Multiple sequence alignment - TraesCS7B01G342100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G342100 chr7B 100.000 3853 0 0 1 3853 597189110 597185258 0.000000e+00 7116
1 TraesCS7B01G342100 chr7B 83.452 701 91 16 1 687 175995089 175995778 2.530000e-176 628
2 TraesCS7B01G342100 chr7D 90.397 2041 140 28 853 2882 552275413 552273418 0.000000e+00 2632
3 TraesCS7B01G342100 chr7D 91.371 846 67 6 2926 3767 552272381 552271538 0.000000e+00 1153
4 TraesCS7B01G342100 chr7A 93.362 1612 92 7 1296 2893 637910802 637909192 0.000000e+00 2370
5 TraesCS7B01G342100 chr7A 91.531 307 25 1 2897 3202 637909150 637908844 4.600000e-114 422
6 TraesCS7B01G342100 chr7A 93.258 267 17 1 3502 3767 637876379 637876113 3.610000e-105 392
7 TraesCS7B01G342100 chr7A 93.182 132 3 1 867 992 637910955 637910824 5.080000e-44 189
8 TraesCS7B01G342100 chr7A 88.298 94 10 1 3149 3242 678144132 678144224 1.130000e-20 111
9 TraesCS7B01G342100 chr3B 90.099 707 45 10 1 687 576019501 576020202 0.000000e+00 894
10 TraesCS7B01G342100 chr3B 87.147 708 69 7 1 686 694177946 694178653 0.000000e+00 784
11 TraesCS7B01G342100 chr3B 83.910 491 55 9 219 686 46088680 46088191 7.590000e-122 448
12 TraesCS7B01G342100 chr3B 78.049 574 110 9 1423 1991 736466271 736466833 7.920000e-92 348
13 TraesCS7B01G342100 chr3B 77.990 577 104 13 1423 1991 736409969 736410530 1.330000e-89 340
14 TraesCS7B01G342100 chr2B 89.235 706 52 8 4 686 349932855 349932151 0.000000e+00 861
15 TraesCS7B01G342100 chr2B 85.048 622 67 8 88 686 727311599 727310981 9.150000e-171 610
16 TraesCS7B01G342100 chr2B 89.655 87 9 0 3157 3243 790607346 790607432 1.130000e-20 111
17 TraesCS7B01G342100 chr6D 86.667 705 72 7 4 686 97771606 97770902 0.000000e+00 761
18 TraesCS7B01G342100 chr6D 85.452 708 71 13 4 686 470970763 470970063 0.000000e+00 708
19 TraesCS7B01G342100 chr6D 78.832 411 69 10 1422 1829 428603720 428604115 1.060000e-65 261
20 TraesCS7B01G342100 chr5D 86.383 705 71 9 5 686 530850944 530850242 0.000000e+00 747
21 TraesCS7B01G342100 chr6B 85.876 708 78 7 1 686 51134992 51135699 0.000000e+00 734
22 TraesCS7B01G342100 chr6B 80.960 604 72 18 94 686 619733404 619732833 4.570000e-119 438
23 TraesCS7B01G342100 chr6B 78.515 377 66 7 1422 1798 644897650 644898011 2.310000e-57 233
24 TraesCS7B01G342100 chr4B 85.674 712 76 6 1 687 428486701 428487411 0.000000e+00 726
25 TraesCS7B01G342100 chr5A 85.532 705 78 7 5 686 654559520 654558817 0.000000e+00 715
26 TraesCS7B01G342100 chr2A 84.965 705 83 6 5 686 532077898 532077194 0.000000e+00 693
27 TraesCS7B01G342100 chr2A 88.214 543 37 7 164 686 671069839 671069304 1.180000e-174 623
28 TraesCS7B01G342100 chr3D 87.102 566 51 7 143 686 581083625 581084190 4.230000e-174 621
29 TraesCS7B01G342100 chr3D 76.501 583 106 21 1421 1991 604837994 604837431 4.870000e-74 289
30 TraesCS7B01G342100 chr3D 75.630 357 45 28 3398 3720 560758153 560757805 5.190000e-29 139
31 TraesCS7B01G342100 chr4A 84.656 567 63 10 143 686 631809176 631808611 9.410000e-151 544
32 TraesCS7B01G342100 chr4A 80.000 275 38 10 3473 3733 666514127 666513856 1.830000e-43 187
33 TraesCS7B01G342100 chr4A 92.045 88 5 1 3157 3244 546636403 546636318 5.230000e-24 122
34 TraesCS7B01G342100 chr4A 90.909 88 6 1 3157 3244 546610336 546610251 2.430000e-22 117
35 TraesCS7B01G342100 chr5B 86.493 422 44 2 4 412 579072685 579072264 5.870000e-123 451
36 TraesCS7B01G342100 chr5B 91.111 90 8 0 3154 3243 403781318 403781407 5.230000e-24 122
37 TraesCS7B01G342100 chr3A 78.966 580 103 11 1426 1997 690905614 690906182 1.010000e-100 377
38 TraesCS7B01G342100 chr3A 81.117 376 58 8 1425 1798 735388046 735387682 4.870000e-74 289
39 TraesCS7B01G342100 chr1A 89.011 91 9 1 3154 3243 405005873 405005963 1.130000e-20 111
40 TraesCS7B01G342100 chr1B 87.912 91 11 0 3155 3245 667639793 667639703 1.460000e-19 108
41 TraesCS7B01G342100 chr4D 86.813 91 8 2 3627 3713 289508388 289508478 8.810000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G342100 chr7B 597185258 597189110 3852 True 7116.000000 7116 100.000000 1 3853 1 chr7B.!!$R1 3852
1 TraesCS7B01G342100 chr7B 175995089 175995778 689 False 628.000000 628 83.452000 1 687 1 chr7B.!!$F1 686
2 TraesCS7B01G342100 chr7D 552271538 552275413 3875 True 1892.500000 2632 90.884000 853 3767 2 chr7D.!!$R1 2914
3 TraesCS7B01G342100 chr7A 637908844 637910955 2111 True 993.666667 2370 92.691667 867 3202 3 chr7A.!!$R2 2335
4 TraesCS7B01G342100 chr3B 576019501 576020202 701 False 894.000000 894 90.099000 1 687 1 chr3B.!!$F1 686
5 TraesCS7B01G342100 chr3B 694177946 694178653 707 False 784.000000 784 87.147000 1 686 1 chr3B.!!$F2 685
6 TraesCS7B01G342100 chr3B 736466271 736466833 562 False 348.000000 348 78.049000 1423 1991 1 chr3B.!!$F4 568
7 TraesCS7B01G342100 chr3B 736409969 736410530 561 False 340.000000 340 77.990000 1423 1991 1 chr3B.!!$F3 568
8 TraesCS7B01G342100 chr2B 349932151 349932855 704 True 861.000000 861 89.235000 4 686 1 chr2B.!!$R1 682
9 TraesCS7B01G342100 chr2B 727310981 727311599 618 True 610.000000 610 85.048000 88 686 1 chr2B.!!$R2 598
10 TraesCS7B01G342100 chr6D 97770902 97771606 704 True 761.000000 761 86.667000 4 686 1 chr6D.!!$R1 682
11 TraesCS7B01G342100 chr6D 470970063 470970763 700 True 708.000000 708 85.452000 4 686 1 chr6D.!!$R2 682
12 TraesCS7B01G342100 chr5D 530850242 530850944 702 True 747.000000 747 86.383000 5 686 1 chr5D.!!$R1 681
13 TraesCS7B01G342100 chr6B 51134992 51135699 707 False 734.000000 734 85.876000 1 686 1 chr6B.!!$F1 685
14 TraesCS7B01G342100 chr6B 619732833 619733404 571 True 438.000000 438 80.960000 94 686 1 chr6B.!!$R1 592
15 TraesCS7B01G342100 chr4B 428486701 428487411 710 False 726.000000 726 85.674000 1 687 1 chr4B.!!$F1 686
16 TraesCS7B01G342100 chr5A 654558817 654559520 703 True 715.000000 715 85.532000 5 686 1 chr5A.!!$R1 681
17 TraesCS7B01G342100 chr2A 532077194 532077898 704 True 693.000000 693 84.965000 5 686 1 chr2A.!!$R1 681
18 TraesCS7B01G342100 chr2A 671069304 671069839 535 True 623.000000 623 88.214000 164 686 1 chr2A.!!$R2 522
19 TraesCS7B01G342100 chr3D 581083625 581084190 565 False 621.000000 621 87.102000 143 686 1 chr3D.!!$F1 543
