Multiple sequence alignment - TraesCS7B01G345100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G345100 chr7B 100.000 3259 0 0 1 3259 600966444 600963186 0.000000e+00 6019.0
1 TraesCS7B01G345100 chr7B 90.070 574 51 4 1 570 488365184 488365755 0.000000e+00 739.0
2 TraesCS7B01G345100 chr7B 88.328 574 58 7 1 570 180486233 180486801 0.000000e+00 680.0
3 TraesCS7B01G345100 chr7B 83.678 435 41 14 2838 3257 600844438 600844019 1.830000e-102 383.0
4 TraesCS7B01G345100 chr7B 82.418 91 14 2 1372 1461 202824070 202824159 9.690000e-11 78.7
5 TraesCS7B01G345100 chr7B 79.121 91 15 4 1375 1463 524036784 524036696 3.510000e-05 60.2
6 TraesCS7B01G345100 chr7D 89.123 1848 111 43 783 2571 553828699 553830515 0.000000e+00 2217.0
7 TraesCS7B01G345100 chr7D 89.292 579 55 5 1 575 4749974 4750549 0.000000e+00 719.0
8 TraesCS7B01G345100 chr7D 88.652 282 22 3 2824 3103 553830730 553831003 5.210000e-88 335.0
9 TraesCS7B01G345100 chr7D 78.261 184 34 4 2822 3005 633355429 633355252 2.660000e-21 113.0
10 TraesCS7B01G345100 chr7D 79.433 141 29 0 2822 2962 153783531 153783671 2.070000e-17 100.0
11 TraesCS7B01G345100 chr7D 82.418 91 14 2 1372 1461 231381079 231381168 9.690000e-11 78.7
12 TraesCS7B01G345100 chr7D 79.121 91 15 4 1375 1463 495704375 495704287 3.510000e-05 60.2
13 TraesCS7B01G345100 chr7A 88.162 1850 105 48 783 2571 640551227 640549431 0.000000e+00 2098.0
14 TraesCS7B01G345100 chr7A 84.884 430 43 9 2838 3257 640549243 640548826 6.510000e-112 414.0
15 TraesCS7B01G345100 chr7A 78.261 184 32 4 2822 3005 733797970 733798145 9.560000e-21 111.0
16 TraesCS7B01G345100 chr7A 96.000 50 2 0 2729 2778 640549290 640549241 7.490000e-12 82.4
17 TraesCS7B01G345100 chr7A 82.418 91 14 2 1372 1461 244479856 244479945 9.690000e-11 78.7
18 TraesCS7B01G345100 chr7A 100.000 28 0 0 1375 1402 561583782 561583755 6.000000e-03 52.8
19 TraesCS7B01G345100 chr1B 90.625 576 48 4 1 572 646182446 646181873 0.000000e+00 760.0
20 TraesCS7B01G345100 chr1B 86.949 590 69 5 2 584 617901320 617900732 0.000000e+00 656.0
21 TraesCS7B01G345100 chr1B 87.108 574 66 5 1 570 10950246 10950815 0.000000e+00 643.0
22 TraesCS7B01G345100 chr2B 88.831 573 58 4 1 570 388586452 388585883 0.000000e+00 699.0
23 TraesCS7B01G345100 chr2B 87.108 574 68 4 2 570 28413212 28412640 0.000000e+00 645.0
24 TraesCS7B01G345100 chr2B 81.560 141 25 1 2866 3005 200593984 200594124 7.390000e-22 115.0
25 TraesCS7B01G345100 chr6D 87.108 574 68 4 1 570 386069407 386068836 0.000000e+00 645.0
26 TraesCS7B01G345100 chr3D 84.737 190 18 6 1364 1553 584571986 584571808 2.580000e-41 180.0
27 TraesCS7B01G345100 chr4A 79.468 263 32 12 1734 1990 70860682 70860928 2.010000e-37 167.0
28 TraesCS7B01G345100 chr2A 79.457 258 34 10 1739 1990 646848900 646848656 7.230000e-37 165.0
29 TraesCS7B01G345100 chr5A 84.242 165 23 3 2851 3013 309313614 309313451 1.210000e-34 158.0
30 TraesCS7B01G345100 chr1A 83.077 130 18 3 2866 2994 100300153 100300279 7.390000e-22 115.0
31 TraesCS7B01G345100 chr1A 88.462 78 8 1 2851 2928 592772152 592772228 3.460000e-15 93.5
32 TraesCS7B01G345100 chr2D 80.142 141 27 1 2866 3005 142675614 142675754 1.600000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G345100 chr7B 600963186 600966444 3258 True 6019.0 6019 100.0000 1 3259 1 chr7B.!!$R3 3258
1 TraesCS7B01G345100 chr7B 488365184 488365755 571 False 739.0 739 90.0700 1 570 1 chr7B.!!$F3 569
2 TraesCS7B01G345100 chr7B 180486233 180486801 568 False 680.0 680 88.3280 1 570 1 chr7B.!!$F1 569
3 TraesCS7B01G345100 chr7D 553828699 553831003 2304 False 1276.0 2217 88.8875 783 3103 2 chr7D.!!$F4 2320
4 TraesCS7B01G345100 chr7D 4749974 4750549 575 False 719.0 719 89.2920 1 575 1 chr7D.!!$F1 574
5 TraesCS7B01G345100 chr7A 640548826 640551227 2401 True 864.8 2098 89.6820 783 3257 3 chr7A.!!$R2 2474
6 TraesCS7B01G345100 chr1B 646181873 646182446 573 True 760.0 760 90.6250 1 572 1 chr1B.!!$R2 571
7 TraesCS7B01G345100 chr1B 617900732 617901320 588 True 656.0 656 86.9490 2 584 1 chr1B.!!$R1 582
8 TraesCS7B01G345100 chr1B 10950246 10950815 569 False 643.0 643 87.1080 1 570 1 chr1B.!!$F1 569
9 TraesCS7B01G345100 chr2B 388585883 388586452 569 True 699.0 699 88.8310 1 570 1 chr2B.!!$R2 569
10 TraesCS7B01G345100 chr2B 28412640 28413212 572 True 645.0 645 87.1080 2 570 1 chr2B.!!$R1 568
11 TraesCS7B01G345100 chr6D 386068836 386069407 571 True 645.0 645 87.1080 1 570 1 chr6D.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 775 0.0293 GCACGCAGCAGAGTCAAAAA 59.971 50.0 0.0 0.0 44.79 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 2631 0.035439 ACGAATCGACTGGCCCAAAT 60.035 50.0 10.55 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.491342 CTCCTCATCTTCGGAGTCCATA 58.509 50.000 10.49 0.00 41.49 2.74
248 252 3.736483 CCGGCGGGAAATGATCTG 58.264 61.111 20.56 0.00 34.06 2.90
250 254 1.439353 CCGGCGGGAAATGATCTGTG 61.439 60.000 20.56 0.00 34.06 3.66
350 355 3.590466 ATCTGGGTGGGTGGCTTGC 62.590 63.158 0.00 0.00 0.00 4.01
363 368 1.598701 GGCTTGCCTTTTCGCCTGAT 61.599 55.000 4.11 0.00 39.42 2.90
380 385 0.111253 GATAATGTGGCCCCAGGAGG 59.889 60.000 0.00 0.00 0.00 4.30
451 458 4.662961 CTGCGATCGCCGGGCATA 62.663 66.667 35.12 15.33 41.09 3.14
465 473 1.445871 GGCATAAAAACGGACCGAGT 58.554 50.000 23.38 4.77 0.00 4.18
554 565 4.658786 AGGACCTCTTGGGGGCGT 62.659 66.667 0.00 0.00 40.03 5.68
566 577 2.045926 GGGCGTGGCTGAAGATGT 60.046 61.111 0.00 0.00 0.00 3.06
575 586 5.107298 GCGTGGCTGAAGATGTTCTTATATC 60.107 44.000 4.03 0.00 36.73 1.63
576 587 5.985530 CGTGGCTGAAGATGTTCTTATATCA 59.014 40.000 4.03 0.00 36.73 2.15
577 588 6.648310 CGTGGCTGAAGATGTTCTTATATCAT 59.352 38.462 4.03 0.00 36.73 2.45
578 589 7.359849 CGTGGCTGAAGATGTTCTTATATCATG 60.360 40.741 4.03 0.00 36.73 3.07
579 590 6.938596 TGGCTGAAGATGTTCTTATATCATGG 59.061 38.462 4.03 0.00 36.73 3.66
580 591 6.128063 GGCTGAAGATGTTCTTATATCATGGC 60.128 42.308 4.03 0.00 36.73 4.40
581 592 6.654161 GCTGAAGATGTTCTTATATCATGGCT 59.346 38.462 4.03 0.00 36.73 4.75
605 616 2.603075 TTTTCCTGAGGGGTTCATGG 57.397 50.000 0.00 0.00 34.68 3.66
606 617 1.455822 TTTCCTGAGGGGTTCATGGT 58.544 50.000 0.00 0.00 34.68 3.55
607 618 1.455822 TTCCTGAGGGGTTCATGGTT 58.544 50.000 0.00 0.00 34.68 3.67
608 619 1.455822 TCCTGAGGGGTTCATGGTTT 58.544 50.000 0.00 0.00 34.68 3.27
609 620 1.786441 TCCTGAGGGGTTCATGGTTTT 59.214 47.619 0.00 0.00 34.68 2.43
610 621 2.171003 CCTGAGGGGTTCATGGTTTTC 58.829 52.381 0.00 0.00 34.68 2.29
611 622 1.812571 CTGAGGGGTTCATGGTTTTCG 59.187 52.381 0.00 0.00 34.68 3.46
