.421424 GCTGAGCAAACTGGATCGATTT 59.579 45.455 0.00 0.00 0.00 2.17
735 2001 2.913613 CGACTCGTCGTGTACTTTCTT 58.086 47.619 11.05 0.00 46.99 2.52
777 2092 1.990060 AGTCCCCCGACCATCTGTG 60.990 63.158 0.00 0.00 40.12 3.66
778 2093 1.990060 CAGTCCCCCGACCATCTGT 60.990 63.158 0.00 0.00 40.12 3.41
779 2094 2.735772 CCAGTCCCCCGACCATCTG 61.736 68.421 0.00 0.00 40.12 2.90
826 2141 1.248785 GGTCAGTGGAGTCGGCACTA 61.249 60.000 2.20 0.00 30.63 2.74
856 2171 2.738521 CACGTCGGTTGGCCTCAG 60.739 66.667 3.32 0.00 0.00 3.35
967 2282 3.678717 TTAGGTCGAGCGCGCAGTC 62.679 63.158 35.10 21.99 37.46 3.51
968 2283 3.744719 TTAGGTCGAGCGCGCAGT 61.745 61.111 35.10 14.51 37.46 4.40
969 2284 3.248171 GTTAGGTCGAGCGCGCAG 61.248 66.667 35.10 26.04 37.46 5.18
995 2310 1.227973 GGCGAGATCCCCATGGAAC 60.228 63.158 15.22 1.19 45.98 3.62
1308 2635 0.614134 AGAAGTACAGGTCCGGGTCC 60.614 60.000 0.00 4.88 0.00 4.46
1426 2753 2.089887 TACTTGACGCCGTTGCCAGA 62.090 55.000 0.00 0.00 0.00 3.86
1428 2755 1.957186 GTACTTGACGCCGTTGCCA 60.957 57.895 0.00 0.00 0.00 4.92
1627 2957 1.134037 CCCTCGGTAGTAGCAGTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
1629 2959 0.106619 CCCCTCGGTAGTAGCAGTCT 60.107 60.000 0.00 0.00 0.00 3.24
1632 2962 2.846652 CGCCCCTCGGTAGTAGCAG 61.847 68.421 0.00 0.00 33.78 4.24
1633 2963 2.831742 CGCCCCTCGGTAGTAGCA 60.832 66.667 0.00 0.00 33.78 3.49
1657 2987 2.729862 GCACAGCTCGTCGTCGTT 60.730 61.111 1.33 0.00 38.33 3.85
1770 3128 7.193595 AGGGCGTTAATCTTTAAAATCAATCG 58.806 34.615 0.00 0.00 0.00 3.34
1779 3137 6.713450 GGGATCAATAGGGCGTTAATCTTTAA 59.287 38.462 0.00 0.00 0.00 1.52
1817 3306 2.993899 AGTGCAGTATTTCTTTCGGTCG 59.006 45.455 0.00 0.00 0.00 4.79
1826 3315 7.778470 AATCAAGTAGCTAGTGCAGTATTTC 57.222 36.000 0.73 0.00 42.74 2.17
1833 3322 7.275183 ACATTGATAATCAAGTAGCTAGTGCA 58.725 34.615 0.73 0.00 40.05 4.57
1840 3329 7.857885 GGCAGTTTACATTGATAATCAAGTAGC 59.142 37.037 0.00 0.00 40.05 3.58
1841 3330 8.064222 CGGCAGTTTACATTGATAATCAAGTAG 58.936 37.037 0.00 0.00 40.05 2.57
1842 3331 7.011950 CCGGCAGTTTACATTGATAATCAAGTA 59.988 37.037 0.00 0.00 40.05 2.24
1843 3332 6.183360 CCGGCAGTTTACATTGATAATCAAGT 60.183 38.462 0.00 0.00 40.05 3.16
1844 3333 6.201517 CCGGCAGTTTACATTGATAATCAAG 58.798 40.000 0.00 0.00 40.05 3.02
1866 3357 3.689649 AGGAATTAAACTGCTTGTAGCCG 59.310 43.478 0.00 0.00 41.51 5.52
1869 3360 6.797033 CGTTGAAGGAATTAAACTGCTTGTAG 59.203 38.462 0.28 0.00 0.00 2.74
1873 3364 5.763204 TCTCGTTGAAGGAATTAAACTGCTT 59.237 36.000 0.00 0.00 0.00 3.91
1886 3377 2.972625 TGCATTACCTCTCGTTGAAGG 58.027 47.619 0.00 0.00 0.00 3.46
1894 3385 6.039717 TGCCTGAAAATATTGCATTACCTCTC 59.960 38.462 0.00 0.00 0.00 3.20