20 TraesCS7B01G342100 chr3D 604837431 604837994 563 True 289.000000 289 76.501000 1421 1991 1 chr3D.!!$R2 570
21 TraesCS7B01G342100 chr4A 631808611 631809176 565 True 544.000000 544 84.656000 143 686 1 chr4A.!!$R3 543
22 TraesCS7B01G342100 chr3A 690905614 690906182 568 False 377.000000 377 78.966000 1426 1997 1 chr3A.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 518 0.324368 TTCCTCTTAGGCGCTCAGGA 60.324 55.0 7.64 8.26 34.61 3.86 F
502 538 0.324614 TGGATGGTGCATCGACAAGT 59.675 50.0 0.00 0.00 41.35 3.16 F
568 610 0.394938 AGACGTGGTGTATGTGCCAA 59.605 50.0 0.00 0.00 36.41 4.52 F
1037 1092 0.529833 CGCCTTCTCTCTGCTTCTCA 59.470 55.0 0.00 0.00 0.00 3.27 F
1413 1472 0.620556 TCCATGCCTCCCTCTGAAAC 59.379 55.0 0.00 0.00 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2455 0.038455 AGCTGAGGTAGACGGTGTCT 59.962 55.000 4.7 4.7 45.54 3.41 R
2398 2470 1.659601 CTCTCTGCAATGTCGAAGCTG 59.340 52.381 0.0 0.0 0.00 4.24 R
2532 2604 1.405821 GACACCAGATCCGACCAGTAG 59.594 57.143 0.0 0.0 0.00 2.57 R
2681 2761 0.389948 CGAAGCCACAGAGTACCACC 60.390 60.000 0.0 0.0 0.00 4.61 R
2852 2938 0.964358 AGAGGACAAGCAATGGCAGC 60.964 55.000 0.0 0.0 44.61 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 2.224314 GCTTTGCGACTACTTCTGCTTT 59.776 45.455 0.00 0.00 0.00 3.51
63 66 1.077357 TTTGAGTTGTGGTGGCGGT 60.077 52.632 0.00 0.00 0.00 5.68
369 386 2.681778 CTCCTCCGGTGTCTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
482 518 0.324368 TTCCTCTTAGGCGCTCAGGA 60.324 55.000 7.64 8.26 34.61 3.86
493 529 1.225426 GCTCAGGATGGATGGTGCA 59.775 57.895 0.00 0.00 36.16 4.57
502 538 0.324614 TGGATGGTGCATCGACAAGT 59.675 50.000 0.00 0.00 41.35 3.16
554 594 3.720193 CGGTGTCGGTCGAGACGT 61.720 66.667 13.10 0.00 43.70 4.34
560 600 1.301637 TCGGTCGAGACGTGGTGTA 60.302 57.895 0.00 0.00 0.00 2.90
568 610 0.394938 AGACGTGGTGTATGTGCCAA 59.605 50.000 0.00 0.00 36.41 4.52
687 732 3.323243 GCAGCGAGTGGTAGTTTCTTAA 58.677 45.455 0.00 0.00 0.00 1.85
688 733 3.744426 GCAGCGAGTGGTAGTTTCTTAAA 59.256 43.478 0.00 0.00 0.00 1.52
689 734 4.212636 GCAGCGAGTGGTAGTTTCTTAAAA 59.787 41.667 0.00 0.00 0.00 1.52
690 735 5.676953 CAGCGAGTGGTAGTTTCTTAAAAC 58.323 41.667 0.00 0.00 44.24 2.43
691 736 4.753610 AGCGAGTGGTAGTTTCTTAAAACC 59.246 41.667 0.00 0.00 44.87 3.27
692 737 4.753610 GCGAGTGGTAGTTTCTTAAAACCT 59.246 41.667 0.00 0.00 44.87 3.50
693 738 5.237996 GCGAGTGGTAGTTTCTTAAAACCTT 59.762 40.000 0.00 0.00 44.87 3.50
694 739 6.565435 GCGAGTGGTAGTTTCTTAAAACCTTC 60.565 42.308 0.00 0.00 44.87 3.46
695 740 6.704937 CGAGTGGTAGTTTCTTAAAACCTTCT 59.295 38.462 0.00 0.00 44.87 2.85
696 741 7.869429 CGAGTGGTAGTTTCTTAAAACCTTCTA 59.131 37.037 0.00 0.00 44.87 2.10
697 742 9.722184 GAGTGGTAGTTTCTTAAAACCTTCTAT 57.278 33.333 0.00 0.00 44.87 1.98
713 758 9.747293 AAACCTTCTATAAAGCTAAGATACGTC 57.253 33.333 0.00 0.00 0.00 4.34
714 759 8.694581 ACCTTCTATAAAGCTAAGATACGTCT 57.305 34.615 0.00 0.00 35.82 4.18
715 760 8.569641 ACCTTCTATAAAGCTAAGATACGTCTG 58.430 37.037 0.00 0.00 34.13 3.51
716 761 8.784994 CCTTCTATAAAGCTAAGATACGTCTGA 58.215 37.037 0.00 0.00 34.13 3.27
717 762 9.820229 CTTCTATAAAGCTAAGATACGTCTGAG 57.180 37.037 0.00 0.00 36.19 3.35
718 763 8.905660 TCTATAAAGCTAAGATACGTCTGAGT 57.094 34.615 0.00 0.00 35.61 3.41
719 764 8.775527 TCTATAAAGCTAAGATACGTCTGAGTG 58.224 37.037 0.00 0.00 35.61 3.51
720 765 5.646577 AAAGCTAAGATACGTCTGAGTGT 57.353 39.130 0.00 0.00 35.61 3.55
721 766 6.754702 AAAGCTAAGATACGTCTGAGTGTA 57.245 37.500 0.00 0.00 35.61 2.90
722 767 5.738118 AGCTAAGATACGTCTGAGTGTAC 57.262 43.478 0.00 0.00 35.61 2.90
723 768 5.430007 AGCTAAGATACGTCTGAGTGTACT 58.570 41.667 0.00 0.00 35.61 2.73
724 769 5.881443 AGCTAAGATACGTCTGAGTGTACTT 59.119 40.000 0.00 0.00 35.61 2.24
725 770 6.037391 AGCTAAGATACGTCTGAGTGTACTTC 59.963 42.308 0.00 0.00 35.61 3.01
726 771 6.183360 GCTAAGATACGTCTGAGTGTACTTCA 60.183 42.308 0.00 0.00 35.61 3.02
727 772 6.570672 AAGATACGTCTGAGTGTACTTCAA 57.429 37.500 0.00 0.00 34.13 2.69
728 773 6.570672 AGATACGTCTGAGTGTACTTCAAA 57.429 37.500 0.00 0.00 32.13 2.69
729 774 6.613233 AGATACGTCTGAGTGTACTTCAAAG 58.387 40.000 0.00 0.00 32.13 2.77
730 775 4.913335 ACGTCTGAGTGTACTTCAAAGA 57.087 40.909 0.00 0.00 0.00 2.52
731 776 5.258456 ACGTCTGAGTGTACTTCAAAGAA 57.742 39.130 0.00 0.00 0.00 2.52
732 777 5.657474 ACGTCTGAGTGTACTTCAAAGAAA 58.343 37.500 0.00 0.00 0.00 2.52
733 778 6.103997 ACGTCTGAGTGTACTTCAAAGAAAA 58.896 36.000 0.00 0.00 0.00 2.29
734 779 6.592607 ACGTCTGAGTGTACTTCAAAGAAAAA 59.407 34.615 0.00 0.00 0.00 1.94
780 825 9.883142 TTTTCTATTCCTGTGTTTTGAAAATGT 57.117 25.926 0.00 0.00 30.49 2.71
781 826 9.883142 TTTCTATTCCTGTGTTTTGAAAATGTT 57.117 25.926 0.00 0.00 0.00 2.71
782 827 9.528018 TTCTATTCCTGTGTTTTGAAAATGTTC 57.472 29.630 0.00 0.00 0.00 3.18
783 828 8.141268 TCTATTCCTGTGTTTTGAAAATGTTCC 58.859 33.333 0.00 0.00 32.28 3.62
784 829 4.677584 TCCTGTGTTTTGAAAATGTTCCG 58.322 39.130 0.00 0.00 32.28 4.30
785 830 4.399618 TCCTGTGTTTTGAAAATGTTCCGA 59.600 37.500 0.00 0.00 32.28 4.55
786 831 5.105716 TCCTGTGTTTTGAAAATGTTCCGAA 60.106 36.000 0.00 0.00 32.28 4.30
787 832 5.752955 CCTGTGTTTTGAAAATGTTCCGAAT 59.247 36.000 0.00 0.00 32.28 3.34
788 833 6.074356 CCTGTGTTTTGAAAATGTTCCGAATC 60.074 38.462 0.00 0.00 32.28 2.52
789 834 6.333416 TGTGTTTTGAAAATGTTCCGAATCA 58.667 32.000 0.00 0.00 32.28 2.57
790 835 6.813649 TGTGTTTTGAAAATGTTCCGAATCAA 59.186 30.769 0.00 0.00 32.28 2.57
791 836 7.331934 TGTGTTTTGAAAATGTTCCGAATCAAA 59.668 29.630 0.00 3.70 35.63 2.69
792 837 7.845622 GTGTTTTGAAAATGTTCCGAATCAAAG 59.154 33.333 0.00 0.00 37.86 2.77
793 838 7.761704 TGTTTTGAAAATGTTCCGAATCAAAGA 59.238 29.630 0.00 0.00 37.86 2.52
794 839 7.928908 TTTGAAAATGTTCCGAATCAAAGAG 57.071 32.000 3.70 0.00 33.32 2.85
795 840 6.875948 TGAAAATGTTCCGAATCAAAGAGA 57.124 33.333 0.00 0.00 32.28 3.10
796 841 6.668323 TGAAAATGTTCCGAATCAAAGAGAC 58.332 36.000 0.00 0.00 32.28 3.36
797 842 5.629079 AAATGTTCCGAATCAAAGAGACC 57.371 39.130 0.00 0.00 0.00 3.85
798 843 3.053831 TGTTCCGAATCAAAGAGACCC 57.946 47.619 0.00 0.00 0.00 4.46
799 844 2.370519 TGTTCCGAATCAAAGAGACCCA 59.629 45.455 0.00 0.00 0.00 4.51
