Multiple sequence alignment - TraesCS7B01G342000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G342000 chr7B 100.000 2737 0 0 1 2737 597149841 597152577 0.000000e+00 5055.0
1 TraesCS7B01G342000 chr7B 80.612 98 11 6 1795 1888 603312729 603312822 4.890000e-08 69.4
2 TraesCS7B01G342000 chr2B 96.863 797 21 4 1882 2675 250068361 250067566 0.000000e+00 1330.0
3 TraesCS7B01G342000 chr2B 95.609 797 26 4 1882 2676 219887377 219888166 0.000000e+00 1269.0
4 TraesCS7B01G342000 chr2B 86.290 496 60 7 2186 2677 602747151 602747642 1.440000e-147 532.0
5 TraesCS7B01G342000 chr2B 82.895 76 9 3 1802 1875 777127530 777127603 6.330000e-07 65.8
6 TraesCS7B01G342000 chr1B 95.944 789 24 3 1882 2669 580222995 580222214 0.000000e+00 1273.0
7 TraesCS7B01G342000 chr1B 93.789 322 11 3 1882 2203 426159324 426159636 2.470000e-130 475.0
8 TraesCS7B01G342000 chr1B 93.885 278 14 3 1 276 573761648 573761372 1.520000e-112 416.0
9 TraesCS7B01G342000 chr3B 95.437 789 27 4 1882 2669 688544897 688544117 0.000000e+00 1249.0
10 TraesCS7B01G342000 chr3B 88.636 88 5 2 1801 1883 762330509 762330596 4.820000e-18 102.0
11 TraesCS7B01G342000 chr3B 95.556 45 1 1 1800 1844 732152036 732151993 1.360000e-08 71.3
12 TraesCS7B01G342000 chr3B 95.455 44 1 1 1801 1844 672717638 672717596 4.890000e-08 69.4
13 TraesCS7B01G342000 chr7D 87.076 944 54 17 693 1619 552270548 552271440 0.000000e+00 1005.0
14 TraesCS7B01G342000 chr7D 94.057 488 27 2 2188 2673 549273673 549274160 0.000000e+00 739.0
15 TraesCS7B01G342000 chr7D 94.142 478 19 7 2188 2657 167550103 167550579 0.000000e+00 719.0
16 TraesCS7B01G342000 chr7D 89.113 496 41 10 2188 2673 385394594 385395086 3.010000e-169 604.0
17 TraesCS7B01G342000 chr7D 95.806 310 11 2 1882 2191 167549748 167550055 1.460000e-137 499.0
18 TraesCS7B01G342000 chr7D 95.161 310 13 2 1882 2191 549273320 549273627 3.170000e-134 488.0
19 TraesCS7B01G342000 chr7D 90.997 311 24 4 1882 2191 385394239 385394546 1.520000e-112 416.0
20 TraesCS7B01G342000 chr7D 86.364 198 13 7 269 455 552269946 552270140 1.280000e-48 204.0
21 TraesCS7B01G342000 chr7A 87.367 847 55 19 805 1618 637875233 637876060 0.000000e+00 924.0
22 TraesCS7B01G342000 chr7A 92.336 274 16 5 1 272 315275404 315275134 4.280000e-103 385.0
23 TraesCS7B01G342000 chr7A 81.100 291 36 5 1337 1618 683770606 683770886 5.940000e-52 215.0
24 TraesCS7B01G342000 chr7A 92.308 65 5 0 2673 2737 265161552 265161616 2.900000e-15 93.5
25 TraesCS7B01G342000 chr1D 94.192 396 20 3 2188 2581 108803997 108804391 3.900000e-168 601.0
26 TraesCS7B01G342000 chr1D 91.503 306 22 4 1883 2186 26648427 26648730 4.220000e-113 418.0
27 TraesCS7B01G342000 chr3A 95.620 274 11 1 1 273 31569487 31569214 3.240000e-119 438.0
28 TraesCS7B01G342000 chr3A 92.000 275 17 5 1 272 23254145 23254417 5.530000e-102 381.0
29 TraesCS7B01G342000 chr3A 86.885 61 5 3 1783 1841 514051113 514051172 6.330000e-07 65.8
30 TraesCS7B01G342000 chr5A 95.185 270 12 1 1 269 2739479 2739748 2.520000e-115 425.0
31 TraesCS7B01G342000 chr2D 94.485 272 12 2 1 269 645836669 645836398 1.520000e-112 416.0
32 TraesCS7B01G342000 chr2A 94.553 257 10 4 1 254 677534624 677534879 7.100000e-106 394.0
33 TraesCS7B01G342000 chr1A 88.933 253 25 3 20 271 549592736 549592486 2.650000e-80 309.0
34 TraesCS7B01G342000 chr1A 96.341 82 3 0 1801 1882 485970421 485970340 4.750000e-28 135.0
35 TraesCS7B01G342000 chr1A 96.970 66 2 0 2672 2737 485970331 485970266 8.010000e-21 111.0
36 TraesCS7B01G342000 chr5D 91.758 182 14 1 93 273 543444149 543444330 4.520000e-63 252.0
37 TraesCS7B01G342000 chrUn 95.364 151 7 0 1 151 100487469 100487619 9.790000e-60 241.0
38 TraesCS7B01G342000 chr4A 82.955 88 8 4 1800 1884 168186483 168186400 3.780000e-09 73.1
39 TraesCS7B01G342000 chr6B 81.319 91 11 4 1801 1888 670994305 670994392 4.890000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G342000 chr7B 597149841 597152577 2736 False 5055.0 5055 100.000 1 2737 1 chr7B.!!$F1 2736
1 TraesCS7B01G342000 chr2B 250067566 250068361 795 True 1330.0 1330 96.863 1882 2675 1 chr2B.!!$R1 793
2 TraesCS7B01G342000 chr2B 219887377 219888166 789 False 1269.0 1269 95.609 1882 2676 1 chr2B.!!$F1 794
3 TraesCS7B01G342000 chr1B 580222214 580222995 781 True 1273.0 1273 95.944 1882 2669 1 chr1B.!!$R2 787
4 TraesCS7B01G342000 chr3B 688544117 688544897 780 True 1249.0 1249 95.437 1882 2669 1 chr3B.!!$R2 787
5 TraesCS7B01G342000 chr7D 549273320 549274160 840 False 613.5 739 94.609 1882 2673 2 chr7D.!!$F3 791
6 TraesCS7B01G342000 chr7D 167549748 167550579 831 False 609.0 719 94.974 1882 2657 2 chr7D.!!$F1 775
7 TraesCS7B01G342000 chr7D 552269946 552271440 1494 False 604.5 1005 86.720 269 1619 2 chr7D.!!$F4 1350
8 TraesCS7B01G342000 chr7D 385394239 385395086 847 False 510.0 604 90.055 1882 2673 2 chr7D.!!$F2 791
9 TraesCS7B01G342000 chr7A 637875233 637876060 827 False 924.0 924 87.367 805 1618 1 chr7A.!!$F2 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 899 0.031314 CAGCGGTATCACGAGCAGAT 59.969 55.0 0.0 0.0 35.47 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 2220 0.170116 CGGCCGCTCAATTTTGCTAA 59.83 50.0 14.67 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.373116 GAGCACAACCTCGCCGGA 62.373 66.667 5.05 0.00 36.31 5.14
19 20 4.681978 AGCACAACCTCGCCGGAC 62.682 66.667 5.05 0.00 36.31 4.79
20 21 4.681978 GCACAACCTCGCCGGACT 62.682 66.667 5.05 0.00 36.31 3.85
21 22 2.432628 CACAACCTCGCCGGACTC 60.433 66.667 5.05 0.00 36.31 3.36
22 23 4.052229 ACAACCTCGCCGGACTCG 62.052 66.667 5.05 0.00 36.31 4.18
26 27 4.856607 CCTCGCCGGACTCGCTTC 62.857 72.222 5.05 0.00 34.56 3.86
27 28 4.856607 CTCGCCGGACTCGCTTCC 62.857 72.222 5.05 0.00 34.56 3.46
29 30 4.856607 CGCCGGACTCGCTTCCTC 62.857 72.222 5.05 0.00 32.88 3.71
30 31 4.516195 GCCGGACTCGCTTCCTCC 62.516 72.222 5.05 0.00 32.88 4.30
31 32 3.839432 CCGGACTCGCTTCCTCCC 61.839 72.222 0.00 0.00 32.88 4.30
32 33 3.839432 CGGACTCGCTTCCTCCCC 61.839 72.222 1.23 0.00 32.88 4.81
33 34 2.364448 GGACTCGCTTCCTCCCCT 60.364 66.667 0.00 0.00 32.24 4.79
34 35 1.990614 GGACTCGCTTCCTCCCCTT 60.991 63.158 0.00 0.00 32.24 3.95
35 36 0.686769 GGACTCGCTTCCTCCCCTTA 60.687 60.000 0.00 0.00 32.24 2.69
36 37 0.460722 GACTCGCTTCCTCCCCTTAC 59.539 60.000 0.00 0.00 0.00 2.34
37 38 0.976590 ACTCGCTTCCTCCCCTTACC 60.977 60.000 0.00 0.00 0.00 2.85
38 39 0.688087 CTCGCTTCCTCCCCTTACCT 60.688 60.000 0.00 0.00 0.00 3.08
39 40 0.686769 TCGCTTCCTCCCCTTACCTC 60.687 60.000 0.00 0.00 0.00 3.85
40 41 0.688087 CGCTTCCTCCCCTTACCTCT 60.688 60.000 0.00 0.00 0.00 3.69
41 42 1.124780 GCTTCCTCCCCTTACCTCTC 58.875 60.000 0.00 0.00 0.00 3.20
42 43 1.796017 CTTCCTCCCCTTACCTCTCC 58.204 60.000 0.00 0.00 0.00 3.71
43 44 1.008449 CTTCCTCCCCTTACCTCTCCA 59.992 57.143 0.00 0.00 0.00 3.86
44 45 1.098589 TCCTCCCCTTACCTCTCCAA 58.901 55.000 0.00 0.00 0.00 3.53
45 46 1.439543 TCCTCCCCTTACCTCTCCAAA 59.560 52.381 0.00 0.00 0.00 3.28
46 47 2.047296 TCCTCCCCTTACCTCTCCAAAT 59.953 50.000 0.00 0.00 0.00 2.32
47 48 2.173569 CCTCCCCTTACCTCTCCAAATG 59.826 54.545 0.00 0.00 0.00 2.32
48 49 2.173569 CTCCCCTTACCTCTCCAAATGG 59.826 54.545 0.00 0.00 0.00 3.16
49 50 2.205342 CCCCTTACCTCTCCAAATGGA 58.795 52.381 1.53 1.53 43.08 3.41
77 78 4.227134 CGCGAGCAGGGCCTGTAT 62.227 66.667 32.80 22.56 33.43 2.29
78 79 2.590007 GCGAGCAGGGCCTGTATG 60.590 66.667 32.80 22.62 33.43 2.39
79 80 2.590007 CGAGCAGGGCCTGTATGC 60.590 66.667 32.80 20.57 40.29 3.14
80 81 2.591753 GAGCAGGGCCTGTATGCA 59.408 61.111 32.80 0.00 42.45 3.96
81 82 1.821332 GAGCAGGGCCTGTATGCAC 60.821 63.158 32.80 15.58 42.45 4.57
82 83 2.830370 GCAGGGCCTGTATGCACC 60.830 66.667 32.80 12.15 39.75 5.01
83 84 2.514592 CAGGGCCTGTATGCACCG 60.515 66.667 25.74 0.00 34.27 4.94
84 85 3.797353 AGGGCCTGTATGCACCGG 61.797 66.667 4.50 0.00 34.27 5.28
85 86 3.792736 GGGCCTGTATGCACCGGA 61.793 66.667 9.46 0.00 30.89 5.14
86 87 2.203070 GGCCTGTATGCACCGGAG 60.203 66.667 9.46 0.00 30.89 4.63
87 88 2.897350 GCCTGTATGCACCGGAGC 60.897 66.667 17.78 17.78 30.89 4.70
88 89 2.586079 CCTGTATGCACCGGAGCG 60.586 66.667 19.24 4.08 37.31 5.03
89 90 2.184322 CTGTATGCACCGGAGCGT 59.816 61.111 22.37 22.37 37.31 5.07
90 91 2.125713 TGTATGCACCGGAGCGTG 60.126 61.111 26.41 7.15 37.31 5.34
105 106 2.347490 GTGCCCACGACATCACCT 59.653 61.111 0.00 0.00 0.00 4.00
106 107 2.034879 GTGCCCACGACATCACCTG 61.035 63.158 0.00 0.00 0.00 4.00
107 108 2.347490 GCCCACGACATCACCTGT 59.653 61.111 0.00 0.00 42.15 4.00
108 109 2.034879 GCCCACGACATCACCTGTG 61.035 63.158 0.00 0.00 38.54 3.66
109 110 1.671166 CCCACGACATCACCTGTGA 59.329 57.895 1.93 1.93 44.59 3.58
110 111 0.670546 CCCACGACATCACCTGTGAC 60.671 60.000 1.39 0.00 43.11 3.67
111 112 0.670546 CCACGACATCACCTGTGACC 60.671 60.000 1.39 0.00 43.11 4.02
112 113 0.318441 CACGACATCACCTGTGACCT 59.682 55.000 1.39 0.00 43.11 3.85
113 114 0.318441 ACGACATCACCTGTGACCTG 59.682 55.000 1.39 0.89 43.11 4.00
114 115 1.016130 CGACATCACCTGTGACCTGC 61.016 60.000 1.39 0.00 43.11 4.85
115 116 0.322975 GACATCACCTGTGACCTGCT 59.677 55.000 1.39 0.00 43.11 4.24
116 117 0.322975 ACATCACCTGTGACCTGCTC 59.677 55.000 1.39 0.00 43.11 4.26