1898 3389 7.041848 GGATTTGCCTGAAAATATTGCATTACC 60.042 37.037 0.00 0.67 29.89 2.85
1899 3390 7.495279 TGGATTTGCCTGAAAATATTGCATTAC 59.505 33.333 0.00 0.00 37.63 1.89
1901 3392 6.316890 GTGGATTTGCCTGAAAATATTGCATT 59.683 34.615 0.00 0.00 37.63 3.56
1934 3425 8.548721 GGACACATAGAACTAAAATTCGTATGG 58.451 37.037 0.00 0.00 33.57 2.74
1989 3480 6.426633 CCAAATTTACCAACCAATTGACCTTC 59.573 38.462 7.12 0.00 38.15 3.46
2022 3513 2.154798 CTGCGGTCCAAACGAGGAGA 62.155 60.000 0.00 0.00 38.64 3.71
2039 3530 4.403752 TCATCTGACTTCTACACATCCCTG 59.596 45.833 0.00 0.00 0.00 4.45
2040 3531 4.614475 TCATCTGACTTCTACACATCCCT 58.386 43.478 0.00 0.00 0.00 4.20
2042 3533 6.650807 TGTTTTCATCTGACTTCTACACATCC 59.349 38.462 0.00 0.00 0.00 3.51
2051 3542 5.198274 GTTCGTGTGTTTTCATCTGACTTC 58.802 41.667 0.00 0.00 0.00 3.01
2057 3548 7.807907 GGATAATTTGTTCGTGTGTTTTCATCT 59.192 33.333 0.00 0.00 0.00 2.90
2060 3551 5.910166 CGGATAATTTGTTCGTGTGTTTTCA 59.090 36.000 0.00 0.00 0.00 2.69
2071 3562 4.201920 GCTCTTCCCACGGATAATTTGTTC 60.202 45.833 0.00 0.00 0.00 3.18
2085 3576 0.914644 CCCTCTGATTGCTCTTCCCA 59.085 55.000 0.00 0.00 0.00 4.37
2107 3599 1.668419 ATTAGTCTGTGCGCCATTCC 58.332 50.000 4.18 0.00 0.00 3.01
2115 3607 7.763356 TCAGAGAGTTAGTAATTAGTCTGTGC 58.237 38.462 6.36 0.00 33.44 4.57
2175 3667 3.708451 ACTTGTTCAAACCCTCCAAGTT 58.292 40.909 0.00 0.00 42.09 2.66
2176 3668 3.382083 ACTTGTTCAAACCCTCCAAGT 57.618 42.857 0.00 0.00 40.50 3.16
2177 3669 3.699038 TCAACTTGTTCAAACCCTCCAAG 59.301 43.478 0.00 0.00 38.71 3.61
2178 3670 3.702792 TCAACTTGTTCAAACCCTCCAA 58.297 40.909 0.00 0.00 0.00 3.53
2179 3671 3.374042 TCAACTTGTTCAAACCCTCCA 57.626 42.857 0.00 0.00 0.00 3.86
2180 3672 4.729227 TTTCAACTTGTTCAAACCCTCC 57.271 40.909 0.00 0.00 0.00 4.30
2181 3673 5.720202 ACTTTTCAACTTGTTCAAACCCTC 58.280 37.500 0.00 0.00 0.00 4.30
2222 3714 3.078891 ACCCTCAAAAGCCTCATTCTC 57.921 47.619 0.00 0.00 0.00 2.87
2227 3719 2.038659 CCAAAACCCTCAAAAGCCTCA 58.961 47.619 0.00 0.00 0.00 3.86
2228 3720 1.344438 CCCAAAACCCTCAAAAGCCTC 59.656 52.381 0.00 0.00 0.00 4.70
2229 3721 1.062505 TCCCAAAACCCTCAAAAGCCT 60.063 47.619 0.00 0.00 0.00 4.58
2230 3722 1.344438 CTCCCAAAACCCTCAAAAGCC 59.656 52.381 0.00 0.00 0.00 4.35
2231 3723 2.039418 ACTCCCAAAACCCTCAAAAGC 58.961 47.619 0.00 0.00 0.00 3.51
2232 3724 4.441792 CAAACTCCCAAAACCCTCAAAAG 58.558 43.478 0.00 0.00 0.00 2.27
2233 3725 3.198853 CCAAACTCCCAAAACCCTCAAAA 59.801 43.478 0.00 0.00 0.00 2.44
2234 3726 2.769095 CCAAACTCCCAAAACCCTCAAA 59.231 45.455 0.00 0.00 0.00 2.69
2235 3727 2.292587 ACCAAACTCCCAAAACCCTCAA 60.293 45.455 0.00 0.00 0.00 3.02
2250 3751 3.315191 TGCAAAGTGCTTAGAGACCAAAC 59.685 43.478 1.43 0.00 45.31 2.93