800 845 3.181449 TGTTCCGAATCAAAGAGACCCAA 60.181 43.478 0.00 0.00 0.00 4.12
801 846 3.780804 TCCGAATCAAAGAGACCCAAA 57.219 42.857 0.00 0.00 0.00 3.28
802 847 4.093472 TCCGAATCAAAGAGACCCAAAA 57.907 40.909 0.00 0.00 0.00 2.44
803 848 3.818773 TCCGAATCAAAGAGACCCAAAAC 59.181 43.478 0.00 0.00 0.00 2.43
804 849 3.821033 CCGAATCAAAGAGACCCAAAACT 59.179 43.478 0.00 0.00 0.00 2.66
805 850 5.001232 CCGAATCAAAGAGACCCAAAACTA 58.999 41.667 0.00 0.00 0.00 2.24
806 851 5.122396 CCGAATCAAAGAGACCCAAAACTAG 59.878 44.000 0.00 0.00 0.00 2.57
807 852 5.932303 CGAATCAAAGAGACCCAAAACTAGA 59.068 40.000 0.00 0.00 0.00 2.43
808 853 6.091441 CGAATCAAAGAGACCCAAAACTAGAG 59.909 42.308 0.00 0.00 0.00 2.43
809 854 4.642429 TCAAAGAGACCCAAAACTAGAGC 58.358 43.478 0.00 0.00 0.00 4.09
810 855 4.102524 TCAAAGAGACCCAAAACTAGAGCA 59.897 41.667 0.00 0.00 0.00 4.26
811 856 4.917906 AAGAGACCCAAAACTAGAGCAT 57.082 40.909 0.00 0.00 0.00 3.79
812 857 6.013725 TCAAAGAGACCCAAAACTAGAGCATA 60.014 38.462 0.00 0.00 0.00 3.14
813 858 6.567602 AAGAGACCCAAAACTAGAGCATAT 57.432 37.500 0.00 0.00 0.00 1.78
814 859 5.923204 AGAGACCCAAAACTAGAGCATATG 58.077 41.667 0.00 0.00 0.00 1.78
815 860 5.426833 AGAGACCCAAAACTAGAGCATATGT 59.573 40.000 4.29 0.00 0.00 2.29
816 861 5.675538 AGACCCAAAACTAGAGCATATGTC 58.324 41.667 4.29 1.17 0.00 3.06
817 862 4.781934 ACCCAAAACTAGAGCATATGTCC 58.218 43.478 4.29 0.00 0.00 4.02
818 863 4.475016 ACCCAAAACTAGAGCATATGTCCT 59.525 41.667 4.29 4.58 0.00 3.85
819 864 4.818546 CCCAAAACTAGAGCATATGTCCTG 59.181 45.833 4.29 0.50 0.00 3.86
820 865 5.396772 CCCAAAACTAGAGCATATGTCCTGA 60.397 44.000 4.29 0.00 0.00 3.86
821 866 6.294473 CCAAAACTAGAGCATATGTCCTGAT 58.706 40.000 4.29 0.00 0.00 2.90
822 867 6.204301 CCAAAACTAGAGCATATGTCCTGATG 59.796 42.308 4.29 1.06 0.00 3.07
823 868 6.737720 AAACTAGAGCATATGTCCTGATGA 57.262 37.500 4.29 0.00 0.00 2.92
824 869 6.931790 AACTAGAGCATATGTCCTGATGAT 57.068 37.500 4.29 0.00 0.00 2.45
825 870 6.283544 ACTAGAGCATATGTCCTGATGATG 57.716 41.667 4.29 0.00 0.00 3.07
826 871 4.554960 AGAGCATATGTCCTGATGATGG 57.445 45.455 4.29 0.00 0.00 3.51
827 872 3.908733 AGAGCATATGTCCTGATGATGGT 59.091 43.478 4.29 0.00 0.00 3.55
828 873 5.089434 AGAGCATATGTCCTGATGATGGTA 58.911 41.667 4.29 0.00 0.00 3.25
829 874 5.725338 AGAGCATATGTCCTGATGATGGTAT 59.275 40.000 4.29 0.00 0.00 2.73
830 875 5.742063 AGCATATGTCCTGATGATGGTATG 58.258 41.667 4.29 0.00 0.00 2.39
831 876 5.250082 AGCATATGTCCTGATGATGGTATGT 59.750 40.000 4.29 0.00 0.00 2.29
832 877 5.583854 GCATATGTCCTGATGATGGTATGTC 59.416 44.000 4.29 0.00 0.00 3.06
833 878 6.575847 GCATATGTCCTGATGATGGTATGTCT 60.576 42.308 4.29 0.00 0.00 3.41
834 879 5.901413 ATGTCCTGATGATGGTATGTCTT 57.099 39.130 0.00 0.00 0.00 3.01
835 880 5.698741 TGTCCTGATGATGGTATGTCTTT 57.301 39.130 0.00 0.00 0.00 2.52
836 881 6.065976 TGTCCTGATGATGGTATGTCTTTT 57.934 37.500 0.00 0.00 0.00 2.27
837 882 6.115446 TGTCCTGATGATGGTATGTCTTTTC 58.885 40.000 0.00 0.00 0.00 2.29
838 883 6.115446 GTCCTGATGATGGTATGTCTTTTCA 58.885 40.000 0.00 0.00 0.00 2.69
839 884 6.599244 GTCCTGATGATGGTATGTCTTTTCAA 59.401 38.462 0.00 0.00 0.00 2.69
840 885 6.599244 TCCTGATGATGGTATGTCTTTTCAAC 59.401 38.462 0.00 0.00 0.00 3.18
841 886 6.600822 CCTGATGATGGTATGTCTTTTCAACT 59.399 38.462 0.00 0.00 0.00 3.16
842 887 7.381766 TGATGATGGTATGTCTTTTCAACTG 57.618 36.000 0.00 0.00 0.00 3.16
843 888 6.942005 TGATGATGGTATGTCTTTTCAACTGT 59.058 34.615 0.00 0.00 0.00 3.55
844 889 6.801539 TGATGGTATGTCTTTTCAACTGTC 57.198 37.500 0.00 0.00 0.00 3.51
845 890 6.533730 TGATGGTATGTCTTTTCAACTGTCT 58.466 36.000 0.00 0.00 0.00 3.41
846 891 6.650807 TGATGGTATGTCTTTTCAACTGTCTC 59.349 38.462 0.00 0.00 0.00 3.36
847 892 4.988540 TGGTATGTCTTTTCAACTGTCTCG 59.011 41.667 0.00 0.00 0.00 4.04
848 893 4.989168 GGTATGTCTTTTCAACTGTCTCGT 59.011 41.667 0.00 0.00 0.00 4.18
849 894 6.154445 GGTATGTCTTTTCAACTGTCTCGTA 58.846 40.000 0.00 0.00 0.00 3.43
850 895 6.089150 GGTATGTCTTTTCAACTGTCTCGTAC 59.911 42.308 0.00 0.00 0.00 3.67
851 896 4.365723 TGTCTTTTCAACTGTCTCGTACC 58.634 43.478 0.00 0.00 0.00 3.34
988 1039 1.739049 CTCTCGGATCTGGACCAGC 59.261 63.158 17.33 3.48 0.00 4.85
989 1040 1.743321 CTCTCGGATCTGGACCAGCC 61.743 65.000 17.33 12.05 37.10 4.85
994 1049 3.315142 GATCTGGACCAGCCGCACA 62.315 63.158 17.33 0.00 40.66 4.57
1007 1062 1.153628 CGCACAGTAGCCAGGTACC 60.154 63.158 2.73 2.73 0.00 3.34
1029 1084 3.144193 CCGCCTCGCCTTCTCTCT 61.144 66.667 0.00 0.00 0.00 3.10
1030 1085 2.103934 CGCCTCGCCTTCTCTCTG 59.896 66.667 0.00 0.00 0.00 3.35
1031 1086 2.202864 GCCTCGCCTTCTCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
1032 1087 2.720134 GCCTCGCCTTCTCTCTGCT 61.720 63.158 0.00 0.00 0.00 4.24
1035 1090 0.817013 CTCGCCTTCTCTCTGCTTCT 59.183 55.000 0.00 0.00 0.00 2.85
1037 1092 0.529833 CGCCTTCTCTCTGCTTCTCA 59.470 55.000 0.00 0.00 0.00 3.27
1039 1094 2.620242 GCCTTCTCTCTGCTTCTCAAG 58.380 52.381 0.00 0.00 0.00 3.02
1040 1095 2.677613 GCCTTCTCTCTGCTTCTCAAGG 60.678 54.545 0.00 0.00 33.40 3.61
1045 1100 3.257873 TCTCTCTGCTTCTCAAGGACTTG 59.742 47.826 5.72 5.72 41.71 3.16
1046 1101 3.234353 TCTCTGCTTCTCAAGGACTTGA 58.766 45.455 13.56 13.56 46.27 3.02
1109 1168 2.189499 GGCATCCATCACCGGAAGC 61.189 63.158 9.46 0.00 46.65 3.86
1132 1191 4.451150 GACAGCGGCCGACATCCA 62.451 66.667 33.48 0.00 0.00 3.41
1199 1258 4.702081 GCAGTCACGTCGCCGTCT 62.702 66.667 0.00 0.00 46.28 4.18
1215 1274 2.588314 CTCGCTGCTGCTGGATCC 60.588 66.667 14.03 4.20 36.97 3.36
1218 1277 4.479993 GCTGCTGCTGGATCCGGT 62.480 66.667 21.88 0.00 36.03 5.28
1226 1285 1.330655 GCTGGATCCGGTCTCTCCAA 61.331 60.000 21.88 0.00 38.55 3.53
1229 1288 1.066587 GATCCGGTCTCTCCAAGCG 59.933 63.158 0.00 0.00 37.37 4.68
1232 1291 2.202676 CGGTCTCTCCAAGCGAGC 60.203 66.667 0.00 0.00 39.86 5.03
1275 1334 2.030274 GCCCATACAAACAAGAACGCTT 60.030 45.455 0.00 0.00 33.74 4.68
1291 1350 0.960861 GCTTTCGTCCCCCTTTCAGG 60.961 60.000 0.00 0.00 34.30 3.86
1292 1351 0.960861 CTTTCGTCCCCCTTTCAGGC 60.961 60.000 0.00 0.00 32.73 4.85
1293 1352 2.741486 TTTCGTCCCCCTTTCAGGCG 62.741 60.000 0.00 0.00 32.73 5.52
1294 1353 4.778143 CGTCCCCCTTTCAGGCGG 62.778 72.222 0.00 0.00 34.53 6.13
