Multiple sequence alignment - TraesCS7B01G341800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G341800 chr7B 100.000 2743 0 0 1 2743 596783551 596780809 0.000000e+00 5066.0
1 TraesCS7B01G341800 chr7B 82.667 900 102 22 898 1767 596680839 596679964 0.000000e+00 749.0
2 TraesCS7B01G341800 chr7B 89.535 258 25 2 1 256 596687809 596687552 2.630000e-85 326.0
3 TraesCS7B01G341800 chr7B 78.806 335 59 9 1311 1638 595993582 595993253 5.950000e-52 215.0
4 TraesCS7B01G341800 chr7D 83.243 1474 186 32 364 1787 551929179 551927717 0.000000e+00 1297.0
5 TraesCS7B01G341800 chr7D 85.333 750 96 8 1029 1767 551809054 551808308 0.000000e+00 763.0
6 TraesCS7B01G341800 chr7D 84.501 671 77 17 2097 2743 551927201 551926534 2.980000e-179 638.0
7 TraesCS7B01G341800 chr7D 78.861 667 115 17 1012 1663 551000312 550999657 7.020000e-116 427.0
8 TraesCS7B01G341800 chr7D 85.556 360 48 4 1 357 551816502 551816144 9.280000e-100 374.0
9 TraesCS7B01G341800 chr7D 85.278 360 49 4 1 357 551835138 551834780 4.320000e-98 368.0
10 TraesCS7B01G341800 chr7D 81.297 401 51 11 1277 1666 551114370 551113983 1.230000e-78 303.0
11 TraesCS7B01G341800 chr7D 85.393 89 11 1 461 547 551115134 551115046 1.050000e-14 91.6
12 TraesCS7B01G341800 chr7A 81.812 1479 192 40 364 1787 637337559 637336103 0.000000e+00 1170.0
13 TraesCS7B01G341800 chr7A 80.053 1138 148 36 592 1663 637037116 637035992 0.000000e+00 771.0
14 TraesCS7B01G341800 chr7A 84.825 659 70 17 2103 2743 637335505 637334859 1.070000e-178 636.0
15 TraesCS7B01G341800 chr7A 78.938 565 97 14 1097 1648 636919463 636918908 5.580000e-97 364.0
16 TraesCS7B01G341800 chr7A 87.701 187 22 1 2 187 637337753 637337567 1.650000e-52 217.0
17 TraesCS7B01G341800 chr7A 81.463 205 29 5 147 344 722279142 722278940 2.830000e-35 159.0
18 TraesCS7B01G341800 chr6D 79.185 466 63 14 99 535 432676566 432676106 2.670000e-75 292.0
19 TraesCS7B01G341800 chr6A 77.991 468 67 19 99 535 578706263 578705801 7.530000e-66 261.0
20 TraesCS7B01G341800 chr4B 95.349 43 2 0 727 769 206493741 206493783 4.900000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G341800 chr7B 596780809 596783551 2742 True 5066.000000 5066 100.000000 1 2743 1 chr7B.!!$R4 2742
1 TraesCS7B01G341800 chr7B 596679964 596680839 875 True 749.000000 749 82.667000 898 1767 1 chr7B.!!$R2 869
2 TraesCS7B01G341800 chr7D 551926534 551929179 2645 True 967.500000 1297 83.872000 364 2743 2 chr7D.!!$R6 2379
3 TraesCS7B01G341800 chr7D 551808308 551809054 746 True 763.000000 763 85.333000 1029 1767 1 chr7D.!!$R2 738
4 TraesCS7B01G341800 chr7D 550999657 551000312 655 True 427.000000 427 78.861000 1012 1663 1 chr7D.!!$R1 651
5 TraesCS7B01G341800 chr7A 637035992 637037116 1124 True 771.000000 771 80.053000 592 1663 1 chr7A.!!$R2 1071
6 TraesCS7B01G341800 chr7A 637334859 637337753 2894 True 674.333333 1170 84.779333 2 2743 3 chr7A.!!$R4 2741