2276 3777 4.603231 TGGTTTTGTTACGTGAAGTGTC 57.397 40.909 0.00 0.00 0.00 3.67
2295 3796 7.041167 TGTCGATGCTATCAAAAAGGATATTGG 60.041 37.037 0.00 0.00 0.00 3.16
2319 3820 6.388619 AAATCACCAAGTCCTTAGGTATGT 57.611 37.500 0.00 0.00 33.49 2.29
2375 3876 2.703536 TCAAGGACAAGTGTTAGCAGGA 59.296 45.455 0.00 0.00 0.00 3.86
2405 3906 6.194967 CCCCAAAAGATACAAATTAGACCCT 58.805 40.000 0.00 0.00 0.00 4.34
2414 3915 5.710099 CAGCTTAGACCCCAAAAGATACAAA 59.290 40.000 0.00 0.00 0.00 2.83
2451 3952 9.801873 GTTTGACAACCACATAAATGCTATAAT 57.198 29.630 0.00 0.00 0.00 1.28
2452 3953 7.965655 CGTTTGACAACCACATAAATGCTATAA 59.034 33.333 0.00 0.00 0.00 0.98
2453 3954 7.334671 TCGTTTGACAACCACATAAATGCTATA 59.665 33.333 0.00 0.00 0.00 1.31
2454 3955 6.150307 TCGTTTGACAACCACATAAATGCTAT 59.850 34.615 0.00 0.00 0.00 2.97
2455 3956 5.470437 TCGTTTGACAACCACATAAATGCTA 59.530 36.000 0.00 0.00 0.00 3.49
2456 3957 4.277174 TCGTTTGACAACCACATAAATGCT 59.723 37.500 0.00 0.00 0.00 3.79
2457 3958 4.541779 TCGTTTGACAACCACATAAATGC 58.458 39.130 0.00 0.00 0.00 3.56
2458 3959 7.456684 TTTTCGTTTGACAACCACATAAATG 57.543 32.000 0.00 0.00 0.00 2.32
2459 3960 7.923344 TGATTTTCGTTTGACAACCACATAAAT 59.077 29.630 0.00 0.00 0.00 1.40
2460 3961 7.258441 TGATTTTCGTTTGACAACCACATAAA 58.742 30.769 0.00 0.00 0.00 1.40
2461 3962 6.796426 TGATTTTCGTTTGACAACCACATAA 58.204 32.000 0.00 0.00 0.00 1.90
2462 3963 6.378710 TGATTTTCGTTTGACAACCACATA 57.621 33.333 0.00 0.00 0.00 2.29
2463 3964 5.255710 TGATTTTCGTTTGACAACCACAT 57.744 34.783 0.00 0.00 0.00 3.21
2464 3965 4.703645 TGATTTTCGTTTGACAACCACA 57.296 36.364 0.00 0.00 0.00 4.17
2465 3966 5.336744 TCTTGATTTTCGTTTGACAACCAC 58.663 37.500 0.00 0.00 0.00 4.16
2466 3967 5.568685 TCTTGATTTTCGTTTGACAACCA 57.431 34.783 0.00 0.00 0.00 3.67
2467 3968 6.438763 AGATCTTGATTTTCGTTTGACAACC 58.561 36.000 0.00 0.00 0.00 3.77
2468 3969 7.914537 AAGATCTTGATTTTCGTTTGACAAC 57.085 32.000 7.30 0.00 0.00 3.32
2469 3970 7.973388 ACAAAGATCTTGATTTTCGTTTGACAA 59.027 29.630 9.17 0.00 0.00 3.18
2470 3971 7.479980 ACAAAGATCTTGATTTTCGTTTGACA 58.520 30.769 9.17 0.00 0.00 3.58
2471 3972 7.914537 ACAAAGATCTTGATTTTCGTTTGAC 57.085 32.000 9.17 0.00 0.00 3.18
2472 3973 8.187480 TGAACAAAGATCTTGATTTTCGTTTGA 58.813 29.630 9.17 0.00 0.00 2.69
2473 3974 8.261908 GTGAACAAAGATCTTGATTTTCGTTTG 58.738 33.333 9.17 1.86 0.00 2.93
2474 3975 7.973388 TGTGAACAAAGATCTTGATTTTCGTTT 59.027 29.630 9.17 0.00 0.00 3.60
2475 3976 7.479980 TGTGAACAAAGATCTTGATTTTCGTT 58.520 30.769 9.17 4.45 0.00 3.85
2476 3977 7.026631 TGTGAACAAAGATCTTGATTTTCGT 57.973 32.000 9.17 0.00 0.00 3.85
2477 3978 7.645340 ACTTGTGAACAAAGATCTTGATTTTCG 59.355 33.333 9.17 0.68 35.15 3.46