612 623 1.144093 TGAGGGGTTCATGGTTTTCGT 59.856 47.619 0.00 0.00 0.00 3.85
613 624 2.372504 TGAGGGGTTCATGGTTTTCGTA 59.627 45.455 0.00 0.00 0.00 3.43
614 625 3.181442 TGAGGGGTTCATGGTTTTCGTAA 60.181 43.478 0.00 0.00 0.00 3.18
615 626 3.151554 AGGGGTTCATGGTTTTCGTAAC 58.848 45.455 0.00 0.00 0.00 2.50
616 627 2.229543 GGGGTTCATGGTTTTCGTAACC 59.770 50.000 13.10 13.10 40.67 2.85
617 628 2.095617 GGGTTCATGGTTTTCGTAACCG 60.096 50.000 14.43 4.93 43.15 4.44
618 629 2.549329 GGTTCATGGTTTTCGTAACCGT 59.451 45.455 14.43 12.28 43.15 4.83
621 632 1.525941 ATGGTTTTCGTAACCGTGGG 58.474 50.000 13.60 0.00 43.15 4.61
622 633 1.165284 TGGTTTTCGTAACCGTGGGC 61.165 55.000 14.43 0.00 43.15 5.36
623 634 1.165284 GGTTTTCGTAACCGTGGGCA 61.165 55.000 6.48 0.00 35.01 5.36
624 635 0.236449 GTTTTCGTAACCGTGGGCAG 59.764 55.000 0.00 0.00 35.01 4.85
625 636 0.179051 TTTTCGTAACCGTGGGCAGT 60.179 50.000 0.00 0.00 35.01 4.40
626 637 0.881159 TTTCGTAACCGTGGGCAGTG 60.881 55.000 0.00 0.00 35.01 3.66
627 638 3.419759 CGTAACCGTGGGCAGTGC 61.420 66.667 6.55 6.55 0.00 4.40
628 639 3.419759 GTAACCGTGGGCAGTGCG 61.420 66.667 9.45 0.00 0.00 5.34
650 661 1.506262 CGGTTGCCGGAAATGAAGG 59.494 57.895 5.05 0.00 44.15 3.46
651 662 1.890174 GGTTGCCGGAAATGAAGGG 59.110 57.895 5.05 0.00 0.00 3.95
652 663 1.604147 GGTTGCCGGAAATGAAGGGG 61.604 60.000 5.05 0.00 0.00 4.79
653 664 0.610785 GTTGCCGGAAATGAAGGGGA 60.611 55.000 5.05 0.00 0.00 4.81
654 665 0.323360 TTGCCGGAAATGAAGGGGAG 60.323 55.000 5.05 0.00 0.00 4.30
655 666 1.303282 GCCGGAAATGAAGGGGAGT 59.697 57.895 5.05 0.00 0.00 3.85
656 667 1.032114 GCCGGAAATGAAGGGGAGTG 61.032 60.000 5.05 0.00 0.00 3.51
657 668 1.032114 CCGGAAATGAAGGGGAGTGC 61.032 60.000 0.00 0.00 0.00 4.40
658 669 1.032114 CGGAAATGAAGGGGAGTGCC 61.032 60.000 0.00 0.00 0.00 5.01
659 670 0.039618 GGAAATGAAGGGGAGTGCCA 59.960 55.000 1.97 0.00 35.15 4.92
660 671 1.549950 GGAAATGAAGGGGAGTGCCAA 60.550 52.381 1.97 0.00 35.15 4.52
661 672 2.247358 GAAATGAAGGGGAGTGCCAAA 58.753 47.619 1.97 0.00 35.15 3.28
662 673 1.928868 AATGAAGGGGAGTGCCAAAG 58.071 50.000 1.97 0.00 35.15 2.77
663 674 0.613012 ATGAAGGGGAGTGCCAAAGC 60.613 55.000 1.97 0.00 40.48 3.51
664 675 1.979155 GAAGGGGAGTGCCAAAGCC 60.979 63.158 1.97 0.00 38.69 4.35
665 676 3.529835 AAGGGGAGTGCCAAAGCCC 62.530 63.158 1.97 0.00 38.69 5.19
666 677 4.299796 GGGGAGTGCCAAAGCCCA 62.300 66.667 1.97 0.00 42.52 5.36
667 678 2.677875 GGGAGTGCCAAAGCCCAG 60.678 66.667 0.00 0.00 40.39 4.45
668 679 2.116125 GGAGTGCCAAAGCCCAGT 59.884 61.111 0.00 0.00 38.69 4.00
669 680 2.270986 GGAGTGCCAAAGCCCAGTG 61.271 63.158 0.00 0.00 38.69 3.66
670 681 1.529244 GAGTGCCAAAGCCCAGTGT 60.529 57.895 0.00 0.00 38.69 3.55
671 682 1.518903 GAGTGCCAAAGCCCAGTGTC 61.519 60.000 0.00 0.00 38.69 3.67
672 683 2.203480 TGCCAAAGCCCAGTGTCC 60.203 61.111 0.00 0.00 38.69 4.02
673 684 2.203480 GCCAAAGCCCAGTGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
674 685 2.564721 GCCAAAGCCCAGTGTCCAC 61.565 63.158 0.00 0.00 0.00 4.02
675 686 1.903404 CCAAAGCCCAGTGTCCACC 60.903 63.158 0.00 0.00 0.00 4.61
676 687 2.113139 AAAGCCCAGTGTCCACCG 59.887 61.111 0.00 0.00 0.00 4.94
677 688 2.448582 AAAGCCCAGTGTCCACCGA 61.449 57.895 0.00 0.00 0.00 4.69
678 689 2.397413 AAAGCCCAGTGTCCACCGAG 62.397 60.000 0.00 0.00 0.00 4.63
679 690 4.394712 GCCCAGTGTCCACCGAGG 62.395 72.222 0.00 0.00 39.47 4.63
680 691 3.706373 CCCAGTGTCCACCGAGGG 61.706 72.222 5.99 5.99 38.24 4.30
681 692 4.394712 CCAGTGTCCACCGAGGGC 62.395 72.222 0.00 0.00 44.53 5.19
682 693 4.394712 CAGTGTCCACCGAGGGCC 62.395 72.222 0.00 0.00 43.21 5.80
686 697 4.489771 GTCCACCGAGGGCCCATG 62.490 72.222 27.56 16.06 35.31 3.66
689 700 4.738998 CACCGAGGGCCCATGCAA 62.739 66.667 27.56 0.00 40.13 4.08
690 701 3.743017 ACCGAGGGCCCATGCAAT 61.743 61.111 27.56 0.00 40.13 3.56
691 702 2.442643 CCGAGGGCCCATGCAATT 60.443 61.111 27.56 0.00 40.13 2.32
692 703 2.788640 CCGAGGGCCCATGCAATTG 61.789 63.158 27.56 5.52 40.13 2.32
693 704 2.053865 CGAGGGCCCATGCAATTGT 61.054 57.895 27.56 0.00 40.13 2.71
694 705 1.818555 GAGGGCCCATGCAATTGTC 59.181 57.895 27.56 5.15 40.13 3.18
695 706 1.679559 GAGGGCCCATGCAATTGTCC 61.680 60.000 27.56 0.00 40.13 4.02
696 707 1.686800 GGGCCCATGCAATTGTCCT 60.687 57.895 19.95 0.00 40.13 3.85
697 708 1.518774 GGCCCATGCAATTGTCCTG 59.481 57.895 7.40 2.52 40.13 3.86
698 709 1.153509 GCCCATGCAATTGTCCTGC 60.154 57.895 7.40 0.66 40.35 4.85
699 710 1.518774 CCCATGCAATTGTCCTGCC 59.481 57.895 7.40 0.00 39.13 4.85
700 711 0.974010 CCCATGCAATTGTCCTGCCT 60.974 55.000 7.40 0.00 39.13 4.75
701 712 0.174845 CCATGCAATTGTCCTGCCTG 59.825 55.000 7.40 0.00 39.13 4.85
702 713 0.174845 CATGCAATTGTCCTGCCTGG 59.825 55.000 7.40 0.00 39.13 4.45
703 714 1.610554 ATGCAATTGTCCTGCCTGGC 61.611 55.000 12.87 12.87 39.13 4.85
704 715 2.277591 GCAATTGTCCTGCCTGGCA 61.278 57.895 21.96 21.96 36.92 4.92
705 716 1.588082 CAATTGTCCTGCCTGGCAC 59.412 57.895 19.30 9.19 33.79 5.01
706 717 1.153524 AATTGTCCTGCCTGGCACA 59.846 52.632 19.30 12.07 33.79 4.57
707 718 1.181098 AATTGTCCTGCCTGGCACAC 61.181 55.000 19.30 17.28 33.79 3.82
708 719 4.624364 TGTCCTGCCTGGCACACG 62.624 66.667 19.30 8.47 33.79 4.49
711 722 4.015406 CCTGCCTGGCACACGGTA 62.015 66.667 19.30 0.00 33.79 4.02
712 723 2.742372 CTGCCTGGCACACGGTAC 60.742 66.667 19.30 0.00 33.79 3.34
713 724 3.529341 CTGCCTGGCACACGGTACA 62.529 63.158 19.30 0.00 33.79 2.90
714 725 3.047877 GCCTGGCACACGGTACAC 61.048 66.667 15.17 0.00 0.00 2.90
715 726 2.423874 CCTGGCACACGGTACACA 59.576 61.111 0.00 0.00 0.00 3.72
716 727 1.227704 CCTGGCACACGGTACACAA 60.228 57.895 0.00 0.00 0.00 3.33
717 728 0.816018 CCTGGCACACGGTACACAAA 60.816 55.000 0.00 0.00 0.00 2.83
718 729 1.018148 CTGGCACACGGTACACAAAA 58.982 50.000 0.00 0.00 0.00 2.44
719 730 0.733729 TGGCACACGGTACACAAAAC 59.266 50.000 0.00 0.00 0.00 2.43
720 731 1.018910 GGCACACGGTACACAAAACT 58.981 50.000 0.00 0.00 0.00 2.66
721 732 1.402613 GGCACACGGTACACAAAACTT 59.597 47.619 0.00 0.00 0.00 2.66
722 733 2.446282 GCACACGGTACACAAAACTTG 58.554 47.619 0.00 0.00 0.00 3.16
723 734 2.159490 GCACACGGTACACAAAACTTGT 60.159 45.455 0.00 0.00 46.75 3.16
724 735 3.676540 CACACGGTACACAAAACTTGTC 58.323 45.455 0.00 0.00 43.23 3.18
725 736 2.679336 ACACGGTACACAAAACTTGTCC 59.321 45.455 0.00 0.00 43.23 4.02
726 737 1.935199 ACGGTACACAAAACTTGTCCG 59.065 47.619 13.50 13.50 43.23 4.79
727 738 1.262151 CGGTACACAAAACTTGTCCGG 59.738 52.381 0.00 0.00 43.23 5.14
728 739 1.002142 GGTACACAAAACTTGTCCGGC 60.002 52.381 0.00 0.00 43.23 6.13
