Multiple sequence alignment - TraesCS7B01G342400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G342400 chr7B 100.000 3053 0 0 1 3053 597452388 597455440 0.000000e+00 5638.0
1 TraesCS7B01G342400 chr7D 92.701 2562 107 29 332 2845 552324364 552326893 0.000000e+00 3622.0
2 TraesCS7B01G342400 chr7D 79.004 743 134 16 1184 1921 48824684 48823959 3.540000e-134 488.0
3 TraesCS7B01G342400 chr7D 94.538 238 12 1 67 304 167245687 167245923 1.730000e-97 366.0
4 TraesCS7B01G342400 chr7D 88.532 218 17 5 2834 3045 552326990 552327205 1.090000e-64 257.0
5 TraesCS7B01G342400 chr7A 94.197 2068 73 21 306 2332 637993650 637995711 0.000000e+00 3110.0
6 TraesCS7B01G342400 chr7A 83.940 1208 127 27 827 2017 638132016 638133173 0.000000e+00 1094.0
7 TraesCS7B01G342400 chr7A 83.643 269 24 7 631 880 638131760 638132027 5.090000e-58 235.0
8 TraesCS7B01G342400 chr7A 83.744 203 19 6 2834 3034 637996654 637996844 2.420000e-41 180.0
9 TraesCS7B01G342400 chr5A 83.993 1087 149 19 989 2054 708183043 708184125 0.000000e+00 1020.0
10 TraesCS7B01G342400 chr5A 93.724 239 15 0 67 305 28762017 28761779 2.890000e-95 359.0
11 TraesCS7B01G342400 chr4B 83.564 1083 144 18 1001 2054 668873284 668874361 0.000000e+00 983.0
12 TraesCS7B01G342400 chrUn 86.892 740 85 9 1252 1985 28781714 28782447 0.000000e+00 819.0
13 TraesCS7B01G342400 chr4A 78.178 944 151 28 1013 1924 604105189 604104269 4.450000e-153 551.0
14 TraesCS7B01G342400 chr4A 92.887 239 17 0 67 305 688707419 688707181 6.270000e-92 348.0
15 TraesCS7B01G342400 chr2D 78.402 926 141 38 1024 1918 13770229 13771126 5.760000e-152 547.0
16 TraesCS7B01G342400 chr3B 77.536 966 164 33 991 1923 700073340 700072395 1.610000e-147 532.0
17 TraesCS7B01G342400 chr3B 94.561 239 13 0 67 305 224931743 224931505 1.340000e-98 370.0
18 TraesCS7B01G342400 chr2B 79.920 747 102 27 1181 1918 25069388 25070095 3.510000e-139 505.0
19 TraesCS7B01G342400 chr2B 92.050 239 19 0 67 305 602105371 602105133 1.360000e-88 337.0
20 TraesCS7B01G342400 chr2B 80.203 197 30 7 1149 1339 41381438 41381631 4.100000e-29 139.0
21 TraesCS7B01G342400 chr3A 95.339 236 11 0 70 305 536625097 536624862 2.870000e-100 375.0
22 TraesCS7B01G342400 chr6B 95.652 230 10 0 67 296 134681959 134681730 1.340000e-98 370.0
23 TraesCS7B01G342400 chr6B 79.310 203 29 9 1531 1731 187212914 187212723 2.470000e-26 130.0
24 TraesCS7B01G342400 chr3D 94.561 239 13 0 67 305 357428937 357428699 1.340000e-98 370.0
25 TraesCS7B01G342400 chr1A 94.093 237 13 1 70 305 222370855 222370619 2.890000e-95 359.0
26 TraesCS7B01G342400 chr1D 84.277 159 21 4 2548 2705 66999739 66999584 5.270000e-33 152.0
27 TraesCS7B01G342400 chr1D 94.118 34 2 0 1219 1252 84777639 84777606 6.000000e-03 52.8
28 TraesCS7B01G342400 chr2A 81.481 162 18 8 1572 1731 273358062 273357911 4.130000e-24 122.0
29 TraesCS7B01G342400 chr6A 81.818 143 24 2 2565 2705 15863801 15863659 5.350000e-23 119.0
30 TraesCS7B01G342400 chr5D 76.687 163 36 2 2851 3011 287569375 287569537 4.190000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G342400 chr7B 597452388 597455440 3052 False 5638.0 5638 100.0000 1 3053 1 chr7B.!!$F1 3052
1 TraesCS7B01G342400 chr7D 552324364 552327205 2841 False 1939.5 3622 90.6165 332 3045 2 chr7D.!!$F2 2713
2 TraesCS7B01G342400 chr7D 48823959 48824684 725 True 488.0 488 79.0040 1184 1921 1 chr7D.!!$R1 737
3 TraesCS7B01G342400 chr7A 637993650 637996844 3194 False 1645.0 3110 88.9705 306 3034 2 chr7A.!!$F1 2728
4 TraesCS7B01G342400 chr7A 638131760 638133173 1413 False 664.5 1094 83.7915 631 2017 2 chr7A.!!$F2 1386
5 TraesCS7B01G342400 chr5A 708183043 708184125 1082 False 1020.0 1020 83.9930 989 2054 1 chr5A.!!$F1 1065
6 TraesCS7B01G342400 chr4B 668873284 668874361 1077 False 983.0 983 83.5640 1001 2054 1 chr4B.!!$F1 1053
7 TraesCS7B01G342400 chrUn 28781714 28782447 733 False 819.0 819 86.8920 1252 1985 1 chrUn.!!$F1 733
8 TraesCS7B01G342400 chr4A 604104269 604105189 920 True 551.0 551 78.1780 1013 1924 1 chr4A.!!$R1 911
9 TraesCS7B01G342400 chr2D 13770229 13771126 897 False 547.0 547 78.4020 1024 1918 1 chr2D.!!$F1 894
10 TraesCS7B01G342400 chr3B 700072395 700073340 945 True 532.0 532 77.5360 991 1923 1 chr3B.!!$R2 932
11 TraesCS7B01G342400 chr2B 25069388 25070095 707 False 505.0 505 79.9200 1181 1918 1 chr2B.!!$F1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.034186 TGCCTGGGCTAAGGACATTG 60.034 55.0 13.05 0.0 40.02 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2249 1.142778 GCATTCACGCCTCGTCTCTC 61.143 60.0 0.0 0.0 38.32 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.546829 AATGCCTAACCTAACACGAAGA 57.453 40.909 0.00 0.00 0.00 2.87
23 24 3.308438 TGCCTAACCTAACACGAAGAC 57.692 47.619 0.00 0.00 0.00 3.01
24 25 2.028748 TGCCTAACCTAACACGAAGACC 60.029 50.000 0.00 0.00 0.00 3.85
25 26 2.028748 GCCTAACCTAACACGAAGACCA 60.029 50.000 0.00 0.00 0.00 4.02
26 27 3.582780 CCTAACCTAACACGAAGACCAC 58.417 50.000 0.00 0.00 0.00 4.16
27 28 3.257624 CCTAACCTAACACGAAGACCACT 59.742 47.826 0.00 0.00 0.00 4.00
28 29 3.832615 AACCTAACACGAAGACCACTT 57.167 42.857 0.00 0.00 39.24 3.16
29 30 3.107642 ACCTAACACGAAGACCACTTG 57.892 47.619 0.00 0.00 36.39 3.16
30 31 2.433239 ACCTAACACGAAGACCACTTGT 59.567 45.455 0.00 0.00 36.39 3.16
31 32 3.118519 ACCTAACACGAAGACCACTTGTT 60.119 43.478 0.00 0.00 36.39 2.83
32 33 4.099881 ACCTAACACGAAGACCACTTGTTA 59.900 41.667 0.00 0.00 36.39 2.41
33 34 4.446719 CCTAACACGAAGACCACTTGTTAC 59.553 45.833 0.00 0.00 36.39 2.50
34 35 3.814005 ACACGAAGACCACTTGTTACT 57.186 42.857 0.00 0.00 36.39 2.24
35 36 4.924305 ACACGAAGACCACTTGTTACTA 57.076 40.909 0.00 0.00 36.39 1.82
36 37 4.614946 ACACGAAGACCACTTGTTACTAC 58.385 43.478 0.00 0.00 36.39 2.73
37 38 4.340381 ACACGAAGACCACTTGTTACTACT 59.660 41.667 0.00 0.00 36.39 2.57
38 39 5.532406 ACACGAAGACCACTTGTTACTACTA 59.468 40.000 0.00 0.00 36.39 1.82
39 40 6.084925 CACGAAGACCACTTGTTACTACTAG 58.915 44.000 0.00 0.00 36.39 2.57
40 41 5.094134 CGAAGACCACTTGTTACTACTAGC 58.906 45.833 0.00 0.00 36.39 3.42
41 42 5.335426 CGAAGACCACTTGTTACTACTAGCA 60.335 44.000 0.00 0.00 36.39 3.49
42 43 5.388408 AGACCACTTGTTACTACTAGCAC 57.612 43.478 0.00 0.00 31.37 4.40
43 44 4.831155 AGACCACTTGTTACTACTAGCACA 59.169 41.667 0.00 0.00 31.37 4.57
44 45 4.879598 ACCACTTGTTACTACTAGCACAC 58.120 43.478 0.00 0.00 31.37 3.82
45 46 3.918591 CCACTTGTTACTACTAGCACACG 59.081 47.826 0.00 0.00 31.37 4.49
46 47 4.320714 CCACTTGTTACTACTAGCACACGA 60.321 45.833 0.00 0.00 31.37 4.35