2478 3979 8.862550 ACTTGTGAACAAAGATCTTGATTTTC 57.137 30.769 9.17 9.63 35.15 2.29
2479 3980 9.090692 CAACTTGTGAACAAAGATCTTGATTTT 57.909 29.630 9.17 0.00 35.15 1.82
2480 3981 8.469200 TCAACTTGTGAACAAAGATCTTGATTT 58.531 29.630 9.17 2.45 35.15 2.17
2481 3982 7.999679 TCAACTTGTGAACAAAGATCTTGATT 58.000 30.769 9.17 6.45 35.15 2.57
2482 3983 7.572523 TCAACTTGTGAACAAAGATCTTGAT 57.427 32.000 9.17 0.00 35.15 2.57
2483 3984 7.389803 TTCAACTTGTGAACAAAGATCTTGA 57.610 32.000 9.17 0.00 41.47 3.02
2518 4019 9.547279 AAAGAAAAAGGACCATGGTAAGATTAT 57.453 29.630 19.80 4.36 0.00 1.28
2519 4020 8.950007 AAAGAAAAAGGACCATGGTAAGATTA 57.050 30.769 19.80 0.00 0.00 1.75
2520 4021 7.508977 TGAAAGAAAAAGGACCATGGTAAGATT 59.491 33.333 19.80 9.66 0.00 2.40
2521 4022 7.010160 TGAAAGAAAAAGGACCATGGTAAGAT 58.990 34.615 19.80 1.73 0.00 2.40
2522 4023 6.264518 GTGAAAGAAAAAGGACCATGGTAAGA 59.735 38.462 19.80 0.00 0.00 2.10
2523 4024 6.447162 GTGAAAGAAAAAGGACCATGGTAAG 58.553 40.000 19.80 0.00 0.00 2.34
2524 4025 5.303333 GGTGAAAGAAAAAGGACCATGGTAA 59.697 40.000 19.80 0.00 0.00 2.85
2525 4026 4.830600 GGTGAAAGAAAAAGGACCATGGTA 59.169 41.667 19.80 0.00 0.00 3.25
2526 4027 3.641436 GGTGAAAGAAAAAGGACCATGGT 59.359 43.478 19.89 19.89 0.00 3.55
2527 4028 3.640967 TGGTGAAAGAAAAAGGACCATGG 59.359 43.478 11.19 11.19 0.00 3.66
2528 4029 4.797275 GCTGGTGAAAGAAAAAGGACCATG 60.797 45.833 0.00 0.00 33.13 3.66
2529 4030 3.321968 GCTGGTGAAAGAAAAAGGACCAT 59.678 43.478 0.00 0.00 33.13 3.55
2530 4031 2.693074 GCTGGTGAAAGAAAAAGGACCA 59.307 45.455 0.00 0.00 32.60 4.02
2531 4032 2.959030 AGCTGGTGAAAGAAAAAGGACC 59.041 45.455 0.00 0.00 0.00 4.46
2532 4033 3.632145 TGAGCTGGTGAAAGAAAAAGGAC 59.368 43.478 0.00 0.00 0.00 3.85
2533 4034 3.897239 TGAGCTGGTGAAAGAAAAAGGA 58.103 40.909 0.00 0.00 0.00 3.36
2534 4035 4.553323 CATGAGCTGGTGAAAGAAAAAGG 58.447 43.478 0.00 0.00 0.00 3.11
2535 4036 3.985925 GCATGAGCTGGTGAAAGAAAAAG 59.014 43.478 0.00 0.00 37.91 2.27
2536 4037 3.981211 GCATGAGCTGGTGAAAGAAAAA 58.019 40.909 0.00 0.00 37.91 1.94
2537 4038 3.648339 GCATGAGCTGGTGAAAGAAAA 57.352 42.857 0.00 0.00 37.91 2.29
2550 4051 3.461061 TGTAAGTCTGCATAGCATGAGC 58.539 45.455 0.00 0.00 38.13 4.26
2551 4052 5.295152 TCATGTAAGTCTGCATAGCATGAG 58.705 41.667 0.00 0.00 38.13 2.90
2552 4053 5.280654 TCATGTAAGTCTGCATAGCATGA 57.719 39.130 0.00 10.37 38.13 3.07
2553 4054 5.617087 GCATCATGTAAGTCTGCATAGCATG 60.617 44.000 0.00 0.00 38.13 4.06
2554 4055 4.454847 GCATCATGTAAGTCTGCATAGCAT 59.545 41.667 0.00 0.00 38.13 3.79
2555 4056 3.811497 GCATCATGTAAGTCTGCATAGCA 59.189 43.478 0.00 0.00 36.92 3.49
2556 4057 3.811497 TGCATCATGTAAGTCTGCATAGC 59.189 43.478 0.00 0.00 37.88 2.97