729 740 1.002142 GTACACAAAACTTGTCCGGCC 60.002 52.381 0.00 0.00 43.23 6.13
730 741 1.362355 CACAAAACTTGTCCGGCCC 59.638 57.895 0.00 0.00 43.23 5.80
731 742 2.190841 ACAAAACTTGTCCGGCCCG 61.191 57.895 0.00 0.00 40.56 6.13
732 743 2.190841 CAAAACTTGTCCGGCCCGT 61.191 57.895 0.85 0.00 0.00 5.28
733 744 0.885596 CAAAACTTGTCCGGCCCGTA 60.886 55.000 0.85 0.00 0.00 4.02
734 745 0.604511 AAAACTTGTCCGGCCCGTAG 60.605 55.000 0.85 0.00 0.00 3.51
747 758 2.481919 CGTAGGTACGCAGTCGCA 59.518 61.111 0.00 0.00 43.93 5.10
748 759 1.866496 CGTAGGTACGCAGTCGCAC 60.866 63.158 0.00 0.00 43.93 5.34
749 760 1.866496 GTAGGTACGCAGTCGCACG 60.866 63.158 0.00 0.00 43.93 5.34
750 761 3.672255 TAGGTACGCAGTCGCACGC 62.672 63.158 0.00 0.00 43.93 5.34
752 763 3.827784 GTACGCAGTCGCACGCAG 61.828 66.667 0.00 0.00 43.93 5.18
757 768 3.476646 CAGTCGCACGCAGCAGAG 61.477 66.667 0.00 0.00 46.13 3.35
758 769 3.983494 AGTCGCACGCAGCAGAGT 61.983 61.111 0.00 0.31 46.13 3.24
759 770 3.474034 GTCGCACGCAGCAGAGTC 61.474 66.667 0.00 0.00 46.13 3.36
760 771 3.977244 TCGCACGCAGCAGAGTCA 61.977 61.111 0.00 0.00 46.13 3.41
761 772 3.037833 CGCACGCAGCAGAGTCAA 61.038 61.111 0.00 0.00 46.13 3.18
762 773 2.597713 CGCACGCAGCAGAGTCAAA 61.598 57.895 0.00 0.00 46.13 2.69
763 774 1.648720 GCACGCAGCAGAGTCAAAA 59.351 52.632 0.00 0.00 44.79 2.44
764 775 0.029300 GCACGCAGCAGAGTCAAAAA 59.971 50.000 0.00 0.00 44.79 1.94
824 835 3.071167 AGTCTTGAACCTGAACCTACCAC 59.929 47.826 0.00 0.00 0.00 4.16
916 931 1.569708 CAACTTGCGTGCAAAACCAT 58.430 45.000 8.80 0.00 35.33 3.55
921 936 0.455802 TGCGTGCAAAACCATATGCG 60.456 50.000 0.00 0.00 45.47 4.73
927 942 2.159585 TGCAAAACCATATGCGTCTTCG 60.160 45.455 0.00 0.00 45.47 3.79
966 981 2.281276 GAACAACCCGAACCGCCT 60.281 61.111 0.00 0.00 0.00 5.52
971 986 3.325201 AACCCGAACCGCCTCCATC 62.325 63.158 0.00 0.00 0.00 3.51
972 987 4.547367 CCCGAACCGCCTCCATCC 62.547 72.222 0.00 0.00 0.00 3.51
1022 1040 4.500116 GGCTCCGACTCCGAGCAC 62.500 72.222 17.71 6.83 39.19 4.40
1053 1071 1.671742 CAAGCTGGTGGGTACGTCT 59.328 57.895 0.00 0.00 0.00 4.18
1110 1128 1.186267 ACCGACCACCTTGTCTCTCC 61.186 60.000 0.00 0.00 32.97 3.71
1131 1149 3.059166 CACCATGGCTTTTGCTTGTAAC 58.941 45.455 13.04 0.00 46.54 2.50
1132 1150 2.288152 ACCATGGCTTTTGCTTGTAACG 60.288 45.455 13.04 0.00 46.54 3.18
1133 1151 2.327568 CATGGCTTTTGCTTGTAACGG 58.672 47.619 0.00 0.00 46.54 4.44
1171 1193 1.926561 TTTCATGGCGAGAGTGATCG 58.073 50.000 0.00 0.00 45.48 3.69
1289 1315 1.306642 ACTACGAGTGCCAGGAGTCG 61.307 60.000 13.90 13.90 43.19 4.18
1430 1456 2.279918 CCCATGTACTACCGCGGC 60.280 66.667 28.58 9.24 0.00 6.53
1487 1513 2.354510 CACGGTGAGACTGAGAGAGATC 59.645 54.545 0.74 0.00 0.00 2.75
1507 1533 3.768878 TCTTCTCTTCTCCTCGGAAACT 58.231 45.455 0.00 0.00 0.00 2.66
1510 1536 3.768878 TCTCTTCTCCTCGGAAACTTCT 58.231 45.455 0.00 0.00 0.00 2.85
1530 1559 5.209818 TCTTTTAGCGACCTTCTCTGAAA 57.790 39.130 0.00 0.00 0.00 2.69
1531 1560 5.794894 TCTTTTAGCGACCTTCTCTGAAAT 58.205 37.500 0.00 0.00 0.00 2.17
1532 1561 6.931838 TCTTTTAGCGACCTTCTCTGAAATA 58.068 36.000 0.00 0.00 0.00 1.40
1583 1612 6.650807 TGTCTGATGATGGAAACTGAAACTAC 59.349 38.462 0.00 0.00 0.00 2.73
1585 1614 7.064016 GTCTGATGATGGAAACTGAAACTACTC 59.936 40.741 0.00 0.00 0.00 2.59
1600 1629 0.683179 TACTCGCTCTGCCCTGCTTA 60.683 55.000 0.00 0.00 0.00 3.09
1603 1632 1.069204 CTCGCTCTGCCCTGCTTAATA 59.931 52.381 0.00 0.00 0.00 0.98
1623 1652 9.245962 CTTAATATTCGACCGTTAATCTGTTCT 57.754 33.333 0.00 0.00 0.00 3.01
1629 1660 7.285783 TCGACCGTTAATCTGTTCTAATTTG 57.714 36.000 0.00 0.00 0.00 2.32
1630 1661 6.869913 TCGACCGTTAATCTGTTCTAATTTGT 59.130 34.615 0.00 0.00 0.00 2.83
1656 1687 0.804933 GGGCGTCAGGATTCGTACAC 60.805 60.000 0.00 0.00 0.00 2.90
1699 1730 4.270834 ACGAGCTTCAGAGACAAGGTATA 58.729 43.478 0.00 0.00 31.71 1.47
1705 1736 9.238368 GAGCTTCAGAGACAAGGTATAGTATAT 57.762 37.037 0.00 0.00 31.71 0.86
1753 1790 2.279741 GTCGCTGGAACTCAATATGCA 58.720 47.619 0.00 0.00 0.00 3.96
1777 1814 2.548057 TCAGTGCTTAGGTTTTTCTGCG 59.452 45.455 0.00 0.00 0.00 5.18
1782 1819 2.732282 GCTTAGGTTTTTCTGCGCATCC 60.732 50.000 12.24 7.14 0.00 3.51
1784 1821 1.327303 AGGTTTTTCTGCGCATCCAA 58.673 45.000 12.24 0.71 0.00 3.53
1785 1822 1.270550 AGGTTTTTCTGCGCATCCAAG 59.729 47.619 12.24 0.00 0.00 3.61
1866 1907 1.539827 GGAATGTTGGCACACAGGTAC 59.460 52.381 8.15 0.00 39.29 3.34
1877 1923 4.188462 GCACACAGGTACATATACTTGCA 58.812 43.478 0.00 0.00 41.06 4.08
1937 1986 1.537202 GCATCTGTCAGTCAAACCCAC 59.463 52.381 0.00 0.00 0.00 4.61
1940 1989 1.774254 TCTGTCAGTCAAACCCACCAT 59.226 47.619 0.00 0.00 0.00 3.55
1942 1991 1.202879 TGTCAGTCAAACCCACCATCC 60.203 52.381 0.00 0.00 0.00 3.51
1943 1992 0.404040 TCAGTCAAACCCACCATCCC 59.596 55.000 0.00 0.00 0.00 3.85
1969 2019 5.469760 TCTGTTTTTCTCTGAATGAATGCGA 59.530 36.000 0.00 0.00 0.00 5.10
1970 2020 5.692814 TGTTTTTCTCTGAATGAATGCGAG 58.307 37.500 0.00 0.00 0.00 5.03
1971 2021 4.346734 TTTTCTCTGAATGAATGCGAGC 57.653 40.909 0.00 0.00 0.00 5.03
1972 2022 1.564207 TCTCTGAATGAATGCGAGCG 58.436 50.000 0.00 0.00 0.00 5.03
1973 2023 1.134946 TCTCTGAATGAATGCGAGCGA 59.865 47.619 0.00 0.00 0.00 4.93
2031 2081 1.874019 CTTCATGGAGACGTCGGCG 60.874 63.158 8.42 8.42 44.93 6.46
2105 2155 5.140747 TGAAACTCTACCTGCTTCTTCTC 57.859 43.478 0.00 0.00 0.00 2.87
2122 2176 1.876799 TCTCGATCGGCTTCATCTCTC 59.123 52.381 16.41 0.00 0.00 3.20
2126 2180 0.749649 ATCGGCTTCATCTCTCGCTT 59.250 50.000 0.00 0.00 0.00 4.68
2129 2183 1.012841 GGCTTCATCTCTCGCTTTGG 58.987 55.000 0.00 0.00 0.00 3.28
2130 2184 1.677217 GGCTTCATCTCTCGCTTTGGT 60.677 52.381 0.00 0.00 0.00 3.67
2131 2185 2.079925 GCTTCATCTCTCGCTTTGGTT 58.920 47.619 0.00 0.00 0.00 3.67
2193 2274 4.337177 TGCGGCCGAACCATCCAA 62.337 61.111 33.48 0.00 39.03 3.53
2213 2294 2.187946 GGGATGGTCCTGCACGAG 59.812 66.667 0.00 0.00 36.57 4.18
2308 2392 0.030908 CGGCGATAGGAGAAGGTGTC 59.969 60.000 0.00 0.00 0.00 3.67
2360 2444 1.069771 GCCGCTCTCTCTGTACGTATC 60.070 57.143 0.00 0.00 0.00 2.24
2383 2468 2.957006 AGGACTCGACTGTACTTGTTGT 59.043 45.455 0.00 0.00 0.00 3.32
2397 2483 5.581126 ACTTGTTGTGATGTGTTGTGAAT 57.419 34.783 0.00 0.00 0.00 2.57
2411 2497 4.462132 TGTTGTGAATTGGTGATGGTATGG 59.538 41.667 0.00 0.00 0.00 2.74
2424 2510 6.237901 GTGATGGTATGGCATCTGGTTTATA 58.762 40.000 1.65 0.00 0.00 0.98
2425 2511 6.714810 GTGATGGTATGGCATCTGGTTTATAA 59.285 38.462 1.65 0.00 0.00 0.98
2426 2512 6.942005 TGATGGTATGGCATCTGGTTTATAAG 59.058 38.462 1.65 0.00 0.00 1.73