117 118 0.738762 CATCACCTGTGACCTGCTCG 60.739 60.000 1.39 0.00 43.11 5.03
118 119 0.900182 ATCACCTGTGACCTGCTCGA 60.900 55.000 1.39 0.00 43.11 4.04
119 120 1.373497 CACCTGTGACCTGCTCGAC 60.373 63.158 0.00 0.00 0.00 4.20
120 121 2.126307 CCTGTGACCTGCTCGACG 60.126 66.667 0.00 0.00 0.00 5.12
121 122 2.626780 CCTGTGACCTGCTCGACGA 61.627 63.158 0.00 0.00 0.00 4.20
122 123 1.285950 CTGTGACCTGCTCGACGAA 59.714 57.895 0.00 0.00 0.00 3.85
123 124 0.318699 CTGTGACCTGCTCGACGAAA 60.319 55.000 0.00 0.00 0.00 3.46
124 125 0.317160 TGTGACCTGCTCGACGAAAT 59.683 50.000 0.00 0.00 0.00 2.17
125 126 0.716108 GTGACCTGCTCGACGAAATG 59.284 55.000 0.00 0.00 0.00 2.32
126 127 1.014044 TGACCTGCTCGACGAAATGC 61.014 55.000 0.00 0.00 0.00 3.56
127 128 1.696832 GACCTGCTCGACGAAATGCC 61.697 60.000 0.00 0.00 0.00 4.40
128 129 2.697425 CTGCTCGACGAAATGCCG 59.303 61.111 0.00 0.00 0.00 5.69
129 130 3.425938 CTGCTCGACGAAATGCCGC 62.426 63.158 0.00 0.00 0.00 6.53
130 131 3.188786 GCTCGACGAAATGCCGCT 61.189 61.111 0.00 0.00 0.00 5.52
131 132 2.697425 CTCGACGAAATGCCGCTG 59.303 61.111 0.00 0.00 0.00 5.18
132 133 3.425938 CTCGACGAAATGCCGCTGC 62.426 63.158 0.00 0.00 38.26 5.25
133 134 4.520846 CGACGAAATGCCGCTGCC 62.521 66.667 0.00 0.00 36.33 4.85
134 135 3.127533 GACGAAATGCCGCTGCCT 61.128 61.111 0.00 0.00 36.33 4.75
135 136 1.813753 GACGAAATGCCGCTGCCTA 60.814 57.895 0.00 0.00 36.33 3.93
136 137 2.036764 GACGAAATGCCGCTGCCTAC 62.037 60.000 0.00 0.00 36.33 3.18
137 138 1.815421 CGAAATGCCGCTGCCTACT 60.815 57.895 0.00 0.00 36.33 2.57
138 139 1.369091 CGAAATGCCGCTGCCTACTT 61.369 55.000 0.00 0.00 36.33 2.24
139 140 0.099436 GAAATGCCGCTGCCTACTTG 59.901 55.000 0.00 0.00 36.33 3.16
140 141 0.322456 AAATGCCGCTGCCTACTTGA 60.322 50.000 0.00 0.00 36.33 3.02
141 142 0.745845 AATGCCGCTGCCTACTTGAG 60.746 55.000 0.00 0.00 36.33 3.02
142 143 3.198489 GCCGCTGCCTACTTGAGC 61.198 66.667 0.00 0.00 0.00 4.26
143 144 2.512515 CCGCTGCCTACTTGAGCC 60.513 66.667 0.00 0.00 0.00 4.70
144 145 2.581354 CGCTGCCTACTTGAGCCT 59.419 61.111 0.00 0.00 0.00 4.58
145 146 1.520342 CGCTGCCTACTTGAGCCTC 60.520 63.158 0.00 0.00 0.00 4.70
146 147 1.599047 GCTGCCTACTTGAGCCTCA 59.401 57.895 0.00 0.00 0.00 3.86
147 148 0.036010 GCTGCCTACTTGAGCCTCAA 60.036 55.000 7.00 7.00 34.79 3.02
148 149 1.731720 CTGCCTACTTGAGCCTCAAC 58.268 55.000 2.24 0.00 32.21 3.18
149 150 1.002430 CTGCCTACTTGAGCCTCAACA 59.998 52.381 2.24 0.00 32.21 3.33
150 151 1.270839 TGCCTACTTGAGCCTCAACAC 60.271 52.381 2.24 0.00 32.21 3.32
151 152 1.002544 GCCTACTTGAGCCTCAACACT 59.997 52.381 2.24 0.00 32.21 3.55
152 153 2.693069 CCTACTTGAGCCTCAACACTG 58.307 52.381 2.24 0.00 32.21 3.66
153 154 2.072298 CTACTTGAGCCTCAACACTGC 58.928 52.381 2.24 0.00 32.21 4.40
154 155 0.471617 ACTTGAGCCTCAACACTGCT 59.528 50.000 2.24 0.00 38.24 4.24
156 157 4.292784 GAGCCTCAACACTGCTCC 57.707 61.111 0.00 0.00 44.45 4.70
157 158 1.676384 GAGCCTCAACACTGCTCCT 59.324 57.895 0.00 0.00 44.45 3.69
158 159 0.673022 GAGCCTCAACACTGCTCCTG 60.673 60.000 0.00 0.00 44.45 3.86
159 160 1.673665 GCCTCAACACTGCTCCTGG 60.674 63.158 0.00 0.00 0.00 4.45
160 161 1.002868 CCTCAACACTGCTCCTGGG 60.003 63.158 0.00 0.00 0.00 4.45
161 162 1.002868 CTCAACACTGCTCCTGGGG 60.003 63.158 0.00 0.00 0.00 4.96
162 163 2.034687 CAACACTGCTCCTGGGGG 59.965 66.667 0.00 0.00 0.00 5.40
178 179 2.975799 GGGCGCAACGAGTGGAAA 60.976 61.111 10.83 0.00 0.00 3.13
179 180 2.556287 GGCGCAACGAGTGGAAAG 59.444 61.111 10.83 0.00 0.00 2.62
180 181 1.959226 GGCGCAACGAGTGGAAAGA 60.959 57.895 10.83 0.00 0.00 2.52
181 182 1.298859 GGCGCAACGAGTGGAAAGAT 61.299 55.000 10.83 0.00 0.00 2.40
182 183 0.517316 GCGCAACGAGTGGAAAGATT 59.483 50.000 0.30 0.00 0.00 2.40
183 184 1.069227 GCGCAACGAGTGGAAAGATTT 60.069 47.619 0.30 0.00 0.00 2.17
184 185 2.158841 GCGCAACGAGTGGAAAGATTTA 59.841 45.455 0.30 0.00 0.00 1.40
185 186 3.732943 CGCAACGAGTGGAAAGATTTAC 58.267 45.455 0.00 0.00 0.00 2.01
186 187 3.720920 CGCAACGAGTGGAAAGATTTACG 60.721 47.826 0.00 0.00 0.00 3.18
187 188 3.732943 CAACGAGTGGAAAGATTTACGC 58.267 45.455 0.00 0.00 0.00 4.42
188 189 2.344025 ACGAGTGGAAAGATTTACGCC 58.656 47.619 0.00 0.00 31.87 5.68
189 190 1.664151 CGAGTGGAAAGATTTACGCCC 59.336 52.381 0.00 0.00 31.87 6.13
190 191 2.014857 GAGTGGAAAGATTTACGCCCC 58.985 52.381 0.00 0.00 31.87 5.80
191 192 1.353022 AGTGGAAAGATTTACGCCCCA 59.647 47.619 0.00 0.00 31.87 4.96
192 193 1.743394 GTGGAAAGATTTACGCCCCAG 59.257 52.381 0.00 0.00 0.00 4.45
193 194 1.340600 TGGAAAGATTTACGCCCCAGG 60.341 52.381 0.00 0.00 0.00 4.45
194 195 0.738975 GAAAGATTTACGCCCCAGGC 59.261 55.000 0.00 0.00 46.75 4.85
213 214 4.260194 AAAAATTTCGCCGGCAGC 57.740 50.000 28.98 0.00 38.52 5.25
214 215 1.374125 AAAAATTTCGCCGGCAGCC 60.374 52.632 28.98 0.00 38.78 4.85
215 216 2.779951 AAAAATTTCGCCGGCAGCCC 62.780 55.000 28.98 0.00 38.78 5.19
233 234 3.681473 CCCAAGGGGCGAAAGAAC 58.319 61.111 0.00 0.00 35.35 3.01
234 235 1.074951 CCCAAGGGGCGAAAGAACT 59.925 57.895 0.00 0.00 35.35 3.01
235 236 1.244019 CCCAAGGGGCGAAAGAACTG 61.244 60.000 0.00 0.00 35.35 3.16
236 237 1.581447 CAAGGGGCGAAAGAACTGC 59.419 57.895 0.00 0.00 0.00 4.40
240 241 3.579685 GGCGAAAGAACTGCCTCC 58.420 61.111 0.00 0.00 45.40 4.30
241 242 1.003233 GGCGAAAGAACTGCCTCCT 60.003 57.895 0.00 0.00 45.40 3.69
242 243 1.301677 GGCGAAAGAACTGCCTCCTG 61.302 60.000 0.00 0.00 45.40 3.86
243 244 1.301677 GCGAAAGAACTGCCTCCTGG 61.302 60.000 0.00 0.00 0.00 4.45
244 245 0.674895 CGAAAGAACTGCCTCCTGGG 60.675 60.000 0.00 0.00 38.36 4.45
245 246 0.322906 GAAAGAACTGCCTCCTGGGG 60.323 60.000 0.00 0.00 35.12 4.96
246 247 1.793820 AAAGAACTGCCTCCTGGGGG 61.794 60.000 8.74 8.74 35.12 5.40
247 248 2.936032 GAACTGCCTCCTGGGGGT 60.936 66.667 15.57 0.00 35.12 4.95
248 249 3.260100 AACTGCCTCCTGGGGGTG 61.260 66.667 15.57 10.25 35.12 4.61
253 254 4.366684 CCTCCTGGGGGTGCCAAC 62.367 72.222 3.76 0.00 0.00 3.77
254 255 4.722700 CTCCTGGGGGTGCCAACG 62.723 72.222 0.00 0.00 0.00 4.10
256 257 4.722700 CCTGGGGGTGCCAACGAG 62.723 72.222 0.00 0.00 0.00 4.18
257 258 3.953775 CTGGGGGTGCCAACGAGT 61.954 66.667 0.00 0.00 0.00 4.18
258 259 4.263572 TGGGGGTGCCAACGAGTG 62.264 66.667 0.00 0.00 0.00 3.51
282 283 4.290093 AGATGCTCTAAGACATGGTACCA 58.710 43.478 18.99 18.99 0.00 3.25
317 322 0.512952 GGCAACACGTACTTGCTGAG 59.487 55.000 22.58 0.00 43.08 3.35
322 327 0.038251 CACGTACTTGCTGAGAGCCA 60.038 55.000 0.00 0.00 41.51 4.75
327 332 3.932710 CGTACTTGCTGAGAGCCAAAATA 59.067 43.478 0.00 0.00 41.51 1.40
333 338 2.421424 GCTGAGAGCCAAAATACACCAG 59.579 50.000 0.00 0.00 34.48 4.00
338 343 3.153919 GAGCCAAAATACACCAGGAACA 58.846 45.455 0.00 0.00 0.00 3.18
363 368 3.492337 TGGGTTTTGTAGGTGTTGGATC 58.508 45.455 0.00 0.00 0.00 3.36
374 379 0.037326 TGTTGGATCAGAGACGGTGC 60.037 55.000 0.00 0.00 0.00 5.01
423 429 4.637091 ACCACCGTACCTGTAAATTTATGC 59.363 41.667 0.31 0.00 0.00 3.14
424 430 4.879545 CCACCGTACCTGTAAATTTATGCT 59.120 41.667 0.31 0.00 0.00 3.79
465 866 7.531857 TGACCTGTTTTATTATTGCTCCAAA 57.468 32.000 0.00 0.00 0.00 3.28
482 883 2.821969 CCAAAGATGGCCATATACCAGC 59.178 50.000 20.84 3.93 44.04 4.85
484 885 3.159298 GATGGCCATATACCAGCGG 57.841 57.895 20.84 0.00 41.46 5.52
485 886 0.324943 GATGGCCATATACCAGCGGT 59.675 55.000 20.84 5.58 41.46 5.68
486 887 1.553248 GATGGCCATATACCAGCGGTA 59.447 52.381 20.84 9.38 42.80 4.02
488 889 1.553248 TGGCCATATACCAGCGGTATC 59.447 52.381 19.15 8.69 44.67 2.24
489 890 1.553248 GGCCATATACCAGCGGTATCA 59.447 52.381 19.15 9.82 44.67 2.15
490 891 2.618053 GCCATATACCAGCGGTATCAC 58.382 52.381 19.15 7.88 44.67 3.06
491 892 2.876091 CCATATACCAGCGGTATCACG 58.124 52.381 19.15 11.30 44.67 4.35
492 893 2.490509 CCATATACCAGCGGTATCACGA 59.509 50.000 19.15 6.87 44.67 4.35
493 894 3.427638 CCATATACCAGCGGTATCACGAG 60.428 52.174 19.15 9.22 44.67 4.18
494 895 0.314302 ATACCAGCGGTATCACGAGC 59.686 55.000 12.60 0.00 44.67 5.03
495 896 1.033202 TACCAGCGGTATCACGAGCA 61.033 55.000 3.72 0.00 37.09 4.26
496 897 1.589993 CCAGCGGTATCACGAGCAG 60.590 63.158 0.00 0.00 35.47 4.24
497 898 1.433471 CAGCGGTATCACGAGCAGA 59.567 57.895 0.00 0.00 35.47 4.26
498 899 0.031314 CAGCGGTATCACGAGCAGAT 59.969 55.000 0.00 0.00 35.47 2.90
499 900 0.312416 AGCGGTATCACGAGCAGATC 59.688 55.000 0.00 0.00 35.47 2.75
500 901 0.664767 GCGGTATCACGAGCAGATCC 60.665 60.000 0.00 0.00 35.47 3.36
501 902 0.668535 CGGTATCACGAGCAGATCCA 59.331 55.000 0.00 0.00 35.47 3.41
502 903 1.335415 CGGTATCACGAGCAGATCCAG 60.335 57.143 0.00 0.00 35.47 3.86
503 904 1.683917 GGTATCACGAGCAGATCCAGT 59.316 52.381 0.00 0.00 0.00 4.00
504 905 2.885266 GGTATCACGAGCAGATCCAGTA 59.115 50.000 0.00 0.00 0.00 2.74
505 906 3.318275 GGTATCACGAGCAGATCCAGTAA 59.682 47.826 0.00 0.00 0.00 2.24
506 907 4.202121 GGTATCACGAGCAGATCCAGTAAA 60.202 45.833 0.00 0.00 0.00 2.01
507 908 3.510388 TCACGAGCAGATCCAGTAAAG 57.490 47.619 0.00 0.00 0.00 1.85
508 909 2.826128 TCACGAGCAGATCCAGTAAAGT 59.174 45.455 0.00 0.00 0.00 2.66
509 910 4.014406 TCACGAGCAGATCCAGTAAAGTA 58.986 43.478 0.00 0.00 0.00 2.24
510 911 4.461431 TCACGAGCAGATCCAGTAAAGTAA 59.539 41.667 0.00 0.00 0.00 2.24