1385 1444 2.965716 AAAGCAAGCACCCACGAGCT 62.966 55.000 0.00 0.00 44.31 4.09
1413 1472 0.620556 TCCATGCCTCCCTCTGAAAC 59.379 55.000 0.00 0.00 0.00 2.78
1612 1672 3.036429 GCTCATGCTCCGGGAACCT 62.036 63.158 0.00 0.00 41.15 3.50
1929 2001 2.823829 GCGATGATTCCACGGTGGC 61.824 63.158 22.42 9.21 37.47 5.01
1954 2026 3.152341 CTCCTTCAACAGGCTCAACATT 58.848 45.455 0.00 0.00 43.55 2.71
1997 2069 0.677288 TGACCACTGGACGGTGTTAG 59.323 55.000 0.71 0.00 36.69 2.34
2016 2088 3.430862 GTTCCGCAATCCGCTGCA 61.431 61.111 0.00 0.00 42.77 4.41
2017 2089 3.126879 TTCCGCAATCCGCTGCAG 61.127 61.111 10.11 10.11 42.77 4.41
2029 2101 2.659016 CTGCAGACGGCTTCCTCA 59.341 61.111 8.42 0.00 45.15 3.86
2038 2110 2.464459 GGCTTCCTCAATGGTCGCG 61.464 63.158 0.00 0.00 37.07 5.87
2146 2218 1.595357 GGTTTCCCCGACGTCAGAT 59.405 57.895 17.16 0.00 0.00 2.90
2177 2249 2.227089 GATGGACAACGCCGGAGAGT 62.227 60.000 13.83 10.15 0.00 3.24
2262 2334 1.333881 CGACGTGTATCGACTGGATCC 60.334 57.143 4.20 4.20 45.13 3.36
2304 2376 3.659092 CAACAGCTTTGGCGGCGA 61.659 61.111 12.98 0.00 44.37 5.54
2383 2455 2.402564 CCTTCTGGCTCCATTAGAGGA 58.597 52.381 0.00 0.00 43.46 3.71
2398 2470 1.065272 AGAGGAGACACCGTCTACCTC 60.065 57.143 22.10 22.10 44.09 3.85
2476 2548 2.275318 GCCATTAGCAGCGATATCCTC 58.725 52.381 0.00 0.00 42.97 3.71
2478 2550 3.866066 GCCATTAGCAGCGATATCCTCAA 60.866 47.826 0.00 0.00 42.97 3.02
2484 2556 0.962489 AGCGATATCCTCAACTCCCG 59.038 55.000 0.00 0.00 0.00 5.14
2532 2604 1.789506 GACTGTCTCTCCTTGTGCAC 58.210 55.000 10.75 10.75 0.00 4.57
2577 2649 4.708868 TCGAAAAACATCTTGTCAGTCG 57.291 40.909 0.00 0.00 31.87 4.18
2585 2657 5.392767 ACATCTTGTCAGTCGTTGTAGAT 57.607 39.130 0.00 0.00 0.00 1.98
2590 2662 7.334844 TCTTGTCAGTCGTTGTAGATGATAT 57.665 36.000 0.00 0.00 0.00 1.63
2596 2668 5.403766 CAGTCGTTGTAGATGATATTGCTCC 59.596 44.000 0.00 0.00 0.00 4.70
2618 2694 4.020839 CCTCTTTTTCATTTGTGGCAGGAT 60.021 41.667 0.00 0.00 0.00 3.24
2620 2696 6.295236 CCTCTTTTTCATTTGTGGCAGGATAA 60.295 38.462 0.00 0.00 0.00 1.75
2636 2712 5.353938 CAGGATAATGGGAAGCAAAATGTG 58.646 41.667 0.00 0.00 0.00 3.21
2664 2744 3.428862 GGTTAATCAATCCGTGGCTTTGG 60.429 47.826 0.00 0.00 0.00 3.28
2680 2760 4.630505 GGCTTTGGTTAAAAACAAAACCGA 59.369 37.500 9.28 0.00 46.74 4.69
2681 2761 5.220510 GGCTTTGGTTAAAAACAAAACCGAG 60.221 40.000 9.28 0.00 46.74 4.63
2685 2765 4.114073 GGTTAAAAACAAAACCGAGGTGG 58.886 43.478 0.00 0.00 46.41 4.61
2777 2858 3.694566 CCTGGAAGTTTAGCATGGTAACC 59.305 47.826 16.65 14.38 0.00 2.85
2809 2895 5.284079 ACAATTGTGCTCTTTGAATCACAC 58.716 37.500 11.07 0.00 38.92 3.82
2819 2905 6.000891 TCTTTGAATCACACTTTCCATTCG 57.999 37.500 0.00 0.00 0.00 3.34
2826 2912 3.813166 TCACACTTTCCATTCGTTCCTTC 59.187 43.478 0.00 0.00 0.00 3.46
2862 2948 1.738830 ACAATTGCGCTGCCATTGC 60.739 52.632 19.55 2.74 42.80 3.56
2908 3037 3.195661 CAGTTACAAGCCGATCCTAACC 58.804 50.000 0.00 0.00 0.00 2.85
2948 4026 9.665264 GAAAAATTATATAGTGCACTACAAGCC 57.335 33.333 28.28 7.05 0.00 4.35
2957 4035 1.876416 GCACTACAAGCCGTTCCTTCA 60.876 52.381 0.00 0.00 0.00 3.02
2971 4049 5.861787 CCGTTCCTTCATTAATCAACCAAAC 59.138 40.000 0.00 0.00 0.00 2.93
2983 4061 4.503741 TCAACCAAACTATTTCTGCTGC 57.496 40.909 0.00 0.00 0.00 5.25
2987 4065 5.886960 ACCAAACTATTTCTGCTGCTAAG 57.113 39.130 0.00 0.00 0.00 2.18
2994 4072 5.872070 ACTATTTCTGCTGCTAAGTCTTCAC 59.128 40.000 0.00 0.00 0.00 3.18
3081 4159 0.550914 ACCTGCCCTGTCTTGAAACA 59.449 50.000 0.00 0.00 0.00 2.83
3088 4166 3.130340 GCCCTGTCTTGAAACAAAACTCA 59.870 43.478 0.00 0.00 0.00 3.41
3105 4183 2.893489 ACTCAGCAAAGAAACCATTCCC 59.107 45.455 0.00 0.00 36.12 3.97
3109 4187 3.037549 AGCAAAGAAACCATTCCCAACA 58.962 40.909 0.00 0.00 36.12 3.33
3191 4269 7.223777 CGATCCAAAATAAGTGTTGTGGTTTTT 59.776 33.333 0.00 0.00 0.00 1.94
3232 4310 6.598753 AACCACGATACTTATTTTGGATCG 57.401 37.500 6.78 6.78 43.79 3.69
3233 4311 5.909477 ACCACGATACTTATTTTGGATCGA 58.091 37.500 14.17 0.00 41.42 3.59
3376 4454 6.287525 ACTTGTTGGTTTATTTGGTTGATGG 58.712 36.000 0.00 0.00 0.00 3.51
3384 4462 7.066284 TGGTTTATTTGGTTGATGGTTTTGTTG 59.934 33.333 0.00 0.00 0.00 3.33
3385 4463 7.281100 GGTTTATTTGGTTGATGGTTTTGTTGA 59.719 33.333 0.00 0.00 0.00 3.18
3408 4487 3.685139 ACTTGAGTAAAGCTAGCAGCA 57.315 42.857 18.83 2.40 45.56 4.41
3411 4490 3.685139 TGAGTAAAGCTAGCAGCAGTT 57.315 42.857 18.83 0.00 45.56 3.16
3464 4543 1.901591 CTGAAATGACAGTGGTGGCT 58.098 50.000 0.00 0.00 33.73 4.75
3475 4554 3.054434 ACAGTGGTGGCTAGCATTCATTA 60.054 43.478 18.24 0.00 36.58 1.90
3487 4566 7.198390 GCTAGCATTCATTAGCTGAAAAATCA 58.802 34.615 10.63 0.00 46.62 2.57
3561 4641 4.095782 ACAATTTCGATCAACCATAACGGG 59.904 41.667 0.00 0.00 40.22 5.28
3575 4655 1.591768 AACGGGGTACAGAATCCCAT 58.408 50.000 5.17 0.00 45.06 4.00
3617 4697 5.021033 TCTGTTTTGCATCAACCAAACAT 57.979 34.783 11.42 0.00 32.40 2.71
3669 4750 6.871492 TCTCTCTAACACATGCAAACGAAATA 59.129 34.615 0.00 0.00 0.00 1.40
3696 4777 7.620880 AGTTATGTGTTCCTTTACTGCATCTA 58.379 34.615 0.00 0.00 0.00 1.98
3705 4786 5.810587 TCCTTTACTGCATCTATGAACGAAC 59.189 40.000 0.00 0.00 0.00 3.95
3746 4828 5.789521 TGGTCGACATTCACTGAATTCTAA 58.210 37.500 18.91 0.00 28.87 2.10
3751 4833 7.116376 GTCGACATTCACTGAATTCTAAGAACA 59.884 37.037 11.55 0.00 28.87 3.18
3762 4844 8.262601 TGAATTCTAAGAACATAGATAGGGCA 57.737 34.615 7.05 0.00 32.20 5.36
3767 4849 4.946478 AGAACATAGATAGGGCACTGTC 57.054 45.455 4.21 4.21 35.30 3.51
3768 4850 4.290093 AGAACATAGATAGGGCACTGTCA 58.710 43.478 15.73 1.50 37.31 3.58
3769 4851 4.100189 AGAACATAGATAGGGCACTGTCAC 59.900 45.833 15.73 0.00 37.31 3.67
3770 4852 2.700897 ACATAGATAGGGCACTGTCACC 59.299 50.000 15.73 0.00 37.31 4.02
3771 4853 2.848678 TAGATAGGGCACTGTCACCT 57.151 50.000 15.73 0.00 37.31 4.00
3772 4854 1.958288 AGATAGGGCACTGTCACCTT 58.042 50.000 15.73 0.00 37.31 3.50
3773 4855 1.556911 AGATAGGGCACTGTCACCTTG 59.443 52.381 15.73 0.00 37.31 3.61
3774 4856 1.279271 GATAGGGCACTGTCACCTTGT 59.721 52.381 8.00 0.00 35.19 3.16
3775 4857 2.018355 TAGGGCACTGTCACCTTGTA 57.982 50.000 0.00 0.00 35.84 2.41
3776 4858 0.396811 AGGGCACTGTCACCTTGTAC 59.603 55.000 0.00 0.00 0.00 2.90
3777 4859 0.949105 GGGCACTGTCACCTTGTACG 60.949 60.000 0.00 0.00 0.00 3.67