2427 2513 5.070001 TGGTATGGCATCTGGTTTATAAGC 58.930 41.667 1.65 0.00 0.00 3.09
2428 2514 4.459337 GGTATGGCATCTGGTTTATAAGCC 59.541 45.833 11.22 11.22 40.93 4.35
2429 2515 3.951563 TGGCATCTGGTTTATAAGCCT 57.048 42.857 18.01 0.00 41.12 4.58
2430 2516 4.249638 TGGCATCTGGTTTATAAGCCTT 57.750 40.909 18.01 2.31 41.12 4.35
2431 2517 4.609301 TGGCATCTGGTTTATAAGCCTTT 58.391 39.130 18.01 1.99 41.12 3.11
2432 2518 5.761205 TGGCATCTGGTTTATAAGCCTTTA 58.239 37.500 18.01 5.37 41.12 1.85
2433 2519 6.191315 TGGCATCTGGTTTATAAGCCTTTAA 58.809 36.000 18.01 3.21 41.12 1.52
2461 2547 2.903547 CGTTTTGGTGGTCCTGGCG 61.904 63.158 0.00 0.00 34.23 5.69
2518 2605 5.779241 TCTCTATTTCAAATGGGACTGGT 57.221 39.130 0.00 0.00 0.00 4.00
2530 2617 1.558294 GGGACTGGTTAGGGGTAAGTG 59.442 57.143 0.00 0.00 0.00 3.16
2540 2627 3.503800 AGGGGTAAGTGGACTGAAAAC 57.496 47.619 0.00 0.00 0.00 2.43
2544 2631 4.457466 GGGTAAGTGGACTGAAAACTCAA 58.543 43.478 0.00 0.00 0.00 3.02
2546 2633 5.535030 GGGTAAGTGGACTGAAAACTCAATT 59.465 40.000 0.00 0.00 0.00 2.32
2564 2651 0.672401 TTTGGGCCAGTCGATTCGTC 60.672 55.000 6.23 0.05 0.00 4.20
2571 2658 1.134367 CCAGTCGATTCGTCTAAGCCA 59.866 52.381 5.89 0.00 0.00 4.75
2573 2660 3.448686 CAGTCGATTCGTCTAAGCCATT 58.551 45.455 5.89 0.00 0.00 3.16
2576 2663 2.429250 TCGATTCGTCTAAGCCATTGGA 59.571 45.455 6.95 0.00 0.00 3.53
2577 2664 3.069586 TCGATTCGTCTAAGCCATTGGAT 59.930 43.478 6.95 0.00 0.00 3.41
2578 2665 3.809832 CGATTCGTCTAAGCCATTGGATT 59.190 43.478 11.51 11.51 34.82 3.01
2580 2667 5.465390 CGATTCGTCTAAGCCATTGGATTTA 59.535 40.000 12.09 5.81 31.96 1.40
2581 2668 6.018262 CGATTCGTCTAAGCCATTGGATTTAA 60.018 38.462 12.09 0.00 31.96 1.52
2582 2669 7.466725 CGATTCGTCTAAGCCATTGGATTTAAA 60.467 37.037 12.09 0.69 31.96 1.52
2583 2670 7.455641 TTCGTCTAAGCCATTGGATTTAAAA 57.544 32.000 12.09 0.00 31.96 1.52
2584 2671 6.848451 TCGTCTAAGCCATTGGATTTAAAAC 58.152 36.000 12.09 4.75 31.96 2.43
2586 2673 6.402766 CGTCTAAGCCATTGGATTTAAAACGA 60.403 38.462 12.09 0.00 31.96 3.85
2588 2675 4.110036 AGCCATTGGATTTAAAACGAGC 57.890 40.909 6.95 0.00 0.00 5.03
2589 2676 2.851824 GCCATTGGATTTAAAACGAGCG 59.148 45.455 6.95 0.00 0.00 5.03
2591 2678 3.119637 CCATTGGATTTAAAACGAGCGGT 60.120 43.478 0.00 0.00 0.00 5.68
2593 2680 2.768698 TGGATTTAAAACGAGCGGTCA 58.231 42.857 15.89 0.00 0.00 4.02
2595 2682 2.997986 GGATTTAAAACGAGCGGTCAGA 59.002 45.455 15.89 0.00 0.00 3.27
2596 2683 3.621715 GGATTTAAAACGAGCGGTCAGAT 59.378 43.478 15.89 0.00 0.00 2.90
2597 2684 4.094442 GGATTTAAAACGAGCGGTCAGATT 59.906 41.667 15.89 8.06 0.00 2.40
2598 2685 4.657075 TTTAAAACGAGCGGTCAGATTC 57.343 40.909 15.89 0.00 0.00 2.52
2599 2686 1.439679 AAAACGAGCGGTCAGATTCC 58.560 50.000 15.89 0.00 0.00 3.01
2601 2688 0.608640 AACGAGCGGTCAGATTCCTT 59.391 50.000 15.89 0.00 0.00 3.36
2602 2689 0.173708 ACGAGCGGTCAGATTCCTTC 59.826 55.000 15.89 0.00 0.00 3.46
2603 2690 0.457851 CGAGCGGTCAGATTCCTTCT 59.542 55.000 15.89 0.00 33.90 2.85
2604 2691 1.134965 CGAGCGGTCAGATTCCTTCTT 60.135 52.381 15.89 0.00 29.93 2.52
2605 2692 2.545731 GAGCGGTCAGATTCCTTCTTC 58.454 52.381 10.30 0.00 29.93 2.87
2606 2693 1.902508 AGCGGTCAGATTCCTTCTTCA 59.097 47.619 0.00 0.00 29.93 3.02
2608 2695 2.416893 GCGGTCAGATTCCTTCTTCAAC 59.583 50.000 0.00 0.00 29.93 3.18
2609 2696 3.003480 CGGTCAGATTCCTTCTTCAACC 58.997 50.000 0.00 0.00 29.93 3.77
2610 2697 3.307059 CGGTCAGATTCCTTCTTCAACCT 60.307 47.826 0.00 0.00 31.25 3.50
2611 2698 4.257731 GGTCAGATTCCTTCTTCAACCTC 58.742 47.826 0.00 0.00 30.98 3.85
2612 2699 4.257731 GTCAGATTCCTTCTTCAACCTCC 58.742 47.826 0.00 0.00 29.93 4.30
2613 2700 3.909995 TCAGATTCCTTCTTCAACCTCCA 59.090 43.478 0.00 0.00 29.93 3.86
2615 2702 2.568623 TTCCTTCTTCAACCTCCAGC 57.431 50.000 0.00 0.00 0.00 4.85
2616 2703 0.321671 TCCTTCTTCAACCTCCAGCG 59.678 55.000 0.00 0.00 0.00 5.18
2618 2705 1.301677 CTTCTTCAACCTCCAGCGCC 61.302 60.000 2.29 0.00 0.00 6.53
2619 2706 2.747855 CTTCAACCTCCAGCGCCC 60.748 66.667 2.29 0.00 0.00 6.13
2620 2707 4.344865 TTCAACCTCCAGCGCCCC 62.345 66.667 2.29 0.00 0.00 5.80
2626 2713 4.351054 CTCCAGCGCCCCACCTTT 62.351 66.667 2.29 0.00 0.00 3.11
2628 2715 4.974721 CCAGCGCCCCACCTTTGT 62.975 66.667 2.29 0.00 0.00 2.83
2629 2716 2.912025 CAGCGCCCCACCTTTGTT 60.912 61.111 2.29 0.00 0.00 2.83
2630 2717 2.123468 AGCGCCCCACCTTTGTTT 60.123 55.556 2.29 0.00 0.00 2.83
2631 2718 2.200337 AGCGCCCCACCTTTGTTTC 61.200 57.895 2.29 0.00 0.00 2.78
2632 2719 3.047735 CGCCCCACCTTTGTTTCC 58.952 61.111 0.00 0.00 0.00 3.13
2633 2720 1.530655 CGCCCCACCTTTGTTTCCT 60.531 57.895 0.00 0.00 0.00 3.36
2634 2721 1.112916 CGCCCCACCTTTGTTTCCTT 61.113 55.000 0.00 0.00 0.00 3.36
2636 2723 2.536066 GCCCCACCTTTGTTTCCTTAT 58.464 47.619 0.00 0.00 0.00 1.73
2637 2724 2.496070 GCCCCACCTTTGTTTCCTTATC 59.504 50.000 0.00 0.00 0.00 1.75
2638 2725 2.752903 CCCCACCTTTGTTTCCTTATCG 59.247 50.000 0.00 0.00 0.00 2.92
2639 2726 3.560453 CCCCACCTTTGTTTCCTTATCGA 60.560 47.826 0.00 0.00 0.00 3.59
2640 2727 3.439129 CCCACCTTTGTTTCCTTATCGAC 59.561 47.826 0.00 0.00 0.00 4.20
2641 2728 3.439129 CCACCTTTGTTTCCTTATCGACC 59.561 47.826 0.00 0.00 0.00 4.79
2642 2729 3.439129 CACCTTTGTTTCCTTATCGACCC 59.561 47.826 0.00 0.00 0.00 4.46
2643 2730 2.676342 CCTTTGTTTCCTTATCGACCCG 59.324 50.000 0.00 0.00 0.00 5.28
2645 2732 0.108041 TGTTTCCTTATCGACCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
2646 2733 0.812811 GTTTCCTTATCGACCCGCCC 60.813 60.000 0.00 0.00 0.00 6.13
2647 2734 1.974973 TTTCCTTATCGACCCGCCCC 61.975 60.000 0.00 0.00 0.00 5.80
2648 2735 3.158648 CCTTATCGACCCGCCCCA 61.159 66.667 0.00 0.00 0.00 4.96
2649 2736 2.108362 CTTATCGACCCGCCCCAC 59.892 66.667 0.00 0.00 0.00 4.61
2650 2737 3.785189 CTTATCGACCCGCCCCACG 62.785 68.421 0.00 0.00 43.15 4.94
2652 2739 3.712771 TATCGACCCGCCCCACGTA 62.713 63.158 0.00 0.00 41.42 3.57
2658 2745 4.540735 CCGCCCCACGTACCATCC 62.541 72.222 0.00 0.00 41.42 3.51
2661 2748 4.540735 CCCCACGTACCATCCGCC 62.541 72.222 0.00 0.00 0.00 6.13
2662 2749 3.776781 CCCACGTACCATCCGCCA 61.777 66.667 0.00 0.00 0.00 5.69
2663 2750 2.266372 CCACGTACCATCCGCCAA 59.734 61.111 0.00 0.00 0.00 4.52
2664 2751 1.376166 CCACGTACCATCCGCCAAA 60.376 57.895 0.00 0.00 0.00 3.28
2665 2752 1.641123 CCACGTACCATCCGCCAAAC 61.641 60.000 0.00 0.00 0.00 2.93
2666 2753 1.376295 ACGTACCATCCGCCAAACC 60.376 57.895 0.00 0.00 0.00 3.27
2667 2754 2.457778 CGTACCATCCGCCAAACCG 61.458 63.158 0.00 0.00 0.00 4.44
2677 2764 2.676121 CCAAACCGGCAGCCATCA 60.676 61.111 13.30 0.00 0.00 3.07
2678 2765 2.568090 CAAACCGGCAGCCATCAC 59.432 61.111 13.30 0.00 0.00 3.06