511 912 5.127194 TCACGAGCAGATCCAGTAAAGTAAT 59.873 40.000 0.00 0.00 0.00 1.89
512 913 5.812642 CACGAGCAGATCCAGTAAAGTAATT 59.187 40.000 0.00 0.00 0.00 1.40
513 914 6.313905 CACGAGCAGATCCAGTAAAGTAATTT 59.686 38.462 0.00 0.00 0.00 1.82
514 915 6.313905 ACGAGCAGATCCAGTAAAGTAATTTG 59.686 38.462 0.00 0.00 0.00 2.32
515 916 6.238211 CGAGCAGATCCAGTAAAGTAATTTGG 60.238 42.308 0.00 0.00 0.00 3.28
516 917 6.485171 AGCAGATCCAGTAAAGTAATTTGGT 58.515 36.000 0.00 0.00 0.00 3.67
517 918 6.948309 AGCAGATCCAGTAAAGTAATTTGGTT 59.052 34.615 0.00 0.00 0.00 3.67
518 919 7.029563 GCAGATCCAGTAAAGTAATTTGGTTG 58.970 38.462 0.00 0.00 0.00 3.77
519 920 7.538575 CAGATCCAGTAAAGTAATTTGGTTGG 58.461 38.462 0.00 3.89 0.00 3.77
520 921 7.176690 CAGATCCAGTAAAGTAATTTGGTTGGT 59.823 37.037 0.00 0.00 0.00 3.67
521 922 7.728532 AGATCCAGTAAAGTAATTTGGTTGGTT 59.271 33.333 0.00 0.00 0.00 3.67
522 923 7.045126 TCCAGTAAAGTAATTTGGTTGGTTG 57.955 36.000 0.00 0.00 0.00 3.77
523 924 6.041069 TCCAGTAAAGTAATTTGGTTGGTTGG 59.959 38.462 0.00 0.00 0.00 3.77
524 925 6.183360 CCAGTAAAGTAATTTGGTTGGTTGGT 60.183 38.462 0.00 0.00 0.00 3.67
525 926 7.269316 CAGTAAAGTAATTTGGTTGGTTGGTT 58.731 34.615 0.00 0.00 0.00 3.67
526 927 7.223777 CAGTAAAGTAATTTGGTTGGTTGGTTG 59.776 37.037 0.00 0.00 0.00 3.77
527 928 4.681074 AGTAATTTGGTTGGTTGGTTGG 57.319 40.909 0.00 0.00 0.00 3.77
528 929 4.034410 AGTAATTTGGTTGGTTGGTTGGT 58.966 39.130 0.00 0.00 0.00 3.67
529 930 4.471747 AGTAATTTGGTTGGTTGGTTGGTT 59.528 37.500 0.00 0.00 0.00 3.67
530 931 2.770164 TTTGGTTGGTTGGTTGGTTG 57.230 45.000 0.00 0.00 0.00 3.77
531 932 1.938585 TTGGTTGGTTGGTTGGTTGA 58.061 45.000 0.00 0.00 0.00 3.18
532 933 1.938585 TGGTTGGTTGGTTGGTTGAA 58.061 45.000 0.00 0.00 0.00 2.69
533 934 1.550976 TGGTTGGTTGGTTGGTTGAAC 59.449 47.619 0.00 0.00 0.00 3.18
534 935 1.828595 GGTTGGTTGGTTGGTTGAACT 59.171 47.619 0.00 0.00 34.66 3.01
535 936 2.418060 GGTTGGTTGGTTGGTTGAACTG 60.418 50.000 0.00 0.00 34.66 3.16
536 937 1.479709 TGGTTGGTTGGTTGAACTGG 58.520 50.000 0.00 0.00 34.66 4.00
537 938 1.006043 TGGTTGGTTGGTTGAACTGGA 59.994 47.619 0.00 0.00 34.66 3.86
538 939 1.681264 GGTTGGTTGGTTGAACTGGAG 59.319 52.381 0.00 0.00 34.66 3.86
539 940 1.067060 GTTGGTTGGTTGAACTGGAGC 59.933 52.381 0.00 0.00 34.66 4.70
540 941 0.550914 TGGTTGGTTGAACTGGAGCT 59.449 50.000 0.00 0.00 34.66 4.09
541 942 1.064017 TGGTTGGTTGAACTGGAGCTT 60.064 47.619 0.00 0.00 34.66 3.74
542 943 1.609072 GGTTGGTTGAACTGGAGCTTC 59.391 52.381 0.00 0.00 34.66 3.86
543 944 2.576615 GTTGGTTGAACTGGAGCTTCT 58.423 47.619 0.00 0.00 0.00 2.85
544 945 2.952310 GTTGGTTGAACTGGAGCTTCTT 59.048 45.455 0.00 0.00 0.00 2.52
545 946 2.851195 TGGTTGAACTGGAGCTTCTTC 58.149 47.619 0.00 0.00 0.00 2.87
546 947 2.439507 TGGTTGAACTGGAGCTTCTTCT 59.560 45.455 0.00 0.00 0.00 2.85
547 948 3.117888 TGGTTGAACTGGAGCTTCTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
548 949 3.885901 GGTTGAACTGGAGCTTCTTCTTT 59.114 43.478 0.00 0.00 0.00 2.52
549 950 4.261363 GGTTGAACTGGAGCTTCTTCTTTG 60.261 45.833 0.00 0.00 0.00 2.77
550 951 4.156455 TGAACTGGAGCTTCTTCTTTGT 57.844 40.909 0.00 0.00 0.00 2.83
551 952 4.130118 TGAACTGGAGCTTCTTCTTTGTC 58.870 43.478 0.00 0.00 0.00 3.18
552 953 3.845781 ACTGGAGCTTCTTCTTTGTCA 57.154 42.857 0.00 0.00 0.00 3.58
553 954 3.471680 ACTGGAGCTTCTTCTTTGTCAC 58.528 45.455 0.00 0.00 0.00 3.67
554 955 2.810852 CTGGAGCTTCTTCTTTGTCACC 59.189 50.000 0.00 0.00 0.00 4.02
555 956 2.155279 GGAGCTTCTTCTTTGTCACCC 58.845 52.381 0.00 0.00 0.00 4.61
556 957 1.801178 GAGCTTCTTCTTTGTCACCCG 59.199 52.381 0.00 0.00 0.00 5.28
557 958 0.238553 GCTTCTTCTTTGTCACCCGC 59.761 55.000 0.00 0.00 0.00 6.13
558 959 1.593196 CTTCTTCTTTGTCACCCGCA 58.407 50.000 0.00 0.00 0.00 5.69
559 960 1.946768 CTTCTTCTTTGTCACCCGCAA 59.053 47.619 0.00 0.00 0.00 4.85
560 961 1.593196 TCTTCTTTGTCACCCGCAAG 58.407 50.000 0.00 0.00 0.00 4.01
561 962 0.040067 CTTCTTTGTCACCCGCAAGC 60.040 55.000 0.00 0.00 0.00 4.01
562 963 1.781025 TTCTTTGTCACCCGCAAGCG 61.781 55.000 7.60 7.60 39.44 4.68
579 980 4.324991 GGGACCCCGTCACACCAC 62.325 72.222 0.00 0.00 35.79 4.16
580 981 4.324991 GGACCCCGTCACACCACC 62.325 72.222 0.00 0.00 33.68 4.61
581 982 3.552384 GACCCCGTCACACCACCA 61.552 66.667 0.00 0.00 32.09 4.17
582 983 3.530910 GACCCCGTCACACCACCAG 62.531 68.421 0.00 0.00 32.09 4.00
583 984 3.238497 CCCCGTCACACCACCAGA 61.238 66.667 0.00 0.00 0.00 3.86
584 985 2.030562 CCCGTCACACCACCAGAC 59.969 66.667 0.00 0.00 0.00 3.51
585 986 2.802724 CCCGTCACACCACCAGACA 61.803 63.158 0.00 0.00 32.68 3.41
586 987 1.594293 CCGTCACACCACCAGACAC 60.594 63.158 0.00 0.00 32.68 3.67
587 988 1.594293 CGTCACACCACCAGACACC 60.594 63.158 0.00 0.00 32.68 4.16
588 989 1.594293 GTCACACCACCAGACACCG 60.594 63.158 0.00 0.00 32.68 4.94
589 990 2.061578 TCACACCACCAGACACCGT 61.062 57.895 0.00 0.00 0.00 4.83
590 991 1.594293 CACACCACCAGACACCGTC 60.594 63.158 0.00 0.00 0.00 4.79
591 992 2.061578 ACACCACCAGACACCGTCA 61.062 57.895 0.00 0.00 34.60 4.35
592 993 1.300931 CACCACCAGACACCGTCAG 60.301 63.158 0.00 0.00 34.60 3.51
593 994 2.343758 CCACCAGACACCGTCAGG 59.656 66.667 4.20 4.20 43.47 3.86
594 995 2.357517 CACCAGACACCGTCAGGC 60.358 66.667 5.55 0.00 41.94 4.85
595 996 2.842462 ACCAGACACCGTCAGGCA 60.842 61.111 5.55 0.00 41.94 4.75
596 997 2.425592 CCAGACACCGTCAGGCAA 59.574 61.111 0.00 0.00 42.76 4.52
597 998 1.669115 CCAGACACCGTCAGGCAAG 60.669 63.158 0.00 0.00 42.76 4.01
598 999 1.367471 CAGACACCGTCAGGCAAGA 59.633 57.895 0.00 0.00 42.76 3.02
599 1000 0.036952 CAGACACCGTCAGGCAAGAT 60.037 55.000 0.00 0.00 42.76 2.40
600 1001 0.036952 AGACACCGTCAGGCAAGATG 60.037 55.000 0.00 0.00 42.76 2.90
601 1002 1.639298 GACACCGTCAGGCAAGATGC 61.639 60.000 0.00 0.00 42.76 3.91
619 1020 2.493030 CGCGTCCCGTGGTAATCT 59.507 61.111 0.00 0.00 33.47 2.40
620 1021 1.876714 CGCGTCCCGTGGTAATCTG 60.877 63.158 0.00 0.00 33.47 2.90
621 1022 1.520787 GCGTCCCGTGGTAATCTGG 60.521 63.158 0.00 0.00 0.00 3.86
622 1023 1.520787 CGTCCCGTGGTAATCTGGC 60.521 63.158 0.00 0.00 0.00 4.85
623 1024 1.905512 GTCCCGTGGTAATCTGGCT 59.094 57.895 0.00 0.00 0.00 4.75
624 1025 0.462047 GTCCCGTGGTAATCTGGCTG 60.462 60.000 0.00 0.00 0.00 4.85
625 1026 0.616395 TCCCGTGGTAATCTGGCTGA 60.616 55.000 0.00 0.00 0.00 4.26
626 1027 0.179073 CCCGTGGTAATCTGGCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
627 1028 0.179073 CCGTGGTAATCTGGCTGAGG 60.179 60.000 0.00 0.00 0.00 3.86
628 1029 0.179073 CGTGGTAATCTGGCTGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
629 1030 0.464554 GTGGTAATCTGGCTGAGGGC 60.465 60.000 0.00 0.00 40.90 5.19
661 1062 3.771491 GCGACGCTGTGTGCTGAG 61.771 66.667 13.73 0.00 40.11 3.35
662 1063 2.050077 CGACGCTGTGTGCTGAGA 60.050 61.111 0.00 0.00 40.11 3.27
663 1064 2.085262 CGACGCTGTGTGCTGAGAG 61.085 63.158 0.00 0.00 40.11 3.20
664 1065 1.287191 GACGCTGTGTGCTGAGAGA 59.713 57.895 0.00 0.00 40.11 3.10
665 1066 0.108898 GACGCTGTGTGCTGAGAGAT 60.109 55.000 0.00 0.00 40.11 2.75
666 1067 0.319728 ACGCTGTGTGCTGAGAGATT 59.680 50.000 0.00 0.00 40.11 2.40
667 1068 0.720027 CGCTGTGTGCTGAGAGATTG 59.280 55.000 0.00 0.00 40.11 2.67
668 1069 1.085091 GCTGTGTGCTGAGAGATTGG 58.915 55.000 0.00 0.00 38.95 3.16
669 1070 1.735386 CTGTGTGCTGAGAGATTGGG 58.265 55.000 0.00 0.00 0.00 4.12
670 1071 1.277273 CTGTGTGCTGAGAGATTGGGA 59.723 52.381 0.00 0.00 0.00 4.37
671 1072 1.911357 TGTGTGCTGAGAGATTGGGAT 59.089 47.619 0.00 0.00 0.00 3.85
672 1073 2.093288 TGTGTGCTGAGAGATTGGGATC 60.093 50.000 0.00 0.00 0.00 3.36
673 1074 2.093288 GTGTGCTGAGAGATTGGGATCA 60.093 50.000 0.00 0.00 34.60 2.92
674 1075 2.775960 TGTGCTGAGAGATTGGGATCAT 59.224 45.455 0.00 0.00 34.60 2.45
675 1076 3.181457 TGTGCTGAGAGATTGGGATCATC 60.181 47.826 0.00 0.00 34.60 2.92
676 1077 2.036862 TGCTGAGAGATTGGGATCATCG 59.963 50.000 0.00 0.00 34.60 3.84
677 1078 2.298446 GCTGAGAGATTGGGATCATCGA 59.702 50.000 0.00 0.00 34.60 3.59
678 1079 3.055963 GCTGAGAGATTGGGATCATCGAT 60.056 47.826 0.00 0.00 34.60 3.59
679 1080 4.746729 CTGAGAGATTGGGATCATCGATC 58.253 47.826 0.00 1.43 38.25 3.69
680 1081 4.414677 TGAGAGATTGGGATCATCGATCT 58.585 43.478 14.36 14.36 38.91 2.75
681 1082 4.837298 TGAGAGATTGGGATCATCGATCTT 59.163 41.667 15.16 8.52 38.91 2.40
682 1083 6.012745 TGAGAGATTGGGATCATCGATCTTA 58.987 40.000 15.16 6.69 38.91 2.10
683 1084 6.071672 TGAGAGATTGGGATCATCGATCTTAC 60.072 42.308 15.16 12.99 38.91 2.34
684 1085 5.777223 AGAGATTGGGATCATCGATCTTACA 59.223 40.000 15.16 0.00 38.91 2.41
685 1086 6.035368 AGATTGGGATCATCGATCTTACAG 57.965 41.667 0.00 0.00 38.91 2.74
686 1087 5.777223 AGATTGGGATCATCGATCTTACAGA 59.223 40.000 0.00 0.00 38.91 3.41
687 1088 6.440010 AGATTGGGATCATCGATCTTACAGAT 59.560 38.462 0.00 0.00 38.91 2.90
688 1089 5.397142 TGGGATCATCGATCTTACAGATG 57.603 43.478 0.00 2.17 42.11 2.90
724 1127 6.903534 ACCTATTTCTCCATTCTCTCAACCTA 59.096 38.462 0.00 0.00 0.00 3.08
730 1133 4.175962 TCCATTCTCTCAACCTAAACCCT 58.824 43.478 0.00 0.00 0.00 4.34
750 1153 3.470709 CTGGTTGCTTTCTGTCTCTTCA 58.529 45.455 0.00 0.00 0.00 3.02
759 1162 1.971357 TCTGTCTCTTCACCAACCTCC 59.029 52.381 0.00 0.00 0.00 4.30