47 48 5.399858 CACTTGTTACTACTAGCACACGAT 58.600 41.667 0.00 0.00 31.37 3.73
48 49 6.403964 CCACTTGTTACTACTAGCACACGATA 60.404 42.308 0.00 0.00 31.37 2.92
49 50 7.025365 CACTTGTTACTACTAGCACACGATAA 58.975 38.462 0.00 0.00 31.37 1.75
50 51 7.218393 CACTTGTTACTACTAGCACACGATAAG 59.782 40.741 0.00 0.00 31.37 1.73
51 52 6.127810 TGTTACTACTAGCACACGATAAGG 57.872 41.667 0.00 0.00 0.00 2.69
52 53 5.882000 TGTTACTACTAGCACACGATAAGGA 59.118 40.000 0.00 0.00 0.00 3.36
53 54 4.897025 ACTACTAGCACACGATAAGGAC 57.103 45.455 0.00 0.00 0.00 3.85
54 55 2.846039 ACTAGCACACGATAAGGACG 57.154 50.000 0.00 0.00 0.00 4.79
55 56 1.404391 ACTAGCACACGATAAGGACGG 59.596 52.381 0.00 0.00 34.93 4.79
56 57 0.101759 TAGCACACGATAAGGACGGC 59.898 55.000 0.00 0.00 34.93 5.68
57 58 2.171725 GCACACGATAAGGACGGCC 61.172 63.158 0.00 0.00 34.93 6.13
66 67 3.948719 AGGACGGCCTTGCGGAAA 61.949 61.111 2.12 0.00 43.90 3.13
67 68 3.431725 GGACGGCCTTGCGGAAAG 61.432 66.667 0.00 0.00 35.47 2.62
76 77 2.907910 CTTGCGGAAAGGTCATCAAG 57.092 50.000 0.00 0.00 32.21 3.02
77 78 1.470098 CTTGCGGAAAGGTCATCAAGG 59.530 52.381 0.00 0.00 34.02 3.61
78 79 0.690192 TGCGGAAAGGTCATCAAGGA 59.310 50.000 0.00 0.00 0.00 3.36
79 80 1.087501 GCGGAAAGGTCATCAAGGAC 58.912 55.000 0.00 0.00 37.06 3.85
80 81 1.359848 CGGAAAGGTCATCAAGGACG 58.640 55.000 0.00 0.00 38.70 4.79
81 82 1.067142 CGGAAAGGTCATCAAGGACGA 60.067 52.381 0.00 0.00 38.70 4.20
82 83 2.347731 GGAAAGGTCATCAAGGACGAC 58.652 52.381 0.00 0.00 38.70 4.34
83 84 1.993370 GAAAGGTCATCAAGGACGACG 59.007 52.381 0.00 0.00 38.70 5.12
84 85 0.389948 AAGGTCATCAAGGACGACGC 60.390 55.000 0.00 0.00 38.70 5.19
85 86 1.215647 GGTCATCAAGGACGACGCT 59.784 57.895 0.00 0.00 38.70 5.07
86 87 0.802607 GGTCATCAAGGACGACGCTC 60.803 60.000 0.00 0.00 38.70 5.03
87 88 1.134530 GTCATCAAGGACGACGCTCG 61.135 60.000 0.00 5.97 46.93 5.03
88 89 1.874019 CATCAAGGACGACGCTCGG 60.874 63.158 11.13 0.00 45.59 4.63
89 90 3.064987 ATCAAGGACGACGCTCGGG 62.065 63.158 11.13 0.00 45.59 5.14
112 113 4.232310 GCTTCTGCCTGGGCTAAG 57.768 61.111 13.05 15.45 42.51 2.18
113 114 1.452833 GCTTCTGCCTGGGCTAAGG 60.453 63.158 20.32 2.79 42.51 2.69
114 115 1.915078 GCTTCTGCCTGGGCTAAGGA 61.915 60.000 20.32 9.68 40.02 3.36
115 116 0.107459 CTTCTGCCTGGGCTAAGGAC 60.107 60.000 13.05 3.47 40.02 3.85
116 117 0.840288 TTCTGCCTGGGCTAAGGACA 60.840 55.000 13.05 7.16 40.02 4.02
117 118 0.621571 TCTGCCTGGGCTAAGGACAT 60.622 55.000 13.05 0.00 40.02 3.06
118 119 0.257039 CTGCCTGGGCTAAGGACATT 59.743 55.000 13.05 0.00 40.02 2.71
119 120 0.034186 TGCCTGGGCTAAGGACATTG 60.034 55.000 13.05 0.00 40.02 2.82
120 121 1.387295 GCCTGGGCTAAGGACATTGC 61.387 60.000 10.45 0.00 40.02 3.56
121 122 0.034186 CCTGGGCTAAGGACATTGCA 60.034 55.000 1.01 0.00 40.02 4.08
122 123 1.616725 CCTGGGCTAAGGACATTGCAA 60.617 52.381 0.00 0.00 40.02 4.08
123 124 2.170166 CTGGGCTAAGGACATTGCAAA 58.830 47.619 1.71 0.00 0.00 3.68
124 125 1.892474 TGGGCTAAGGACATTGCAAAC 59.108 47.619 1.71 0.00 0.00 2.93
125 126 2.171003 GGGCTAAGGACATTGCAAACT 58.829 47.619 1.71 0.00 0.00 2.66
126 127 2.562738 GGGCTAAGGACATTGCAAACTT 59.437 45.455 1.71 8.60 0.00 2.66
127 128 3.006859 GGGCTAAGGACATTGCAAACTTT 59.993 43.478 1.71 3.89 0.00 2.66
128 129 4.219725 GGGCTAAGGACATTGCAAACTTTA 59.780 41.667 1.71 4.85 0.00 1.85
129 130 5.105351 GGGCTAAGGACATTGCAAACTTTAT 60.105 40.000 1.71 0.00 0.00 1.40
130 131 5.807011 GGCTAAGGACATTGCAAACTTTATG 59.193 40.000 1.71 0.00 0.00 1.90
131 132 5.289434 GCTAAGGACATTGCAAACTTTATGC 59.711 40.000 1.71 7.81 44.08 3.14
132 133 4.192429 AGGACATTGCAAACTTTATGCC 57.808 40.909 1.71 2.30 43.16 4.40
133 134 3.834231 AGGACATTGCAAACTTTATGCCT 59.166 39.130 1.71 4.60 43.16 4.75
134 135 4.082026 AGGACATTGCAAACTTTATGCCTC 60.082 41.667 1.71 0.00 43.16 4.70
135 136 4.176271 GACATTGCAAACTTTATGCCTCC 58.824 43.478 1.71 0.00 43.16 4.30
136 137 3.055891 ACATTGCAAACTTTATGCCTCCC 60.056 43.478 1.71 0.00 43.16 4.30
137 138 2.603075 TGCAAACTTTATGCCTCCCT 57.397 45.000 0.00 0.00 43.16 4.20
138 139 2.170166 TGCAAACTTTATGCCTCCCTG 58.830 47.619 0.00 0.00 43.16 4.45
139 140 2.224992 TGCAAACTTTATGCCTCCCTGA 60.225 45.455 0.00 0.00 43.16 3.86
140 141 3.026694 GCAAACTTTATGCCTCCCTGAT 58.973 45.455 0.00 0.00 37.85 2.90
141 142 3.181483 GCAAACTTTATGCCTCCCTGATG 60.181 47.826 0.00 0.00 37.85 3.07
142 143 4.019174 CAAACTTTATGCCTCCCTGATGT 58.981 43.478 0.00 0.00 0.00 3.06
143 144 3.287867 ACTTTATGCCTCCCTGATGTG 57.712 47.619 0.00 0.00 0.00 3.21
144 145 2.578021 ACTTTATGCCTCCCTGATGTGT 59.422 45.455 0.00 0.00 0.00 3.72
145 146 3.780294 ACTTTATGCCTCCCTGATGTGTA 59.220 43.478 0.00 0.00 0.00 2.90
146 147 4.141620 ACTTTATGCCTCCCTGATGTGTAG 60.142 45.833 0.00 0.00 0.00 2.74
147 148 2.180946 ATGCCTCCCTGATGTGTAGA 57.819 50.000 0.00 0.00 0.00 2.59
148 149 2.180946 TGCCTCCCTGATGTGTAGAT 57.819 50.000 0.00 0.00 0.00 1.98
149 150 3.328535 TGCCTCCCTGATGTGTAGATA 57.671 47.619 0.00 0.00 0.00 1.98
150 151 3.234353 TGCCTCCCTGATGTGTAGATAG 58.766 50.000 0.00 0.00 0.00 2.08
151 152 2.028567 GCCTCCCTGATGTGTAGATAGC 60.029 54.545 0.00 0.00 0.00 2.97
152 153 3.505386 CCTCCCTGATGTGTAGATAGCT 58.495 50.000 0.00 0.00 0.00 3.32
153 154 4.667573 CCTCCCTGATGTGTAGATAGCTA 58.332 47.826 0.00 0.00 0.00 3.32
154 155 4.704540 CCTCCCTGATGTGTAGATAGCTAG 59.295 50.000 0.00 0.00 0.00 3.42
155 156 4.667573 TCCCTGATGTGTAGATAGCTAGG 58.332 47.826 0.00 0.00 0.00 3.02
156 157 4.106502 TCCCTGATGTGTAGATAGCTAGGT 59.893 45.833 0.00 0.00 0.00 3.08
157 158 4.835615 CCCTGATGTGTAGATAGCTAGGTT 59.164 45.833 0.00 0.00 0.00 3.50
158 159 5.279206 CCCTGATGTGTAGATAGCTAGGTTG 60.279 48.000 0.00 0.00 0.00 3.77
159 160 5.279206 CCTGATGTGTAGATAGCTAGGTTGG 60.279 48.000 0.00 0.00 0.00 3.77
160 161 4.588951 TGATGTGTAGATAGCTAGGTTGGG 59.411 45.833 0.00 0.00 0.00 4.12
161 162 3.305720 TGTGTAGATAGCTAGGTTGGGG 58.694 50.000 0.00 0.00 0.00 4.96
162 163 2.037381 GTGTAGATAGCTAGGTTGGGGC 59.963 54.545 0.00 0.00 0.00 5.80
163 164 1.624312 GTAGATAGCTAGGTTGGGGCC 59.376 57.143 0.00 0.00 0.00 5.80
164 165 1.122019 AGATAGCTAGGTTGGGGCCG 61.122 60.000 0.00 0.00 0.00 6.13
165 166 1.074775 ATAGCTAGGTTGGGGCCGA 60.075 57.895 0.00 0.00 0.00 5.54
166 167 1.122019 ATAGCTAGGTTGGGGCCGAG 61.122 60.000 0.00 0.00 34.87 4.63
167 168 4.858680 GCTAGGTTGGGGCCGAGC 62.859 72.222 0.00 0.00 46.74 5.03
168 169 3.399181 CTAGGTTGGGGCCGAGCA 61.399 66.667 4.57 0.00 0.00 4.26
169 170 3.682292 CTAGGTTGGGGCCGAGCAC 62.682 68.421 4.57 0.00 0.00 4.40
178 179 3.161450 GCCGAGCACCCCCATCTA 61.161 66.667 0.00 0.00 0.00 1.98