2679 2766 2.676471 AAACCGGCAGCCATCACC 60.676 61.111 13.30 0.00 0.00 4.02
2779 2876 4.222810 GGCCATCCCTTTAACTTGAACAAT 59.777 41.667 0.00 0.00 0.00 2.71
2831 2928 2.096466 CGCACGCACACAAGATAGAAAA 60.096 45.455 0.00 0.00 0.00 2.29
2833 2930 3.810373 CACGCACACAAGATAGAAAACC 58.190 45.455 0.00 0.00 0.00 3.27
2837 2934 3.670625 CACACAAGATAGAAAACCGGGA 58.329 45.455 6.32 0.00 0.00 5.14
2838 2935 3.435671 CACACAAGATAGAAAACCGGGAC 59.564 47.826 6.32 0.00 0.00 4.46
2839 2936 3.071892 ACACAAGATAGAAAACCGGGACA 59.928 43.478 6.32 0.00 0.00 4.02
2849 2946 0.765519 AACCGGGACACCTACCACTT 60.766 55.000 6.32 0.00 33.28 3.16
2878 2975 4.394712 CCGAGGTCACCTGCCACC 62.395 72.222 0.00 0.00 31.76 4.61
2906 3003 3.474570 CCCAGAGGGCTTCTCCGG 61.475 72.222 0.00 0.00 43.44 5.14
2907 3004 4.168291 CCAGAGGGCTTCTCCGGC 62.168 72.222 0.00 0.00 43.44 6.13
2908 3005 4.521062 CAGAGGGCTTCTCCGGCG 62.521 72.222 0.00 0.00 43.44 6.46
2909 3006 4.761058 AGAGGGCTTCTCCGGCGA 62.761 66.667 9.30 0.00 43.44 5.54
2910 3007 4.214327 GAGGGCTTCTCCGGCGAG 62.214 72.222 9.30 4.01 36.52 5.03
2963 3060 2.435422 TGCTTCCTTCATGCGAAATCA 58.565 42.857 0.00 0.00 0.00 2.57
2967 3064 4.656041 CTTCCTTCATGCGAAATCAACTC 58.344 43.478 0.00 0.00 0.00 3.01
2972 3069 2.667969 TCATGCGAAATCAACTCACTCG 59.332 45.455 0.00 0.00 0.00 4.18
2979 3076 6.092122 TGCGAAATCAACTCACTCGAATATTT 59.908 34.615 0.00 0.00 0.00 1.40
3091 3190 2.354510 TCAAACCAGACAAGTTTCGCTG 59.645 45.455 0.00 0.00 35.28 5.18
3141 3240 7.925622 ACCACATATCCATCATATCTGTTCAT 58.074 34.615 0.00 0.00 0.00 2.57
3171 3270 5.795972 TGGTGACATTTTATCGAACACCTA 58.204 37.500 0.00 0.00 44.19 3.08
3174 3273 6.238508 GTGACATTTTATCGAACACCTAACG 58.761 40.000 0.00 0.00 0.00 3.18
3175 3274 5.163933 TGACATTTTATCGAACACCTAACGC 60.164 40.000 0.00 0.00 0.00 4.84
3184 3283 3.931247 ACCTAACGCGCCACACCA 61.931 61.111 5.73 0.00 0.00 4.17
3191 3290 2.594592 GCGCCACACCAAGAACCT 60.595 61.111 0.00 0.00 0.00 3.50
3192 3291 2.617274 GCGCCACACCAAGAACCTC 61.617 63.158 0.00 0.00 0.00 3.85
3194 3293 0.817634 CGCCACACCAAGAACCTCAA 60.818 55.000 0.00 0.00 0.00 3.02
3195 3294 0.954452 GCCACACCAAGAACCTCAAG 59.046 55.000 0.00 0.00 0.00 3.02
3196 3295 0.954452 CCACACCAAGAACCTCAAGC 59.046 55.000 0.00 0.00 0.00 4.01
3197 3296 1.477558 CCACACCAAGAACCTCAAGCT 60.478 52.381 0.00 0.00 0.00 3.74
3198 3297 2.224523 CCACACCAAGAACCTCAAGCTA 60.225 50.000 0.00 0.00 0.00 3.32
3203 3312 2.941720 CCAAGAACCTCAAGCTAGATGC 59.058 50.000 0.00 0.00 43.29 3.91
3228 3337 4.537965 GACGAGCTCGAATTTATGCTAGA 58.462 43.478 40.58 0.00 43.02 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 325 0.616111 ACCCAGATTCGCCTCTGACT 60.616 55.000 13.65 0.00 44.48 3.41
350 355 2.223572 GCCACATTATCAGGCGAAAAGG 60.224 50.000 0.00 0.00 38.86 3.11
363 368 3.754043 CCTCCTGGGGCCACATTA 58.246 61.111 8.98 0.00 0.00 1.90
380 385 1.006220 CCGGTGCAAGGAAAAAGCC 60.006 57.895 3.50 0.00 0.00 4.35
449 456 2.000429 CCGACTCGGTCCGTTTTTAT 58.000 50.000 11.88 0.00 42.73 1.40
450 457 3.495124 CCGACTCGGTCCGTTTTTA 57.505 52.632 11.88 0.00 42.73 1.52
451 458 4.348857 CCGACTCGGTCCGTTTTT 57.651 55.556 11.88 0.00 42.73 1.94
554 565 6.938596 CCATGATATAAGAACATCTTCAGCCA 59.061 38.462 0.00 0.00 37.89 4.75
585 596 2.178984 ACCATGAACCCCTCAGGAAAAA 59.821 45.455 0.00 0.00 38.11 1.94
586 597 1.786441 ACCATGAACCCCTCAGGAAAA 59.214 47.619 0.00 0.00 38.11 2.29
587 598 1.455822 ACCATGAACCCCTCAGGAAA 58.544 50.000 0.00 0.00 38.11 3.13
588 599 1.455822 AACCATGAACCCCTCAGGAA 58.544 50.000 0.00 0.00 38.11 3.36
589 600 1.455822 AAACCATGAACCCCTCAGGA 58.544 50.000 0.00 0.00 38.11 3.86
590 601 2.171003 GAAAACCATGAACCCCTCAGG 58.829 52.381 0.00 0.00 37.52 3.86
591 602 1.812571 CGAAAACCATGAACCCCTCAG 59.187 52.381 0.00 0.00 37.52 3.35
592 603 1.144093 ACGAAAACCATGAACCCCTCA 59.856 47.619 0.00 0.00 38.81 3.86
593 604 1.905637 ACGAAAACCATGAACCCCTC 58.094 50.000 0.00 0.00 0.00 4.30
594 605 3.151554 GTTACGAAAACCATGAACCCCT 58.848 45.455 0.00 0.00 0.00 4.79
595 606 2.229543 GGTTACGAAAACCATGAACCCC 59.770 50.000 16.25 0.00 40.03 4.95
596 607 2.095617 CGGTTACGAAAACCATGAACCC 60.096 50.000 19.51 0.00 44.60 4.11
597 608 2.549329 ACGGTTACGAAAACCATGAACC 59.451 45.455 19.51 0.00 44.60 3.62
598 609 3.547601 CACGGTTACGAAAACCATGAAC 58.452 45.455 19.51 0.00 44.60 3.18
599 610 2.548904 CCACGGTTACGAAAACCATGAA 59.451 45.455 17.72 0.00 44.60 2.57
600 611 2.144730 CCACGGTTACGAAAACCATGA 58.855 47.619 17.72 0.00 44.60 3.07
601 612 1.198178 CCCACGGTTACGAAAACCATG 59.802 52.381 19.51 15.73 44.60 3.66
602 613 1.525941 CCCACGGTTACGAAAACCAT 58.474 50.000 19.51 6.29 44.60 3.55
603 614 1.165284 GCCCACGGTTACGAAAACCA 61.165 55.000 19.51 0.00 44.60 3.67
604 615 1.165284 TGCCCACGGTTACGAAAACC 61.165 55.000 12.56 12.56 44.60 3.27
605 616 0.236449 CTGCCCACGGTTACGAAAAC 59.764 55.000 0.00 0.00 44.60 2.43
606 617 0.179051 ACTGCCCACGGTTACGAAAA 60.179 50.000 0.00 0.00 44.60 2.29
607 618 0.881159 CACTGCCCACGGTTACGAAA 60.881 55.000 0.00 0.00 44.60 3.46
608 619 1.301087 CACTGCCCACGGTTACGAA 60.301 57.895 0.00 0.00 44.60 3.85
609 620 2.340809 CACTGCCCACGGTTACGA 59.659 61.111 0.00 0.00 44.60 3.43
611 622 3.419759 CGCACTGCCCACGGTTAC 61.420 66.667 0.00 0.00 31.05 2.50
612 623 4.690719 CCGCACTGCCCACGGTTA 62.691 66.667 0.00 0.00 42.01 2.85
630 641 0.109781 CTTCATTTCCGGCAACCGTG 60.110 55.000 0.00 0.00 46.80 4.94
631 642 1.241315 CCTTCATTTCCGGCAACCGT 61.241 55.000 0.00 0.00 46.80 4.83
633 644 1.604147 CCCCTTCATTTCCGGCAACC 61.604 60.000 0.00 0.00 0.00 3.77
634 645 0.610785 TCCCCTTCATTTCCGGCAAC 60.611 55.000 0.00 0.00 0.00 4.17
635 646 0.323360 CTCCCCTTCATTTCCGGCAA 60.323 55.000 0.00 0.00 0.00 4.52
636 647 1.302949 CTCCCCTTCATTTCCGGCA 59.697 57.895 0.00 0.00 0.00 5.69
637 648 1.032114 CACTCCCCTTCATTTCCGGC 61.032 60.000 0.00 0.00 0.00 6.13
638 649 1.032114 GCACTCCCCTTCATTTCCGG 61.032 60.000 0.00 0.00 0.00 5.14
639 650 1.032114 GGCACTCCCCTTCATTTCCG 61.032 60.000 0.00 0.00 0.00 4.30
640 651 0.039618 TGGCACTCCCCTTCATTTCC 59.960 55.000 0.00 0.00 0.00 3.13
641 652 1.923356 TTGGCACTCCCCTTCATTTC 58.077 50.000 0.00 0.00 0.00 2.17
642 653 2.250924 CTTTGGCACTCCCCTTCATTT 58.749 47.619 0.00 0.00 0.00 2.32
643 654 1.928868 CTTTGGCACTCCCCTTCATT 58.071 50.000 0.00 0.00 0.00 2.57
644 655 0.613012 GCTTTGGCACTCCCCTTCAT 60.613 55.000 0.00 0.00 38.54 2.57
645 656 1.228552 GCTTTGGCACTCCCCTTCA 60.229 57.895 0.00 0.00 38.54 3.02
646 657 1.979155 GGCTTTGGCACTCCCCTTC 60.979 63.158 0.00 0.00 40.87 3.46
647 658 2.118294 GGCTTTGGCACTCCCCTT 59.882 61.111 0.00 0.00 40.87 3.95