762 1165 1.376037 CTCTTCACCAACCTCCGGC 60.376 63.158 0.00 0.00 0.00 6.13
764 1167 1.376037 CTTCACCAACCTCCGGCTC 60.376 63.158 0.00 0.00 0.00 4.70
801 1204 0.606401 TCTGTTGTGCAAGCCCTAGC 60.606 55.000 0.00 0.00 40.32 3.42
828 1236 2.047274 GCACTCTTGCCGCTACCA 60.047 61.111 0.00 0.00 43.66 3.25
991 1411 3.577805 AATGTACATAACCCAGCCTCC 57.422 47.619 9.21 0.00 0.00 4.30
992 1412 2.263895 TGTACATAACCCAGCCTCCT 57.736 50.000 0.00 0.00 0.00 3.69
993 1413 2.116238 TGTACATAACCCAGCCTCCTC 58.884 52.381 0.00 0.00 0.00 3.71
1002 1422 1.695597 CAGCCTCCTCCCCTCCATT 60.696 63.158 0.00 0.00 0.00 3.16
1010 1430 1.340405 CCTCCCCTCCATTGACAACAG 60.340 57.143 0.00 0.00 0.00 3.16
1013 1433 0.323725 CCCTCCATTGACAACAGGGG 60.324 60.000 16.43 10.08 0.00 4.79
1031 1451 0.789383 GGTCGCTTGACAAAATCGCG 60.789 55.000 11.97 11.97 44.74 5.87
1032 1452 1.154488 TCGCTTGACAAAATCGCGC 60.154 52.632 13.04 0.00 43.14 6.86
1033 1453 1.440188 CGCTTGACAAAATCGCGCA 60.440 52.632 8.75 0.00 37.29 6.09
1034 1454 1.655697 CGCTTGACAAAATCGCGCAC 61.656 55.000 8.75 0.00 37.29 5.34
1035 1455 1.655697 GCTTGACAAAATCGCGCACG 61.656 55.000 8.75 0.00 42.01 5.34
1427 1862 2.037251 CTCCTTCCCTTCTTTGTGACGA 59.963 50.000 0.00 0.00 0.00 4.20
1457 1904 6.687531 CGAGAAAGAAGATGAATTTGCTGATG 59.312 38.462 0.00 0.00 0.00 3.07
1468 1915 6.215121 TGAATTTGCTGATGTGAATTTCGTT 58.785 32.000 0.00 0.00 0.00 3.85
1469 1916 6.144241 TGAATTTGCTGATGTGAATTTCGTTG 59.856 34.615 0.00 0.00 0.00 4.10
1470 1917 4.566545 TTGCTGATGTGAATTTCGTTGT 57.433 36.364 0.00 0.00 0.00 3.32
1518 1965 2.119029 GGCCAACGATTACCTGGGC 61.119 63.158 0.00 0.00 46.96 5.36
1614 2062 1.563435 CGATGCCAGATCCGCATGTC 61.563 60.000 19.61 8.68 46.76 3.06
1619 2067 1.332195 CCAGATCCGCATGTCTAGGA 58.668 55.000 0.00 0.00 38.56 2.94
1620 2068 1.688735 CCAGATCCGCATGTCTAGGAA 59.311 52.381 0.00 0.00 37.62 3.36
1621 2069 2.103094 CCAGATCCGCATGTCTAGGAAA 59.897 50.000 0.00 0.00 37.62 3.13
1622 2070 3.432186 CCAGATCCGCATGTCTAGGAAAA 60.432 47.826 0.00 0.00 37.62 2.29
1623 2071 3.806521 CAGATCCGCATGTCTAGGAAAAG 59.193 47.826 0.00 0.00 37.62 2.27
1624 2072 3.706594 AGATCCGCATGTCTAGGAAAAGA 59.293 43.478 0.00 0.00 37.62 2.52
1625 2073 3.973206 TCCGCATGTCTAGGAAAAGAA 57.027 42.857 0.00 0.00 0.00 2.52
1626 2074 4.280436 TCCGCATGTCTAGGAAAAGAAA 57.720 40.909 0.00 0.00 0.00 2.52
1627 2075 4.647611 TCCGCATGTCTAGGAAAAGAAAA 58.352 39.130 0.00 0.00 0.00 2.29
1628 2076 5.067273 TCCGCATGTCTAGGAAAAGAAAAA 58.933 37.500 0.00 0.00 0.00 1.94
1629 2077 5.710099 TCCGCATGTCTAGGAAAAGAAAAAT 59.290 36.000 0.00 0.00 0.00 1.82
1630 2078 5.801947 CCGCATGTCTAGGAAAAGAAAAATG 59.198 40.000 0.00 0.00 0.00 2.32
1631 2079 5.287035 CGCATGTCTAGGAAAAGAAAAATGC 59.713 40.000 0.00 0.00 36.59 3.56
1632 2080 6.393171 GCATGTCTAGGAAAAGAAAAATGCT 58.607 36.000 0.00 0.00 36.78 3.79
1633 2081 6.529477 GCATGTCTAGGAAAAGAAAAATGCTC 59.471 38.462 0.00 0.00 36.78 4.26
1634 2082 7.596494 CATGTCTAGGAAAAGAAAAATGCTCA 58.404 34.615 0.00 0.00 0.00 4.26
1635 2083 7.206981 TGTCTAGGAAAAGAAAAATGCTCAG 57.793 36.000 0.00 0.00 0.00 3.35
1636 2084 6.772716 TGTCTAGGAAAAGAAAAATGCTCAGT 59.227 34.615 0.00 0.00 0.00 3.41
1637 2085 7.080724 GTCTAGGAAAAGAAAAATGCTCAGTG 58.919 38.462 0.00 0.00 0.00 3.66
1638 2086 5.205759 AGGAAAAGAAAAATGCTCAGTGG 57.794 39.130 0.00 0.00 0.00 4.00
1639 2087 4.651045 AGGAAAAGAAAAATGCTCAGTGGT 59.349 37.500 0.00 0.00 0.00 4.16
1640 2088 5.129320 AGGAAAAGAAAAATGCTCAGTGGTT 59.871 36.000 0.00 0.00 0.00 3.67
1641 2089 5.463392 GGAAAAGAAAAATGCTCAGTGGTTC 59.537 40.000 0.00 0.00 0.00 3.62
1642 2090 5.596836 AAAGAAAAATGCTCAGTGGTTCA 57.403 34.783 0.00 0.00 0.00 3.18
1643 2091 5.796424 AAGAAAAATGCTCAGTGGTTCAT 57.204 34.783 0.00 0.00 0.00 2.57
1644 2092 6.899393 AAGAAAAATGCTCAGTGGTTCATA 57.101 33.333 0.00 0.00 0.00 2.15
1645 2093 7.472334 AAGAAAAATGCTCAGTGGTTCATAT 57.528 32.000 0.00 0.00 0.00 1.78
1646 2094 7.472334 AGAAAAATGCTCAGTGGTTCATATT 57.528 32.000 0.00 0.00 0.00 1.28
1647 2095 7.899973 AGAAAAATGCTCAGTGGTTCATATTT 58.100 30.769 0.00 0.00 0.00 1.40
1648 2096 8.370182 AGAAAAATGCTCAGTGGTTCATATTTT 58.630 29.630 0.00 0.00 0.00 1.82
1649 2097 8.907222 AAAAATGCTCAGTGGTTCATATTTTT 57.093 26.923 0.00 0.00 33.89 1.94
1708 2156 7.582435 ACAGGCATATTATAAAGATTCGTCG 57.418 36.000 0.00 0.00 0.00 5.12
1709 2157 6.590292 ACAGGCATATTATAAAGATTCGTCGG 59.410 38.462 0.00 0.00 0.00 4.79
1710 2158 6.811665 CAGGCATATTATAAAGATTCGTCGGA 59.188 38.462 0.00 0.00 0.00 4.55
1711 2159 7.492669 CAGGCATATTATAAAGATTCGTCGGAT 59.507 37.037 0.00 0.00 0.00 4.18
1712 2160 7.492669 AGGCATATTATAAAGATTCGTCGGATG 59.507 37.037 0.00 0.00 0.00 3.51
1713 2161 7.277981 GGCATATTATAAAGATTCGTCGGATGT 59.722 37.037 0.00 0.00 0.00 3.06
1714 2162 9.297586 GCATATTATAAAGATTCGTCGGATGTA 57.702 33.333 0.00 0.00 0.00 2.29
1718 2166 8.929827 TTATAAAGATTCGTCGGATGTACAAA 57.070 30.769 0.00 0.00 0.00 2.83
1719 2167 5.779806 AAAGATTCGTCGGATGTACAAAG 57.220 39.130 0.00 0.00 0.00 2.77
1720 2168 3.187700 AGATTCGTCGGATGTACAAAGC 58.812 45.455 0.00 0.00 0.00 3.51
1721 2169 2.442212 TTCGTCGGATGTACAAAGCA 57.558 45.000 0.00 0.00 0.00 3.91
1722 2170 1.705256 TCGTCGGATGTACAAAGCAC 58.295 50.000 0.00 0.00 0.00 4.40
1723 2171 0.719465 CGTCGGATGTACAAAGCACC 59.281 55.000 0.00 0.00 0.00 5.01
1724 2172 1.084289 GTCGGATGTACAAAGCACCC 58.916 55.000 0.00 0.00 0.00 4.61
1725 2173 0.981183 TCGGATGTACAAAGCACCCT 59.019 50.000 0.00 0.00 0.00 4.34
1726 2174 1.086696 CGGATGTACAAAGCACCCTG 58.913 55.000 0.00 0.00 0.00 4.45
1727 2175 1.338674 CGGATGTACAAAGCACCCTGA 60.339 52.381 0.00 0.00 0.00 3.86
1728 2176 2.084546 GGATGTACAAAGCACCCTGAC 58.915 52.381 0.00 0.00 0.00 3.51
1729 2177 2.552155 GGATGTACAAAGCACCCTGACA 60.552 50.000 0.00 0.00 0.00 3.58
1730 2178 2.949177 TGTACAAAGCACCCTGACAT 57.051 45.000 0.00 0.00 0.00 3.06
1731 2179 4.513442 GATGTACAAAGCACCCTGACATA 58.487 43.478 0.00 0.00 0.00 2.29
1732 2180 4.359434 TGTACAAAGCACCCTGACATAA 57.641 40.909 0.00 0.00 0.00 1.90
1733 2181 4.917385 TGTACAAAGCACCCTGACATAAT 58.083 39.130 0.00 0.00 0.00 1.28
1734 2182 6.056090 TGTACAAAGCACCCTGACATAATA 57.944 37.500 0.00 0.00 0.00 0.98
1735 2183 6.477253 TGTACAAAGCACCCTGACATAATAA 58.523 36.000 0.00 0.00 0.00 1.40
1736 2184 6.943146 TGTACAAAGCACCCTGACATAATAAA 59.057 34.615 0.00 0.00 0.00 1.40
1737 2185 6.909550 ACAAAGCACCCTGACATAATAAAA 57.090 33.333 0.00 0.00 0.00 1.52
1738 2186 7.296628 ACAAAGCACCCTGACATAATAAAAA 57.703 32.000 0.00 0.00 0.00 1.94
1739 2187 7.906327 ACAAAGCACCCTGACATAATAAAAAT 58.094 30.769 0.00 0.00 0.00 1.82
1740 2188 8.374743 ACAAAGCACCCTGACATAATAAAAATT 58.625 29.630 0.00 0.00 0.00 1.82
1741 2189 8.872845 CAAAGCACCCTGACATAATAAAAATTC 58.127 33.333 0.00 0.00 0.00 2.17
1742 2190 7.961326 AGCACCCTGACATAATAAAAATTCT 57.039 32.000 0.00 0.00 0.00 2.40
1743 2191 8.366359 AGCACCCTGACATAATAAAAATTCTT 57.634 30.769 0.00 0.00 0.00 2.52
1744 2192 8.253113 AGCACCCTGACATAATAAAAATTCTTG 58.747 33.333 0.00 0.00 0.00 3.02
1745 2193 8.250332 GCACCCTGACATAATAAAAATTCTTGA 58.750 33.333 0.00 0.00 0.00 3.02
1781 2229 8.687824 GTGCATACACAACTATTTAGCAAAAT 57.312 30.769 0.00 0.00 46.61 1.82
1782 2230 9.139174 GTGCATACACAACTATTTAGCAAAATT 57.861 29.630 0.00 0.00 46.61 1.82
1783 2231 9.138062 TGCATACACAACTATTTAGCAAAATTG 57.862 29.630 0.00 0.00 36.67 2.32
1784 2232 9.352784 GCATACACAACTATTTAGCAAAATTGA 57.647 29.630 0.00 0.00 36.67 2.57
1786 2234 7.873739 ACACAACTATTTAGCAAAATTGAGC 57.126 32.000 0.00 0.00 36.67 4.26
1787 2235 6.582295 ACACAACTATTTAGCAAAATTGAGCG 59.418 34.615 0.00 0.00 36.67 5.03
1788 2236 6.033831 CACAACTATTTAGCAAAATTGAGCGG 59.966 38.462 0.00 0.00 36.67 5.52
1789 2237 4.672409 ACTATTTAGCAAAATTGAGCGGC 58.328 39.130 0.00 0.00 36.67 6.53
1790 2238 2.362169 TTTAGCAAAATTGAGCGGCC 57.638 45.000 0.00 0.00 35.48 6.13
1791 2239 0.170116 TTAGCAAAATTGAGCGGCCG 59.830 50.000 24.05 24.05 35.48 6.13
1792 2240 1.653094 TAGCAAAATTGAGCGGCCGG 61.653 55.000 29.38 8.95 35.48 6.13
1793 2241 2.506881 CAAAATTGAGCGGCCGGC 60.507 61.111 29.38 21.18 44.05 6.13
1810 2258 3.775654 CTCTCACCAGGGGCGGAC 61.776 72.222 0.00 0.00 0.00 4.79
1821 2269 4.167597 GGCGGACCCAGAACAAAA 57.832 55.556 0.00 0.00 0.00 2.44
1822 2270 2.421220 GGCGGACCCAGAACAAAAA 58.579 52.632 0.00 0.00 0.00 1.94
1823 2271 0.966179 GGCGGACCCAGAACAAAAAT 59.034 50.000 0.00 0.00 0.00 1.82
1824 2272 1.336795 GGCGGACCCAGAACAAAAATG 60.337 52.381 0.00 0.00 0.00 2.32
1825 2273 1.339929 GCGGACCCAGAACAAAAATGT 59.660 47.619 0.00 0.00 0.00 2.71
1826 2274 2.607038 GCGGACCCAGAACAAAAATGTC 60.607 50.000 0.00 0.00 0.00 3.06
1827 2275 2.030274 CGGACCCAGAACAAAAATGTCC 60.030 50.000 0.00 0.00 37.91 4.02
1828 2276 2.299013 GGACCCAGAACAAAAATGTCCC 59.701 50.000 0.00 0.00 35.80 4.46
1829 2277 1.960689 ACCCAGAACAAAAATGTCCCG 59.039 47.619 0.00 0.00 0.00 5.14
1830 2278 1.272212 CCCAGAACAAAAATGTCCCGG 59.728 52.381 0.00 0.00 0.00 5.73
1831 2279 1.960689 CCAGAACAAAAATGTCCCGGT 59.039 47.619 0.00 0.00 0.00 5.28
1832 2280 2.288152 CCAGAACAAAAATGTCCCGGTG 60.288 50.000 0.00 0.00 0.00 4.94
1833 2281 2.360801 CAGAACAAAAATGTCCCGGTGT 59.639 45.455 0.00 0.00 0.00 4.16
1834 2282 2.621526 AGAACAAAAATGTCCCGGTGTC 59.378 45.455 0.00 0.00 0.00 3.67