179 180 2.520536 GCCGAGCACCCCCATCTAT 61.521 63.158 0.00 0.00 0.00 1.98
180 181 2.056906 GCCGAGCACCCCCATCTATT 62.057 60.000 0.00 0.00 0.00 1.73
181 182 0.035458 CCGAGCACCCCCATCTATTC 59.965 60.000 0.00 0.00 0.00 1.75
182 183 1.051812 CGAGCACCCCCATCTATTCT 58.948 55.000 0.00 0.00 0.00 2.40
183 184 1.270518 CGAGCACCCCCATCTATTCTG 60.271 57.143 0.00 0.00 0.00 3.02
184 185 0.475906 AGCACCCCCATCTATTCTGC 59.524 55.000 0.00 0.00 0.00 4.26
185 186 0.475906 GCACCCCCATCTATTCTGCT 59.524 55.000 0.00 0.00 0.00 4.24
186 187 1.544314 GCACCCCCATCTATTCTGCTC 60.544 57.143 0.00 0.00 0.00 4.26
187 188 1.770658 CACCCCCATCTATTCTGCTCA 59.229 52.381 0.00 0.00 0.00 4.26
188 189 2.374504 CACCCCCATCTATTCTGCTCAT 59.625 50.000 0.00 0.00 0.00 2.90
189 190 2.374504 ACCCCCATCTATTCTGCTCATG 59.625 50.000 0.00 0.00 0.00 3.07
190 191 2.374504 CCCCCATCTATTCTGCTCATGT 59.625 50.000 0.00 0.00 0.00 3.21
191 192 3.584406 CCCCCATCTATTCTGCTCATGTA 59.416 47.826 0.00 0.00 0.00 2.29
192 193 4.564406 CCCCCATCTATTCTGCTCATGTAC 60.564 50.000 0.00 0.00 0.00 2.90
193 194 4.564406 CCCCATCTATTCTGCTCATGTACC 60.564 50.000 0.00 0.00 0.00 3.34
194 195 4.040829 CCCATCTATTCTGCTCATGTACCA 59.959 45.833 0.00 0.00 0.00 3.25
195 196 4.993584 CCATCTATTCTGCTCATGTACCAC 59.006 45.833 0.00 0.00 0.00 4.16
196 197 5.221601 CCATCTATTCTGCTCATGTACCACT 60.222 44.000 0.00 0.00 0.00 4.00
197 198 5.939764 TCTATTCTGCTCATGTACCACTT 57.060 39.130 0.00 0.00 0.00 3.16
198 199 6.299805 TCTATTCTGCTCATGTACCACTTT 57.700 37.500 0.00 0.00 0.00 2.66
199 200 6.341316 TCTATTCTGCTCATGTACCACTTTC 58.659 40.000 0.00 0.00 0.00 2.62
200 201 3.334583 TCTGCTCATGTACCACTTTCC 57.665 47.619 0.00 0.00 0.00 3.13
201 202 2.027192 TCTGCTCATGTACCACTTTCCC 60.027 50.000 0.00 0.00 0.00 3.97
202 203 1.702401 TGCTCATGTACCACTTTCCCA 59.298 47.619 0.00 0.00 0.00 4.37
203 204 2.084546 GCTCATGTACCACTTTCCCAC 58.915 52.381 0.00 0.00 0.00 4.61
204 205 2.346803 CTCATGTACCACTTTCCCACG 58.653 52.381 0.00 0.00 0.00 4.94
205 206 0.802494 CATGTACCACTTTCCCACGC 59.198 55.000 0.00 0.00 0.00 5.34
206 207 0.322187 ATGTACCACTTTCCCACGCC 60.322 55.000 0.00 0.00 0.00 5.68
207 208 1.071814 GTACCACTTTCCCACGCCA 59.928 57.895 0.00 0.00 0.00 5.69
208 209 0.535553 GTACCACTTTCCCACGCCAA 60.536 55.000 0.00 0.00 0.00 4.52
209 210 0.535553 TACCACTTTCCCACGCCAAC 60.536 55.000 0.00 0.00 0.00 3.77
210 211 1.528309 CCACTTTCCCACGCCAACT 60.528 57.895 0.00 0.00 0.00 3.16
211 212 0.250553 CCACTTTCCCACGCCAACTA 60.251 55.000 0.00 0.00 0.00 2.24
212 213 1.613255 CCACTTTCCCACGCCAACTAT 60.613 52.381 0.00 0.00 0.00 2.12
213 214 1.468520 CACTTTCCCACGCCAACTATG 59.531 52.381 0.00 0.00 0.00 2.23
214 215 0.451783 CTTTCCCACGCCAACTATGC 59.548 55.000 0.00 0.00 0.00 3.14
220 221 4.082192 CGCCAACTATGCGTACGT 57.918 55.556 17.90 0.00 46.59 3.57
221 222 1.628983 CGCCAACTATGCGTACGTG 59.371 57.895 17.90 5.72 46.59 4.49
222 223 1.748647 CGCCAACTATGCGTACGTGG 61.749 60.000 17.90 15.78 46.59 4.94
223 224 0.738412 GCCAACTATGCGTACGTGGT 60.738 55.000 17.90 2.88 0.00 4.16
224 225 1.469595 GCCAACTATGCGTACGTGGTA 60.470 52.381 17.90 6.67 0.00 3.25
225 226 2.878580 CCAACTATGCGTACGTGGTAA 58.121 47.619 17.90 0.00 0.00 2.85
226 227 3.252400 CCAACTATGCGTACGTGGTAAA 58.748 45.455 17.90 0.00 0.00 2.01
227 228 3.305094 CCAACTATGCGTACGTGGTAAAG 59.695 47.826 17.90 8.58 0.00 1.85
228 229 3.855689 ACTATGCGTACGTGGTAAAGT 57.144 42.857 17.90 9.18 0.00 2.66
229 230 3.504863 ACTATGCGTACGTGGTAAAGTG 58.495 45.455 17.90 1.01 0.00 3.16
230 231 2.728690 ATGCGTACGTGGTAAAGTGA 57.271 45.000 17.90 0.00 0.00 3.41
231 232 2.728690 TGCGTACGTGGTAAAGTGAT 57.271 45.000 17.90 0.00 0.00 3.06
232 233 3.846423 TGCGTACGTGGTAAAGTGATA 57.154 42.857 17.90 0.00 0.00 2.15
233 234 3.500982 TGCGTACGTGGTAAAGTGATAC 58.499 45.455 17.90 0.00 0.00 2.24
234 235 2.854185 GCGTACGTGGTAAAGTGATACC 59.146 50.000 17.90 0.00 44.69 2.73
235 236 3.438360 CGTACGTGGTAAAGTGATACCC 58.562 50.000 7.22 0.00 43.97 3.69
236 237 2.660189 ACGTGGTAAAGTGATACCCG 57.340 50.000 0.00 10.66 43.97 5.28
237 238 1.895131 ACGTGGTAAAGTGATACCCGT 59.105 47.619 11.57 11.57 43.97 5.28
238 239 2.264813 CGTGGTAAAGTGATACCCGTG 58.735 52.381 1.32 0.00 43.97 4.94
239 240 2.353011 CGTGGTAAAGTGATACCCGTGT 60.353 50.000 1.32 0.00 43.97 4.49
240 241 3.119531 CGTGGTAAAGTGATACCCGTGTA 60.120 47.826 1.32 0.00 43.97 2.90
241 242 4.617995 CGTGGTAAAGTGATACCCGTGTAA 60.618 45.833 1.32 0.00 43.97 2.41
242 243 5.422145 GTGGTAAAGTGATACCCGTGTAAT 58.578 41.667 1.32 0.00 43.97 1.89
243 244 5.876460 GTGGTAAAGTGATACCCGTGTAATT 59.124 40.000 1.32 0.00 43.97 1.40
244 245 6.036408 GTGGTAAAGTGATACCCGTGTAATTC 59.964 42.308 1.32 0.00 43.97 2.17
245 246 6.070653 TGGTAAAGTGATACCCGTGTAATTCT 60.071 38.462 1.32 0.00 43.97 2.40
246 247 6.257193 GGTAAAGTGATACCCGTGTAATTCTG 59.743 42.308 0.00 0.00 39.59 3.02
247 248 5.416271 AAGTGATACCCGTGTAATTCTGT 57.584 39.130 0.00 0.00 0.00 3.41
248 249 5.007385 AGTGATACCCGTGTAATTCTGTC 57.993 43.478 0.00 0.00 0.00 3.51
249 250 4.464951 AGTGATACCCGTGTAATTCTGTCA 59.535 41.667 0.00 0.00 0.00 3.58
250 251 4.565564 GTGATACCCGTGTAATTCTGTCAC 59.434 45.833 0.00 0.00 0.00 3.67
251 252 4.464951 TGATACCCGTGTAATTCTGTCACT 59.535 41.667 0.00 0.00 0.00 3.41
252 253 3.314541 ACCCGTGTAATTCTGTCACTC 57.685 47.619 0.00 0.00 0.00 3.51
253 254 2.897969 ACCCGTGTAATTCTGTCACTCT 59.102 45.455 0.00 0.00 0.00 3.24
254 255 3.323979 ACCCGTGTAATTCTGTCACTCTT 59.676 43.478 0.00 0.00 0.00 2.85
255 256 3.679980 CCCGTGTAATTCTGTCACTCTTG 59.320 47.826 0.00 0.00 0.00 3.02
256 257 4.307432 CCGTGTAATTCTGTCACTCTTGT 58.693 43.478 0.00 0.00 0.00 3.16
257 258 4.750098 CCGTGTAATTCTGTCACTCTTGTT 59.250 41.667 0.00 0.00 0.00 2.83
258 259 5.236478 CCGTGTAATTCTGTCACTCTTGTTT 59.764 40.000 0.00 0.00 0.00 2.83
259 260 6.238374 CCGTGTAATTCTGTCACTCTTGTTTT 60.238 38.462 0.00 0.00 0.00 2.43
260 261 6.846283 CGTGTAATTCTGTCACTCTTGTTTTC 59.154 38.462 0.00 0.00 0.00 2.29
261 262 7.254455 CGTGTAATTCTGTCACTCTTGTTTTCT 60.254 37.037 0.00 0.00 0.00 2.52
262 263 9.042008 GTGTAATTCTGTCACTCTTGTTTTCTA 57.958 33.333 0.00 0.00 0.00 2.10
263 264 9.042008 TGTAATTCTGTCACTCTTGTTTTCTAC 57.958 33.333 0.00 0.00 0.00 2.59
264 265 7.497925 AATTCTGTCACTCTTGTTTTCTACC 57.502 36.000 0.00 0.00 0.00 3.18
265 266 5.871396 TCTGTCACTCTTGTTTTCTACCT 57.129 39.130 0.00 0.00 0.00 3.08
266 267 6.971726 TCTGTCACTCTTGTTTTCTACCTA 57.028 37.500 0.00 0.00 0.00 3.08
267 268 7.540474 TCTGTCACTCTTGTTTTCTACCTAT 57.460 36.000 0.00 0.00 0.00 2.57
268 269 7.603651 TCTGTCACTCTTGTTTTCTACCTATC 58.396 38.462 0.00 0.00 0.00 2.08