648 659 3.984732 GGGCTTTGGCACTCCCCT 61.985 66.667 7.98 0.00 39.12 4.79
649 660 4.299796 TGGGCTTTGGCACTCCCC 62.300 66.667 13.44 10.93 43.40 4.81
650 661 2.677875 CTGGGCTTTGGCACTCCC 60.678 66.667 10.13 10.13 43.40 4.30
651 662 2.116125 ACTGGGCTTTGGCACTCC 59.884 61.111 0.00 0.00 43.40 3.85
652 663 1.518903 GACACTGGGCTTTGGCACTC 61.519 60.000 0.00 0.00 43.40 3.51
653 664 1.529244 GACACTGGGCTTTGGCACT 60.529 57.895 0.00 0.00 43.40 4.40
654 665 2.564721 GGACACTGGGCTTTGGCAC 61.565 63.158 0.00 0.00 43.28 5.01
655 666 2.203480 GGACACTGGGCTTTGGCA 60.203 61.111 0.00 0.00 40.87 4.92
656 667 2.203480 TGGACACTGGGCTTTGGC 60.203 61.111 0.00 0.00 37.82 4.52
657 668 1.903404 GGTGGACACTGGGCTTTGG 60.903 63.158 2.13 0.00 0.00 3.28
658 669 2.260869 CGGTGGACACTGGGCTTTG 61.261 63.158 3.34 0.00 34.12 2.77
659 670 2.113139 CGGTGGACACTGGGCTTT 59.887 61.111 3.34 0.00 34.12 3.51
660 671 2.847234 TCGGTGGACACTGGGCTT 60.847 61.111 11.08 0.00 38.23 4.35
661 672 3.314331 CTCGGTGGACACTGGGCT 61.314 66.667 11.08 0.00 38.23 5.19
662 673 4.394712 CCTCGGTGGACACTGGGC 62.395 72.222 11.08 0.00 36.85 5.36
663 674 3.706373 CCCTCGGTGGACACTGGG 61.706 72.222 11.08 7.77 37.92 4.45
664 675 4.394712 GCCCTCGGTGGACACTGG 62.395 72.222 11.08 6.98 38.23 4.00
665 676 4.394712 GGCCCTCGGTGGACACTG 62.395 72.222 4.91 4.91 38.35 3.66
669 680 4.489771 CATGGGCCCTCGGTGGAC 62.490 72.222 25.70 0.00 38.35 4.02
672 683 4.738998 TTGCATGGGCCCTCGGTG 62.739 66.667 25.70 17.03 40.13 4.94
673 684 3.301222 AATTGCATGGGCCCTCGGT 62.301 57.895 25.70 3.21 40.13 4.69
674 685 2.442643 AATTGCATGGGCCCTCGG 60.443 61.111 25.70 13.53 40.13 4.63
675 686 2.008268 GACAATTGCATGGGCCCTCG 62.008 60.000 25.70 15.32 40.13 4.63
676 687 1.679559 GGACAATTGCATGGGCCCTC 61.680 60.000 25.70 12.82 40.13 4.30
677 688 1.686800 GGACAATTGCATGGGCCCT 60.687 57.895 25.70 5.48 40.13 5.19
678 689 1.686800 AGGACAATTGCATGGGCCC 60.687 57.895 17.59 17.59 40.13 5.80
679 690 1.518774 CAGGACAATTGCATGGGCC 59.481 57.895 5.05 0.00 40.13 5.80
680 691 1.153509 GCAGGACAATTGCATGGGC 60.154 57.895 5.05 0.00 41.17 5.36
681 692 0.974010 AGGCAGGACAATTGCATGGG 60.974 55.000 5.05 0.00 43.28 4.00
682 693 0.174845 CAGGCAGGACAATTGCATGG 59.825 55.000 5.05 0.00 46.30 3.66
683 694 3.733236 CAGGCAGGACAATTGCATG 57.267 52.632 5.05 7.68 45.19 4.06
684 695 1.610554 GCCAGGCAGGACAATTGCAT 61.611 55.000 6.55 0.00 43.28 3.96
685 696 2.277591 GCCAGGCAGGACAATTGCA 61.278 57.895 6.55 0.00 43.28 4.08
686 697 2.277591 TGCCAGGCAGGACAATTGC 61.278 57.895 11.22 0.00 41.22 3.56
687 698 1.180456 TGTGCCAGGCAGGACAATTG 61.180 55.000 16.83 3.24 40.08 2.32
688 699 1.153524 TGTGCCAGGCAGGACAATT 59.846 52.632 16.83 0.00 40.08 2.32
689 700 1.604593 GTGTGCCAGGCAGGACAAT 60.605 57.895 16.83 0.00 40.08 2.71
690 701 2.203337 GTGTGCCAGGCAGGACAA 60.203 61.111 16.83 0.00 40.08 3.18
691 702 4.624364 CGTGTGCCAGGCAGGACA 62.624 66.667 16.83 6.77 40.08 4.02
694 705 4.015406 TACCGTGTGCCAGGCAGG 62.015 66.667 16.83 15.93 40.08 4.85
695 706 2.742372 GTACCGTGTGCCAGGCAG 60.742 66.667 16.83 5.47 40.08 4.85
696 707 3.551407 TGTACCGTGTGCCAGGCA 61.551 61.111 11.22 11.22 35.60 4.75
697 708 3.047877 GTGTACCGTGTGCCAGGC 61.048 66.667 3.66 3.66 0.00 4.85
698 709 0.816018 TTTGTGTACCGTGTGCCAGG 60.816 55.000 0.00 0.00 0.00 4.45
699 710 1.018148 TTTTGTGTACCGTGTGCCAG 58.982 50.000 0.00 0.00 0.00 4.85
700 711 0.733729 GTTTTGTGTACCGTGTGCCA 59.266 50.000 0.00 0.00 0.00 4.92
701 712 1.018910 AGTTTTGTGTACCGTGTGCC 58.981 50.000 0.00 0.00 0.00 5.01
702 713 2.159490 ACAAGTTTTGTGTACCGTGTGC 60.159 45.455 0.00 0.00 43.48 4.57
703 714 3.486209 GGACAAGTTTTGTGTACCGTGTG 60.486 47.826 0.00 0.00 45.52 3.82
704 715 2.679336 GGACAAGTTTTGTGTACCGTGT 59.321 45.455 0.00 0.00 45.52 4.49
705 716 2.285950 CGGACAAGTTTTGTGTACCGTG 60.286 50.000 10.59 0.00 45.52 4.94
706 717 1.935199 CGGACAAGTTTTGTGTACCGT 59.065 47.619 10.59 0.00 45.52 4.83
707 718 1.262151 CCGGACAAGTTTTGTGTACCG 59.738 52.381 0.00 11.42 45.52 4.02
708 719 1.002142 GCCGGACAAGTTTTGTGTACC 60.002 52.381 5.05 0.00 45.52 3.34
709 720 1.002142 GGCCGGACAAGTTTTGTGTAC 60.002 52.381 5.05 0.00 45.52 2.90
710 721 1.310904 GGCCGGACAAGTTTTGTGTA 58.689 50.000 5.05 0.00 45.52 2.90
711 722 1.388837 GGGCCGGACAAGTTTTGTGT 61.389 55.000 11.00 0.00 45.52 3.72
712 723 1.362355 GGGCCGGACAAGTTTTGTG 59.638 57.895 11.00 0.00 45.52 3.33
714 725 0.885596 TACGGGCCGGACAAGTTTTG 60.886 55.000 31.78 0.00 0.00 2.44
715 726 0.604511 CTACGGGCCGGACAAGTTTT 60.605 55.000 31.78 8.11 0.00 2.43
716 727 1.004200 CTACGGGCCGGACAAGTTT 60.004 57.895 31.78 8.94 0.00 2.66
717 728 2.660802 CTACGGGCCGGACAAGTT 59.339 61.111 31.78 9.78 0.00 2.66
718 729 2.786512 TACCTACGGGCCGGACAAGT 62.787 60.000 31.78 19.03 35.63 3.16
719 730 2.053865 TACCTACGGGCCGGACAAG 61.054 63.158 31.78 20.07 35.63 3.16
720 731 2.037049 TACCTACGGGCCGGACAA 59.963 61.111 31.78 11.55 35.63 3.18
721 732 2.755469 GTACCTACGGGCCGGACA 60.755 66.667 31.78 13.90 35.63 4.02
722 733 3.892581 CGTACCTACGGGCCGGAC 61.893 72.222 31.78 17.48 45.30 4.79
731 742 4.068302 GTGCGACTGCGTACCTAC 57.932 61.111 0.00 0.00 45.59 3.18
740 751 3.476646 CTCTGCTGCGTGCGACTG 61.477 66.667 0.00 0.00 46.63 3.51
741 752 3.905705 GACTCTGCTGCGTGCGACT 62.906 63.158 0.00 0.00 46.63 4.18
742 753 3.474034 GACTCTGCTGCGTGCGAC 61.474 66.667 0.00 0.00 46.63 5.19
743 754 2.969677 TTTGACTCTGCTGCGTGCGA 62.970 55.000 0.00 0.00 46.63 5.10
744 755 2.104770 TTTTGACTCTGCTGCGTGCG 62.105 55.000 0.00 0.00 46.63 5.34
745 756 0.029300 TTTTTGACTCTGCTGCGTGC 59.971 50.000 0.00 0.00 43.25 5.34
770 781 6.125719 AGAGGTCTCTGCTCTTTTTCTTTTT 58.874 36.000 0.00 0.00 38.75 1.94
771 782 5.689835 AGAGGTCTCTGCTCTTTTTCTTTT 58.310 37.500 0.00 0.00 38.75 2.27
772 783 5.303259 AGAGGTCTCTGCTCTTTTTCTTT 57.697 39.130 0.00 0.00 38.75 2.52
773 784 4.972751 AGAGGTCTCTGCTCTTTTTCTT 57.027 40.909 0.00 0.00 38.75 2.52
774 785 4.221924 GGTAGAGGTCTCTGCTCTTTTTCT 59.778 45.833 14.04 0.00 41.26 2.52
775 786 4.500127 GGTAGAGGTCTCTGCTCTTTTTC 58.500 47.826 14.04 0.00 41.26 2.29
776 787 3.056465 CGGTAGAGGTCTCTGCTCTTTTT 60.056 47.826 14.04 0.00 41.26 1.94
777 788 2.494073 CGGTAGAGGTCTCTGCTCTTTT 59.506 50.000 14.04 0.00 41.26 2.27
778 789 2.096248 CGGTAGAGGTCTCTGCTCTTT 58.904 52.381 14.04 0.00 41.26 2.52
779 790 1.282447 TCGGTAGAGGTCTCTGCTCTT 59.718 52.381 14.04 0.00 41.26 2.85
780 791 0.913205 TCGGTAGAGGTCTCTGCTCT 59.087 55.000 14.04 0.00 41.26 4.09
781 792 1.402613 GTTCGGTAGAGGTCTCTGCTC 59.597 57.143 14.04 5.61 41.26 4.26
851 862 1.240641 TGGTTGTGCGGGCTTGTATG 61.241 55.000 0.00 0.00 0.00 2.39