1835 2283 1.324383 ACAAAAATGTCCCGGTGTCC 58.676 50.000 0.00 0.00 0.00 4.02
1836 2284 0.601057 CAAAAATGTCCCGGTGTCCC 59.399 55.000 0.00 0.00 0.00 4.46
1837 2285 0.186386 AAAAATGTCCCGGTGTCCCA 59.814 50.000 0.00 0.00 0.00 4.37
1838 2286 0.407918 AAAATGTCCCGGTGTCCCAT 59.592 50.000 0.00 0.00 0.00 4.00
1839 2287 0.323360 AAATGTCCCGGTGTCCCATG 60.323 55.000 0.00 0.00 0.00 3.66
1840 2288 1.497309 AATGTCCCGGTGTCCCATGT 61.497 55.000 0.00 0.00 0.00 3.21
1841 2289 1.910580 ATGTCCCGGTGTCCCATGTC 61.911 60.000 0.00 0.00 0.00 3.06
1842 2290 2.121832 TCCCGGTGTCCCATGTCT 59.878 61.111 0.00 0.00 0.00 3.41
1843 2291 0.974010 GTCCCGGTGTCCCATGTCTA 60.974 60.000 0.00 0.00 0.00 2.59
1844 2292 0.031515 TCCCGGTGTCCCATGTCTAT 60.032 55.000 0.00 0.00 0.00 1.98
1845 2293 0.837272 CCCGGTGTCCCATGTCTATT 59.163 55.000 0.00 0.00 0.00 1.73
1846 2294 1.475034 CCCGGTGTCCCATGTCTATTG 60.475 57.143 0.00 0.00 0.00 1.90
1847 2295 1.299541 CGGTGTCCCATGTCTATTGC 58.700 55.000 0.00 0.00 0.00 3.56
1848 2296 1.406751 CGGTGTCCCATGTCTATTGCA 60.407 52.381 0.00 0.00 0.00 4.08
1849 2297 2.746142 CGGTGTCCCATGTCTATTGCAT 60.746 50.000 0.00 0.00 0.00 3.96
1850 2298 3.494223 CGGTGTCCCATGTCTATTGCATA 60.494 47.826 0.00 0.00 0.00 3.14
1851 2299 3.815401 GGTGTCCCATGTCTATTGCATAC 59.185 47.826 0.00 0.00 0.00 2.39
1852 2300 4.444876 GGTGTCCCATGTCTATTGCATACT 60.445 45.833 0.00 0.00 0.00 2.12
1853 2301 5.126067 GTGTCCCATGTCTATTGCATACTT 58.874 41.667 0.00 0.00 0.00 2.24
1854 2302 6.288294 GTGTCCCATGTCTATTGCATACTTA 58.712 40.000 0.00 0.00 0.00 2.24
1855 2303 6.936900 GTGTCCCATGTCTATTGCATACTTAT 59.063 38.462 0.00 0.00 0.00 1.73
1856 2304 6.936335 TGTCCCATGTCTATTGCATACTTATG 59.064 38.462 0.00 0.00 36.78 1.90
1857 2305 6.372659 GTCCCATGTCTATTGCATACTTATGG 59.627 42.308 8.57 8.57 34.32 2.74
1858 2306 6.272090 TCCCATGTCTATTGCATACTTATGGA 59.728 38.462 14.35 0.00 35.69 3.41
1859 2307 7.037370 TCCCATGTCTATTGCATACTTATGGAT 60.037 37.037 14.35 0.00 35.69 3.41
1860 2308 8.267183 CCCATGTCTATTGCATACTTATGGATA 58.733 37.037 14.35 0.71 35.69 2.59
1861 2309 9.842775 CCATGTCTATTGCATACTTATGGATAT 57.157 33.333 9.51 0.00 35.69 1.63
2096 2546 1.664873 CCAACGGCCATGCAAAAGA 59.335 52.632 2.24 0.00 0.00 2.52
2137 2587 3.009723 CCATAGCCAAACTGTCAACGAT 58.990 45.455 0.00 0.00 0.00 3.73
2144 2594 1.078709 AACTGTCAACGATCATGCCG 58.921 50.000 5.91 5.91 0.00 5.69
2465 2978 1.856597 CGAGGACGAAGAAACGTGTTT 59.143 47.619 0.00 0.00 46.52 2.83
2676 3194 1.674441 GCTATCAAACGGGGCCTTAAC 59.326 52.381 0.84 0.00 0.00 2.01
2677 3195 2.942306 GCTATCAAACGGGGCCTTAACA 60.942 50.000 0.84 0.00 0.00 2.41
2678 3196 1.834188 ATCAAACGGGGCCTTAACAG 58.166 50.000 0.84 0.00 0.00 3.16
2679 3197 0.475044 TCAAACGGGGCCTTAACAGT 59.525 50.000 0.84 0.00 0.00 3.55
2680 3198 1.133730 TCAAACGGGGCCTTAACAGTT 60.134 47.619 0.84 0.00 0.00 3.16
2681 3199 1.268625 CAAACGGGGCCTTAACAGTTC 59.731 52.381 0.84 0.00 0.00 3.01
2682 3200 0.475044 AACGGGGCCTTAACAGTTCA 59.525 50.000 0.84 0.00 0.00 3.18
2683 3201 0.475044 ACGGGGCCTTAACAGTTCAA 59.525 50.000 0.84 0.00 0.00 2.69
2684 3202 1.074889 ACGGGGCCTTAACAGTTCAAT 59.925 47.619 0.84 0.00 0.00 2.57
2685 3203 2.306512 ACGGGGCCTTAACAGTTCAATA 59.693 45.455 0.84 0.00 0.00 1.90
2686 3204 3.053917 ACGGGGCCTTAACAGTTCAATAT 60.054 43.478 0.84 0.00 0.00 1.28
2687 3205 3.315191 CGGGGCCTTAACAGTTCAATATG 59.685 47.826 0.84 0.00 0.00 1.78
2688 3206 4.278310 GGGGCCTTAACAGTTCAATATGT 58.722 43.478 0.84 0.00 0.00 2.29
2689 3207 5.442391 GGGGCCTTAACAGTTCAATATGTA 58.558 41.667 0.84 0.00 0.00 2.29
2690 3208 6.068670 GGGGCCTTAACAGTTCAATATGTAT 58.931 40.000 0.84 0.00 0.00 2.29
2691 3209 7.228590 GGGGCCTTAACAGTTCAATATGTATA 58.771 38.462 0.84 0.00 0.00 1.47
2692 3210 7.390718 GGGGCCTTAACAGTTCAATATGTATAG 59.609 40.741 0.84 0.00 0.00 1.31
2693 3211 8.154856 GGGCCTTAACAGTTCAATATGTATAGA 58.845 37.037 0.84 0.00 0.00 1.98
2694 3212 9.555727 GGCCTTAACAGTTCAATATGTATAGAA 57.444 33.333 0.00 0.00 0.00 2.10
2700 3218 9.444600 AACAGTTCAATATGTATAGAAAACCGT 57.555 29.630 0.00 0.00 0.00 4.83
2701 3219 8.879759 ACAGTTCAATATGTATAGAAAACCGTG 58.120 33.333 0.00 0.00 0.00 4.94
2702 3220 8.879759 CAGTTCAATATGTATAGAAAACCGTGT 58.120 33.333 0.00 0.00 0.00 4.49
2712 3230 9.926158 TGTATAGAAAACCGTGTAATAGTGAAA 57.074 29.630 0.00 0.00 0.00 2.69
2717 3235 9.498176 AGAAAACCGTGTAATAGTGAAAATACT 57.502 29.630 0.00 0.00 34.71 2.12
2721 3239 9.709495 AACCGTGTAATAGTGAAAATACTTACA 57.291 29.630 0.00 0.00 32.19 2.41
2722 3240 9.143631 ACCGTGTAATAGTGAAAATACTTACAC 57.856 33.333 11.44 11.44 39.36 2.90
2723 3241 9.142515 CCGTGTAATAGTGAAAATACTTACACA 57.857 33.333 18.12 3.47 41.01 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.373116 TCCGGCGAGGTTGTGCTC 62.373 66.667 9.30 0.00 41.99 4.26
2 3 4.681978 GTCCGGCGAGGTTGTGCT 62.682 66.667 9.30 0.00 41.99 4.40
3 4 4.681978 AGTCCGGCGAGGTTGTGC 62.682 66.667 9.30 0.00 41.99 4.57
4 5 2.432628 GAGTCCGGCGAGGTTGTG 60.433 66.667 9.30 0.00 41.99 3.33
5 6 4.052229 CGAGTCCGGCGAGGTTGT 62.052 66.667 9.30 0.00 41.99 3.32
9 10 4.856607 GAAGCGAGTCCGGCGAGG 62.857 72.222 9.30 0.00 42.97 4.63
10 11 4.856607 GGAAGCGAGTCCGGCGAG 62.857 72.222 9.30 0.00 36.06 5.03
12 13 4.856607 GAGGAAGCGAGTCCGGCG 62.857 72.222 0.00 0.00 43.03 6.46
13 14 4.516195 GGAGGAAGCGAGTCCGGC 62.516 72.222 0.00 0.00 43.03 6.13
14 15 3.839432 GGGAGGAAGCGAGTCCGG 61.839 72.222 0.00 0.00 43.03 5.14
15 16 3.839432 GGGGAGGAAGCGAGTCCG 61.839 72.222 0.00 0.00 43.03 4.79
16 17 0.686769 TAAGGGGAGGAAGCGAGTCC 60.687 60.000 0.00 0.00 38.03 3.85
17 18 0.460722 GTAAGGGGAGGAAGCGAGTC 59.539 60.000 0.00 0.00 0.00 3.36
18 19 0.976590 GGTAAGGGGAGGAAGCGAGT 60.977 60.000 0.00 0.00 0.00 4.18
19 20 0.688087 AGGTAAGGGGAGGAAGCGAG 60.688 60.000 0.00 0.00 0.00 5.03
20 21 0.686769 GAGGTAAGGGGAGGAAGCGA 60.687 60.000 0.00 0.00 0.00 4.93
21 22 0.688087 AGAGGTAAGGGGAGGAAGCG 60.688 60.000 0.00 0.00 0.00 4.68
22 23 1.124780 GAGAGGTAAGGGGAGGAAGC 58.875 60.000 0.00 0.00 0.00 3.86
23 24 1.008449 TGGAGAGGTAAGGGGAGGAAG 59.992 57.143 0.00 0.00 0.00 3.46
24 25 1.098589 TGGAGAGGTAAGGGGAGGAA 58.901 55.000 0.00 0.00 0.00 3.36
25 26 1.098589 TTGGAGAGGTAAGGGGAGGA 58.901 55.000 0.00 0.00 0.00 3.71
26 27 1.966845 TTTGGAGAGGTAAGGGGAGG 58.033 55.000 0.00 0.00 0.00 4.30
27 28 2.173569 CCATTTGGAGAGGTAAGGGGAG 59.826 54.545 0.00 0.00 37.39 4.30
28 29 2.205342 CCATTTGGAGAGGTAAGGGGA 58.795 52.381 0.00 0.00 37.39 4.81
29 30 2.205342 TCCATTTGGAGAGGTAAGGGG 58.795 52.381 0.00 0.00 39.78 4.79
40 41 1.299648 CGCAGTCCCTCCATTTGGA 59.700 57.895 0.00 0.00 43.08 3.53
41 42 1.002134 ACGCAGTCCCTCCATTTGG 60.002 57.895 0.00 0.00 29.74 3.28
42 43 4.722193 ACGCAGTCCCTCCATTTG 57.278 55.556 0.00 0.00 29.74 2.32
60 61 4.227134 ATACAGGCCCTGCTCGCG 62.227 66.667 11.63 0.00 34.37 5.87
61 62 2.590007 CATACAGGCCCTGCTCGC 60.590 66.667 11.63 0.00 34.37 5.03
62 63 2.590007 GCATACAGGCCCTGCTCG 60.590 66.667 11.63 0.00 34.37 5.03
63 64 1.821332 GTGCATACAGGCCCTGCTC 60.821 63.158 11.63 9.99 36.84 4.26
64 65 2.273449 GTGCATACAGGCCCTGCT 59.727 61.111 11.63 0.51 36.84 4.24
65 66 2.830370 GGTGCATACAGGCCCTGC 60.830 66.667 11.63 4.51 34.37 4.85
66 67 2.514592 CGGTGCATACAGGCCCTG 60.515 66.667 9.83 9.83 37.52 4.45
67 68 3.797353 CCGGTGCATACAGGCCCT 61.797 66.667 0.00 0.00 35.38 5.19
68 69 3.757248 CTCCGGTGCATACAGGCCC 62.757 68.421 0.00 0.00 41.33 5.80
69 70 2.203070 CTCCGGTGCATACAGGCC 60.203 66.667 0.00 0.00 41.33 5.19
70 71 2.897350 GCTCCGGTGCATACAGGC 60.897 66.667 23.09 1.20 41.33 4.85
71 72 2.586079 CGCTCCGGTGCATACAGG 60.586 66.667 26.64 6.85 42.72 4.00
72 73 2.167219 CACGCTCCGGTGCATACAG 61.167 63.158 26.64 13.18 0.00 2.74
73 74 2.125713 CACGCTCCGGTGCATACA 60.126 61.111 26.64 0.00 0.00 2.29
88 89 2.034879 CAGGTGATGTCGTGGGCAC 61.035 63.158 0.00 0.00 0.00 5.01
89 90 2.347114 CAGGTGATGTCGTGGGCA 59.653 61.111 0.00 0.00 0.00 5.36
90 91 2.034879 CACAGGTGATGTCGTGGGC 61.035 63.158 0.00 0.00 41.41 5.36
91 92 0.670546 GTCACAGGTGATGTCGTGGG 60.671 60.000 5.29 0.00 41.41 4.61
92 93 0.670546 GGTCACAGGTGATGTCGTGG 60.671 60.000 5.29 0.00 41.41 4.94
93 94 0.318441 AGGTCACAGGTGATGTCGTG 59.682 55.000 5.29 0.00 41.41 4.35
94 95 0.318441 CAGGTCACAGGTGATGTCGT 59.682 55.000 5.29 0.00 41.41 4.34
95 96 1.016130 GCAGGTCACAGGTGATGTCG 61.016 60.000 5.29 0.00 41.41 4.35
96 97 0.322975 AGCAGGTCACAGGTGATGTC 59.677 55.000 5.29 0.00 41.41 3.06
97 98 0.322975 GAGCAGGTCACAGGTGATGT 59.677 55.000 5.29 0.00 45.43 3.06
98 99 0.738762 CGAGCAGGTCACAGGTGATG 60.739 60.000 5.29 2.25 42.18 3.07
99 100 0.900182 TCGAGCAGGTCACAGGTGAT 60.900 55.000 5.29 0.00 42.18 3.06
100 101 1.530655 TCGAGCAGGTCACAGGTGA 60.531 57.895 0.00 0.00 37.24 4.02
101 102 1.373497 GTCGAGCAGGTCACAGGTG 60.373 63.158 0.00 0.00 0.00 4.00
102 103 2.920645 CGTCGAGCAGGTCACAGGT 61.921 63.158 0.00 0.00 0.00 4.00
103 104 2.126307 CGTCGAGCAGGTCACAGG 60.126 66.667 0.00 0.00 0.00 4.00
104 105 0.318699 TTTCGTCGAGCAGGTCACAG 60.319 55.000 0.00 0.00 0.00 3.66
105 106 0.317160 ATTTCGTCGAGCAGGTCACA 59.683 50.000 0.00 0.00 0.00 3.58
106 107 0.716108 CATTTCGTCGAGCAGGTCAC 59.284 55.000 0.00 0.00 0.00 3.67