2557 4058 4.812626 TGTGCATCATGTAAGTCTGCATAG 59.187 41.667 0.00 0.00 43.89 2.23
2558 4059 4.768583 TGTGCATCATGTAAGTCTGCATA 58.231 39.130 0.00 0.00 43.89 3.14
2559 4060 3.613030 TGTGCATCATGTAAGTCTGCAT 58.387 40.909 0.00 0.00 43.89 3.96
2560 4061 3.056588 TGTGCATCATGTAAGTCTGCA 57.943 42.857 0.00 0.00 40.29 4.41
2561 4062 5.936686 ATATGTGCATCATGTAAGTCTGC 57.063 39.130 10.77 0.00 37.91 4.26
2577 4078 0.248743 CCAAGCGCCTGCAATATGTG 60.249 55.000 2.29 0.00 46.23 3.21
2578 4079 2.008268 GCCAAGCGCCTGCAATATGT 62.008 55.000 2.29 0.00 46.23 2.29
2579 4080 1.299620 GCCAAGCGCCTGCAATATG 60.300 57.895 2.29 0.00 46.23 1.78
2580 4081 1.111116 ATGCCAAGCGCCTGCAATAT 61.111 50.000 18.16 1.78 46.23 1.28
2581 4082 1.727511 GATGCCAAGCGCCTGCAATA 61.728 55.000 18.16 0.00 46.23 1.90
2582 4083 3.072468 ATGCCAAGCGCCTGCAAT 61.072 55.556 18.16 3.36 46.23 3.56
2583 4084 3.751246 GATGCCAAGCGCCTGCAA 61.751 61.111 18.16 1.03 46.23 4.08
2585 4086 3.751246 TTGATGCCAAGCGCCTGC 61.751 61.111 2.29 4.89 43.24 4.85
2586 4087 1.870055 AAGTTGATGCCAAGCGCCTG 61.870 55.000 2.29 0.00 36.24 4.85
2587 4088 1.589716 GAAGTTGATGCCAAGCGCCT 61.590 55.000 2.29 0.00 36.24 5.52
2588 4089 1.153958 GAAGTTGATGCCAAGCGCC 60.154 57.895 2.29 0.00 36.24 6.53
2589 4090 1.086696 TAGAAGTTGATGCCAAGCGC 58.913 50.000 0.00 0.00 38.31 5.92
2590 4091 2.483877 TGTTAGAAGTTGATGCCAAGCG 59.516 45.455 0.00 0.00 32.06 4.68
2591 4092 4.022849 AGTTGTTAGAAGTTGATGCCAAGC 60.023 41.667 0.00 0.00 32.06 4.01
2592 4093 5.695851 AGTTGTTAGAAGTTGATGCCAAG 57.304 39.130 0.00 0.00 32.06 3.61
2593 4094 6.296026 AGTAGTTGTTAGAAGTTGATGCCAA 58.704 36.000 0.00 0.00 0.00 4.52
2594 4095 5.865085 AGTAGTTGTTAGAAGTTGATGCCA 58.135 37.500 0.00 0.00 0.00 4.92
2595 4096 7.097834 AGTAGTAGTTGTTAGAAGTTGATGCC 58.902 38.462 0.00 0.00 0.00 4.40
2596 4097 8.535690 AAGTAGTAGTTGTTAGAAGTTGATGC 57.464 34.615 0.00 0.00 0.00 3.91
2603 4104 9.713740 CCGTATGTAAGTAGTAGTTGTTAGAAG 57.286 37.037 0.16 0.00 0.00 2.85
2604 4105 9.448438 TCCGTATGTAAGTAGTAGTTGTTAGAA 57.552 33.333 0.16 0.00 0.00 2.10
2605 4106 9.102757 CTCCGTATGTAAGTAGTAGTTGTTAGA 57.897 37.037 0.16 0.00 0.00 2.10
2606 4107 7.854916 GCTCCGTATGTAAGTAGTAGTTGTTAG 59.145 40.741 0.16 0.00 0.00 2.34
2607 4108 7.554118 AGCTCCGTATGTAAGTAGTAGTTGTTA 59.446 37.037 0.16 0.00 0.00 2.41
2608 4109 6.376581 AGCTCCGTATGTAAGTAGTAGTTGTT 59.623 38.462 0.16 0.00 0.00 2.83
2609 4110 5.884792 AGCTCCGTATGTAAGTAGTAGTTGT 59.115 40.000 0.16 0.00 0.00 3.32
2610 4111 6.037940 TGAGCTCCGTATGTAAGTAGTAGTTG 59.962 42.308 12.15 0.00 0.00 3.16
2611 4112 6.038050 GTGAGCTCCGTATGTAAGTAGTAGTT 59.962 42.308 12.15 0.00 0.00 2.24
2612 4113 5.526846 GTGAGCTCCGTATGTAAGTAGTAGT 59.473 44.000 12.15 0.00 0.00 2.73