939 954 0.727970 CGGGTTGTTCACGTGTTGAA 59.272 50.000 16.51 0.00 42.26 2.69
966 981 1.381327 GGGTCGAGGTGAGGATGGA 60.381 63.158 0.00 0.00 0.00 3.41
1022 1040 2.825836 GCTTGGCCTGGATGACGG 60.826 66.667 3.32 0.00 0.00 4.79
1053 1071 1.243342 CGAAAACTGCATGCCTGGGA 61.243 55.000 16.68 0.00 0.00 4.37
1110 1128 3.059166 GTTACAAGCAAAAGCCATGGTG 58.941 45.455 14.67 4.51 0.00 4.17
1131 1149 2.806577 CAGCATGCTAGATCGACCG 58.193 57.895 22.19 0.00 0.00 4.79
1487 1513 4.219725 AGAAGTTTCCGAGGAGAAGAGAAG 59.780 45.833 0.00 0.00 0.00 2.85
1507 1533 4.866508 TCAGAGAAGGTCGCTAAAAGAA 57.133 40.909 0.00 0.00 0.00 2.52
1510 1536 5.575606 CGTATTTCAGAGAAGGTCGCTAAAA 59.424 40.000 0.00 0.00 0.00 1.52
1530 1559 3.633235 GATCGACTCATTCAGCACGTAT 58.367 45.455 0.00 0.00 0.00 3.06
1531 1560 2.538939 CGATCGACTCATTCAGCACGTA 60.539 50.000 10.26 0.00 0.00 3.57
1532 1561 1.795525 CGATCGACTCATTCAGCACGT 60.796 52.381 10.26 0.00 0.00 4.49
1583 1612 0.179062 ATTAAGCAGGGCAGAGCGAG 60.179 55.000 0.00 0.00 35.48 5.03
1585 1614 2.175878 ATATTAAGCAGGGCAGAGCG 57.824 50.000 0.00 0.00 35.48 5.03
1600 1629 9.760077 ATTAGAACAGATTAACGGTCGAATATT 57.240 29.630 0.00 0.00 0.00 1.28
1603 1632 8.388103 CAAATTAGAACAGATTAACGGTCGAAT 58.612 33.333 0.00 0.00 0.00 3.34
1623 1652 0.604243 ACGCCCACGCAGACAAATTA 60.604 50.000 0.00 0.00 45.53 1.40
1625 1654 2.281484 ACGCCCACGCAGACAAAT 60.281 55.556 0.00 0.00 45.53 2.32
1656 1687 2.045926 CCCACCTCTTTGCTCGGG 60.046 66.667 0.00 0.00 0.00 5.14
1699 1730 7.049133 AGTACAGAGACGTGTTCAGATATACT 58.951 38.462 0.00 0.00 31.46 2.12
1705 1736 3.252701 GGAAGTACAGAGACGTGTTCAGA 59.747 47.826 0.00 0.00 31.46 3.27
1753 1790 4.022849 GCAGAAAAACCTAAGCACTGACAT 60.023 41.667 0.00 0.00 0.00 3.06
1777 1814 2.054453 GGGTTCCCTGCTTGGATGC 61.054 63.158 0.00 0.00 38.35 3.91
1782 1819 0.038744 AGATGTGGGTTCCCTGCTTG 59.961 55.000 9.43 0.00 0.00 4.01
1784 1821 1.687612 CAGATGTGGGTTCCCTGCT 59.312 57.895 9.43 0.00 0.00 4.24
1785 1822 1.379044 CCAGATGTGGGTTCCCTGC 60.379 63.158 9.43 3.20 40.67 4.85
1850 1891 3.712016 ATATGTACCTGTGTGCCAACA 57.288 42.857 0.00 0.00 0.00 3.33
1900 1946 2.046892 CAGCACCGGGGTTCTGAG 60.047 66.667 11.43 0.00 40.82 3.35
1937 1986 3.009473 TCAGAGAAAAACAGAGGGGATGG 59.991 47.826 0.00 0.00 0.00 3.51
1940 1989 4.350816 TCATTCAGAGAAAAACAGAGGGGA 59.649 41.667 0.00 0.00 0.00 4.81
1942 1991 6.618811 CATTCATTCAGAGAAAAACAGAGGG 58.381 40.000 0.00 0.00 0.00 4.30
1943 1992 6.091437 GCATTCATTCAGAGAAAAACAGAGG 58.909 40.000 0.00 0.00 0.00 3.69
1972 2022 4.527583 CTCCAGCGCCTCCTGCTC 62.528 72.222 2.29 0.00 41.72 4.26
1973 2023 3.965026 TACTCCAGCGCCTCCTGCT 62.965 63.158 2.29 0.00 45.31 4.24
2017 2067 2.044555 TCTTCGCCGACGTCTCCAT 61.045 57.895 14.70 0.00 41.18 3.41
2031 2081 2.733593 ACGTTCTGCGCCGTCTTC 60.734 61.111 4.18 0.00 46.11 2.87
2078 2128 6.463995 AGAAGCAGGTAGAGTTTCATAGAG 57.536 41.667 0.00 0.00 0.00 2.43
2105 2155 1.001240 GCGAGAGATGAAGCCGATCG 61.001 60.000 8.51 8.51 0.00 3.69
2122 2176 2.991190 ACGTATCAGTACAACCAAAGCG 59.009 45.455 0.00 0.00 0.00 4.68
2126 2180 4.325028 ACACACGTATCAGTACAACCAA 57.675 40.909 0.00 0.00 0.00 3.67
2129 2183 5.608843 CGACAAACACACGTATCAGTACAAC 60.609 44.000 0.00 0.00 0.00 3.32
2130 2184 4.441744 CGACAAACACACGTATCAGTACAA 59.558 41.667 0.00 0.00 0.00 2.41
2131 2185 3.976306 CGACAAACACACGTATCAGTACA 59.024 43.478 0.00 0.00 0.00 2.90
2234 2318 2.031163 GAGCAGCAGAACCACCGT 59.969 61.111 0.00 0.00 0.00 4.83
2294 2378 1.825474 CCACACGACACCTTCTCCTAT 59.175 52.381 0.00 0.00 0.00 2.57
2299 2383 1.825474 CCTATCCACACGACACCTTCT 59.175 52.381 0.00 0.00 0.00 2.85
2308 2392 1.202417 ACGCAGAATCCTATCCACACG 60.202 52.381 0.00 0.00 0.00 4.49
2360 2444 3.644884 ACAAGTACAGTCGAGTCCTTG 57.355 47.619 16.58 16.58 36.32 3.61
2383 2468 4.022155 CCATCACCAATTCACAACACATCA 60.022 41.667 0.00 0.00 0.00 3.07
2397 2483 2.423231 CCAGATGCCATACCATCACCAA 60.423 50.000 5.12 0.00 43.15 3.67
2411 2497 6.321435 ACCTTAAAGGCTTATAAACCAGATGC 59.679 38.462 7.63 0.00 39.63 3.91
2424 2510 1.328279 GTGCACCACCTTAAAGGCTT 58.672 50.000 5.22 0.00 39.63 4.35
2425 2511 0.889186 CGTGCACCACCTTAAAGGCT 60.889 55.000 12.15 0.00 39.63 4.58
2426 2512 1.170290 ACGTGCACCACCTTAAAGGC 61.170 55.000 12.15 0.00 39.63 4.35
2427 2513 1.314730 AACGTGCACCACCTTAAAGG 58.685 50.000 12.15 0.00 42.49 3.11
2428 2514 3.112580 CAAAACGTGCACCACCTTAAAG 58.887 45.455 12.15 0.00 0.00 1.85
2429 2515 2.159226 CCAAAACGTGCACCACCTTAAA 60.159 45.455 12.15 0.00 0.00 1.52
2430 2516 1.405821 CCAAAACGTGCACCACCTTAA 59.594 47.619 12.15 0.00 0.00 1.85
2431 2517 1.025812 CCAAAACGTGCACCACCTTA 58.974 50.000 12.15 0.00 0.00 2.69
2432 2518 0.968393 ACCAAAACGTGCACCACCTT 60.968 50.000 12.15 0.00 0.00 3.50
2433 2519 1.379309 ACCAAAACGTGCACCACCT 60.379 52.632 12.15 0.00 0.00 4.00
2461 2547 1.602605 AACGTGCAGTTTAGCCCCC 60.603 57.895 0.00 0.00 40.88 5.40
2490 2576 8.669243 CAGTCCCATTTGAAATAGAGAAAGTAC 58.331 37.037 0.00 0.00 0.00 2.73
2518 2605 4.661709 AGTTTTCAGTCCACTTACCCCTAA 59.338 41.667 0.00 0.00 0.00 2.69
2530 2617 3.554960 GGCCCAAATTGAGTTTTCAGTCC 60.555 47.826 0.00 0.00 34.15 3.85
2540 2627 1.755179 ATCGACTGGCCCAAATTGAG 58.245 50.000 0.00 0.00 0.00 3.02
2544 2631 0.035439 ACGAATCGACTGGCCCAAAT 60.035 50.000 10.55 0.00 0.00 2.32
2546 2633 1.079405 GACGAATCGACTGGCCCAA 60.079 57.895 10.55 0.00 0.00 4.12
2564 2651 5.743872 GCTCGTTTTAAATCCAATGGCTTAG 59.256 40.000 0.00 0.00 0.00 2.18
2571 2658 3.754323 TGACCGCTCGTTTTAAATCCAAT 59.246 39.130 0.00 0.00 0.00 3.16
2573 2660 2.739913 CTGACCGCTCGTTTTAAATCCA 59.260 45.455 0.00 0.00 0.00 3.41
2576 2663 4.094442 GGAATCTGACCGCTCGTTTTAAAT 59.906 41.667 0.00 0.00 0.00 1.40
2577 2664 3.434299 GGAATCTGACCGCTCGTTTTAAA 59.566 43.478 0.00 0.00 0.00 1.52
2578 2665 2.997986 GGAATCTGACCGCTCGTTTTAA 59.002 45.455 0.00 0.00 0.00 1.52
2580 2667 1.002087 AGGAATCTGACCGCTCGTTTT 59.998 47.619 0.00 0.00 0.00 2.43
2581 2668 0.608640 AGGAATCTGACCGCTCGTTT 59.391 50.000 0.00 0.00 0.00 3.60
2582 2669 0.608640 AAGGAATCTGACCGCTCGTT 59.391 50.000 0.00 0.00 0.00 3.85
2583 2670 0.173708 GAAGGAATCTGACCGCTCGT 59.826 55.000 0.00 0.00 0.00 4.18
2584 2671 0.457851 AGAAGGAATCTGACCGCTCG 59.542 55.000 0.00 0.00 36.88 5.03
2586 2673 1.902508 TGAAGAAGGAATCTGACCGCT 59.097 47.619 0.00 0.00 38.79 5.52
2588 2675 3.003480 GGTTGAAGAAGGAATCTGACCG 58.997 50.000 0.00 0.00 38.79 4.79
2589 2676 4.257731 GAGGTTGAAGAAGGAATCTGACC 58.742 47.826 0.00 0.00 38.79 4.02
2591 2678 3.909995 TGGAGGTTGAAGAAGGAATCTGA 59.090 43.478 0.00 0.00 38.79 3.27