107 108 1.014044 GCATTTCGTCGAGCAGGTCA 61.014 55.000 0.00 0.00 0.00 4.02
108 109 1.696832 GGCATTTCGTCGAGCAGGTC 61.697 60.000 7.20 0.00 0.00 3.85
109 110 1.741770 GGCATTTCGTCGAGCAGGT 60.742 57.895 7.20 0.00 0.00 4.00
110 111 3.093278 GGCATTTCGTCGAGCAGG 58.907 61.111 7.20 0.00 0.00 4.85
117 118 1.813753 TAGGCAGCGGCATTTCGTC 60.814 57.895 11.88 0.00 43.71 4.20
118 119 2.106683 GTAGGCAGCGGCATTTCGT 61.107 57.895 11.88 0.00 43.71 3.85
119 120 1.369091 AAGTAGGCAGCGGCATTTCG 61.369 55.000 11.88 0.00 43.71 3.46
120 121 0.099436 CAAGTAGGCAGCGGCATTTC 59.901 55.000 11.88 0.67 43.71 2.17
121 122 0.322456 TCAAGTAGGCAGCGGCATTT 60.322 50.000 11.88 0.00 43.71 2.32
122 123 0.745845 CTCAAGTAGGCAGCGGCATT 60.746 55.000 11.88 0.32 43.71 3.56
123 124 1.153289 CTCAAGTAGGCAGCGGCAT 60.153 57.895 11.88 6.11 43.71 4.40
124 125 2.265739 CTCAAGTAGGCAGCGGCA 59.734 61.111 11.88 0.00 43.71 5.69
125 126 3.198489 GCTCAAGTAGGCAGCGGC 61.198 66.667 0.00 0.00 40.13 6.53
132 133 2.693069 CAGTGTTGAGGCTCAAGTAGG 58.307 52.381 29.22 15.70 37.00 3.18
133 134 2.072298 GCAGTGTTGAGGCTCAAGTAG 58.928 52.381 29.22 19.25 37.00 2.57
134 135 1.694150 AGCAGTGTTGAGGCTCAAGTA 59.306 47.619 29.22 18.47 37.00 2.24
135 136 0.471617 AGCAGTGTTGAGGCTCAAGT 59.528 50.000 29.22 14.63 37.00 3.16
136 137 3.319135 AGCAGTGTTGAGGCTCAAG 57.681 52.632 29.22 18.38 37.00 3.02
140 141 1.374190 CAGGAGCAGTGTTGAGGCT 59.626 57.895 0.00 0.00 41.35 4.58
141 142 1.673665 CCAGGAGCAGTGTTGAGGC 60.674 63.158 0.00 0.00 0.00 4.70
142 143 1.002868 CCCAGGAGCAGTGTTGAGG 60.003 63.158 0.00 0.00 0.00 3.86
143 144 1.002868 CCCCAGGAGCAGTGTTGAG 60.003 63.158 0.00 0.00 0.00 3.02
144 145 2.528818 CCCCCAGGAGCAGTGTTGA 61.529 63.158 0.00 0.00 33.47 3.18
145 146 2.034687 CCCCCAGGAGCAGTGTTG 59.965 66.667 0.00 0.00 33.47 3.33
161 162 2.966309 CTTTCCACTCGTTGCGCCC 61.966 63.158 4.18 0.00 0.00 6.13
162 163 1.298859 ATCTTTCCACTCGTTGCGCC 61.299 55.000 4.18 0.00 0.00 6.53
163 164 0.517316 AATCTTTCCACTCGTTGCGC 59.483 50.000 0.00 0.00 0.00 6.09
164 165 2.969443 AAATCTTTCCACTCGTTGCG 57.031 45.000 0.00 0.00 0.00 4.85
165 166 3.732943 CGTAAATCTTTCCACTCGTTGC 58.267 45.455 0.00 0.00 0.00 4.17
166 167 3.424433 GGCGTAAATCTTTCCACTCGTTG 60.424 47.826 0.00 0.00 0.00 4.10
167 168 2.740447 GGCGTAAATCTTTCCACTCGTT 59.260 45.455 0.00 0.00 0.00 3.85
168 169 2.344025 GGCGTAAATCTTTCCACTCGT 58.656 47.619 0.00 0.00 0.00 4.18
169 170 1.664151 GGGCGTAAATCTTTCCACTCG 59.336 52.381 0.00 0.00 0.00 4.18
170 171 2.014857 GGGGCGTAAATCTTTCCACTC 58.985 52.381 0.00 0.00 0.00 3.51
171 172 1.353022 TGGGGCGTAAATCTTTCCACT 59.647 47.619 0.00 0.00 0.00 4.00
172 173 1.743394 CTGGGGCGTAAATCTTTCCAC 59.257 52.381 0.00 0.00 0.00 4.02
173 174 1.340600 CCTGGGGCGTAAATCTTTCCA 60.341 52.381 0.00 0.00 0.00 3.53
174 175 1.389555 CCTGGGGCGTAAATCTTTCC 58.610 55.000 0.00 0.00 0.00 3.13
175 176 0.738975 GCCTGGGGCGTAAATCTTTC 59.261 55.000 0.00 0.00 39.62 2.62
176 177 2.882170 GCCTGGGGCGTAAATCTTT 58.118 52.632 0.00 0.00 39.62 2.52
177 178 4.657952 GCCTGGGGCGTAAATCTT 57.342 55.556 0.00 0.00 39.62 2.40
196 197 1.374125 GGCTGCCGGCGAAATTTTT 60.374 52.632 23.90 0.00 42.94 1.94
197 198 2.261361 GGCTGCCGGCGAAATTTT 59.739 55.556 23.90 0.00 42.94 1.82
198 199 3.758931 GGGCTGCCGGCGAAATTT 61.759 61.111 23.90 0.00 42.94 1.82
215 216 1.977009 GTTCTTTCGCCCCTTGGGG 60.977 63.158 20.18 20.18 44.57 4.96
217 218 1.866853 GCAGTTCTTTCGCCCCTTGG 61.867 60.000 0.00 0.00 0.00 3.61
218 219 1.581447 GCAGTTCTTTCGCCCCTTG 59.419 57.895 0.00 0.00 0.00 3.61
219 220 1.603739 GGCAGTTCTTTCGCCCCTT 60.604 57.895 0.00 0.00 40.07 3.95
220 221 2.034221 GGCAGTTCTTTCGCCCCT 59.966 61.111 0.00 0.00 40.07 4.79
223 224 1.003233 AGGAGGCAGTTCTTTCGCC 60.003 57.895 0.00 0.00 46.62 5.54
224 225 1.301677 CCAGGAGGCAGTTCTTTCGC 61.302 60.000 0.00 0.00 0.00 4.70
225 226 0.674895 CCCAGGAGGCAGTTCTTTCG 60.675 60.000 0.00 0.00 0.00 3.46
226 227 0.322906 CCCCAGGAGGCAGTTCTTTC 60.323 60.000 0.00 0.00 0.00 2.62
227 228 1.770324 CCCCAGGAGGCAGTTCTTT 59.230 57.895 0.00 0.00 0.00 2.52
228 229 2.234296 CCCCCAGGAGGCAGTTCTT 61.234 63.158 0.00 0.00 33.47 2.52
229 230 2.612115 CCCCCAGGAGGCAGTTCT 60.612 66.667 0.00 0.00 33.47 3.01
230 231 2.936032 ACCCCCAGGAGGCAGTTC 60.936 66.667 0.00 0.00 36.73 3.01
231 232 3.260100 CACCCCCAGGAGGCAGTT 61.260 66.667 0.00 0.00 36.73 3.16
236 237 4.366684 GTTGGCACCCCCAGGAGG 62.367 72.222 0.00 0.00 46.39 4.30
237 238 4.722700 CGTTGGCACCCCCAGGAG 62.723 72.222 0.00 0.00 46.39 3.69
239 240 4.722700 CTCGTTGGCACCCCCAGG 62.723 72.222 0.00 0.00 46.39 4.45
240 241 3.953775 ACTCGTTGGCACCCCCAG 61.954 66.667 0.00 0.00 46.39 4.45
241 242 4.263572 CACTCGTTGGCACCCCCA 62.264 66.667 0.00 0.00 43.51 4.96
243 244 3.901797 CTCCACTCGTTGGCACCCC 62.902 68.421 0.00 0.00 46.47 4.95
244 245 2.185310 ATCTCCACTCGTTGGCACCC 62.185 60.000 0.00 0.00 46.47 4.61
245 246 1.021390 CATCTCCACTCGTTGGCACC 61.021 60.000 0.00 0.00 46.47 5.01
246 247 1.639298 GCATCTCCACTCGTTGGCAC 61.639 60.000 0.00 0.00 46.47 5.01
247 248 1.375908 GCATCTCCACTCGTTGGCA 60.376 57.895 1.35 0.00 46.47 4.92
248 249 1.078848 AGCATCTCCACTCGTTGGC 60.079 57.895 1.35 0.00 46.47 4.52
258 259 7.927678 ATGGTACCATGTCTTAGAGCATCTCC 61.928 46.154 26.82 0.00 39.22 3.71
259 260 5.011533 ATGGTACCATGTCTTAGAGCATCTC 59.988 44.000 26.82 0.00 39.22 2.75
260 261 4.904251 ATGGTACCATGTCTTAGAGCATCT 59.096 41.667 26.82 0.00 41.68 2.90
261 262 4.672587 TGGTACCATGTCTTAGAGCATC 57.327 45.455 11.60 0.00 0.00 3.91
262 263 4.965814 CATGGTACCATGTCTTAGAGCAT 58.034 43.478 36.87 8.25 46.20 3.79
263 264 4.406648 CATGGTACCATGTCTTAGAGCA 57.593 45.455 36.87 4.50 46.20 4.26
293 294 1.064952 GCAAGTACGTGTTGCCACTTT 59.935 47.619 20.95 0.00 43.80 2.66
294 295 0.661020 GCAAGTACGTGTTGCCACTT 59.339 50.000 20.95 9.28 43.80 3.16
295 296 2.317230 GCAAGTACGTGTTGCCACT 58.683 52.632 20.95 3.63 43.80 4.00
300 301 1.457303 GCTCTCAGCAAGTACGTGTTG 59.543 52.381 17.25 17.25 41.89 3.33
301 302 1.605712 GGCTCTCAGCAAGTACGTGTT 60.606 52.381 10.54 1.15 44.75 3.32
304 309 0.679505 TTGGCTCTCAGCAAGTACGT 59.320 50.000 0.00 0.00 44.75 3.57
317 322 3.153919 TGTTCCTGGTGTATTTTGGCTC 58.846 45.455 0.00 0.00 0.00 4.70
322 327 6.260663 ACCCAATATGTTCCTGGTGTATTTT 58.739 36.000 0.00 0.00 0.00 1.82
327 332 3.825908 AACCCAATATGTTCCTGGTGT 57.174 42.857 0.00 0.00 0.00 4.16
333 338 5.479027 ACACCTACAAAACCCAATATGTTCC 59.521 40.000 0.00 0.00 0.00 3.62
338 343 5.646215 TCCAACACCTACAAAACCCAATAT 58.354 37.500 0.00 0.00 0.00 1.28
374 379 1.131126 GATTTGTGCCATGACACGGAG 59.869 52.381 7.68 0.00 43.74 4.63
423 429 7.271511 ACAGGTCAAGCATAGAAGATTAGAAG 58.728 38.462 0.00 0.00 0.00 2.85
424 430 7.187824 ACAGGTCAAGCATAGAAGATTAGAA 57.812 36.000 0.00 0.00 0.00 2.10
438 444 6.036470 GGAGCAATAATAAAACAGGTCAAGC 58.964 40.000 0.00 0.00 0.00 4.01
442 452 7.826690 TCTTTGGAGCAATAATAAAACAGGTC 58.173 34.615 0.00 0.00 0.00 3.85
465 866 0.615331 CCGCTGGTATATGGCCATCT 59.385 55.000 24.80 16.05 35.19 2.90
476 877 1.033202 TGCTCGTGATACCGCTGGTA 61.033 55.000 9.38 9.38 42.80 3.25
477 878 2.284798 CTGCTCGTGATACCGCTGGT 62.285 60.000 5.58 5.58 40.16 4.00
478 879 1.589993 CTGCTCGTGATACCGCTGG 60.590 63.158 0.00 0.00 0.00 4.85
479 880 0.031314 ATCTGCTCGTGATACCGCTG 59.969 55.000 0.00 0.00 0.00 5.18
480 881 0.312416 GATCTGCTCGTGATACCGCT 59.688 55.000 0.00 0.00 0.00 5.52
481 882 0.664767 GGATCTGCTCGTGATACCGC 60.665 60.000 0.00 0.00 0.00 5.68
482 883 0.668535 TGGATCTGCTCGTGATACCG 59.331 55.000 0.00 0.00 0.00 4.02
483 884 1.683917 ACTGGATCTGCTCGTGATACC 59.316 52.381 0.00 0.00 0.00 2.73
484 885 4.569761 TTACTGGATCTGCTCGTGATAC 57.430 45.455 0.00 0.00 0.00 2.24
485 886 4.645136 ACTTTACTGGATCTGCTCGTGATA 59.355 41.667 0.00 0.00 0.00 2.15
486 887 3.449018 ACTTTACTGGATCTGCTCGTGAT 59.551 43.478 0.00 0.00 0.00 3.06
487 888 2.826128 ACTTTACTGGATCTGCTCGTGA 59.174 45.455 0.00 0.00 0.00 4.35
488 889 3.238108 ACTTTACTGGATCTGCTCGTG 57.762 47.619 0.00 0.00 0.00 4.35
489 890 5.599999 ATTACTTTACTGGATCTGCTCGT 57.400 39.130 0.00 0.00 0.00 4.18
490 891 6.238211 CCAAATTACTTTACTGGATCTGCTCG 60.238 42.308 0.00 0.00 0.00 5.03
491 892 6.599638 ACCAAATTACTTTACTGGATCTGCTC 59.400 38.462 0.00 0.00 0.00 4.26
492 893 6.485171 ACCAAATTACTTTACTGGATCTGCT 58.515 36.000 0.00 0.00 0.00 4.24
493 894 6.759497 ACCAAATTACTTTACTGGATCTGC 57.241 37.500 0.00 0.00 0.00 4.26
494 895 7.176690 ACCAACCAAATTACTTTACTGGATCTG 59.823 37.037 0.00 0.00 0.00 2.90
495 896 7.238710 ACCAACCAAATTACTTTACTGGATCT 58.761 34.615 0.00 0.00 0.00 2.75
496 897 7.462571 ACCAACCAAATTACTTTACTGGATC 57.537 36.000 0.00 0.00 0.00 3.36
497 898 7.256154 CCAACCAACCAAATTACTTTACTGGAT 60.256 37.037 0.00 0.00 0.00 3.41
498 899 6.041069 CCAACCAACCAAATTACTTTACTGGA 59.959 38.462 0.00 0.00 0.00 3.86
499 900 6.183360 ACCAACCAACCAAATTACTTTACTGG 60.183 38.462 0.00 0.00 0.00 4.00
500 901 6.811954 ACCAACCAACCAAATTACTTTACTG 58.188 36.000 0.00 0.00 0.00 2.74
501 902 7.269316 CAACCAACCAACCAAATTACTTTACT 58.731 34.615 0.00 0.00 0.00 2.24
502 903 6.480651 CCAACCAACCAACCAAATTACTTTAC 59.519 38.462 0.00 0.00 0.00 2.01
503 904 6.156429 ACCAACCAACCAACCAAATTACTTTA 59.844 34.615 0.00 0.00 0.00 1.85