7 TraesCS7B01G341800 chr7A 636918908 636919463 555 True 364.000000 364 78.938000 1097 1648 1 chr7A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 472 0.030092 TAGGGCTAGCAAGGACCCAT 60.030 55.0 18.24 0.00 45.45 4.00 F
658 662 0.179127 TCCTTTCTCTCGCAGCGATG 60.179 55.0 19.91 14.39 34.61 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1370 0.031585 GCCGCCGTGTATATCACAGA 59.968 55.0 6.25 0.0 46.44 3.41 R
1856 1980 0.251787 ACTCCAATCCAAACAGCCCC 60.252 55.0 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.703411 TTTTGTGGCTCTCCTTTGGG 58.297 50.000 0.00 0.00 0.00 4.12
32 33 3.620488 TCCTTTGGGCTACATGATGAAC 58.380 45.455 0.00 0.00 0.00 3.18
42 43 1.660607 ACATGATGAACGCGATGTGAC 59.339 47.619 15.93 0.00 0.00 3.67
46 47 2.741517 TGATGAACGCGATGTGACATTT 59.258 40.909 15.93 0.00 31.57 2.32
58 59 5.525012 CGATGTGACATTTACTGATGGTCAT 59.475 40.000 0.00 0.00 0.00 3.06
71 72 4.795469 TGATGGTCATGATTGGCAAGTAT 58.205 39.130 5.96 0.00 0.00 2.12
72 73 5.939447 TGATGGTCATGATTGGCAAGTATA 58.061 37.500 5.96 0.00 0.00 1.47
76 77 4.516698 GGTCATGATTGGCAAGTATAGGTG 59.483 45.833 5.96 0.00 0.00 4.00
77 78 5.368145 GTCATGATTGGCAAGTATAGGTGA 58.632 41.667 5.96 0.60 0.00 4.02
78 79 6.000219 GTCATGATTGGCAAGTATAGGTGAT 59.000 40.000 5.96 0.00 0.00 3.06
80 81 5.894298 TGATTGGCAAGTATAGGTGATCT 57.106 39.130 5.96 0.00 0.00 2.75
81 82 5.614308 TGATTGGCAAGTATAGGTGATCTG 58.386 41.667 5.96 0.00 0.00 2.90
84 85 4.769688 TGGCAAGTATAGGTGATCTGTTG 58.230 43.478 0.00 0.00 0.00 3.33
88 90 4.576216 AGTATAGGTGATCTGTTGAGCG 57.424 45.455 0.00 0.00 0.00 5.03
138 140 7.429374 TCATCAGTTCTAGTGAATGAAGGAT 57.571 36.000 3.85 0.00 34.40 3.24
157 159 4.999950 AGGATGTCTTTGAACATGACTCAC 59.000 41.667 0.00 0.00 39.93 3.51
159 161 5.471456 GGATGTCTTTGAACATGACTCACTT 59.529 40.000 0.00 0.00 39.93 3.16
162 164 5.879777 TGTCTTTGAACATGACTCACTTCAA 59.120 36.000 0.00 0.89 32.16 2.69
174 176 8.900781 CATGACTCACTTCAAGGAATCAAATAT 58.099 33.333 0.00 0.00 0.00 1.28
176 178 8.102676 TGACTCACTTCAAGGAATCAAATATCA 58.897 33.333 0.00 0.00 0.00 2.15
229 231 9.452065 GAAAGAAAAGAGAAACTAATGTTCACC 57.548 33.333 0.00 0.00 34.96 4.02
230 232 7.511959 AGAAAAGAGAAACTAATGTTCACCC 57.488 36.000 0.00 0.00 34.96 4.61
231 233 7.290813 AGAAAAGAGAAACTAATGTTCACCCT 58.709 34.615 0.00 0.00 34.96 4.34
232 234 7.780271 AGAAAAGAGAAACTAATGTTCACCCTT 59.220 33.333 0.00 0.00 34.96 3.95
233 235 7.898014 AAAGAGAAACTAATGTTCACCCTTT 57.102 32.000 0.00 0.00 34.96 3.11
234 236 7.511959 AAGAGAAACTAATGTTCACCCTTTC 57.488 36.000 0.00 0.00 34.96 2.62
235 237 6.004574 AGAGAAACTAATGTTCACCCTTTCC 58.995 40.000 0.00 0.00 34.96 3.13
236 238 5.701224 AGAAACTAATGTTCACCCTTTCCA 58.299 37.500 0.00 0.00 34.96 3.53
237 239 6.314917 AGAAACTAATGTTCACCCTTTCCAT 58.685 36.000 0.00 0.00 34.96 3.41