3778 4860 0.032952 GGCACTGTCACCTTGTACGA 59.967 55.000 0.00 0.00 0.00 3.43
3779 4861 1.419374 GCACTGTCACCTTGTACGAG 58.581 55.000 2.78 2.78 0.00 4.18
3780 4862 1.269621 GCACTGTCACCTTGTACGAGT 60.270 52.381 9.32 0.00 0.00 4.18
3781 4863 2.030540 GCACTGTCACCTTGTACGAGTA 60.031 50.000 9.32 0.00 0.00 2.59
3782 4864 3.551454 GCACTGTCACCTTGTACGAGTAA 60.551 47.826 9.32 0.00 0.00 2.24
3783 4865 4.806330 CACTGTCACCTTGTACGAGTAAT 58.194 43.478 9.32 0.00 0.00 1.89
3784 4866 5.227908 CACTGTCACCTTGTACGAGTAATT 58.772 41.667 9.32 0.00 0.00 1.40
3785 4867 5.345202 CACTGTCACCTTGTACGAGTAATTC 59.655 44.000 9.32 0.00 0.00 2.17
3786 4868 5.243283 ACTGTCACCTTGTACGAGTAATTCT 59.757 40.000 9.32 0.00 0.00 2.40
3787 4869 6.092955 TGTCACCTTGTACGAGTAATTCTT 57.907 37.500 9.32 0.00 0.00 2.52
3788 4870 6.518493 TGTCACCTTGTACGAGTAATTCTTT 58.482 36.000 9.32 0.00 0.00 2.52
3789 4871 6.643770 TGTCACCTTGTACGAGTAATTCTTTC 59.356 38.462 9.32 0.00 0.00 2.62
3790 4872 6.867293 GTCACCTTGTACGAGTAATTCTTTCT 59.133 38.462 9.32 0.00 0.00 2.52
3791 4873 7.062022 GTCACCTTGTACGAGTAATTCTTTCTC 59.938 40.741 9.32 0.00 0.00 2.87
3792 4874 6.866770 CACCTTGTACGAGTAATTCTTTCTCA 59.133 38.462 9.32 0.00 0.00 3.27
3793 4875 7.545965 CACCTTGTACGAGTAATTCTTTCTCAT 59.454 37.037 9.32 0.00 0.00 2.90
3794 4876 8.095169 ACCTTGTACGAGTAATTCTTTCTCATT 58.905 33.333 9.32 0.00 0.00 2.57
3795 4877 8.596380 CCTTGTACGAGTAATTCTTTCTCATTC 58.404 37.037 9.32 0.00 0.00 2.67
3796 4878 7.736031 TGTACGAGTAATTCTTTCTCATTCG 57.264 36.000 0.00 0.00 0.00 3.34
3797 4879 5.704217 ACGAGTAATTCTTTCTCATTCGC 57.296 39.130 0.00 0.00 0.00 4.70
3798 4880 5.168569 ACGAGTAATTCTTTCTCATTCGCA 58.831 37.500 0.00 0.00 0.00 5.10
3799 4881 5.812642 ACGAGTAATTCTTTCTCATTCGCAT 59.187 36.000 0.00 0.00 0.00 4.73
3800 4882 6.019479 ACGAGTAATTCTTTCTCATTCGCATC 60.019 38.462 0.00 0.00 0.00 3.91
3801 4883 6.019559 CGAGTAATTCTTTCTCATTCGCATCA 60.020 38.462 0.00 0.00 0.00 3.07
3802 4884 7.307042 CGAGTAATTCTTTCTCATTCGCATCAT 60.307 37.037 0.00 0.00 0.00 2.45
3803 4885 7.637229 AGTAATTCTTTCTCATTCGCATCATG 58.363 34.615 0.00 0.00 0.00 3.07
3804 4886 3.957671 TCTTTCTCATTCGCATCATGC 57.042 42.857 0.00 0.00 40.69 4.06
3805 4887 3.272581 TCTTTCTCATTCGCATCATGCA 58.727 40.909 11.00 0.00 45.36 3.96
3806 4888 3.064408 TCTTTCTCATTCGCATCATGCAC 59.936 43.478 11.00 0.00 45.36 4.57
3807 4889 0.932399 TCTCATTCGCATCATGCACG 59.068 50.000 11.00 0.00 45.36 5.34
3808 4890 0.654160 CTCATTCGCATCATGCACGT 59.346 50.000 11.00 0.00 45.36 4.49
3809 4891 1.063027 CTCATTCGCATCATGCACGTT 59.937 47.619 11.00 0.00 45.36 3.99
3810 4892 1.468127 TCATTCGCATCATGCACGTTT 59.532 42.857 11.00 0.00 45.36 3.60
3811 4893 1.580256 CATTCGCATCATGCACGTTTG 59.420 47.619 11.00 0.00 45.36 2.93
3821 4903 3.827524 CACGTTTGCATGGTTCGC 58.172 55.556 0.00 0.00 0.00 4.70
3822 4904 1.729131 CACGTTTGCATGGTTCGCC 60.729 57.895 0.00 0.00 37.92 5.54
3823 4905 1.896660 ACGTTTGCATGGTTCGCCT 60.897 52.632 0.00 0.00 38.36 5.52
3824 4906 1.285641 CGTTTGCATGGTTCGCCTT 59.714 52.632 0.00 0.00 38.36 4.35
3825 4907 0.318614 CGTTTGCATGGTTCGCCTTT 60.319 50.000 0.00 0.00 38.36 3.11
3826 4908 1.864565 GTTTGCATGGTTCGCCTTTT 58.135 45.000 0.00 0.00 38.36 2.27
3827 4909 2.209273 GTTTGCATGGTTCGCCTTTTT 58.791 42.857 0.00 0.00 38.36 1.94
3828 4910 2.147436 TTGCATGGTTCGCCTTTTTC 57.853 45.000 0.00 0.00 38.36 2.29
3829 4911 1.327303 TGCATGGTTCGCCTTTTTCT 58.673 45.000 0.00 0.00 38.36 2.52
3830 4912 1.269448 TGCATGGTTCGCCTTTTTCTC 59.731 47.619 0.00 0.00 38.36 2.87
3831 4913 1.269448 GCATGGTTCGCCTTTTTCTCA 59.731 47.619 0.00 0.00 38.36 3.27
3832 4914 2.094545 GCATGGTTCGCCTTTTTCTCAT 60.095 45.455 0.00 0.00 38.36 2.90
3833 4915 3.762779 CATGGTTCGCCTTTTTCTCATC 58.237 45.455 0.00 0.00 38.36 2.92
3834 4916 1.804151 TGGTTCGCCTTTTTCTCATCG 59.196 47.619 0.00 0.00 38.36 3.84
3835 4917 1.130561 GGTTCGCCTTTTTCTCATCGG 59.869 52.381 0.00 0.00 0.00 4.18
3836 4918 1.804748 GTTCGCCTTTTTCTCATCGGT 59.195 47.619 0.00 0.00 0.00 4.69
3837 4919 2.178912 TCGCCTTTTTCTCATCGGTT 57.821 45.000 0.00 0.00 0.00 4.44
3838 4920 2.500229 TCGCCTTTTTCTCATCGGTTT 58.500 42.857 0.00 0.00 0.00 3.27
3839 4921 2.882137 TCGCCTTTTTCTCATCGGTTTT 59.118 40.909 0.00 0.00 0.00 2.43
3840 4922 3.316868 TCGCCTTTTTCTCATCGGTTTTT 59.683 39.130 0.00 0.00 0.00 1.94
3841 4923 3.425193 CGCCTTTTTCTCATCGGTTTTTG 59.575 43.478 0.00 0.00 0.00 2.44
3842 4924 3.740832 GCCTTTTTCTCATCGGTTTTTGG 59.259 43.478 0.00 0.00 0.00 3.28
3843 4925 4.500716 GCCTTTTTCTCATCGGTTTTTGGA 60.501 41.667 0.00 0.00 0.00 3.53
3844 4926 5.596845 CCTTTTTCTCATCGGTTTTTGGAA 58.403 37.500 0.00 0.00 0.00 3.53
3845 4927 5.462068 CCTTTTTCTCATCGGTTTTTGGAAC 59.538 40.000 0.00 0.00 0.00 3.62
3846 4928 5.584253 TTTTCTCATCGGTTTTTGGAACA 57.416 34.783 0.00 0.00 0.00 3.18
3847 4929 5.782893 TTTCTCATCGGTTTTTGGAACAT 57.217 34.783 0.00 0.00 39.30 2.71
3848 4930 5.782893 TTCTCATCGGTTTTTGGAACATT 57.217 34.783 0.00 0.00 39.30 2.71
3849 4931 5.371115 TCTCATCGGTTTTTGGAACATTC 57.629 39.130 0.00 0.00 39.30 2.67
3850 4932 5.070001 TCTCATCGGTTTTTGGAACATTCT 58.930 37.500 0.00 0.00 39.30 2.40
3851 4933 6.234920 TCTCATCGGTTTTTGGAACATTCTA 58.765 36.000 0.00 0.00 39.30 2.10
3852 4934 6.712998 TCTCATCGGTTTTTGGAACATTCTAA 59.287 34.615 0.00 0.00 39.30 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 2.203139 CACCGCCACCACAACTCA 60.203 61.111 0.00 0.00 0.00 3.41
63 66 1.228398 TCCAATTTGCCTCGCACCA 60.228 52.632 0.00 0.00 38.71 4.17
369 386 2.104792 CAGAGGACCAACAGAGGACAAA 59.895 50.000 0.00 0.00 0.00 2.83
419 437 2.118513 CCGATCCGAGGGAGGGAT 59.881 66.667 0.00 0.00 46.82 3.85
482 518 1.065199 ACTTGTCGATGCACCATCCAT 60.065 47.619 0.00 0.00 37.57 3.41
493 529 5.571784 TCCGTAGAACATTACTTGTCGAT 57.428 39.130 0.00 0.00 37.68 3.59
502 538 3.175594 ACCACCCTTCCGTAGAACATTA 58.824 45.455 0.00 0.00 0.00 1.90
554 594 1.280710 CCTAGGTTGGCACATACACCA 59.719 52.381 7.95 0.00 39.30 4.17
587 629 1.068333 CCGCAAAGCAAGCTACAACAT 60.068 47.619 0.00 0.00 0.00 2.71
634 676 2.318519 TAGCGCACACCACACCACTT 62.319 55.000 11.47 0.00 0.00 3.16
687 732 9.747293 GACGTATCTTAGCTTTATAGAAGGTTT 57.253 33.333 0.00 0.00 0.00 3.27
688 733 9.134055 AGACGTATCTTAGCTTTATAGAAGGTT 57.866 33.333 0.00 0.00 0.00 3.50