269 270 7.232737 TCTGTCACTCTTGTTTTCTACCTATCA 59.767 37.037 0.00 0.00 0.00 2.15
270 271 7.732025 TGTCACTCTTGTTTTCTACCTATCAA 58.268 34.615 0.00 0.00 0.00 2.57
271 272 8.375506 TGTCACTCTTGTTTTCTACCTATCAAT 58.624 33.333 0.00 0.00 0.00 2.57
272 273 8.660373 GTCACTCTTGTTTTCTACCTATCAATG 58.340 37.037 0.00 0.00 0.00 2.82
273 274 7.824289 TCACTCTTGTTTTCTACCTATCAATGG 59.176 37.037 0.00 0.00 0.00 3.16
274 275 7.824289 CACTCTTGTTTTCTACCTATCAATGGA 59.176 37.037 0.00 0.00 0.00 3.41
275 276 8.383175 ACTCTTGTTTTCTACCTATCAATGGAA 58.617 33.333 0.00 0.00 0.00 3.53
276 277 9.401058 CTCTTGTTTTCTACCTATCAATGGAAT 57.599 33.333 0.00 0.00 0.00 3.01
277 278 9.177608 TCTTGTTTTCTACCTATCAATGGAATG 57.822 33.333 0.00 0.00 0.00 2.67
278 279 9.177608 CTTGTTTTCTACCTATCAATGGAATGA 57.822 33.333 0.00 0.00 0.00 2.57
279 280 9.699410 TTGTTTTCTACCTATCAATGGAATGAT 57.301 29.630 0.00 0.00 42.52 2.45
282 283 9.489084 TTTTCTACCTATCAATGGAATGATACG 57.511 33.333 0.00 0.00 40.44 3.06
283 284 6.631016 TCTACCTATCAATGGAATGATACGC 58.369 40.000 0.00 0.00 40.44 4.42
284 285 5.227569 ACCTATCAATGGAATGATACGCA 57.772 39.130 0.00 0.00 40.44 5.24
285 286 5.809001 ACCTATCAATGGAATGATACGCAT 58.191 37.500 0.00 0.00 40.44 4.73
286 287 5.877012 ACCTATCAATGGAATGATACGCATC 59.123 40.000 0.00 0.00 40.44 3.91
287 288 6.111382 CCTATCAATGGAATGATACGCATCT 58.889 40.000 0.00 0.00 40.44 2.90
288 289 6.596888 CCTATCAATGGAATGATACGCATCTT 59.403 38.462 0.00 0.00 40.44 2.40
289 290 5.678132 TCAATGGAATGATACGCATCTTG 57.322 39.130 0.00 0.00 35.78 3.02
290 291 4.023792 TCAATGGAATGATACGCATCTTGC 60.024 41.667 0.00 0.00 40.69 4.01
312 313 5.630896 CGTATTCGCGAAAAAGATAAGGA 57.369 39.130 27.23 0.00 0.00 3.36
320 321 4.708601 CGAAAAAGATAAGGACAACACGG 58.291 43.478 0.00 0.00 0.00 4.94
338 339 6.917217 ACACGGTAGCTACTACTACTAAAG 57.083 41.667 22.74 5.01 41.88 1.85
382 389 5.939764 AATACTAACTCTGCCATGACTCA 57.060 39.130 0.00 0.00 0.00 3.41
427 435 3.953612 TGACTCAAATTGCCACTGACTTT 59.046 39.130 0.00 0.00 0.00 2.66
432 440 1.401761 ATTGCCACTGACTTTGCACA 58.598 45.000 0.00 0.00 32.63 4.57
481 489 2.024871 CGTCTCTCCATCGACGGC 59.975 66.667 0.00 0.00 46.61 5.68
486 494 4.498520 CTCCATCGACGGCGCACT 62.499 66.667 5.31 0.00 37.46 4.40
595 603 1.760613 TGCCATAGTAGTGTGGTAGCC 59.239 52.381 14.22 0.00 37.28 3.93
598 606 2.972713 CCATAGTAGTGTGGTAGCCCAT 59.027 50.000 5.19 0.00 44.35 4.00
640 648 3.381908 ACGGTTCTCAGCTCTTACCATAG 59.618 47.826 0.00 0.00 0.00 2.23
648 656 4.646945 TCAGCTCTTACCATAGAGACAAGG 59.353 45.833 4.90 0.00 43.54 3.61
1632 1785 3.078836 GGCCACTACTACCCGGCA 61.079 66.667 0.00 0.00 46.75 5.69
1759 1926 1.859427 CGAGGACGACGAAGGGAACA 61.859 60.000 0.00 0.00 42.66 3.18
1932 2102 2.532715 TTCAGGGCCAAGGGAGCT 60.533 61.111 6.18 0.00 0.00 4.09
2079 2249 1.278699 AGCCTCAAGAAAGCAGAGAGG 59.721 52.381 0.00 0.00 46.71 3.69
2148 2318 0.449388 GATGAAGTTGGAGCCTTGCG 59.551 55.000 0.00 0.00 0.00 4.85
2310 2481 0.749454 GCTGACCGATGCCCTGAAAT 60.749 55.000 0.00 0.00 0.00 2.17
2349 2870 6.910536 ATTGCTGACGAAGTAAGAAATAGG 57.089 37.500 0.00 0.00 45.42 2.57
2364 2886 4.892934 AGAAATAGGAGAAGAGATGACGCT 59.107 41.667 0.00 0.00 0.00 5.07
2365 2887 5.362430 AGAAATAGGAGAAGAGATGACGCTT 59.638 40.000 0.00 0.00 38.74 4.68
2379 2901 2.464459 CGCTTCCCATTCCGCAGAC 61.464 63.158 0.00 0.00 0.00 3.51
2396 2918 0.459489 GACGAGGCTCTCTTCATGCT 59.541 55.000 13.50 0.00 30.56 3.79
2410 2932 2.629656 ATGCTTTGTGTGCTCCGGC 61.630 57.895 0.00 0.00 39.26 6.13
2464 2986 6.981762 TGTGACTAGTACTAGTAGAGCAAC 57.018 41.667 30.80 21.30 45.63 4.17
2465 2988 5.879223 TGTGACTAGTACTAGTAGAGCAACC 59.121 44.000 30.80 18.03 45.63 3.77
2483 3006 9.686683 AGAGCAACCTGAAAATATATTTACAGT 57.313 29.630 11.07 4.61 0.00 3.55
2521 3044 3.462483 TTGCTAAAACTCTGTCGACCA 57.538 42.857 14.12 0.00 0.00 4.02
2522 3045 3.462483 TGCTAAAACTCTGTCGACCAA 57.538 42.857 14.12 0.00 0.00 3.67
2523 3046 3.390135 TGCTAAAACTCTGTCGACCAAG 58.610 45.455 14.12 12.60 0.00 3.61
2524 3047 3.069016 TGCTAAAACTCTGTCGACCAAGA 59.931 43.478 14.12 9.26 0.00 3.02
2525 3048 4.246458 GCTAAAACTCTGTCGACCAAGAT 58.754 43.478 14.12 2.12 0.00 2.40
2526 3049 4.691216 GCTAAAACTCTGTCGACCAAGATT 59.309 41.667 14.12 8.38 0.00 2.40
2527 3050 5.179555 GCTAAAACTCTGTCGACCAAGATTT 59.820 40.000 14.12 17.51 0.00 2.17
2528 3051 6.367969 GCTAAAACTCTGTCGACCAAGATTTA 59.632 38.462 14.12 17.67 0.00 1.40
2529 3052 7.095355 GCTAAAACTCTGTCGACCAAGATTTAA 60.095 37.037 14.12 2.82 0.00 1.52
2530 3053 7.745620 AAAACTCTGTCGACCAAGATTTAAT 57.254 32.000 14.12 1.65 0.00 1.40
2531 3054 6.969828 AACTCTGTCGACCAAGATTTAATC 57.030 37.500 14.12 0.00 0.00 1.75
2532 3055 6.037786 ACTCTGTCGACCAAGATTTAATCA 57.962 37.500 14.12 0.00 0.00 2.57
2533 3056 6.464222 ACTCTGTCGACCAAGATTTAATCAA 58.536 36.000 14.12 0.00 0.00 2.57
2534 3057 6.591834 ACTCTGTCGACCAAGATTTAATCAAG 59.408 38.462 14.12 0.00 0.00 3.02
2535 3058 6.464222 TCTGTCGACCAAGATTTAATCAAGT 58.536 36.000 14.12 1.39 0.00 3.16
2536 3059 6.590292 TCTGTCGACCAAGATTTAATCAAGTC 59.410 38.462 14.12 9.19 0.00 3.01
2537 3060 6.464222 TGTCGACCAAGATTTAATCAAGTCT 58.536 36.000 14.12 0.00 32.49 3.24
2538 3061 6.934645 TGTCGACCAAGATTTAATCAAGTCTT 59.065 34.615 14.12 0.00 40.30 3.01
2539 3062 8.092068 TGTCGACCAAGATTTAATCAAGTCTTA 58.908 33.333 14.12 0.54 38.32 2.10
2540 3063 8.596380 GTCGACCAAGATTTAATCAAGTCTTAG 58.404 37.037 3.51 0.00 38.32 2.18
2541 3064 8.311836 TCGACCAAGATTTAATCAAGTCTTAGT 58.688 33.333 7.74 0.00 38.32 2.24
2542 3065 8.596380 CGACCAAGATTTAATCAAGTCTTAGTC 58.404 37.037 7.74 3.33 41.42 2.59
2543 3066 8.480643 ACCAAGATTTAATCAAGTCTTAGTCG 57.519 34.615 7.74 0.00 38.32 4.18
2544 3067 8.311836 ACCAAGATTTAATCAAGTCTTAGTCGA 58.688 33.333 7.74 0.00 38.32 4.20
2545 3068 8.596380 CCAAGATTTAATCAAGTCTTAGTCGAC 58.404 37.037 7.70 7.70 38.32 4.20
2546 3069 9.140286 CAAGATTTAATCAAGTCTTAGTCGACA 57.860 33.333 19.50 0.48 38.32 4.35
2563 3086 4.626172 GTCGACAGAGATTTAACCAAGTCC 59.374 45.833 11.55 0.00 0.00 3.85
2573 3096 2.005370 AACCAAGTCCCAGTCGACTA 57.995 50.000 19.57 0.00 42.35 2.59
2581 3104 0.311165 CCCAGTCGACTACATAGCCG 59.689 60.000 19.57 2.81 0.00 5.52
2582 3105 1.022735 CCAGTCGACTACATAGCCGT 58.977 55.000 19.57 0.00 30.98 5.68
2583 3106 1.404391 CCAGTCGACTACATAGCCGTT 59.596 52.381 19.57 0.00 30.98 4.44
2584 3107 2.615447 CCAGTCGACTACATAGCCGTTA 59.385 50.000 19.57 0.00 30.98 3.18
2667 3195 5.789643 ACCACTGTTTGCAACATATCTTT 57.210 34.783 0.00 0.00 41.26 2.52
2671 3199 7.394359 ACCACTGTTTGCAACATATCTTTCTAT 59.606 33.333 0.00 0.00 41.26 1.98