2593 2680 3.308046 GCTGGAGGTTGAAGAAGGAATCT 60.308 47.826 0.00 0.00 41.32 2.40
2595 2682 2.616510 CGCTGGAGGTTGAAGAAGGAAT 60.617 50.000 0.00 0.00 0.00 3.01
2596 2683 1.270839 CGCTGGAGGTTGAAGAAGGAA 60.271 52.381 0.00 0.00 0.00 3.36
2597 2684 0.321671 CGCTGGAGGTTGAAGAAGGA 59.678 55.000 0.00 0.00 0.00 3.36
2598 2685 1.301677 GCGCTGGAGGTTGAAGAAGG 61.302 60.000 0.00 0.00 0.00 3.46
2599 2686 1.301677 GGCGCTGGAGGTTGAAGAAG 61.302 60.000 7.64 0.00 0.00 2.85
2601 2688 2.347490 GGCGCTGGAGGTTGAAGA 59.653 61.111 7.64 0.00 0.00 2.87
2602 2689 2.747855 GGGCGCTGGAGGTTGAAG 60.748 66.667 7.64 0.00 0.00 3.02
2603 2690 4.344865 GGGGCGCTGGAGGTTGAA 62.345 66.667 7.64 0.00 0.00 2.69
2609 2696 4.351054 AAAGGTGGGGCGCTGGAG 62.351 66.667 7.64 0.00 0.00 3.86
2610 2697 4.659172 CAAAGGTGGGGCGCTGGA 62.659 66.667 7.64 0.00 0.00 3.86
2611 2698 4.974721 ACAAAGGTGGGGCGCTGG 62.975 66.667 7.64 0.00 0.00 4.85
2612 2699 2.420466 GAAACAAAGGTGGGGCGCTG 62.420 60.000 7.64 0.00 0.00 5.18
2613 2700 2.123468 AAACAAAGGTGGGGCGCT 60.123 55.556 7.64 0.00 0.00 5.92
2615 2702 1.112916 AAGGAAACAAAGGTGGGGCG 61.113 55.000 0.00 0.00 0.00 6.13
2616 2703 2.003937 TAAGGAAACAAAGGTGGGGC 57.996 50.000 0.00 0.00 0.00 5.80
2618 2705 3.439129 GTCGATAAGGAAACAAAGGTGGG 59.561 47.826 0.00 0.00 0.00 4.61
2619 2706 3.439129 GGTCGATAAGGAAACAAAGGTGG 59.561 47.826 0.00 0.00 0.00 4.61
2620 2707 3.439129 GGGTCGATAAGGAAACAAAGGTG 59.561 47.826 0.00 0.00 0.00 4.00
2621 2708 3.682696 GGGTCGATAAGGAAACAAAGGT 58.317 45.455 0.00 0.00 0.00 3.50
2622 2709 2.676342 CGGGTCGATAAGGAAACAAAGG 59.324 50.000 0.00 0.00 0.00 3.11
2623 2710 2.095372 GCGGGTCGATAAGGAAACAAAG 59.905 50.000 0.00 0.00 0.00 2.77
2624 2711 2.078392 GCGGGTCGATAAGGAAACAAA 58.922 47.619 0.00 0.00 0.00 2.83
2625 2712 1.676615 GGCGGGTCGATAAGGAAACAA 60.677 52.381 0.00 0.00 0.00 2.83
2626 2713 0.108041 GGCGGGTCGATAAGGAAACA 60.108 55.000 0.00 0.00 0.00 2.83
2628 2715 1.523524 GGGCGGGTCGATAAGGAAA 59.476 57.895 0.00 0.00 0.00 3.13
2629 2716 2.437396 GGGGCGGGTCGATAAGGAA 61.437 63.158 0.00 0.00 0.00 3.36
2630 2717 2.841044 GGGGCGGGTCGATAAGGA 60.841 66.667 0.00 0.00 0.00 3.36
2631 2718 3.158648 TGGGGCGGGTCGATAAGG 61.159 66.667 0.00 0.00 0.00 2.69
2632 2719 2.108362 GTGGGGCGGGTCGATAAG 59.892 66.667 0.00 0.00 0.00 1.73
2633 2720 3.840594 CGTGGGGCGGGTCGATAA 61.841 66.667 0.00 0.00 36.85 1.75
2634 2721 3.712771 TACGTGGGGCGGGTCGATA 62.713 63.158 0.00 0.00 46.52 2.92
2640 2727 4.540735 GATGGTACGTGGGGCGGG 62.541 72.222 0.00 0.00 46.52 6.13
2641 2728 4.540735 GGATGGTACGTGGGGCGG 62.541 72.222 0.00 0.00 46.52 6.13
2645 2732 2.806503 TTTGGCGGATGGTACGTGGG 62.807 60.000 0.00 0.00 0.00 4.61
2646 2733 1.376166 TTTGGCGGATGGTACGTGG 60.376 57.895 0.00 0.00 0.00 4.94
2647 2734 1.641123 GGTTTGGCGGATGGTACGTG 61.641 60.000 0.00 0.00 0.00 4.49
2648 2735 1.376295 GGTTTGGCGGATGGTACGT 60.376 57.895 0.00 0.00 0.00 3.57
2649 2736 2.457778 CGGTTTGGCGGATGGTACG 61.458 63.158 0.00 0.00 0.00 3.67
2650 2737 2.110352 CCGGTTTGGCGGATGGTAC 61.110 63.158 0.00 0.00 0.00 3.34
2651 2738 2.269562 CCGGTTTGGCGGATGGTA 59.730 61.111 0.00 0.00 0.00 3.25
2660 2747 2.676121 TGATGGCTGCCGGTTTGG 60.676 61.111 14.98 0.00 42.50 3.28
2661 2748 2.568090 GTGATGGCTGCCGGTTTG 59.432 61.111 14.98 0.00 0.00 2.93
2662 2749 2.676471 GGTGATGGCTGCCGGTTT 60.676 61.111 14.98 0.00 0.00 3.27
2709 2796 4.410400 GAGGGTGGGACGGCAAGG 62.410 72.222 0.00 0.00 0.00 3.61
2717 2804 2.283676 GTGGACGAGAGGGTGGGA 60.284 66.667 0.00 0.00 0.00 4.37
2808 2905 1.695893 CTATCTTGTGTGCGTGCGGG 61.696 60.000 0.00 0.00 0.00 6.13
2809 2906 0.735978 TCTATCTTGTGTGCGTGCGG 60.736 55.000 0.00 0.00 0.00 5.69
2810 2907 1.067693 TTCTATCTTGTGTGCGTGCG 58.932 50.000 0.00 0.00 0.00 5.34
2811 2908 3.226347 GTTTTCTATCTTGTGTGCGTGC 58.774 45.455 0.00 0.00 0.00 5.34
2812 2909 3.664276 CGGTTTTCTATCTTGTGTGCGTG 60.664 47.826 0.00 0.00 0.00 5.34
2813 2910 2.478894 CGGTTTTCTATCTTGTGTGCGT 59.521 45.455 0.00 0.00 0.00 5.24
2814 2911 2.159707 CCGGTTTTCTATCTTGTGTGCG 60.160 50.000 0.00 0.00 0.00 5.34
2815 2912 2.161609 CCCGGTTTTCTATCTTGTGTGC 59.838 50.000 0.00 0.00 0.00 4.57
2816 2913 3.435671 GTCCCGGTTTTCTATCTTGTGTG 59.564 47.826 0.00 0.00 0.00 3.82
2817 2914 3.071892 TGTCCCGGTTTTCTATCTTGTGT 59.928 43.478 0.00 0.00 0.00 3.72
2818 2915 3.435671 GTGTCCCGGTTTTCTATCTTGTG 59.564 47.826 0.00 0.00 0.00 3.33
2819 2916 3.558533 GGTGTCCCGGTTTTCTATCTTGT 60.559 47.826 0.00 0.00 0.00 3.16
2820 2917 3.007635 GGTGTCCCGGTTTTCTATCTTG 58.992 50.000 0.00 0.00 0.00 3.02
2821 2918 2.910977 AGGTGTCCCGGTTTTCTATCTT 59.089 45.455 0.00 0.00 35.12 2.40
2822 2919 2.547990 AGGTGTCCCGGTTTTCTATCT 58.452 47.619 0.00 0.00 35.12 1.98
2831 2928 0.765519 AAAGTGGTAGGTGTCCCGGT 60.766 55.000 0.00 0.00 35.12 5.28
2833 2930 2.564062 TCTTAAAGTGGTAGGTGTCCCG 59.436 50.000 0.00 0.00 35.12 5.14
2837 2934 6.070938 GGTGTCTATCTTAAAGTGGTAGGTGT 60.071 42.308 0.00 0.00 0.00 4.16
2838 2935 6.338937 GGTGTCTATCTTAAAGTGGTAGGTG 58.661 44.000 0.00 0.00 0.00 4.00
2839 2936 5.126707 CGGTGTCTATCTTAAAGTGGTAGGT 59.873 44.000 0.00 0.00 0.00 3.08
2849 2946 3.698040 GGTGACCTCGGTGTCTATCTTAA 59.302 47.826 0.00 0.00 36.21 1.85
2878 2975 2.158234 AGCCCTCTGGGTCTATCTTAGG 60.158 54.545 4.42 0.00 46.51 2.69
2916 3013 1.229788 AGGGAAGGAAGGAGCAGCT 60.230 57.895 0.00 0.00 0.00 4.24
2979 3076 6.354130 AGCTACTTGTAAGTCACCTGAAAAA 58.646 36.000 0.00 0.00 40.37 1.94
3038 3135 5.009010 AGGTGCAAACTGTGTATTCTTTCTG 59.991 40.000 0.00 0.00 0.00 3.02
3053 3150 5.041287 GGTTTGAGAAGTTAAGGTGCAAAC 58.959 41.667 0.00 0.00 41.47 2.93
3116 3215 7.320384 TGAACAGATATGATGGATATGTGGT 57.680 36.000 0.00 0.00 40.19 4.16
3119 3218 8.265764 CAGGATGAACAGATATGATGGATATGT 58.734 37.037 0.00 0.00 39.69 2.29
3123 3222 6.501102 AGACAGGATGAACAGATATGATGGAT 59.499 38.462 0.00 0.00 39.69 3.41
3124 3223 5.842874 AGACAGGATGAACAGATATGATGGA 59.157 40.000 0.00 0.00 39.69 3.41
3130 3229 4.964897 TCACCAGACAGGATGAACAGATAT 59.035 41.667 0.00 0.00 39.69 1.63
3134 3233 2.693069 GTCACCAGACAGGATGAACAG 58.307 52.381 0.00 0.00 44.34 3.16
3160 3259 1.808390 GGCGCGTTAGGTGTTCGAT 60.808 57.895 8.43 0.00 0.00 3.59
3171 3270 2.515057 TTCTTGGTGTGGCGCGTT 60.515 55.556 8.43 0.00 0.00 4.84
3174 3273 2.594592 AGGTTCTTGGTGTGGCGC 60.595 61.111 0.00 0.00 0.00 6.53
3175 3274 0.817634 TTGAGGTTCTTGGTGTGGCG 60.818 55.000 0.00 0.00 0.00 5.69
3203 3312 2.219674 GCATAAATTCGAGCTCGTCCAG 59.780 50.000 33.33 18.77 40.80 3.86
3211 3320 6.367149 TGTGATGATCTAGCATAAATTCGAGC 59.633 38.462 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.