2613 4114 5.049543 GGTGAGCTCCGTATGTAAGTAGTAG 60.050 48.000 12.15 0.00 0.00 2.57
2614 4115 4.818546 GGTGAGCTCCGTATGTAAGTAGTA 59.181 45.833 12.15 0.00 0.00 1.82
2615 4116 3.631227 GGTGAGCTCCGTATGTAAGTAGT 59.369 47.826 12.15 0.00 0.00 2.73
2616 4117 3.630769 TGGTGAGCTCCGTATGTAAGTAG 59.369 47.826 12.15 0.00 0.00 2.57
2617 4118 3.623703 TGGTGAGCTCCGTATGTAAGTA 58.376 45.455 12.15 0.00 0.00 2.24
2618 4119 2.453521 TGGTGAGCTCCGTATGTAAGT 58.546 47.619 12.15 0.00 0.00 2.24
2619 4120 3.068165 TCATGGTGAGCTCCGTATGTAAG 59.932 47.826 12.15 0.00 0.00 2.34
2620 4121 3.028130 TCATGGTGAGCTCCGTATGTAA 58.972 45.455 12.15 0.00 0.00 2.41
2621 4122 2.661718 TCATGGTGAGCTCCGTATGTA 58.338 47.619 12.15 1.32 0.00 2.29
2622 4123 1.485124 TCATGGTGAGCTCCGTATGT 58.515 50.000 12.15 0.00 0.00 2.29
2623 4124 2.477825 CTTCATGGTGAGCTCCGTATG 58.522 52.381 12.15 12.33 0.00 2.39
2624 4125 1.414181 CCTTCATGGTGAGCTCCGTAT 59.586 52.381 12.15 0.00 0.00 3.06
2625 4126 0.824109 CCTTCATGGTGAGCTCCGTA 59.176 55.000 12.15 0.00 0.00 4.02
2626 4127 1.599047 CCTTCATGGTGAGCTCCGT 59.401 57.895 12.15 0.00 0.00 4.69
2627 4128 4.528674 CCTTCATGGTGAGCTCCG 57.471 61.111 12.15 0.00 0.00 4.63
2636 4137 5.551233 TCAAGTAGTTCAGAACCTTCATGG 58.449 41.667 9.85 0.00 42.93 3.66
2637 4138 6.875726 TCATCAAGTAGTTCAGAACCTTCATG 59.124 38.462 9.85 9.22 0.00 3.07
2638 4139 7.009179 TCATCAAGTAGTTCAGAACCTTCAT 57.991 36.000 9.85 0.00 0.00 2.57
2639 4140 6.419484 TCATCAAGTAGTTCAGAACCTTCA 57.581 37.500 9.85 0.00 0.00 3.02
2640 4141 5.872070 CCTCATCAAGTAGTTCAGAACCTTC 59.128 44.000 9.85 1.26 0.00 3.46
2641 4142 5.308237 ACCTCATCAAGTAGTTCAGAACCTT 59.692 40.000 9.85 4.49 0.00 3.50
2642 4143 4.841246 ACCTCATCAAGTAGTTCAGAACCT 59.159 41.667 9.85 0.00 0.00 3.50
2643 4144 5.153950 ACCTCATCAAGTAGTTCAGAACC 57.846 43.478 9.85 0.00 0.00 3.62
2644 4145 7.226720 TGAAAACCTCATCAAGTAGTTCAGAAC 59.773 37.037 5.00 5.00 0.00 3.01
2645 4146 7.279615 TGAAAACCTCATCAAGTAGTTCAGAA 58.720 34.615 0.00 0.00 0.00 3.02
2646 4147 6.826668 TGAAAACCTCATCAAGTAGTTCAGA 58.173 36.000 0.00 0.00 0.00 3.27
2647 4148 7.355778 GTTGAAAACCTCATCAAGTAGTTCAG 58.644 38.462 0.00 0.00 42.21 3.02
2648 4149 7.259290 GTTGAAAACCTCATCAAGTAGTTCA 57.741 36.000 0.00 0.00 42.21 3.18
2663 4164 7.628366 TTGAGACTTCATTGTGAGTTGAAAACC 60.628 37.037 0.00 0.00 39.58 3.27
2664 4165 7.250569 TTGAGACTTCATTGTGAGTTGAAAAC 58.749 34.615 0.00 0.00 39.24 2.43
2665 4166 7.389803 TTGAGACTTCATTGTGAGTTGAAAA 57.610 32.000 0.00 0.00 31.85 2.29
2666 4167 7.121168 AGTTTGAGACTTCATTGTGAGTTGAAA 59.879 33.333 0.00 0.00 33.92 2.69
2667 4168 6.599244 AGTTTGAGACTTCATTGTGAGTTGAA 59.401 34.615 0.00 0.00 33.92 2.69