2691 3219 0.167470 CGGTTGCAGCATCTGTCTTG 59.833 55.000 2.05 0.00 33.43 3.02
2718 3269 0.823769 TAGCATCTGCCCTCGTCGAT 60.824 55.000 0.00 0.00 43.38 3.59
2719 3270 1.663074 GCATCTGCCCTCGTCGATC 60.663 63.158 0.00 0.00 34.31 3.69
2726 3277 1.950007 CCCTCGTCGATCGTAGCAT 59.050 57.895 15.94 0.00 40.80 3.79
2765 3317 1.948834 CATCCGCCATTGATAGTTGCA 59.051 47.619 0.00 0.00 0.00 4.08
2766 3318 2.121291 TCCGCCATTGATAGTTGCAA 57.879 45.000 0.00 0.00 0.00 4.08
2769 3329 2.094803 CCGCCATTGATAGTTGCAACAA 60.095 45.455 30.11 16.51 0.00 2.83
2789 3349 4.202388 ACAAATAGTCCCAACGGTTGTAGT 60.202 41.667 18.73 11.76 31.24 2.73
2821 3381 0.314935 GCTTGTAGCCTGCTTGCAAA 59.685 50.000 0.00 0.00 34.48 3.68
2823 3383 2.802774 GCTTGTAGCCTGCTTGCAAAAA 60.803 45.455 0.00 0.00 34.48 1.94
2824 3384 2.507339 TGTAGCCTGCTTGCAAAAAC 57.493 45.000 0.00 0.00 0.00 2.43
2828 3388 2.282407 AGCCTGCTTGCAAAAACTTTG 58.718 42.857 0.00 0.00 0.00 2.77
2829 3389 2.009051 GCCTGCTTGCAAAAACTTTGT 58.991 42.857 0.00 0.00 0.00 2.83
2830 3390 2.030823 GCCTGCTTGCAAAAACTTTGTC 59.969 45.455 0.00 0.00 0.00 3.18
2831 3391 2.282290 CCTGCTTGCAAAAACTTTGTCG 59.718 45.455 0.00 0.00 0.00 4.35
2832 3392 2.923020 CTGCTTGCAAAAACTTTGTCGT 59.077 40.909 0.00 0.00 0.00 4.34
2884 3553 1.847999 CGTTTGTTGTCTTGCTTGCAG 59.152 47.619 0.00 0.00 0.00 4.41
2924 3593 1.763968 TGTCGGCTGTAGCATCTAGT 58.236 50.000 6.18 0.00 44.36 2.57
2926 3595 1.676529 GTCGGCTGTAGCATCTAGTCA 59.323 52.381 6.18 0.00 44.36 3.41
2935 3604 2.609427 GCATCTAGTCATGCCACTCA 57.391 50.000 5.31 0.00 43.03 3.41
3051 3726 2.997980 TCAATGTTGATATGGCCACGT 58.002 42.857 8.16 0.00 31.01 4.49
3052 3727 2.682352 TCAATGTTGATATGGCCACGTG 59.318 45.455 8.16 9.08 31.01 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.369157 GGTCTTCGTGTTAGGTTAGGCAT 60.369 47.826 0.00 0.00 0.00 4.40
3 4 2.028748 GGTCTTCGTGTTAGGTTAGGCA 60.029 50.000 0.00 0.00 0.00 4.75
7 8 4.099881 ACAAGTGGTCTTCGTGTTAGGTTA 59.900 41.667 0.00 0.00 0.00 2.85
8 9 3.118519 ACAAGTGGTCTTCGTGTTAGGTT 60.119 43.478 0.00 0.00 0.00 3.50
11 12 5.287226 AGTAACAAGTGGTCTTCGTGTTAG 58.713 41.667 0.00 0.00 39.15 2.34
12 13 5.266733 AGTAACAAGTGGTCTTCGTGTTA 57.733 39.130 0.00 0.00 38.17 2.41
13 14 4.133013 AGTAACAAGTGGTCTTCGTGTT 57.867 40.909 0.00 0.00 39.73 3.32
14 15 3.814005 AGTAACAAGTGGTCTTCGTGT 57.186 42.857 0.00 0.00 0.00 4.49
15 16 4.868067 AGTAGTAACAAGTGGTCTTCGTG 58.132 43.478 0.00 0.00 0.00 4.35
16 17 5.335504 GCTAGTAGTAACAAGTGGTCTTCGT 60.336 44.000 0.00 0.00 0.00 3.85
17 18 5.094134 GCTAGTAGTAACAAGTGGTCTTCG 58.906 45.833 0.00 0.00 0.00 3.79
18 19 5.862860 GTGCTAGTAGTAACAAGTGGTCTTC 59.137 44.000 0.00 0.00 0.00 2.87
19 20 5.303589 TGTGCTAGTAGTAACAAGTGGTCTT 59.696 40.000 0.00 0.00 0.00 3.01
20 21 4.831155 TGTGCTAGTAGTAACAAGTGGTCT 59.169 41.667 0.00 0.00 0.00 3.85
21 22 4.922103 GTGTGCTAGTAGTAACAAGTGGTC 59.078 45.833 8.77 0.00 0.00 4.02
22 23 4.558095 CGTGTGCTAGTAGTAACAAGTGGT 60.558 45.833 8.77 0.00 0.00 4.16
23 24 3.918591 CGTGTGCTAGTAGTAACAAGTGG 59.081 47.826 8.77 0.00 0.00 4.00
24 25 4.790878 TCGTGTGCTAGTAGTAACAAGTG 58.209 43.478 15.30 8.03 0.00 3.16
25 26 5.640189 ATCGTGTGCTAGTAGTAACAAGT 57.360 39.130 15.30 6.03 0.00 3.16
26 27 6.691818 CCTTATCGTGTGCTAGTAGTAACAAG 59.308 42.308 8.77 10.46 0.00 3.16
27 28 6.375174 TCCTTATCGTGTGCTAGTAGTAACAA 59.625 38.462 8.77 0.00 0.00 2.83
28 29 5.882000 TCCTTATCGTGTGCTAGTAGTAACA 59.118 40.000 0.00 1.66 0.00 2.41
29 30 6.197981 GTCCTTATCGTGTGCTAGTAGTAAC 58.802 44.000 0.00 0.00 0.00 2.50
30 31 5.007039 CGTCCTTATCGTGTGCTAGTAGTAA 59.993 44.000 0.00 0.00 0.00 2.24
31 32 4.509230 CGTCCTTATCGTGTGCTAGTAGTA 59.491 45.833 0.00 0.00 0.00 1.82
32 33 3.311871 CGTCCTTATCGTGTGCTAGTAGT 59.688 47.826 0.00 0.00 0.00 2.73
33 34 3.303857 CCGTCCTTATCGTGTGCTAGTAG 60.304 52.174 0.00 0.00 0.00 2.57
34 35 2.615447 CCGTCCTTATCGTGTGCTAGTA 59.385 50.000 0.00 0.00 0.00 1.82
35 36 1.404391 CCGTCCTTATCGTGTGCTAGT 59.596 52.381 0.00 0.00 0.00 2.57
36 37 1.864435 GCCGTCCTTATCGTGTGCTAG 60.864 57.143 0.00 0.00 0.00 3.42
37 38 0.101759 GCCGTCCTTATCGTGTGCTA 59.898 55.000 0.00 0.00 0.00 3.49
38 39 1.153628 GCCGTCCTTATCGTGTGCT 60.154 57.895 0.00 0.00 0.00 4.40
39 40 2.171725 GGCCGTCCTTATCGTGTGC 61.172 63.158 0.00 0.00 0.00 4.57
40 41 1.515954 AGGCCGTCCTTATCGTGTG 59.484 57.895 0.00 0.00 40.66 3.82
41 42 4.029472 AGGCCGTCCTTATCGTGT 57.971 55.556 0.00 0.00 40.66 4.49
57 58 1.470098 CCTTGATGACCTTTCCGCAAG 59.530 52.381 0.00 0.00 34.24 4.01
58 59 1.073125 TCCTTGATGACCTTTCCGCAA 59.927 47.619 0.00 0.00 0.00 4.85
59 60 0.690192 TCCTTGATGACCTTTCCGCA 59.310 50.000 0.00 0.00 0.00 5.69
60 61 1.087501 GTCCTTGATGACCTTTCCGC 58.912 55.000 0.00 0.00 0.00 5.54
61 62 1.067142 TCGTCCTTGATGACCTTTCCG 60.067 52.381 0.00 0.00 31.35 4.30
62 63 2.347731 GTCGTCCTTGATGACCTTTCC 58.652 52.381 5.34 0.00 41.25 3.13
63 64 1.993370 CGTCGTCCTTGATGACCTTTC 59.007 52.381 10.07 0.00 43.36 2.62
64 65 1.939838 GCGTCGTCCTTGATGACCTTT 60.940 52.381 10.07 0.00 43.36 3.11
65 66 0.389948 GCGTCGTCCTTGATGACCTT 60.390 55.000 10.07 0.00 43.36 3.50
66 67 1.215647 GCGTCGTCCTTGATGACCT 59.784 57.895 10.07 0.00 43.36 3.85
67 68 0.802607 GAGCGTCGTCCTTGATGACC 60.803 60.000 10.07 4.53 43.36 4.02
68 69 1.134530 CGAGCGTCGTCCTTGATGAC 61.135 60.000 6.41 6.41 42.99 3.06
69 70 1.136774 CGAGCGTCGTCCTTGATGA 59.863 57.895 0.00 0.00 34.72 2.92
70 71 1.874019 CCGAGCGTCGTCCTTGATG 60.874 63.158 0.00 0.00 38.40 3.07
71 72 2.490217 CCGAGCGTCGTCCTTGAT 59.510 61.111 0.00 0.00 38.40 2.57
72 73 3.744719 CCCGAGCGTCGTCCTTGA 61.745 66.667 0.00 0.00 38.40 3.02
95 96 1.452833 CCTTAGCCCAGGCAGAAGC 60.453 63.158 12.03 0.00 44.88 3.86
96 97 0.107459 GTCCTTAGCCCAGGCAGAAG 60.107 60.000 12.03 13.03 44.88 2.85
97 98 0.840288 TGTCCTTAGCCCAGGCAGAA 60.840 55.000 12.03 3.70 44.88 3.02
98 99 0.621571 ATGTCCTTAGCCCAGGCAGA 60.622 55.000 12.03 0.00 44.88 4.26
99 100 0.257039 AATGTCCTTAGCCCAGGCAG 59.743 55.000 12.03 0.00 44.88 4.85
100 101 0.034186 CAATGTCCTTAGCCCAGGCA 60.034 55.000 12.03 0.00 44.88 4.75
101 102 1.387295 GCAATGTCCTTAGCCCAGGC 61.387 60.000 0.00 0.00 42.33 4.85
102 103 0.034186 TGCAATGTCCTTAGCCCAGG 60.034 55.000 0.00 0.00 34.86 4.45
103 104 1.838112 TTGCAATGTCCTTAGCCCAG 58.162 50.000 0.00 0.00 0.00 4.45
104 105 1.892474 GTTTGCAATGTCCTTAGCCCA 59.108 47.619 0.00 0.00 0.00 5.36
105 106 2.171003 AGTTTGCAATGTCCTTAGCCC 58.829 47.619 0.00 0.00 0.00 5.19
106 107 3.942130 AAGTTTGCAATGTCCTTAGCC 57.058 42.857 0.00 0.00 0.00 3.93
107 108 5.289434 GCATAAAGTTTGCAATGTCCTTAGC 59.711 40.000 0.00 3.23 39.90 3.09