689 734 8.569641 CAGACGTATCTTAGCTTTATAGAAGGT 58.430 37.037 0.00 0.00 30.42 3.50
690 735 8.784994 TCAGACGTATCTTAGCTTTATAGAAGG 58.215 37.037 0.00 0.00 30.42 3.46
691 736 9.820229 CTCAGACGTATCTTAGCTTTATAGAAG 57.180 37.037 0.00 0.00 30.42 2.85
692 737 9.339850 ACTCAGACGTATCTTAGCTTTATAGAA 57.660 33.333 0.00 0.00 30.36 2.10
693 738 8.775527 CACTCAGACGTATCTTAGCTTTATAGA 58.224 37.037 0.00 0.00 30.36 1.98
694 739 8.561212 ACACTCAGACGTATCTTAGCTTTATAG 58.439 37.037 0.00 0.00 30.36 1.31
695 740 8.447924 ACACTCAGACGTATCTTAGCTTTATA 57.552 34.615 0.00 0.00 30.36 0.98
696 741 7.336161 ACACTCAGACGTATCTTAGCTTTAT 57.664 36.000 0.00 0.00 30.36 1.40
697 742 6.754702 ACACTCAGACGTATCTTAGCTTTA 57.245 37.500 0.00 0.00 30.36 1.85
698 743 5.646577 ACACTCAGACGTATCTTAGCTTT 57.353 39.130 0.00 0.00 30.36 3.51
699 744 5.881443 AGTACACTCAGACGTATCTTAGCTT 59.119 40.000 0.00 0.00 30.36 3.74
700 745 5.430007 AGTACACTCAGACGTATCTTAGCT 58.570 41.667 0.00 0.00 30.36 3.32
701 746 5.738118 AGTACACTCAGACGTATCTTAGC 57.262 43.478 0.00 0.00 30.36 3.09
702 747 7.304919 TGAAGTACACTCAGACGTATCTTAG 57.695 40.000 0.00 0.00 33.11 2.18
703 748 7.677454 TTGAAGTACACTCAGACGTATCTTA 57.323 36.000 0.00 0.00 30.42 2.10
704 749 6.570672 TTGAAGTACACTCAGACGTATCTT 57.429 37.500 0.00 0.00 30.42 2.40
705 750 6.430308 TCTTTGAAGTACACTCAGACGTATCT 59.570 38.462 0.00 0.00 34.57 1.98
706 751 6.609533 TCTTTGAAGTACACTCAGACGTATC 58.390 40.000 0.00 0.00 0.00 2.24
707 752 6.570672 TCTTTGAAGTACACTCAGACGTAT 57.429 37.500 0.00 0.00 0.00 3.06
708 753 6.381481 TTCTTTGAAGTACACTCAGACGTA 57.619 37.500 0.00 0.00 0.00 3.57
709 754 4.913335 TCTTTGAAGTACACTCAGACGT 57.087 40.909 0.00 0.00 0.00 4.34
710 755 6.583912 TTTTCTTTGAAGTACACTCAGACG 57.416 37.500 0.00 0.00 0.00 4.18
754 799 9.883142 ACATTTTCAAAACACAGGAATAGAAAA 57.117 25.926 0.00 0.00 37.88 2.29
755 800 9.883142 AACATTTTCAAAACACAGGAATAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
756 801 9.528018 GAACATTTTCAAAACACAGGAATAGAA 57.472 29.630 0.00 0.00 0.00 2.10
757 802 8.141268 GGAACATTTTCAAAACACAGGAATAGA 58.859 33.333 0.00 0.00 32.80 1.98
758 803 7.114811 CGGAACATTTTCAAAACACAGGAATAG 59.885 37.037 0.00 0.00 32.80 1.73
759 804 6.920758 CGGAACATTTTCAAAACACAGGAATA 59.079 34.615 0.00 0.00 32.80 1.75
760 805 5.752955 CGGAACATTTTCAAAACACAGGAAT 59.247 36.000 0.00 0.00 32.80 3.01
761 806 5.105716 TCGGAACATTTTCAAAACACAGGAA 60.106 36.000 0.00 0.00 32.80 3.36
762 807 4.399618 TCGGAACATTTTCAAAACACAGGA 59.600 37.500 0.00 0.00 32.80 3.86
763 808 4.677584 TCGGAACATTTTCAAAACACAGG 58.322 39.130 0.00 0.00 32.80 4.00
764 809 6.475076 TGATTCGGAACATTTTCAAAACACAG 59.525 34.615 0.00 0.00 32.80 3.66
765 810 6.333416 TGATTCGGAACATTTTCAAAACACA 58.667 32.000 0.00 0.00 32.80 3.72
766 811 6.820470 TGATTCGGAACATTTTCAAAACAC 57.180 33.333 0.00 0.00 32.80 3.32
767 812 7.761704 TCTTTGATTCGGAACATTTTCAAAACA 59.238 29.630 14.06 5.19 33.97 2.83
768 813 8.125728 TCTTTGATTCGGAACATTTTCAAAAC 57.874 30.769 14.06 0.00 33.97 2.43
769 814 8.194104 TCTCTTTGATTCGGAACATTTTCAAAA 58.806 29.630 14.06 0.00 33.97 2.44
770 815 7.647715 GTCTCTTTGATTCGGAACATTTTCAAA 59.352 33.333 13.02 13.02 32.80 2.69
771 816 7.138736 GTCTCTTTGATTCGGAACATTTTCAA 58.861 34.615 0.00 0.00 32.80 2.69
772 817 6.293955 GGTCTCTTTGATTCGGAACATTTTCA 60.294 38.462 0.00 0.00 32.80 2.69
773 818 6.086871 GGTCTCTTTGATTCGGAACATTTTC 58.913 40.000 0.00 0.00 0.00 2.29
774 819 5.048013 GGGTCTCTTTGATTCGGAACATTTT 60.048 40.000 0.00 0.00 0.00 1.82
775 820 4.459337 GGGTCTCTTTGATTCGGAACATTT 59.541 41.667 0.00 0.00 0.00 2.32
776 821 4.010349 GGGTCTCTTTGATTCGGAACATT 58.990 43.478 0.00 0.00 0.00 2.71
777 822 3.009033 TGGGTCTCTTTGATTCGGAACAT 59.991 43.478 0.00 0.00 0.00 2.71
778 823 2.370519 TGGGTCTCTTTGATTCGGAACA 59.629 45.455 0.00 0.00 0.00 3.18
779 824 3.053831 TGGGTCTCTTTGATTCGGAAC 57.946 47.619 0.00 0.00 0.00 3.62
780 825 3.780804 TTGGGTCTCTTTGATTCGGAA 57.219 42.857 0.00 0.00 0.00 4.30
781 826 3.780804 TTTGGGTCTCTTTGATTCGGA 57.219 42.857 0.00 0.00 0.00 4.55
782 827 3.821033 AGTTTTGGGTCTCTTTGATTCGG 59.179 43.478 0.00 0.00 0.00 4.30
783 828 5.932303 TCTAGTTTTGGGTCTCTTTGATTCG 59.068 40.000 0.00 0.00 0.00 3.34
784 829 6.128145 GCTCTAGTTTTGGGTCTCTTTGATTC 60.128 42.308 0.00 0.00 0.00 2.52
785 830 5.707764 GCTCTAGTTTTGGGTCTCTTTGATT 59.292 40.000 0.00 0.00 0.00 2.57
786 831 5.221925 TGCTCTAGTTTTGGGTCTCTTTGAT 60.222 40.000 0.00 0.00 0.00 2.57
787 832 4.102524 TGCTCTAGTTTTGGGTCTCTTTGA 59.897 41.667 0.00 0.00 0.00 2.69
788 833 4.389374 TGCTCTAGTTTTGGGTCTCTTTG 58.611 43.478 0.00 0.00 0.00 2.77
789 834 4.706842 TGCTCTAGTTTTGGGTCTCTTT 57.293 40.909 0.00 0.00 0.00 2.52
790 835 4.917906 ATGCTCTAGTTTTGGGTCTCTT 57.082 40.909 0.00 0.00 0.00 2.85
791 836 5.426833 ACATATGCTCTAGTTTTGGGTCTCT 59.573 40.000 1.58 0.00 0.00 3.10
792 837 5.675538 ACATATGCTCTAGTTTTGGGTCTC 58.324 41.667 1.58 0.00 0.00 3.36
793 838 5.396884 GGACATATGCTCTAGTTTTGGGTCT 60.397 44.000 1.58 0.00 0.00 3.85
794 839 4.816925 GGACATATGCTCTAGTTTTGGGTC 59.183 45.833 1.58 0.00 0.00 4.46
795 840 4.475016 AGGACATATGCTCTAGTTTTGGGT 59.525 41.667 1.58 0.00 0.00 4.51
796 841 4.818546 CAGGACATATGCTCTAGTTTTGGG 59.181 45.833 1.58 0.00 0.00 4.12
797 842 5.674525 TCAGGACATATGCTCTAGTTTTGG 58.325 41.667 1.58 0.00 0.00 3.28
798 843 6.988580 TCATCAGGACATATGCTCTAGTTTTG 59.011 38.462 1.58 0.00 0.00 2.44
799 844 7.129457 TCATCAGGACATATGCTCTAGTTTT 57.871 36.000 1.58 0.00 0.00 2.43
800 845 6.737720 TCATCAGGACATATGCTCTAGTTT 57.262 37.500 1.58 0.00 0.00 2.66
801 846 6.295745 CCATCATCAGGACATATGCTCTAGTT 60.296 42.308 1.58 0.00 0.00 2.24
802 847 5.187381 CCATCATCAGGACATATGCTCTAGT 59.813 44.000 1.58 0.00 0.00 2.57
803 848 5.187381 ACCATCATCAGGACATATGCTCTAG 59.813 44.000 1.58 0.00 0.00 2.43
804 849 5.089434 ACCATCATCAGGACATATGCTCTA 58.911 41.667 1.58 0.00 0.00 2.43
805 850 3.908733 ACCATCATCAGGACATATGCTCT 59.091 43.478 1.58 0.00 0.00 4.09
806 851 4.283363 ACCATCATCAGGACATATGCTC 57.717 45.455 1.58 0.00 0.00 4.26
807 852 5.250082 ACATACCATCATCAGGACATATGCT 59.750 40.000 1.58 0.00 0.00 3.79
808 853 5.494724 ACATACCATCATCAGGACATATGC 58.505 41.667 1.58 0.00 0.00 3.14