504 905 5.045505 ACCAACCAACCAACCAAATTACTTT 60.046 36.000 0.00 0.00 0.00 2.66
505 906 4.471747 ACCAACCAACCAACCAAATTACTT 59.528 37.500 0.00 0.00 0.00 2.24
506 907 4.034410 ACCAACCAACCAACCAAATTACT 58.966 39.130 0.00 0.00 0.00 2.24
507 908 4.409718 ACCAACCAACCAACCAAATTAC 57.590 40.909 0.00 0.00 0.00 1.89
508 909 4.469945 TCAACCAACCAACCAACCAAATTA 59.530 37.500 0.00 0.00 0.00 1.40
509 910 3.264450 TCAACCAACCAACCAACCAAATT 59.736 39.130 0.00 0.00 0.00 1.82
510 911 2.840651 TCAACCAACCAACCAACCAAAT 59.159 40.909 0.00 0.00 0.00 2.32
511 912 2.257207 TCAACCAACCAACCAACCAAA 58.743 42.857 0.00 0.00 0.00 3.28
512 913 1.938585 TCAACCAACCAACCAACCAA 58.061 45.000 0.00 0.00 0.00 3.67
513 914 1.550976 GTTCAACCAACCAACCAACCA 59.449 47.619 0.00 0.00 0.00 3.67
514 915 1.828595 AGTTCAACCAACCAACCAACC 59.171 47.619 0.00 0.00 35.28 3.77
515 916 2.418060 CCAGTTCAACCAACCAACCAAC 60.418 50.000 0.00 0.00 35.28 3.77
516 917 1.827969 CCAGTTCAACCAACCAACCAA 59.172 47.619 0.00 0.00 35.28 3.67
517 918 1.006043 TCCAGTTCAACCAACCAACCA 59.994 47.619 0.00 0.00 35.28 3.67
518 919 1.681264 CTCCAGTTCAACCAACCAACC 59.319 52.381 0.00 0.00 35.28 3.77
519 920 1.067060 GCTCCAGTTCAACCAACCAAC 59.933 52.381 0.00 0.00 35.28 3.77
520 921 1.064017 AGCTCCAGTTCAACCAACCAA 60.064 47.619 0.00 0.00 35.28 3.67
521 922 0.550914 AGCTCCAGTTCAACCAACCA 59.449 50.000 0.00 0.00 35.28 3.67
522 923 1.609072 GAAGCTCCAGTTCAACCAACC 59.391 52.381 0.00 0.00 35.28 3.77
523 924 2.576615 AGAAGCTCCAGTTCAACCAAC 58.423 47.619 0.00 0.00 34.86 3.77
524 925 3.117888 AGAAGAAGCTCCAGTTCAACCAA 60.118 43.478 0.00 0.00 0.00 3.67
525 926 2.439507 AGAAGAAGCTCCAGTTCAACCA 59.560 45.455 0.00 0.00 0.00 3.67
526 927 3.133141 AGAAGAAGCTCCAGTTCAACC 57.867 47.619 0.00 0.00 0.00 3.77
527 928 4.336713 ACAAAGAAGAAGCTCCAGTTCAAC 59.663 41.667 0.00 0.00 0.00 3.18
528 929 4.526970 ACAAAGAAGAAGCTCCAGTTCAA 58.473 39.130 0.00 0.00 0.00 2.69
529 930 4.130118 GACAAAGAAGAAGCTCCAGTTCA 58.870 43.478 0.00 0.00 0.00 3.18
530 931 4.024472 GTGACAAAGAAGAAGCTCCAGTTC 60.024 45.833 0.00 0.00 0.00 3.01
531 932 3.879892 GTGACAAAGAAGAAGCTCCAGTT 59.120 43.478 0.00 0.00 0.00 3.16
532 933 3.471680 GTGACAAAGAAGAAGCTCCAGT 58.528 45.455 0.00 0.00 0.00 4.00
533 934 2.810852 GGTGACAAAGAAGAAGCTCCAG 59.189 50.000 0.00 0.00 0.00 3.86
534 935 2.487265 GGGTGACAAAGAAGAAGCTCCA 60.487 50.000 0.00 0.00 0.00 3.86
535 936 2.155279 GGGTGACAAAGAAGAAGCTCC 58.845 52.381 0.00 0.00 0.00 4.70
536 937 1.801178 CGGGTGACAAAGAAGAAGCTC 59.199 52.381 0.00 0.00 0.00 4.09
537 938 1.884235 CGGGTGACAAAGAAGAAGCT 58.116 50.000 0.00 0.00 0.00 3.74
538 939 0.238553 GCGGGTGACAAAGAAGAAGC 59.761 55.000 0.00 0.00 0.00 3.86
539 940 1.593196 TGCGGGTGACAAAGAAGAAG 58.407 50.000 0.00 0.00 0.00 2.85
540 941 1.946768 CTTGCGGGTGACAAAGAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
541 942 1.593196 CTTGCGGGTGACAAAGAAGA 58.407 50.000 0.00 0.00 0.00 2.87
542 943 0.040067 GCTTGCGGGTGACAAAGAAG 60.040 55.000 0.00 0.00 0.00 2.85
543 944 1.781025 CGCTTGCGGGTGACAAAGAA 61.781 55.000 7.16 0.00 0.00 2.52
544 945 2.250939 CGCTTGCGGGTGACAAAGA 61.251 57.895 7.16 0.00 0.00 2.52
545 946 2.252260 CGCTTGCGGGTGACAAAG 59.748 61.111 7.16 0.00 0.00 2.77
546 947 3.283684 CCGCTTGCGGGTGACAAA 61.284 61.111 24.53 0.00 0.00 2.83
562 963 4.324991 GTGGTGTGACGGGGTCCC 62.325 72.222 0.00 0.00 0.00 4.46
563 964 4.324991 GGTGGTGTGACGGGGTCC 62.325 72.222 0.00 0.00 0.00 4.46
564 965 3.530910 CTGGTGGTGTGACGGGGTC 62.531 68.421 0.00 0.00 0.00 4.46
565 966 3.556306 CTGGTGGTGTGACGGGGT 61.556 66.667 0.00 0.00 0.00 4.95
566 967 3.238497 TCTGGTGGTGTGACGGGG 61.238 66.667 0.00 0.00 0.00 5.73
567 968 2.030562 GTCTGGTGGTGTGACGGG 59.969 66.667 0.00 0.00 0.00 5.28
568 969 1.594293 GTGTCTGGTGGTGTGACGG 60.594 63.158 0.00 0.00 33.81 4.79
569 970 1.594293 GGTGTCTGGTGGTGTGACG 60.594 63.158 0.00 0.00 33.81 4.35
570 971 1.594293 CGGTGTCTGGTGGTGTGAC 60.594 63.158 0.00 0.00 0.00 3.67
571 972 2.023414 GACGGTGTCTGGTGGTGTGA 62.023 60.000 0.00 0.00 0.00 3.58
572 973 1.594293 GACGGTGTCTGGTGGTGTG 60.594 63.158 0.00 0.00 0.00 3.82
573 974 2.028125 CTGACGGTGTCTGGTGGTGT 62.028 60.000 0.00 0.00 33.15 4.16
574 975 1.300931 CTGACGGTGTCTGGTGGTG 60.301 63.158 0.00 0.00 33.15 4.17
575 976 2.507854 CCTGACGGTGTCTGGTGGT 61.508 63.158 13.01 0.00 43.56 4.16
576 977 2.343758 CCTGACGGTGTCTGGTGG 59.656 66.667 13.01 1.14 43.56 4.61
580 981 0.036952 ATCTTGCCTGACGGTGTCTG 60.037 55.000 0.00 0.00 33.15 3.51
581 982 0.036952 CATCTTGCCTGACGGTGTCT 60.037 55.000 0.00 0.00 33.15 3.41
582 983 1.639298 GCATCTTGCCTGACGGTGTC 61.639 60.000 0.00 0.00 37.42 3.67
583 984 1.672356 GCATCTTGCCTGACGGTGT 60.672 57.895 0.00 0.00 37.42 4.16
584 985 3.181367 GCATCTTGCCTGACGGTG 58.819 61.111 0.00 0.00 37.42 4.94
605 1006 0.462047 CAGCCAGATTACCACGGGAC 60.462 60.000 0.00 0.00 0.00 4.46
606 1007 0.616395 TCAGCCAGATTACCACGGGA 60.616 55.000 0.00 0.00 0.00 5.14
607 1008 0.179073 CTCAGCCAGATTACCACGGG 60.179 60.000 0.00 0.00 0.00 5.28
608 1009 0.179073 CCTCAGCCAGATTACCACGG 60.179 60.000 0.00 0.00 0.00 4.94
609 1010 0.179073 CCCTCAGCCAGATTACCACG 60.179 60.000 0.00 0.00 0.00 4.94
610 1011 0.464554 GCCCTCAGCCAGATTACCAC 60.465 60.000 0.00 0.00 34.35 4.16
611 1012 1.915228 GCCCTCAGCCAGATTACCA 59.085 57.895 0.00 0.00 34.35 3.25
612 1013 4.887615 GCCCTCAGCCAGATTACC 57.112 61.111 0.00 0.00 34.35 2.85
649 1050 1.085091 CCAATCTCTCAGCACACAGC 58.915 55.000 0.00 0.00 46.19 4.40
650 1051 1.277273 TCCCAATCTCTCAGCACACAG 59.723 52.381 0.00 0.00 0.00 3.66
651 1052 1.351076 TCCCAATCTCTCAGCACACA 58.649 50.000 0.00 0.00 0.00 3.72
652 1053 2.093288 TGATCCCAATCTCTCAGCACAC 60.093 50.000 0.00 0.00 32.75 3.82
653 1054 2.190538 TGATCCCAATCTCTCAGCACA 58.809 47.619 0.00 0.00 32.75 4.57
654 1055 2.996249 TGATCCCAATCTCTCAGCAC 57.004 50.000 0.00 0.00 32.75 4.40
655 1056 2.036862 CGATGATCCCAATCTCTCAGCA 59.963 50.000 0.00 0.00 32.75 4.41
656 1057 2.298446 TCGATGATCCCAATCTCTCAGC 59.702 50.000 0.00 0.00 32.75 4.26
657 1058 4.463539 AGATCGATGATCCCAATCTCTCAG 59.536 45.833 0.54 0.00 39.66 3.35
658 1059 4.414677 AGATCGATGATCCCAATCTCTCA 58.585 43.478 0.54 0.00 39.66 3.27
659 1060 5.404466 AAGATCGATGATCCCAATCTCTC 57.596 43.478 0.54 0.00 39.66 3.20
660 1061 5.777223 TGTAAGATCGATGATCCCAATCTCT 59.223 40.000 0.54 0.00 39.66 3.10
661 1062 6.030548 TGTAAGATCGATGATCCCAATCTC 57.969 41.667 0.54 0.00 39.66 2.75
662 1063 5.777223 TCTGTAAGATCGATGATCCCAATCT 59.223 40.000 0.54 0.00 38.67 2.40
663 1064 6.030548 TCTGTAAGATCGATGATCCCAATC 57.969 41.667 0.54 0.00 38.67 2.67
679 1080 5.799213 AGGTTCAGAGGTTTCATCTGTAAG 58.201 41.667 10.39 0.00 43.79 2.34
680 1081 5.825593 AGGTTCAGAGGTTTCATCTGTAA 57.174 39.130 10.39 3.04 43.79 2.41
681 1082 7.496346 AATAGGTTCAGAGGTTTCATCTGTA 57.504 36.000 10.39 0.01 43.79 2.74
682 1083 6.380079 AATAGGTTCAGAGGTTTCATCTGT 57.620 37.500 10.39 0.00 43.79 3.41
683 1084 7.108847 AGAAATAGGTTCAGAGGTTTCATCTG 58.891 38.462 5.26 5.26 44.57 2.90
684 1085 7.264294 AGAAATAGGTTCAGAGGTTTCATCT 57.736 36.000 0.00 0.00 38.86 2.90
685 1086 6.540551 GGAGAAATAGGTTCAGAGGTTTCATC 59.459 42.308 0.00 0.00 38.86 2.92
686 1087 6.012508 TGGAGAAATAGGTTCAGAGGTTTCAT 60.013 38.462 0.00 0.00 38.86 2.57
687 1088 5.309543 TGGAGAAATAGGTTCAGAGGTTTCA 59.690 40.000 0.00 0.00 38.86 2.69
688 1089 5.805728 TGGAGAAATAGGTTCAGAGGTTTC 58.194 41.667 0.00 0.00 38.86 2.78
689 1090 5.843019 TGGAGAAATAGGTTCAGAGGTTT 57.157 39.130 0.00 0.00 38.86 3.27
690 1091 6.216456 AGAATGGAGAAATAGGTTCAGAGGTT 59.784 38.462 0.00 0.00 38.86 3.50
691 1092 5.728741 AGAATGGAGAAATAGGTTCAGAGGT 59.271 40.000 0.00 0.00 38.86 3.85
724 1127 2.031870 GACAGAAAGCAACCAGGGTTT 58.968 47.619 0.00 0.00 40.83 3.27
730 1133 3.206150 GTGAAGAGACAGAAAGCAACCA 58.794 45.455 0.00 0.00 0.00 3.67
736 1139 4.061596 GAGGTTGGTGAAGAGACAGAAAG 58.938 47.826 0.00 0.00 0.00 2.62
759 1162 1.749033 GTATTGGAGAGGGGAGCCG 59.251 63.158 0.00 0.00 0.00 5.52
762 1165 1.132500 GGTGGTATTGGAGAGGGGAG 58.868 60.000 0.00 0.00 0.00 4.30
764 1167 1.132500 GAGGTGGTATTGGAGAGGGG 58.868 60.000 0.00 0.00 0.00 4.79
861 1269 1.592223 GGAGACCGAACCAGACTGG 59.408 63.158 20.45 20.45 45.02 4.00
991 1411 1.340405 CCTGTTGTCAATGGAGGGGAG 60.340 57.143 2.46 0.00 0.00 4.30
992 1412 0.698238 CCTGTTGTCAATGGAGGGGA 59.302 55.000 2.46 0.00 0.00 4.81
993 1413 0.323725 CCCTGTTGTCAATGGAGGGG 60.324 60.000 15.17 7.67 0.00 4.79
1002 1422 1.227823 CAAGCGACCCCTGTTGTCA 60.228 57.895 0.00 0.00 32.91 3.58
1010 1430 0.168128 CGATTTTGTCAAGCGACCCC 59.832 55.000 0.00 0.00 41.85 4.95
1035 1455 4.374702 CTTCCTGTGCGTGCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
1203 1633 2.419851 CCCTCTTCTGCTTGATCAGGTC 60.420 54.545 6.70 0.00 34.91 3.85
1275 1705 1.619669 GGAACCCCTCCCTGGTCAT 60.620 63.158 0.00 0.00 38.44 3.06
1277 1707 2.204090 TGGAACCCCTCCCTGGTC 60.204 66.667 0.00 0.00 44.69 4.02
1427 1862 6.348050 GCAAATTCATCTTCTTTCTCGTCAGT 60.348 38.462 0.00 0.00 0.00 3.41
1457 1904 1.786579 GCCTGCAACAACGAAATTCAC 59.213 47.619 0.00 0.00 0.00 3.18
1468 1915 3.043713 CTTCGAGCGCCTGCAACA 61.044 61.111 2.29 0.00 46.23 3.33
1469 1916 4.451652 GCTTCGAGCGCCTGCAAC 62.452 66.667 2.29 0.00 46.23 4.17