108 109 5.807011 GGCATAAAGTTTGCAATGTCCTTAG 59.193 40.000 0.00 0.00 41.95 2.18
109 110 5.480073 AGGCATAAAGTTTGCAATGTCCTTA 59.520 36.000 0.00 0.00 41.95 2.69
110 111 4.284234 AGGCATAAAGTTTGCAATGTCCTT 59.716 37.500 0.00 0.00 41.95 3.36
111 112 3.834231 AGGCATAAAGTTTGCAATGTCCT 59.166 39.130 0.00 3.06 41.95 3.85
112 113 4.176271 GAGGCATAAAGTTTGCAATGTCC 58.824 43.478 0.00 0.72 41.95 4.02
113 114 4.176271 GGAGGCATAAAGTTTGCAATGTC 58.824 43.478 0.00 0.00 41.95 3.06
114 115 3.055891 GGGAGGCATAAAGTTTGCAATGT 60.056 43.478 0.00 0.00 41.95 2.71
115 116 3.196254 AGGGAGGCATAAAGTTTGCAATG 59.804 43.478 0.00 0.00 41.95 2.82
116 117 3.196254 CAGGGAGGCATAAAGTTTGCAAT 59.804 43.478 0.00 0.00 41.95 3.56
117 118 2.562298 CAGGGAGGCATAAAGTTTGCAA 59.438 45.455 0.00 0.00 41.95 4.08
118 119 2.170166 CAGGGAGGCATAAAGTTTGCA 58.830 47.619 0.00 0.00 41.95 4.08
119 120 2.446435 TCAGGGAGGCATAAAGTTTGC 58.554 47.619 0.00 0.00 39.41 3.68
120 121 4.019174 ACATCAGGGAGGCATAAAGTTTG 58.981 43.478 0.00 0.00 0.00 2.93
121 122 4.019174 CACATCAGGGAGGCATAAAGTTT 58.981 43.478 0.00 0.00 0.00 2.66
122 123 3.010584 ACACATCAGGGAGGCATAAAGTT 59.989 43.478 0.00 0.00 0.00 2.66
123 124 2.578021 ACACATCAGGGAGGCATAAAGT 59.422 45.455 0.00 0.00 0.00 2.66
124 125 3.287867 ACACATCAGGGAGGCATAAAG 57.712 47.619 0.00 0.00 0.00 1.85
125 126 4.037222 TCTACACATCAGGGAGGCATAAA 58.963 43.478 0.00 0.00 0.00 1.40
126 127 3.653164 TCTACACATCAGGGAGGCATAA 58.347 45.455 0.00 0.00 0.00 1.90
127 128 3.328535 TCTACACATCAGGGAGGCATA 57.671 47.619 0.00 0.00 0.00 3.14
128 129 2.180946 TCTACACATCAGGGAGGCAT 57.819 50.000 0.00 0.00 0.00 4.40
129 130 2.180946 ATCTACACATCAGGGAGGCA 57.819 50.000 0.00 0.00 0.00 4.75
130 131 2.028567 GCTATCTACACATCAGGGAGGC 60.029 54.545 0.00 0.00 0.00 4.70
131 132 3.505386 AGCTATCTACACATCAGGGAGG 58.495 50.000 0.00 0.00 0.00 4.30
132 133 4.704540 CCTAGCTATCTACACATCAGGGAG 59.295 50.000 0.00 0.00 0.00 4.30
133 134 4.106502 ACCTAGCTATCTACACATCAGGGA 59.893 45.833 0.00 0.00 0.00 4.20
134 135 4.411927 ACCTAGCTATCTACACATCAGGG 58.588 47.826 0.00 0.00 0.00 4.45
135 136 5.279206 CCAACCTAGCTATCTACACATCAGG 60.279 48.000 0.00 0.00 0.00 3.86
136 137 5.279206 CCCAACCTAGCTATCTACACATCAG 60.279 48.000 0.00 0.00 0.00 2.90
137 138 4.588951 CCCAACCTAGCTATCTACACATCA 59.411 45.833 0.00 0.00 0.00 3.07
138 139 4.021016 CCCCAACCTAGCTATCTACACATC 60.021 50.000 0.00 0.00 0.00 3.06
139 140 3.904339 CCCCAACCTAGCTATCTACACAT 59.096 47.826 0.00 0.00 0.00 3.21
140 141 3.305720 CCCCAACCTAGCTATCTACACA 58.694 50.000 0.00 0.00 0.00 3.72
141 142 2.037381 GCCCCAACCTAGCTATCTACAC 59.963 54.545 0.00 0.00 0.00 2.90
142 143 2.326428 GCCCCAACCTAGCTATCTACA 58.674 52.381 0.00 0.00 0.00 2.74
143 144 1.624312 GGCCCCAACCTAGCTATCTAC 59.376 57.143 0.00 0.00 0.00 2.59
144 145 1.826042 CGGCCCCAACCTAGCTATCTA 60.826 57.143 0.00 0.00 0.00 1.98
145 146 1.122019 CGGCCCCAACCTAGCTATCT 61.122 60.000 0.00 0.00 0.00 1.98
146 147 1.119574 TCGGCCCCAACCTAGCTATC 61.120 60.000 0.00 0.00 0.00 2.08
147 148 1.074775 TCGGCCCCAACCTAGCTAT 60.075 57.895 0.00 0.00 0.00 2.97
148 149 1.760875 CTCGGCCCCAACCTAGCTA 60.761 63.158 0.00 0.00 0.00 3.32
149 150 3.083997 CTCGGCCCCAACCTAGCT 61.084 66.667 0.00 0.00 0.00 3.32
150 151 4.858680 GCTCGGCCCCAACCTAGC 62.859 72.222 0.00 0.00 40.81 3.42
151 152 3.399181 TGCTCGGCCCCAACCTAG 61.399 66.667 0.00 0.00 0.00 3.02
152 153 3.712907 GTGCTCGGCCCCAACCTA 61.713 66.667 0.00 0.00 0.00 3.08
161 162 2.056906 AATAGATGGGGGTGCTCGGC 62.057 60.000 0.00 0.00 0.00 5.54
162 163 0.035458 GAATAGATGGGGGTGCTCGG 59.965 60.000 0.00 0.00 0.00 4.63
163 164 1.051812 AGAATAGATGGGGGTGCTCG 58.948 55.000 0.00 0.00 0.00 5.03
164 165 1.544314 GCAGAATAGATGGGGGTGCTC 60.544 57.143 0.00 0.00 0.00 4.26
165 166 0.475906 GCAGAATAGATGGGGGTGCT 59.524 55.000 0.00 0.00 0.00 4.40
166 167 0.475906 AGCAGAATAGATGGGGGTGC 59.524 55.000 0.00 0.00 0.00 5.01
167 168 1.770658 TGAGCAGAATAGATGGGGGTG 59.229 52.381 0.00 0.00 0.00 4.61
168 169 2.196742 TGAGCAGAATAGATGGGGGT 57.803 50.000 0.00 0.00 0.00 4.95
169 170 2.374504 ACATGAGCAGAATAGATGGGGG 59.625 50.000 0.00 0.00 0.00 5.40
170 171 3.784511 ACATGAGCAGAATAGATGGGG 57.215 47.619 0.00 0.00 0.00 4.96
171 172 4.040829 TGGTACATGAGCAGAATAGATGGG 59.959 45.833 0.00 0.00 0.00 4.00
172 173 4.993584 GTGGTACATGAGCAGAATAGATGG 59.006 45.833 0.00 0.00 44.52 3.51
173 174 5.851720 AGTGGTACATGAGCAGAATAGATG 58.148 41.667 0.00 0.00 44.52 2.90
174 175 6.491714 AAGTGGTACATGAGCAGAATAGAT 57.508 37.500 0.00 0.00 44.52 1.98
175 176 5.939764 AAGTGGTACATGAGCAGAATAGA 57.060 39.130 0.00 0.00 44.52 1.98
176 177 5.525378 GGAAAGTGGTACATGAGCAGAATAG 59.475 44.000 0.00 0.00 44.52 1.73
177 178 5.428253 GGAAAGTGGTACATGAGCAGAATA 58.572 41.667 0.00 0.00 44.52 1.75
178 179 4.265073 GGAAAGTGGTACATGAGCAGAAT 58.735 43.478 0.00 0.00 44.52 2.40
179 180 3.559171 GGGAAAGTGGTACATGAGCAGAA 60.559 47.826 0.00 0.00 44.52 3.02
180 181 2.027192 GGGAAAGTGGTACATGAGCAGA 60.027 50.000 0.00 0.00 44.52 4.26
181 182 2.290260 TGGGAAAGTGGTACATGAGCAG 60.290 50.000 0.00 0.00 44.52 4.24
182 183 1.702401 TGGGAAAGTGGTACATGAGCA 59.298 47.619 0.00 0.00 44.52 4.26
183 184 2.084546 GTGGGAAAGTGGTACATGAGC 58.915 52.381 0.00 0.00 44.52 4.26
184 185 2.346803 CGTGGGAAAGTGGTACATGAG 58.653 52.381 0.00 0.00 44.52 2.90
185 186 1.609580 GCGTGGGAAAGTGGTACATGA 60.610 52.381 0.00 0.00 44.52 3.07
186 187 0.802494 GCGTGGGAAAGTGGTACATG 59.198 55.000 0.00 0.00 44.52 3.21
187 188 0.322187 GGCGTGGGAAAGTGGTACAT 60.322 55.000 0.00 0.00 44.52 2.29
188 189 1.071814 GGCGTGGGAAAGTGGTACA 59.928 57.895 0.00 0.00 0.00 2.90
189 190 0.535553 TTGGCGTGGGAAAGTGGTAC 60.536 55.000 0.00 0.00 0.00 3.34
190 191 0.535553 GTTGGCGTGGGAAAGTGGTA 60.536 55.000 0.00 0.00 0.00 3.25
191 192 1.826487 GTTGGCGTGGGAAAGTGGT 60.826 57.895 0.00 0.00 0.00 4.16
192 193 0.250553 TAGTTGGCGTGGGAAAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
193 194 1.468520 CATAGTTGGCGTGGGAAAGTG 59.531 52.381 0.00 0.00 0.00 3.16
194 195 1.821216 CATAGTTGGCGTGGGAAAGT 58.179 50.000 0.00 0.00 0.00 2.66
195 196 0.451783 GCATAGTTGGCGTGGGAAAG 59.548 55.000 0.00 0.00 0.00 2.62
196 197 2.562125 GCATAGTTGGCGTGGGAAA 58.438 52.632 0.00 0.00 0.00 3.13
197 198 4.312052 GCATAGTTGGCGTGGGAA 57.688 55.556 0.00 0.00 0.00 3.97
204 205 0.738412 ACCACGTACGCATAGTTGGC 60.738 55.000 16.72 0.00 32.74 4.52
205 206 2.565210 TACCACGTACGCATAGTTGG 57.435 50.000 16.72 16.45 35.04 3.77
206 207 3.922240 ACTTTACCACGTACGCATAGTTG 59.078 43.478 16.72 4.65 0.00 3.16