809 854 6.944096 AGACATACCATCATCAGGACATATG 58.056 40.000 0.00 0.00 0.00 1.78
810 855 7.565190 AAGACATACCATCATCAGGACATAT 57.435 36.000 0.00 0.00 0.00 1.78
811 856 7.379059 AAAGACATACCATCATCAGGACATA 57.621 36.000 0.00 0.00 0.00 2.29
812 857 5.901413 AAGACATACCATCATCAGGACAT 57.099 39.130 0.00 0.00 0.00 3.06
813 858 5.698741 AAAGACATACCATCATCAGGACA 57.301 39.130 0.00 0.00 0.00 4.02
814 859 6.115446 TGAAAAGACATACCATCATCAGGAC 58.885 40.000 0.00 0.00 0.00 3.85
815 860 6.312141 TGAAAAGACATACCATCATCAGGA 57.688 37.500 0.00 0.00 0.00 3.86
816 861 6.600822 AGTTGAAAAGACATACCATCATCAGG 59.399 38.462 0.00 0.00 0.00 3.86
817 862 7.120285 ACAGTTGAAAAGACATACCATCATCAG 59.880 37.037 0.00 0.00 0.00 2.90
818 863 6.942005 ACAGTTGAAAAGACATACCATCATCA 59.058 34.615 0.00 0.00 0.00 3.07
819 864 7.335422 AGACAGTTGAAAAGACATACCATCATC 59.665 37.037 0.00 0.00 0.00 2.92
820 865 7.170965 AGACAGTTGAAAAGACATACCATCAT 58.829 34.615 0.00 0.00 0.00 2.45
821 866 6.533730 AGACAGTTGAAAAGACATACCATCA 58.466 36.000 0.00 0.00 0.00 3.07
822 867 6.183360 CGAGACAGTTGAAAAGACATACCATC 60.183 42.308 0.00 0.00 0.00 3.51
823 868 5.639506 CGAGACAGTTGAAAAGACATACCAT 59.360 40.000 0.00 0.00 0.00 3.55
824 869 4.988540 CGAGACAGTTGAAAAGACATACCA 59.011 41.667 0.00 0.00 0.00 3.25
825 870 4.989168 ACGAGACAGTTGAAAAGACATACC 59.011 41.667 0.00 0.00 0.00 2.73
826 871 6.089150 GGTACGAGACAGTTGAAAAGACATAC 59.911 42.308 0.00 0.00 0.00 2.39
827 872 6.154445 GGTACGAGACAGTTGAAAAGACATA 58.846 40.000 0.00 0.00 0.00 2.29
828 873 4.989168 GGTACGAGACAGTTGAAAAGACAT 59.011 41.667 0.00 0.00 0.00 3.06
829 874 4.365723 GGTACGAGACAGTTGAAAAGACA 58.634 43.478 0.00 0.00 0.00 3.41
830 875 4.968660 GGTACGAGACAGTTGAAAAGAC 57.031 45.455 0.00 0.00 0.00 3.01
847 892 1.104630 AGGAGCAACTCTAGCGGTAC 58.895 55.000 0.00 0.00 37.01 3.34
848 893 2.092538 AGTAGGAGCAACTCTAGCGGTA 60.093 50.000 0.00 0.00 37.01 4.02
849 894 1.104630 GTAGGAGCAACTCTAGCGGT 58.895 55.000 0.00 0.00 37.01 5.68
850 895 1.335496 GAGTAGGAGCAACTCTAGCGG 59.665 57.143 0.00 0.00 40.21 5.52
851 896 1.335496 GGAGTAGGAGCAACTCTAGCG 59.665 57.143 3.50 0.00 42.48 4.26
916 961 2.663063 GCGTGCGAGGAAAGAAGAAAAG 60.663 50.000 0.00 0.00 0.00 2.27
988 1039 1.153628 GTACCTGGCTACTGTGCGG 60.154 63.158 0.00 0.00 0.00 5.69
989 1040 1.153628 GGTACCTGGCTACTGTGCG 60.154 63.158 4.06 0.00 0.00 5.34
994 1049 3.145551 CGGCGGTACCTGGCTACT 61.146 66.667 21.49 0.00 35.61 2.57
1022 1077 3.505386 AGTCCTTGAGAAGCAGAGAGAA 58.495 45.455 0.00 0.00 0.00 2.87
1023 1078 3.168035 AGTCCTTGAGAAGCAGAGAGA 57.832 47.619 0.00 0.00 0.00 3.10
1035 1090 4.753516 TTCTGTTGAGTCAAGTCCTTGA 57.246 40.909 5.62 5.64 46.27 3.02
1037 1092 4.505742 GGGATTCTGTTGAGTCAAGTCCTT 60.506 45.833 5.62 0.00 31.51 3.36
1039 1094 3.339141 GGGATTCTGTTGAGTCAAGTCC 58.661 50.000 5.62 8.81 31.51 3.85
1040 1095 3.339141 GGGGATTCTGTTGAGTCAAGTC 58.661 50.000 5.62 0.00 31.51 3.01
1045 1100 2.573915 AGAAGGGGGATTCTGTTGAGTC 59.426 50.000 0.00 0.00 38.12 3.36
1046 1101 2.637165 AGAAGGGGGATTCTGTTGAGT 58.363 47.619 0.00 0.00 38.12 3.41
1126 1185 3.965258 TTGCTGGGCCGTGGATGT 61.965 61.111 0.00 0.00 0.00 3.06
1134 1193 2.820037 GAGCTACGTTGCTGGGCC 60.820 66.667 28.69 10.74 44.17 5.80
1135 1194 2.820037 GGAGCTACGTTGCTGGGC 60.820 66.667 28.69 14.21 44.17 5.36
1138 1197 1.805945 GACCGGAGCTACGTTGCTG 60.806 63.158 28.69 16.55 44.17 4.41
1207 1266 1.330655 TTGGAGAGACCGGATCCAGC 61.331 60.000 9.46 0.00 43.71 4.85
1215 1274 2.202676 GCTCGCTTGGAGAGACCG 60.203 66.667 2.68 0.00 46.23 4.79
1218 1277 2.973899 GGTGCTCGCTTGGAGAGA 59.026 61.111 2.68 0.00 46.23 3.10
1249 1308 4.261405 CGTTCTTGTTTGTATGGGCTTGAA 60.261 41.667 0.00 0.00 0.00 2.69
1413 1472 3.095347 GCCCAGTCCCTCCGCTTAG 62.095 68.421 0.00 0.00 0.00 2.18
1774 1837 3.426568 GTCAGCGGGTTGAGCAGC 61.427 66.667 0.00 0.00 37.01 5.25
1850 1913 2.282180 GGCGGTGAAAAGGAGGCA 60.282 61.111 0.00 0.00 0.00 4.75
2016 2088 0.250513 GACCATTGAGGAAGCCGTCT 59.749 55.000 0.00 0.00 41.22 4.18
2017 2089 1.084370 CGACCATTGAGGAAGCCGTC 61.084 60.000 0.00 0.00 41.22 4.79
2029 2101 3.945304 GAACCGTCCCGCGACCATT 62.945 63.158 8.23 0.00 44.77 3.16
2038 2110 0.963962 TGACACAGTAGAACCGTCCC 59.036 55.000 0.00 0.00 0.00 4.46
2055 2127 1.018752 CATGACGCCGTCAATGGTGA 61.019 55.000 25.07 0.00 45.96 4.02
2139 2211 0.802222 CAGGTGCACGGTATCTGACG 60.802 60.000 11.45 0.00 0.00 4.35
2141 2213 1.136891 CATCAGGTGCACGGTATCTGA 59.863 52.381 20.35 20.35 38.59 3.27
2146 2218 1.188871 TGTCCATCAGGTGCACGGTA 61.189 55.000 11.45 0.00 35.89 4.02
2166 2238 4.719369 GCGTCAACTCTCCGGCGT 62.719 66.667 6.01 0.00 0.00 5.68
2167 2239 4.421479 AGCGTCAACTCTCCGGCG 62.421 66.667 0.00 0.00 0.00 6.46
2284 2356 2.644992 CCGCCAAAGCTGTTGACC 59.355 61.111 9.37 1.80 36.60 4.02
2304 2376 1.453155 GATGAACAAGGCATGTCCGT 58.547 50.000 0.00 0.00 42.99 4.69
2357 2429 1.904440 ATGGAGCCAGAAGGGAAGAT 58.096 50.000 0.00 0.00 40.01 2.40
2383 2455 0.038455 AGCTGAGGTAGACGGTGTCT 59.962 55.000 4.70 4.70 45.54 3.41
2398 2470 1.659601 CTCTCTGCAATGTCGAAGCTG 59.340 52.381 0.00 0.00 0.00 4.24
2472 2544 3.068691 CCGAGCGGGAGTTGAGGA 61.069 66.667 0.00 0.00 38.47 3.71
2532 2604 1.405821 GACACCAGATCCGACCAGTAG 59.594 57.143 0.00 0.00 0.00 2.57
2577 2649 8.443953 AAAAGAGGAGCAATATCATCTACAAC 57.556 34.615 0.00 0.00 39.30 3.32
2585 2657 8.030692 CACAAATGAAAAAGAGGAGCAATATCA 58.969 33.333 0.00 0.00 0.00 2.15
2590 2662 4.740334 GCCACAAATGAAAAAGAGGAGCAA 60.740 41.667 0.00 0.00 0.00 3.91
2596 2668 4.589216 TCCTGCCACAAATGAAAAAGAG 57.411 40.909 0.00 0.00 0.00 2.85
2618 2694 4.798924 GCACACACATTTTGCTTCCCATTA 60.799 41.667 0.00 0.00 33.26 1.90
2620 2696 2.548493 GCACACACATTTTGCTTCCCAT 60.548 45.455 0.00 0.00 33.26 4.00
2636 2712 2.452006 CGGATTGATTAACCGCACAC 57.548 50.000 0.00 0.00 40.19 3.82
2680 2760 0.977395 GAAGCCACAGAGTACCACCT 59.023 55.000 0.00 0.00 0.00 4.00
2681 2761 0.389948 CGAAGCCACAGAGTACCACC 60.390 60.000 0.00 0.00 0.00 4.61
2685 2765 1.000506 TGGTTCGAAGCCACAGAGTAC 59.999 52.381 23.50 0.00 0.00 2.73
2777 2858 3.067106 AGAGCACAATTGTACAGTTCGG 58.933 45.455 11.53 0.00 0.00 4.30
2809 2895 4.455533 TCACATGAAGGAACGAATGGAAAG 59.544 41.667 0.00 0.00 0.00 2.62