2668 4169 6.115446 AGTTTGAGACTTCATTGTGAGTTGA 58.885 36.000 0.00 0.00 33.92 3.18
2669 4170 6.369059 AGTTTGAGACTTCATTGTGAGTTG 57.631 37.500 0.00 0.00 33.92 3.16
2670 4171 7.275920 AGTAGTTTGAGACTTCATTGTGAGTT 58.724 34.615 0.00 0.00 39.86 3.01
2671 4172 6.821388 AGTAGTTTGAGACTTCATTGTGAGT 58.179 36.000 0.00 0.00 39.86 3.41
2672 4173 6.925718 TGAGTAGTTTGAGACTTCATTGTGAG 59.074 38.462 0.00 0.00 39.86 3.51
2673 4174 6.816136 TGAGTAGTTTGAGACTTCATTGTGA 58.184 36.000 0.00 0.00 39.86 3.58
2674 4175 7.386025 TGATGAGTAGTTTGAGACTTCATTGTG 59.614 37.037 0.00 0.00 36.45 3.33
2675 4176 7.386299 GTGATGAGTAGTTTGAGACTTCATTGT 59.614 37.037 0.00 0.00 36.45 2.71
2676 4177 7.411264 CGTGATGAGTAGTTTGAGACTTCATTG 60.411 40.741 0.00 0.00 36.45 2.82
2677 4178 6.587990 CGTGATGAGTAGTTTGAGACTTCATT 59.412 38.462 0.00 0.00 36.45 2.57
2678 4179 6.071896 TCGTGATGAGTAGTTTGAGACTTCAT 60.072 38.462 0.00 0.00 38.13 2.57
2679 4180 5.240844 TCGTGATGAGTAGTTTGAGACTTCA 59.759 40.000 0.00 0.00 39.86 3.02
2680 4181 5.700846 TCGTGATGAGTAGTTTGAGACTTC 58.299 41.667 0.00 0.00 39.86 3.01
2681 4182 5.707242 TCGTGATGAGTAGTTTGAGACTT 57.293 39.130 0.00 0.00 39.86 3.01
2682 4183 5.906113 ATCGTGATGAGTAGTTTGAGACT 57.094 39.130 0.00 0.00 42.55 3.24
2683 4184 6.586463 TCAAATCGTGATGAGTAGTTTGAGAC 59.414 38.462 0.00 0.00 32.34 3.36
2684 4185 6.687604 TCAAATCGTGATGAGTAGTTTGAGA 58.312 36.000 0.00 0.00 32.34 3.27
2685 4186 6.951256 TCAAATCGTGATGAGTAGTTTGAG 57.049 37.500 0.00 0.00 32.34 3.02
2698 4199 3.820467 AGCAAAACCTCATCAAATCGTGA 59.180 39.130 0.00 0.00 41.67 4.35
2699 4200 4.083110 AGAGCAAAACCTCATCAAATCGTG 60.083 41.667 0.00 0.00 34.26 4.35
2700 4201 4.074970 AGAGCAAAACCTCATCAAATCGT 58.925 39.130 0.00 0.00 34.26 3.73
2701 4202 4.691860 AGAGCAAAACCTCATCAAATCG 57.308 40.909 0.00 0.00 34.26 3.34
2702 4203 6.500684 TGTAGAGCAAAACCTCATCAAATC 57.499 37.500 0.00 0.00 34.26 2.17
2703 4204 6.660521 TCATGTAGAGCAAAACCTCATCAAAT 59.339 34.615 0.00 0.00 34.26 2.32
2704 4205 6.003326 TCATGTAGAGCAAAACCTCATCAAA 58.997 36.000 0.00 0.00 34.26 2.69
2705 4206 5.559770 TCATGTAGAGCAAAACCTCATCAA 58.440 37.500 0.00 0.00 34.26 2.57
2706 4207 5.164620 TCATGTAGAGCAAAACCTCATCA 57.835 39.130 0.00 0.00 34.26 3.07
2707 4208 5.065731 CCTTCATGTAGAGCAAAACCTCATC 59.934 44.000 0.12 0.00 34.26 2.92
2708 4209 4.946157 CCTTCATGTAGAGCAAAACCTCAT 59.054 41.667 0.12 0.00 34.26 2.90
2709 4210 4.202461 ACCTTCATGTAGAGCAAAACCTCA 60.202 41.667 0.12 0.00 34.26 3.86
2710 4211 4.327680 ACCTTCATGTAGAGCAAAACCTC 58.672 43.478 0.12 0.00 0.00 3.85
2711 4212 4.373156 ACCTTCATGTAGAGCAAAACCT 57.627 40.909 0.12 0.00 0.00 3.50
2712 4213 4.636206 CCTACCTTCATGTAGAGCAAAACC 59.364 45.833 0.12 0.00 40.56 3.27