207 208 3.922240 CACTTTACCACGTACGCATAGTT 59.078 43.478 16.72 0.00 0.00 2.24
208 209 3.191162 TCACTTTACCACGTACGCATAGT 59.809 43.478 16.72 10.05 0.00 2.12
209 210 3.761657 TCACTTTACCACGTACGCATAG 58.238 45.455 16.72 6.99 0.00 2.23
210 211 3.846423 TCACTTTACCACGTACGCATA 57.154 42.857 16.72 2.17 0.00 3.14
211 212 2.728690 TCACTTTACCACGTACGCAT 57.271 45.000 16.72 3.26 0.00 4.73
212 213 2.728690 ATCACTTTACCACGTACGCA 57.271 45.000 16.72 0.00 0.00 5.24
213 214 2.854185 GGTATCACTTTACCACGTACGC 59.146 50.000 16.72 0.00 41.18 4.42
214 215 3.438360 GGGTATCACTTTACCACGTACG 58.562 50.000 15.01 15.01 42.96 3.67
215 216 3.119495 ACGGGTATCACTTTACCACGTAC 60.119 47.826 12.36 0.00 42.27 3.67
216 217 3.088532 ACGGGTATCACTTTACCACGTA 58.911 45.455 12.36 0.00 42.27 3.57
217 218 1.895131 ACGGGTATCACTTTACCACGT 59.105 47.619 9.73 9.73 42.96 4.49
218 219 2.264813 CACGGGTATCACTTTACCACG 58.735 52.381 3.29 6.51 42.96 4.94
219 220 3.323751 ACACGGGTATCACTTTACCAC 57.676 47.619 0.00 0.00 42.96 4.16
220 221 5.680594 ATTACACGGGTATCACTTTACCA 57.319 39.130 0.00 0.00 42.96 3.25
221 222 6.257193 CAGAATTACACGGGTATCACTTTACC 59.743 42.308 0.00 0.00 40.86 2.85
222 223 6.815142 ACAGAATTACACGGGTATCACTTTAC 59.185 38.462 0.00 0.00 0.00 2.01
223 224 6.938507 ACAGAATTACACGGGTATCACTTTA 58.061 36.000 0.00 0.00 0.00 1.85
224 225 5.801380 ACAGAATTACACGGGTATCACTTT 58.199 37.500 0.00 0.00 0.00 2.66
225 226 5.046878 TGACAGAATTACACGGGTATCACTT 60.047 40.000 0.00 0.00 0.00 3.16
226 227 4.464951 TGACAGAATTACACGGGTATCACT 59.535 41.667 0.00 0.00 0.00 3.41
227 228 4.565564 GTGACAGAATTACACGGGTATCAC 59.434 45.833 10.32 10.32 0.00 3.06
228 229 4.464951 AGTGACAGAATTACACGGGTATCA 59.535 41.667 0.00 0.00 39.19 2.15
229 230 5.007385 AGTGACAGAATTACACGGGTATC 57.993 43.478 0.00 0.00 39.19 2.24
230 231 4.710375 AGAGTGACAGAATTACACGGGTAT 59.290 41.667 0.00 0.00 39.19 2.73
231 232 4.084287 AGAGTGACAGAATTACACGGGTA 58.916 43.478 0.00 0.00 39.19 3.69
232 233 2.897969 AGAGTGACAGAATTACACGGGT 59.102 45.455 0.00 0.00 39.19 5.28
233 234 3.594603 AGAGTGACAGAATTACACGGG 57.405 47.619 0.00 0.00 39.19 5.28
234 235 4.307432 ACAAGAGTGACAGAATTACACGG 58.693 43.478 0.00 0.00 39.19 4.94
235 236 5.907197 AACAAGAGTGACAGAATTACACG 57.093 39.130 0.00 0.00 39.19 4.49
236 237 7.920738 AGAAAACAAGAGTGACAGAATTACAC 58.079 34.615 0.00 0.00 35.15 2.90
237 238 9.042008 GTAGAAAACAAGAGTGACAGAATTACA 57.958 33.333 0.00 0.00 0.00 2.41
238 239 8.496751 GGTAGAAAACAAGAGTGACAGAATTAC 58.503 37.037 0.00 0.00 0.00 1.89
239 240 8.429641 AGGTAGAAAACAAGAGTGACAGAATTA 58.570 33.333 0.00 0.00 0.00 1.40
240 241 7.283329 AGGTAGAAAACAAGAGTGACAGAATT 58.717 34.615 0.00 0.00 0.00 2.17
241 242 6.831976 AGGTAGAAAACAAGAGTGACAGAAT 58.168 36.000 0.00 0.00 0.00 2.40
242 243 6.235231 AGGTAGAAAACAAGAGTGACAGAA 57.765 37.500 0.00 0.00 0.00 3.02
243 244 5.871396 AGGTAGAAAACAAGAGTGACAGA 57.129 39.130 0.00 0.00 0.00 3.41
244 245 7.378966 TGATAGGTAGAAAACAAGAGTGACAG 58.621 38.462 0.00 0.00 0.00 3.51
245 246 7.297936 TGATAGGTAGAAAACAAGAGTGACA 57.702 36.000 0.00 0.00 0.00 3.58
246 247 8.660373 CATTGATAGGTAGAAAACAAGAGTGAC 58.340 37.037 0.00 0.00 0.00 3.67
247 248 7.824289 CCATTGATAGGTAGAAAACAAGAGTGA 59.176 37.037 0.00 0.00 0.00 3.41
248 249 7.824289 TCCATTGATAGGTAGAAAACAAGAGTG 59.176 37.037 0.00 0.00 0.00 3.51
249 250 7.918076 TCCATTGATAGGTAGAAAACAAGAGT 58.082 34.615 0.00 0.00 0.00 3.24
250 251 8.792830 TTCCATTGATAGGTAGAAAACAAGAG 57.207 34.615 0.00 0.00 0.00 2.85
251 252 9.177608 CATTCCATTGATAGGTAGAAAACAAGA 57.822 33.333 0.00 0.00 0.00 3.02
252 253 9.177608 TCATTCCATTGATAGGTAGAAAACAAG 57.822 33.333 0.00 0.00 0.00 3.16
253 254 9.699410 ATCATTCCATTGATAGGTAGAAAACAA 57.301 29.630 0.00 0.00 34.59 2.83
256 257 9.489084 CGTATCATTCCATTGATAGGTAGAAAA 57.511 33.333 6.17 0.00 38.83 2.29
257 258 7.602644 GCGTATCATTCCATTGATAGGTAGAAA 59.397 37.037 12.85 0.00 42.39 2.52
258 259 7.097192 GCGTATCATTCCATTGATAGGTAGAA 58.903 38.462 12.85 0.00 42.39 2.10
259 260 6.210584 TGCGTATCATTCCATTGATAGGTAGA 59.789 38.462 12.85 0.00 42.39 2.59
260 261 6.398095 TGCGTATCATTCCATTGATAGGTAG 58.602 40.000 12.85 1.44 42.39 3.18
261 262 6.353404 TGCGTATCATTCCATTGATAGGTA 57.647 37.500 12.85 7.89 42.39 3.08
262 263 5.227569 TGCGTATCATTCCATTGATAGGT 57.772 39.130 12.85 0.00 42.39 3.08
263 264 6.111382 AGATGCGTATCATTCCATTGATAGG 58.889 40.000 16.11 8.89 42.88 2.57
264 265 7.461918 CAAGATGCGTATCATTCCATTGATAG 58.538 38.462 16.11 0.00 38.83 2.08
265 266 6.128200 GCAAGATGCGTATCATTCCATTGATA 60.128 38.462 16.11 0.00 34.16 2.15
266 267 5.335426 GCAAGATGCGTATCATTCCATTGAT 60.335 40.000 16.11 0.00 35.50 2.57
267 268 4.023792 GCAAGATGCGTATCATTCCATTGA 60.024 41.667 16.11 0.00 35.05 2.57
268 269 4.224433 GCAAGATGCGTATCATTCCATTG 58.776 43.478 16.11 10.67 35.05 2.82
269 270 4.494350 GCAAGATGCGTATCATTCCATT 57.506 40.909 16.11 0.00 35.05 3.16
290 291 5.005012 TGTCCTTATCTTTTTCGCGAATACG 59.995 40.000 24.05 15.60 42.93 3.06
291 292 6.340537 TGTCCTTATCTTTTTCGCGAATAC 57.659 37.500 24.05 2.87 0.00 1.89
292 293 6.369340 TGTTGTCCTTATCTTTTTCGCGAATA 59.631 34.615 24.05 15.77 0.00 1.75
293 294 5.180492 TGTTGTCCTTATCTTTTTCGCGAAT 59.820 36.000 24.05 9.92 0.00 3.34
294 295 4.512198 TGTTGTCCTTATCTTTTTCGCGAA 59.488 37.500 19.38 19.38 0.00 4.70
295 296 4.059511 TGTTGTCCTTATCTTTTTCGCGA 58.940 39.130 3.71 3.71 0.00 5.87
296 297 4.148891 GTGTTGTCCTTATCTTTTTCGCG 58.851 43.478 0.00 0.00 0.00 5.87
297 298 4.148891 CGTGTTGTCCTTATCTTTTTCGC 58.851 43.478 0.00 0.00 0.00 4.70
298 299 4.212636 ACCGTGTTGTCCTTATCTTTTTCG 59.787 41.667 0.00 0.00 0.00 3.46
299 300 5.684550 ACCGTGTTGTCCTTATCTTTTTC 57.315 39.130 0.00 0.00 0.00 2.29
300 301 5.180680 GCTACCGTGTTGTCCTTATCTTTTT 59.819 40.000 0.00 0.00 0.00 1.94
301 302 4.694037 GCTACCGTGTTGTCCTTATCTTTT 59.306 41.667 0.00 0.00 0.00 2.27
302 303 4.020485 AGCTACCGTGTTGTCCTTATCTTT 60.020 41.667 0.00 0.00 0.00 2.52
303 304 3.514309 AGCTACCGTGTTGTCCTTATCTT 59.486 43.478 0.00 0.00 0.00 2.40
304 305 3.097614 AGCTACCGTGTTGTCCTTATCT 58.902 45.455 0.00 0.00 0.00 1.98
312 313 4.583871 AGTAGTAGTAGCTACCGTGTTGT 58.416 43.478 20.31 2.53 41.54 3.32
320 321 9.553418 GTGACAAACTTTAGTAGTAGTAGCTAC 57.447 37.037 16.43 16.43 41.07 3.58
372 379 1.028868 GGTCTTGGCTGAGTCATGGC 61.029 60.000 0.00 0.00 0.00 4.40
382 389 2.591715 GTGCACGTGGTCTTGGCT 60.592 61.111 18.88 0.00 0.00 4.75
427 435 3.900966 ATCTTGAGCTATGTCTGTGCA 57.099 42.857 0.00 0.00 0.00 4.57
432 440 8.972127 TGTTAAGAGTAATCTTGAGCTATGTCT 58.028 33.333 15.45 0.00 0.00 3.41