2819 2905 6.261603 TGCATATCAATCTCACATGAAGGAAC 59.738 38.462 0.00 0.00 0.00 3.62
2826 2912 7.623268 CAATTGTGCATATCAATCTCACATG 57.377 36.000 0.00 0.00 37.48 3.21
2852 2938 0.964358 AGAGGACAAGCAATGGCAGC 60.964 55.000 0.00 0.00 44.61 5.25
2862 2948 9.688091 TGGACTATATATAGCTTAGAGGACAAG 57.312 37.037 18.00 0.00 33.68 3.16
2882 2968 2.429610 GGATCGGCTTGTAACTGGACTA 59.570 50.000 0.00 0.00 0.00 2.59
2884 2975 1.207329 AGGATCGGCTTGTAACTGGAC 59.793 52.381 0.00 0.00 0.00 4.02
2893 2984 2.135933 GAATCGGTTAGGATCGGCTTG 58.864 52.381 0.00 0.00 0.00 4.01
2948 4026 6.677913 AGTTTGGTTGATTAATGAAGGAACG 58.322 36.000 0.00 0.00 0.00 3.95
2957 4035 7.761249 GCAGCAGAAATAGTTTGGTTGATTAAT 59.239 33.333 0.00 0.00 0.00 1.40
2971 4049 6.105333 AGTGAAGACTTAGCAGCAGAAATAG 58.895 40.000 0.00 0.00 0.00 1.73
2983 4061 8.433421 CTAGTCTAGGAGAAGTGAAGACTTAG 57.567 42.308 8.44 2.18 43.25 2.18
3055 4133 2.937689 ACAGGGCAGGTCAGGCAT 60.938 61.111 0.00 0.00 35.46 4.40
3081 4159 5.359756 GGAATGGTTTCTTTGCTGAGTTTT 58.640 37.500 0.00 0.00 32.16 2.43
3088 4166 3.037549 TGTTGGGAATGGTTTCTTTGCT 58.962 40.909 0.00 0.00 32.16 3.91
3214 4292 6.220930 TCCCTTCGATCCAAAATAAGTATCG 58.779 40.000 0.00 0.00 40.49 2.92
3215 4293 7.217906 ACTCCCTTCGATCCAAAATAAGTATC 58.782 38.462 0.00 0.00 0.00 2.24
3219 4297 8.451908 AAATACTCCCTTCGATCCAAAATAAG 57.548 34.615 0.00 0.00 0.00 1.73
3233 4311 9.831682 TGTTTTCCCTTATTTAAATACTCCCTT 57.168 29.630 7.43 0.00 0.00 3.95
3295 4373 6.449698 CATGAATTCTGGCTTTTACACTTGT 58.550 36.000 7.05 0.00 0.00 3.16
3298 4376 5.649782 CCATGAATTCTGGCTTTTACACT 57.350 39.130 7.05 0.00 0.00 3.55
3364 4442 7.534282 GTTTTCAACAAAACCATCAACCAAAT 58.466 30.769 0.00 0.00 43.93 2.32
3384 4462 5.049405 TGCTGCTAGCTTTACTCAAGTTTTC 60.049 40.000 17.23 0.00 42.97 2.29
3385 4463 4.821805 TGCTGCTAGCTTTACTCAAGTTTT 59.178 37.500 17.23 0.00 42.97 2.43
3396 4475 3.935828 GCTTACTAACTGCTGCTAGCTTT 59.064 43.478 17.23 4.06 42.97 3.51
3434 4513 6.150641 CCACTGTCATTTCAGTTCTGATGATT 59.849 38.462 3.28 0.00 44.92 2.57
3457 4536 2.173356 AGCTAATGAATGCTAGCCACCA 59.827 45.455 13.29 7.37 41.25 4.17
3561 4641 2.092968 TCACTGCATGGGATTCTGTACC 60.093 50.000 0.00 0.00 0.00 3.34
3669 4750 5.865085 TGCAGTAAAGGAACACATAACTCT 58.135 37.500 0.00 0.00 0.00 3.24
3696 4777 2.028476 TCATCTTGGACGGTTCGTTCAT 60.028 45.455 2.10 0.00 45.15 2.57
3705 4786 1.665679 CCATCGTTTCATCTTGGACGG 59.334 52.381 0.00 0.00 36.27 4.79
3746 4828 4.100189 GTGACAGTGCCCTATCTATGTTCT 59.900 45.833 0.00 0.00 0.00 3.01
3751 4833 3.336509 AGGTGACAGTGCCCTATCTAT 57.663 47.619 0.00 0.00 0.00 1.98
3762 4844 5.243283 AGAATTACTCGTACAAGGTGACAGT 59.757 40.000 0.00 0.00 0.00 3.55
3767 4849 6.866770 TGAGAAAGAATTACTCGTACAAGGTG 59.133 38.462 0.00 0.00 33.93 4.00
3768 4850 6.989659 TGAGAAAGAATTACTCGTACAAGGT 58.010 36.000 0.00 0.00 33.93 3.50
3769 4851 8.480643 AATGAGAAAGAATTACTCGTACAAGG 57.519 34.615 0.00 0.00 33.93 3.61
3770 4852 8.314635 CGAATGAGAAAGAATTACTCGTACAAG 58.685 37.037 0.00 0.00 33.93 3.16
3771 4853 7.201410 GCGAATGAGAAAGAATTACTCGTACAA 60.201 37.037 0.00 0.00 33.93 2.41
3772 4854 6.252869 GCGAATGAGAAAGAATTACTCGTACA 59.747 38.462 0.00 0.00 33.93 2.90
3773 4855 6.252869 TGCGAATGAGAAAGAATTACTCGTAC 59.747 38.462 0.00 0.00 33.93 3.67
3774 4856 6.327154 TGCGAATGAGAAAGAATTACTCGTA 58.673 36.000 0.00 0.00 33.93 3.43
3775 4857 5.168569 TGCGAATGAGAAAGAATTACTCGT 58.831 37.500 0.00 0.00 33.93 4.18
3776 4858 5.702622 TGCGAATGAGAAAGAATTACTCG 57.297 39.130 0.00 0.00 33.93 4.18
3777 4859 7.239166 TGATGCGAATGAGAAAGAATTACTC 57.761 36.000 0.00 0.00 0.00 2.59
3778 4860 7.637229 CATGATGCGAATGAGAAAGAATTACT 58.363 34.615 0.00 0.00 0.00 2.24
3779 4861 6.359087 GCATGATGCGAATGAGAAAGAATTAC 59.641 38.462 0.00 0.00 31.71 1.89
3780 4862 6.432936 GCATGATGCGAATGAGAAAGAATTA 58.567 36.000 0.00 0.00 31.71 1.40
3781 4863 5.279384 GCATGATGCGAATGAGAAAGAATT 58.721 37.500 0.00 0.00 31.71 2.17
3782 4864 4.856664 GCATGATGCGAATGAGAAAGAAT 58.143 39.130 0.00 0.00 31.71 2.40
3783 4865 4.282950 GCATGATGCGAATGAGAAAGAA 57.717 40.909 0.00 0.00 31.71 2.52
3784 4866 3.957671 GCATGATGCGAATGAGAAAGA 57.042 42.857 0.00 0.00 31.71 2.52
3804 4886 1.729131 GGCGAACCATGCAAACGTG 60.729 57.895 0.00 0.00 35.26 4.49
3805 4887 1.452145 AAGGCGAACCATGCAAACGT 61.452 50.000 0.00 0.00 39.06 3.99
3806 4888 0.318614 AAAGGCGAACCATGCAAACG 60.319 50.000 0.00 0.00 39.06 3.60
3807 4889 1.864565 AAAAGGCGAACCATGCAAAC 58.135 45.000 0.00 0.00 39.06 2.93
3808 4890 2.102252 AGAAAAAGGCGAACCATGCAAA 59.898 40.909 0.00 0.00 39.06 3.68
3809 4891 1.686052 AGAAAAAGGCGAACCATGCAA 59.314 42.857 0.00 0.00 39.06 4.08
3810 4892 1.269448 GAGAAAAAGGCGAACCATGCA 59.731 47.619 0.00 0.00 39.06 3.96
3811 4893 1.269448 TGAGAAAAAGGCGAACCATGC 59.731 47.619 0.00 0.00 39.06 4.06
3812 4894 3.728864 CGATGAGAAAAAGGCGAACCATG 60.729 47.826 0.00 0.00 39.06 3.66
3813 4895 2.420022 CGATGAGAAAAAGGCGAACCAT 59.580 45.455 0.00 0.00 39.06 3.55
3814 4896 1.804151 CGATGAGAAAAAGGCGAACCA 59.196 47.619 0.00 0.00 39.06 3.67
3815 4897 1.130561 CCGATGAGAAAAAGGCGAACC 59.869 52.381 0.00 0.00 0.00 3.62
3816 4898 1.804748 ACCGATGAGAAAAAGGCGAAC 59.195 47.619 0.00 0.00 0.00 3.95
3817 4899 2.178912 ACCGATGAGAAAAAGGCGAA 57.821 45.000 0.00 0.00 0.00 4.70
3818 4900 2.178912 AACCGATGAGAAAAAGGCGA 57.821 45.000 0.00 0.00 0.00 5.54
3819 4901 2.989422 AAACCGATGAGAAAAAGGCG 57.011 45.000 0.00 0.00 0.00 5.52
3820 4902 3.740832 CCAAAAACCGATGAGAAAAAGGC 59.259 43.478 0.00 0.00 0.00 4.35
3821 4903 5.195001 TCCAAAAACCGATGAGAAAAAGG 57.805 39.130 0.00 0.00 0.00 3.11
3822 4904 6.039616 TGTTCCAAAAACCGATGAGAAAAAG 58.960 36.000 0.00 0.00 0.00 2.27
3823 4905 5.967088 TGTTCCAAAAACCGATGAGAAAAA 58.033 33.333 0.00 0.00 0.00 1.94
3824 4906 5.584253 TGTTCCAAAAACCGATGAGAAAA 57.416 34.783 0.00 0.00 0.00 2.29
3825 4907 5.782893 ATGTTCCAAAAACCGATGAGAAA 57.217 34.783 0.00 0.00 0.00 2.52
3826 4908 5.534654 AGAATGTTCCAAAAACCGATGAGAA 59.465 36.000 0.00 0.00 0.00 2.87
3827 4909 5.070001 AGAATGTTCCAAAAACCGATGAGA 58.930 37.500 0.00 0.00 0.00 3.27
3828 4910 5.376854 AGAATGTTCCAAAAACCGATGAG 57.623 39.130 0.00 0.00 0.00 2.90
3829 4911 6.885952 TTAGAATGTTCCAAAAACCGATGA 57.114 33.333 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.