2713 4214 4.636206 CCCTACCTTCATGTAGAGCAAAAC 59.364 45.833 0.12 0.00 40.56 2.43
2714 4215 4.288626 ACCCTACCTTCATGTAGAGCAAAA 59.711 41.667 0.12 0.00 40.56 2.44
2715 4216 3.844211 ACCCTACCTTCATGTAGAGCAAA 59.156 43.478 0.12 0.00 40.56 3.68
2716 4217 3.197766 CACCCTACCTTCATGTAGAGCAA 59.802 47.826 0.12 0.00 40.56 3.91
2717 4218 2.766263 CACCCTACCTTCATGTAGAGCA 59.234 50.000 0.12 0.00 40.56 4.26
2718 4219 2.483889 GCACCCTACCTTCATGTAGAGC 60.484 54.545 0.12 0.00 40.56 4.09
2719 4220 3.034635 AGCACCCTACCTTCATGTAGAG 58.965 50.000 0.12 0.00 40.56 2.43
2720 4221 3.116096 AGCACCCTACCTTCATGTAGA 57.884 47.619 0.12 0.00 40.56 2.59
2721 4222 3.535561 CAAGCACCCTACCTTCATGTAG 58.464 50.000 0.00 0.00 38.34 2.74
2722 4223 2.355716 GCAAGCACCCTACCTTCATGTA 60.356 50.000 0.00 0.00 0.00 2.29
2723 4224 1.614317 GCAAGCACCCTACCTTCATGT 60.614 52.381 0.00 0.00 0.00 3.21
2724 4225 1.098050 GCAAGCACCCTACCTTCATG 58.902 55.000 0.00 0.00 0.00 3.07
2725 4226 0.034089 GGCAAGCACCCTACCTTCAT 60.034 55.000 0.00 0.00 0.00 2.57
2726 4227 1.378762 GGCAAGCACCCTACCTTCA 59.621 57.895 0.00 0.00 0.00 3.02
2727 4228 4.320910 GGCAAGCACCCTACCTTC 57.679 61.111 0.00 0.00 0.00 3.46
2735 4236 1.780503 ATCATAAAGGGGCAAGCACC 58.219 50.000 4.86 4.86 40.57 5.01
2736 4237 3.287222 TGTATCATAAAGGGGCAAGCAC 58.713 45.455 0.00 0.00 0.00 4.40
2737 4238 3.660970 TGTATCATAAAGGGGCAAGCA 57.339 42.857 0.00 0.00 0.00 3.91
2738 4239 3.189287 CGATGTATCATAAAGGGGCAAGC 59.811 47.826 0.00 0.00 0.00 4.01
2739 4240 4.641396 TCGATGTATCATAAAGGGGCAAG 58.359 43.478 0.00 0.00 0.00 4.01
2740 4241 4.698201 TCGATGTATCATAAAGGGGCAA 57.302 40.909 0.00 0.00 0.00 4.52
2741 4242 4.620567 CGATCGATGTATCATAAAGGGGCA 60.621 45.833 10.26 0.00 0.00 5.36
2742 4243 3.865745 CGATCGATGTATCATAAAGGGGC 59.134 47.826 10.26 0.00 0.00 5.80
2743 4244 4.864806 CACGATCGATGTATCATAAAGGGG 59.135 45.833 24.34 0.00 0.00 4.79
2744 4245 5.470368 ACACGATCGATGTATCATAAAGGG 58.530 41.667 24.34 0.00 0.00 3.95
2745 4246 8.515473 TTAACACGATCGATGTATCATAAAGG 57.485 34.615 24.34 0.00 0.00 3.11
2746 4247 9.181805 ACTTAACACGATCGATGTATCATAAAG 57.818 33.333 24.34 17.46 0.00 1.85
2747 4248 8.964150 CACTTAACACGATCGATGTATCATAAA 58.036 33.333 24.34 9.25 0.00 1.40
2748 4249 8.132995 ACACTTAACACGATCGATGTATCATAA 58.867 33.333 24.34 14.61 0.00 1.90
2749 4250 7.645402 ACACTTAACACGATCGATGTATCATA 58.355 34.615 24.34 8.62 0.00 2.15
2750 4251 6.504398 ACACTTAACACGATCGATGTATCAT 58.496 36.000 24.34 9.53 0.00 2.45
2751 4252 5.886992 ACACTTAACACGATCGATGTATCA 58.113 37.500 24.34 8.46 0.00 2.15
2752 4253 7.536225 CTACACTTAACACGATCGATGTATC 57.464 40.000 24.34 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.