481 489 0.459237 AAGATGAAGGCGAGAGTGCG 60.459 55.000 0.00 0.00 35.06 5.34
486 494 1.852633 TCTGGAAGATGAAGGCGAGA 58.147 50.000 0.00 0.00 38.67 4.04
595 603 0.878523 CATGGTGCGGGTACGTATGG 60.879 60.000 0.00 0.00 43.45 2.74
598 606 1.215912 CACATGGTGCGGGTACGTA 59.784 57.895 0.00 0.00 43.45 3.57
640 648 0.944311 TTTCACGAGCGCCTTGTCTC 60.944 55.000 2.29 0.00 0.00 3.36
648 656 1.859135 GCAACGATTTCACGAGCGC 60.859 57.895 0.00 0.00 37.03 5.92
859 931 1.446907 GTCCATGTGGAGTTCTGCAG 58.553 55.000 7.63 7.63 46.49 4.41
865 937 1.275666 TCCATCGTCCATGTGGAGTT 58.724 50.000 1.07 0.00 46.49 3.01
956 1043 0.175760 CGAAGCAGGCCAGCTAGTTA 59.824 55.000 24.40 0.00 45.89 2.24
957 1044 1.078848 CGAAGCAGGCCAGCTAGTT 60.079 57.895 24.40 7.94 45.89 2.24
2054 2224 2.744768 GCTTTCTTGAGGCTCGCCG 61.745 63.158 10.42 0.50 41.95 6.46
2079 2249 1.142778 GCATTCACGCCTCGTCTCTC 61.143 60.000 0.00 0.00 38.32 3.20
2148 2318 8.801715 TTTCAGACAAAGATAAGCAAATTCAC 57.198 30.769 0.00 0.00 0.00 3.18
2180 2350 4.441079 GCATGAGCAGATAAGCAAATTGGT 60.441 41.667 0.00 0.00 41.58 3.67
2181 2351 4.049186 GCATGAGCAGATAAGCAAATTGG 58.951 43.478 0.00 0.00 41.58 3.16
2310 2481 5.120208 GTCAGCAATTTAAGCTCTTGTACGA 59.880 40.000 0.00 0.00 41.14 3.43
2349 2870 1.478510 TGGGAAGCGTCATCTCTTCTC 59.521 52.381 1.14 0.00 39.59 2.87
2364 2886 1.218047 CTCGTCTGCGGAATGGGAA 59.782 57.895 0.00 0.00 38.89 3.97
2365 2887 2.721167 CCTCGTCTGCGGAATGGGA 61.721 63.158 0.00 0.00 38.89 4.37
2379 2901 1.664659 CAAAGCATGAAGAGAGCCTCG 59.335 52.381 0.00 0.00 35.36 4.63
2482 3005 6.198650 AGCAAACCGGTTAATTTATACCAC 57.801 37.500 22.60 0.00 33.94 4.16
2483 3006 7.934855 TTAGCAAACCGGTTAATTTATACCA 57.065 32.000 22.60 0.00 33.94 3.25
2497 3020 2.798283 TCGACAGAGTTTTAGCAAACCG 59.202 45.455 0.00 0.00 43.08 4.44
2521 3044 9.360093 CTGTCGACTAAGACTTGATTAAATCTT 57.640 33.333 17.92 0.00 41.47 2.40
2522 3045 8.740906 TCTGTCGACTAAGACTTGATTAAATCT 58.259 33.333 17.92 0.00 41.47 2.40
2523 3046 8.912787 TCTGTCGACTAAGACTTGATTAAATC 57.087 34.615 17.92 0.00 41.47 2.17
2524 3047 8.740906 TCTCTGTCGACTAAGACTTGATTAAAT 58.259 33.333 17.92 0.00 41.47 1.40
2525 3048 8.107399 TCTCTGTCGACTAAGACTTGATTAAA 57.893 34.615 17.92 0.00 41.47 1.52
2526 3049 7.683437 TCTCTGTCGACTAAGACTTGATTAA 57.317 36.000 17.92 0.00 41.47 1.40
2527 3050 7.867305 ATCTCTGTCGACTAAGACTTGATTA 57.133 36.000 17.92 0.00 41.47 1.75
2528 3051 6.767524 ATCTCTGTCGACTAAGACTTGATT 57.232 37.500 17.92 0.93 41.47 2.57
2529 3052 6.767524 AATCTCTGTCGACTAAGACTTGAT 57.232 37.500 17.92 8.39 41.47 2.57
2530 3053 6.576662 AAATCTCTGTCGACTAAGACTTGA 57.423 37.500 17.92 6.47 41.47 3.02
2531 3054 7.273815 GGTTAAATCTCTGTCGACTAAGACTTG 59.726 40.741 17.92 1.10 41.47 3.16
2532 3055 7.039923 TGGTTAAATCTCTGTCGACTAAGACTT 60.040 37.037 17.92 16.26 41.47 3.01
2533 3056 6.433404 TGGTTAAATCTCTGTCGACTAAGACT 59.567 38.462 17.92 6.51 41.47 3.24
2534 3057 6.618811 TGGTTAAATCTCTGTCGACTAAGAC 58.381 40.000 17.92 7.39 41.30 3.01
2535 3058 6.829229 TGGTTAAATCTCTGTCGACTAAGA 57.171 37.500 17.92 18.25 0.00 2.10
2536 3059 7.091443 ACTTGGTTAAATCTCTGTCGACTAAG 58.909 38.462 17.92 13.59 32.57 2.18
2537 3060 6.989659 ACTTGGTTAAATCTCTGTCGACTAA 58.010 36.000 17.92 3.65 0.00 2.24
2538 3061 6.349944 GGACTTGGTTAAATCTCTGTCGACTA 60.350 42.308 17.92 4.01 0.00 2.59
2539 3062 5.470047 ACTTGGTTAAATCTCTGTCGACT 57.530 39.130 17.92 0.00 0.00 4.18
2540 3063 4.626172 GGACTTGGTTAAATCTCTGTCGAC 59.374 45.833 9.11 9.11 0.00 4.20
2541 3064 4.322499 GGGACTTGGTTAAATCTCTGTCGA 60.322 45.833 0.00 0.00 0.00 4.20
2542 3065 3.933332 GGGACTTGGTTAAATCTCTGTCG 59.067 47.826 0.00 0.00 0.00 4.35
2543 3066 4.906618 TGGGACTTGGTTAAATCTCTGTC 58.093 43.478 0.00 0.00 0.00 3.51
2544 3067 4.351111 ACTGGGACTTGGTTAAATCTCTGT 59.649 41.667 0.00 0.00 0.00 3.41
2545 3068 4.911390 ACTGGGACTTGGTTAAATCTCTG 58.089 43.478 0.00 0.00 0.00 3.35
2546 3069 4.322801 CGACTGGGACTTGGTTAAATCTCT 60.323 45.833 0.00 0.00 0.00 3.10
2573 3096 4.137116 TGCAAAGATCTAACGGCTATGT 57.863 40.909 0.00 0.00 0.00 2.29
2581 3104 7.699812 GGACAAATCTTCATGCAAAGATCTAAC 59.300 37.037 12.85 6.84 43.53 2.34
2582 3105 7.613022 AGGACAAATCTTCATGCAAAGATCTAA 59.387 33.333 12.85 0.00 43.53 2.10
2583 3106 7.066645 CAGGACAAATCTTCATGCAAAGATCTA 59.933 37.037 12.85 0.00 43.53 1.98
2584 3107 5.950549 AGGACAAATCTTCATGCAAAGATCT 59.049 36.000 12.85 4.40 43.53 2.75
2633 3161 4.736168 GCAAACAGTGGTACAAAATGCTGA 60.736 41.667 0.00 0.00 44.16 4.26
2667 3195 1.482182 ACAGATGCTGCAACCGATAGA 59.518 47.619 6.36 0.00 34.37 1.98
2671 3199 0.035317 AAGACAGATGCTGCAACCGA 59.965 50.000 6.36 0.00 34.37 4.69
2691 3219 1.072015 AGGGCAGATGCTAGAATCAGC 59.928 52.381 17.77 17.77 42.15 4.26
2718 3269 0.384309 GATGGGACGACATGCTACGA 59.616 55.000 12.96 0.00 0.00 3.43
2719 3270 0.934901 CGATGGGACGACATGCTACG 60.935 60.000 0.00 0.00 35.09 3.51
2726 3277 1.904378 TGTGACCGATGGGACGACA 60.904 57.895 0.00 0.00 36.97 4.35
2765 3317 3.558033 ACAACCGTTGGGACTATTTGTT 58.442 40.909 15.60 0.00 36.97 2.83
2766 3318 3.217681 ACAACCGTTGGGACTATTTGT 57.782 42.857 15.60 0.00 36.97 2.83
2769 3329 3.325716 ACACTACAACCGTTGGGACTATT 59.674 43.478 15.60 0.00 36.97 1.73
2789 3349 2.354510 GCTACAAGCAACACAACAGACA 59.645 45.455 0.00 0.00 41.89 3.41
2821 3381 2.874849 CTGCAACCAACGACAAAGTTT 58.125 42.857 0.00 0.00 30.96 2.66
2823 3383 0.100503 GCTGCAACCAACGACAAAGT 59.899 50.000 0.00 0.00 0.00 2.66
2824 3384 0.100325 TGCTGCAACCAACGACAAAG 59.900 50.000 0.00 0.00 0.00 2.77
2828 3388 2.936498 ACTATATGCTGCAACCAACGAC 59.064 45.455 6.36 0.00 0.00 4.34
2829 3389 3.194861 GACTATATGCTGCAACCAACGA 58.805 45.455 6.36 0.00 0.00 3.85
2830 3390 2.935849 TGACTATATGCTGCAACCAACG 59.064 45.455 6.36 0.00 0.00 4.10
2831 3391 3.689161 TGTGACTATATGCTGCAACCAAC 59.311 43.478 6.36 0.01 0.00 3.77
2832 3392 3.949132 TGTGACTATATGCTGCAACCAA 58.051 40.909 6.36 0.00 0.00 3.67
2906 3575 1.676529 TGACTAGATGCTACAGCCGAC 59.323 52.381 0.00 0.00 41.18 4.79
2911 3580 3.740631 TGGCATGACTAGATGCTACAG 57.259 47.619 14.18 0.00 46.74 2.74
2924 3593 4.758688 CTGTAGTGTTATGAGTGGCATGA 58.241 43.478 0.00 0.00 37.87 3.07
2926 3595 3.198635 AGCTGTAGTGTTATGAGTGGCAT 59.801 43.478 0.00 0.00 41.08 4.40
2935 3604 7.869937 GTGACATCATCATAGCTGTAGTGTTAT 59.130 37.037 0.00 0.00 40.28 1.89
2985 3654 9.092338 TGGGTTTGTTTATAACTCACTCTACTA 57.908 33.333 0.00 0.00 31.29 1.82
2989 3658 8.706322 ATTTGGGTTTGTTTATAACTCACTCT 57.294 30.769 0.00 0.00 35.80 3.24
3006 3675 9.603921 GATCAATGAAACATCATAATTTGGGTT 57.396 29.630 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.