1489 1936 1.961277 CGTTGGCCAGCTTCGAGTT 60.961 57.895 18.19 0.00 0.00 3.01
1490 1937 2.172483 ATCGTTGGCCAGCTTCGAGT 62.172 55.000 18.19 8.70 34.20 4.18
1491 1938 1.021390 AATCGTTGGCCAGCTTCGAG 61.021 55.000 18.19 1.38 34.20 4.04
1614 2062 6.015940 ACCACTGAGCATTTTTCTTTTCCTAG 60.016 38.462 0.00 0.00 0.00 3.02
1619 2067 5.976458 TGAACCACTGAGCATTTTTCTTTT 58.024 33.333 0.00 0.00 0.00 2.27
1620 2068 5.596836 TGAACCACTGAGCATTTTTCTTT 57.403 34.783 0.00 0.00 0.00 2.52
1621 2069 5.796424 ATGAACCACTGAGCATTTTTCTT 57.204 34.783 0.00 0.00 0.00 2.52
1622 2070 7.472334 AATATGAACCACTGAGCATTTTTCT 57.528 32.000 0.00 0.00 0.00 2.52
1623 2071 8.538409 AAAATATGAACCACTGAGCATTTTTC 57.462 30.769 0.00 0.00 0.00 2.29
1624 2072 8.907222 AAAAATATGAACCACTGAGCATTTTT 57.093 26.923 0.00 0.00 32.42 1.94
1682 2130 9.135843 CGACGAATCTTTATAATATGCCTGTTA 57.864 33.333 0.00 0.00 0.00 2.41
1683 2131 7.117812 CCGACGAATCTTTATAATATGCCTGTT 59.882 37.037 0.00 0.00 0.00 3.16
1684 2132 6.590292 CCGACGAATCTTTATAATATGCCTGT 59.410 38.462 0.00 0.00 0.00 4.00
1685 2133 6.811665 TCCGACGAATCTTTATAATATGCCTG 59.188 38.462 0.00 0.00 0.00 4.85
1686 2134 6.931838 TCCGACGAATCTTTATAATATGCCT 58.068 36.000 0.00 0.00 0.00 4.75
1687 2135 7.277981 ACATCCGACGAATCTTTATAATATGCC 59.722 37.037 0.00 0.00 0.00 4.40
1688 2136 8.186178 ACATCCGACGAATCTTTATAATATGC 57.814 34.615 0.00 0.00 0.00 3.14
1692 2140 9.537192 TTTGTACATCCGACGAATCTTTATAAT 57.463 29.630 0.00 0.00 0.00 1.28
1693 2141 8.929827 TTTGTACATCCGACGAATCTTTATAA 57.070 30.769 0.00 0.00 0.00 0.98
1694 2142 7.168637 GCTTTGTACATCCGACGAATCTTTATA 59.831 37.037 0.00 0.00 0.00 0.98
1695 2143 6.018994 GCTTTGTACATCCGACGAATCTTTAT 60.019 38.462 0.00 0.00 0.00 1.40
1696 2144 5.290158 GCTTTGTACATCCGACGAATCTTTA 59.710 40.000 0.00 0.00 0.00 1.85
1697 2145 4.092968 GCTTTGTACATCCGACGAATCTTT 59.907 41.667 0.00 0.00 0.00 2.52
1698 2146 3.617263 GCTTTGTACATCCGACGAATCTT 59.383 43.478 0.00 0.00 0.00 2.40
1699 2147 3.187700 GCTTTGTACATCCGACGAATCT 58.812 45.455 0.00 0.00 0.00 2.40
1700 2148 2.927477 TGCTTTGTACATCCGACGAATC 59.073 45.455 0.00 0.00 0.00 2.52
1701 2149 2.671396 GTGCTTTGTACATCCGACGAAT 59.329 45.455 0.00 0.00 0.00 3.34
1702 2150 2.063266 GTGCTTTGTACATCCGACGAA 58.937 47.619 0.00 0.00 0.00 3.85
1703 2151 1.670674 GGTGCTTTGTACATCCGACGA 60.671 52.381 0.00 0.00 0.00 4.20
1704 2152 0.719465 GGTGCTTTGTACATCCGACG 59.281 55.000 0.00 0.00 0.00 5.12
1705 2153 1.084289 GGGTGCTTTGTACATCCGAC 58.916 55.000 0.00 0.00 0.00 4.79
1706 2154 0.981183 AGGGTGCTTTGTACATCCGA 59.019 50.000 0.00 0.00 43.49 4.55
1707 2155 1.086696 CAGGGTGCTTTGTACATCCG 58.913 55.000 0.00 0.00 43.49 4.18
1708 2156 2.084546 GTCAGGGTGCTTTGTACATCC 58.915 52.381 0.00 0.00 38.70 3.51
1709 2157 2.778299 TGTCAGGGTGCTTTGTACATC 58.222 47.619 0.00 0.00 0.00 3.06
1710 2158 2.949177 TGTCAGGGTGCTTTGTACAT 57.051 45.000 0.00 0.00 0.00 2.29
1711 2159 2.949177 ATGTCAGGGTGCTTTGTACA 57.051 45.000 0.00 0.00 0.00 2.90
1712 2160 6.995511 TTATTATGTCAGGGTGCTTTGTAC 57.004 37.500 0.00 0.00 0.00 2.90
1713 2161 8.410673 TTTTTATTATGTCAGGGTGCTTTGTA 57.589 30.769 0.00 0.00 0.00 2.41
1714 2162 6.909550 TTTTATTATGTCAGGGTGCTTTGT 57.090 33.333 0.00 0.00 0.00 2.83
1715 2163 8.776376 AATTTTTATTATGTCAGGGTGCTTTG 57.224 30.769 0.00 0.00 0.00 2.77
1716 2164 8.815912 AGAATTTTTATTATGTCAGGGTGCTTT 58.184 29.630 0.00 0.00 0.00 3.51
1717 2165 8.366359 AGAATTTTTATTATGTCAGGGTGCTT 57.634 30.769 0.00 0.00 0.00 3.91
1718 2166 7.961326 AGAATTTTTATTATGTCAGGGTGCT 57.039 32.000 0.00 0.00 0.00 4.40
1719 2167 8.250332 TCAAGAATTTTTATTATGTCAGGGTGC 58.750 33.333 0.00 0.00 0.00 5.01
1739 2187 9.677567 GTGTATGCACTTTTTAGAATTCAAGAA 57.322 29.630 8.44 1.62 42.13 2.52
1740 2188 8.845227 TGTGTATGCACTTTTTAGAATTCAAGA 58.155 29.630 15.25 0.00 45.44 3.02
1741 2189 9.462174 TTGTGTATGCACTTTTTAGAATTCAAG 57.538 29.630 15.25 5.04 45.44 3.02
1742 2190 9.243637 GTTGTGTATGCACTTTTTAGAATTCAA 57.756 29.630 15.25 0.00 45.44 2.69
1743 2191 8.629158 AGTTGTGTATGCACTTTTTAGAATTCA 58.371 29.630 15.25 0.00 45.44 2.57
1750 2198 9.834628 GCTAAATAGTTGTGTATGCACTTTTTA 57.165 29.630 15.25 9.99 45.44 1.52
1751 2199 8.356657 TGCTAAATAGTTGTGTATGCACTTTTT 58.643 29.630 15.25 9.48 45.44 1.94
1752 2200 7.881142 TGCTAAATAGTTGTGTATGCACTTTT 58.119 30.769 15.25 9.19 45.44 2.27
1753 2201 7.447374 TGCTAAATAGTTGTGTATGCACTTT 57.553 32.000 15.25 9.00 45.44 2.66
1754 2202 7.447374 TTGCTAAATAGTTGTGTATGCACTT 57.553 32.000 15.25 2.61 45.44 3.16
1755 2203 7.447374 TTTGCTAAATAGTTGTGTATGCACT 57.553 32.000 15.25 0.00 45.44 4.40
1756 2204 8.687824 ATTTTGCTAAATAGTTGTGTATGCAC 57.312 30.769 7.03 7.03 37.85 4.57
1757 2205 9.138062 CAATTTTGCTAAATAGTTGTGTATGCA 57.862 29.630 6.55 0.00 32.85 3.96
1758 2206 9.352784 TCAATTTTGCTAAATAGTTGTGTATGC 57.647 29.630 6.55 0.00 32.85 3.14
1760 2208 9.573133 GCTCAATTTTGCTAAATAGTTGTGTAT 57.427 29.630 6.55 0.00 32.85 2.29
1761 2209 7.748683 CGCTCAATTTTGCTAAATAGTTGTGTA 59.251 33.333 6.55 0.00 32.85 2.90
1762 2210 6.582295 CGCTCAATTTTGCTAAATAGTTGTGT 59.418 34.615 6.55 0.00 32.85 3.72
1763 2211 6.033831 CCGCTCAATTTTGCTAAATAGTTGTG 59.966 38.462 6.55 5.21 32.85 3.33
1764 2212 6.092748 CCGCTCAATTTTGCTAAATAGTTGT 58.907 36.000 6.55 0.00 32.85 3.32
1765 2213 5.004726 GCCGCTCAATTTTGCTAAATAGTTG 59.995 40.000 6.55 3.29 32.85 3.16
1766 2214 5.102313 GCCGCTCAATTTTGCTAAATAGTT 58.898 37.500 6.55 0.00 32.85 2.24
1767 2215 4.440112 GGCCGCTCAATTTTGCTAAATAGT 60.440 41.667 6.55 0.00 32.85 2.12
1768 2216 4.044426 GGCCGCTCAATTTTGCTAAATAG 58.956 43.478 6.55 3.24 32.85 1.73
1769 2217 3.488384 CGGCCGCTCAATTTTGCTAAATA 60.488 43.478 14.67 0.00 32.85 1.40
1770 2218 2.735126 CGGCCGCTCAATTTTGCTAAAT 60.735 45.455 14.67 0.00 35.49 1.40
1771 2219 1.402194 CGGCCGCTCAATTTTGCTAAA 60.402 47.619 14.67 0.00 0.00 1.85
1772 2220 0.170116 CGGCCGCTCAATTTTGCTAA 59.830 50.000 14.67 0.00 0.00 3.09
1773 2221 1.653094 CCGGCCGCTCAATTTTGCTA 61.653 55.000 22.85 0.00 0.00 3.49
1774 2222 2.568090 CGGCCGCTCAATTTTGCT 59.432 55.556 14.67 0.00 0.00 3.91
1775 2223 2.506881 CCGGCCGCTCAATTTTGC 60.507 61.111 22.85 0.00 0.00 3.68
1776 2224 2.506881 GCCGGCCGCTCAATTTTG 60.507 61.111 22.85 3.31 0.00 2.44
1793 2241 3.775654 GTCCGCCCCTGGTGAGAG 61.776 72.222 0.00 0.00 34.74 3.20
1804 2252 0.966179 ATTTTTGTTCTGGGTCCGCC 59.034 50.000 0.00 0.00 0.00 6.13
1805 2253 1.339929 ACATTTTTGTTCTGGGTCCGC 59.660 47.619 0.00 0.00 0.00 5.54
1806 2254 2.030274 GGACATTTTTGTTCTGGGTCCG 60.030 50.000 0.00 0.00 34.64 4.79
1807 2255 2.299013 GGGACATTTTTGTTCTGGGTCC 59.701 50.000 0.00 0.00 41.93 4.46
1808 2256 2.030274 CGGGACATTTTTGTTCTGGGTC 60.030 50.000 0.00 0.00 0.00 4.46
1809 2257 1.960689 CGGGACATTTTTGTTCTGGGT 59.039 47.619 0.00 0.00 0.00 4.51
1810 2258 1.272212 CCGGGACATTTTTGTTCTGGG 59.728 52.381 4.57 0.00 39.62 4.45
1811 2259 1.960689 ACCGGGACATTTTTGTTCTGG 59.039 47.619 6.32 10.19 46.89 3.86
1812 2260 2.360801 ACACCGGGACATTTTTGTTCTG 59.639 45.455 6.32 0.00 0.00 3.02
1813 2261 2.621526 GACACCGGGACATTTTTGTTCT 59.378 45.455 6.32 0.00 0.00 3.01
1814 2262 2.287970 GGACACCGGGACATTTTTGTTC 60.288 50.000 6.32 0.00 0.00 3.18
1815 2263 1.684450 GGACACCGGGACATTTTTGTT 59.316 47.619 6.32 0.00 0.00 2.83
1816 2264 1.324383 GGACACCGGGACATTTTTGT 58.676 50.000 6.32 0.00 0.00 2.83
1817 2265 0.601057 GGGACACCGGGACATTTTTG 59.399 55.000 6.32 0.00 0.00 2.44
1818 2266 0.186386 TGGGACACCGGGACATTTTT 59.814 50.000 6.32 0.00 40.75 1.94
1819 2267 1.847686 TGGGACACCGGGACATTTT 59.152 52.632 6.32 0.00 40.75 1.82
1820 2268 3.582662 TGGGACACCGGGACATTT 58.417 55.556 6.32 0.00 40.75 2.32
1831 2279 7.959562 CCATAAGTATGCAATAGACATGGGACA 60.960 40.741 0.00 0.00 35.85 4.02
1832 2280 6.372659 CCATAAGTATGCAATAGACATGGGAC 59.627 42.308 0.00 0.00 32.07 4.46
1833 2281 6.272090 TCCATAAGTATGCAATAGACATGGGA 59.728 38.462 13.43 2.48 34.48 4.37
1834 2282 6.475504 TCCATAAGTATGCAATAGACATGGG 58.524 40.000 13.43 0.48 34.48 4.00
1835 2283 9.842775 ATATCCATAAGTATGCAATAGACATGG 57.157 33.333 0.00 0.01 34.78 3.66
1912 2360 9.691362 CCTACATGCTAAAATGTTGTAGTTTTT 57.309 29.630 0.00 0.00 41.09 1.94
1984 2432 3.826157 CCAAACAGCTCCAAAGTATTCCA 59.174 43.478 0.00 0.00 0.00 3.53
2096 2546 2.446435 GACTTTGTGCATATGGGTGGT 58.554 47.619 4.56 0.00 0.00 4.16
2137 2587 1.447838 GGACGAGCTTTCGGCATGA 60.448 57.895 3.41 0.00 44.16 3.07
2144 2594 1.375268 AGCTGCAGGACGAGCTTTC 60.375 57.895 17.12 0.00 43.15 2.62
2213 2714 4.903054 TCCTACTTCTCTTCGTGTGTCTA 58.097 43.478 0.00 0.00 0.00 2.59
2288 2796 0.394762 CATGAAGCTGGCAGGCCTTA 60.395 55.000 17.64 0.00 36.94 2.69
2676 3194 8.879759 ACACGGTTTTCTATACATATTGAACTG 58.120 33.333 0.00 0.00 29.58 3.16
2686 3204 9.926158 TTTCACTATTACACGGTTTTCTATACA 57.074 29.630 0.00 0.00 0.00 2.29
2691 3209 9.498176 AGTATTTTCACTATTACACGGTTTTCT 57.502 29.630 0.00 0.00 0.00 2.52
2695 3213 9.709495 TGTAAGTATTTTCACTATTACACGGTT 57.291 29.630 0.00 0.00 0.00 4.44
2696 3214 9.143631 GTGTAAGTATTTTCACTATTACACGGT 57.856 33.333 9.47 0.00 35.05 4.83
2697 3215 9.142515 TGTGTAAGTATTTTCACTATTACACGG 57.857 33.333 16.64 0.00 41.46 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.