238 240 6.782494 AGAAACTAATGTTCACCCTTTCCATT 59.218 34.615 0.00 0.00 34.96 3.16
239 241 5.982890 ACTAATGTTCACCCTTTCCATTG 57.017 39.130 0.00 0.00 0.00 2.82
240 242 3.683365 AATGTTCACCCTTTCCATTGC 57.317 42.857 0.00 0.00 0.00 3.56
241 243 0.958091 TGTTCACCCTTTCCATTGCG 59.042 50.000 0.00 0.00 0.00 4.85
242 244 1.243902 GTTCACCCTTTCCATTGCGA 58.756 50.000 0.00 0.00 0.00 5.10
243 245 1.200020 GTTCACCCTTTCCATTGCGAG 59.800 52.381 0.00 0.00 0.00 5.03
244 246 0.400213 TCACCCTTTCCATTGCGAGT 59.600 50.000 0.00 0.00 0.00 4.18
245 247 1.626321 TCACCCTTTCCATTGCGAGTA 59.374 47.619 0.00 0.00 0.00 2.59
246 248 2.039216 TCACCCTTTCCATTGCGAGTAA 59.961 45.455 0.00 0.00 0.00 2.24
247 249 2.817258 CACCCTTTCCATTGCGAGTAAA 59.183 45.455 0.00 0.00 0.00 2.01
248 250 3.081804 ACCCTTTCCATTGCGAGTAAAG 58.918 45.455 0.00 0.00 0.00 1.85
249 251 2.159379 CCCTTTCCATTGCGAGTAAAGC 60.159 50.000 0.00 0.00 0.00 3.51
250 252 2.476185 CCTTTCCATTGCGAGTAAAGCG 60.476 50.000 0.00 0.00 37.44 4.68
251 253 1.803334 TTCCATTGCGAGTAAAGCGT 58.197 45.000 0.00 0.00 37.44 5.07
252 254 1.075542 TCCATTGCGAGTAAAGCGTG 58.924 50.000 0.00 0.00 37.44 5.34
253 255 0.096976 CCATTGCGAGTAAAGCGTGG 59.903 55.000 0.00 0.00 36.92 4.94
254 256 0.521242 CATTGCGAGTAAAGCGTGGC 60.521 55.000 0.00 0.00 37.44 5.01
255 257 0.673644 ATTGCGAGTAAAGCGTGGCT 60.674 50.000 0.00 0.00 42.56 4.75
256 258 0.038067 TTGCGAGTAAAGCGTGGCTA 60.038 50.000 0.00 0.00 38.25 3.93
257 259 0.038067 TGCGAGTAAAGCGTGGCTAA 60.038 50.000 0.00 0.00 38.25 3.09
258 260 1.073177 GCGAGTAAAGCGTGGCTAAA 58.927 50.000 0.00 0.00 38.25 1.85
259 261 1.060698 GCGAGTAAAGCGTGGCTAAAG 59.939 52.381 0.00 0.00 38.25 1.85
260 262 2.334838 CGAGTAAAGCGTGGCTAAAGT 58.665 47.619 0.00 0.00 38.25 2.66
261 263 3.504863 CGAGTAAAGCGTGGCTAAAGTA 58.495 45.455 0.00 0.00 38.25 2.24
262 264 4.110482 CGAGTAAAGCGTGGCTAAAGTAT 58.890 43.478 0.00 0.00 38.25 2.12
263 265 4.206609 CGAGTAAAGCGTGGCTAAAGTATC 59.793 45.833 0.00 0.00 38.25 2.24
264 266 4.439968 AGTAAAGCGTGGCTAAAGTATCC 58.560 43.478 0.00 0.00 38.25 2.59
265 267 3.629142 AAAGCGTGGCTAAAGTATCCT 57.371 42.857 0.00 0.00 38.25 3.24
266 268 2.892784 AGCGTGGCTAAAGTATCCTC 57.107 50.000 0.00 0.00 36.99 3.71
267 269 1.413077 AGCGTGGCTAAAGTATCCTCC 59.587 52.381 0.00 0.00 36.99 4.30
268 270 1.413077 GCGTGGCTAAAGTATCCTCCT 59.587 52.381 0.00 0.00 0.00 3.69
269 271 2.546162 GCGTGGCTAAAGTATCCTCCTC 60.546 54.545 0.00 0.00 0.00 3.71
270 272 2.287668 CGTGGCTAAAGTATCCTCCTCG 60.288 54.545 0.00 0.00 0.00 4.63
271 273 1.687123 TGGCTAAAGTATCCTCCTCGC 59.313 52.381 0.00 0.00 0.00 5.03
272 274 1.336056 GGCTAAAGTATCCTCCTCGCG 60.336 57.143 0.00 0.00 0.00 5.87
273 275 1.337387 GCTAAAGTATCCTCCTCGCGT 59.663 52.381 5.77 0.00 0.00 6.01
274 276 2.859032 GCTAAAGTATCCTCCTCGCGTG 60.859 54.545 5.77 2.75 0.00 5.34
275 277 0.460311 AAAGTATCCTCCTCGCGTGG 59.540 55.000 20.92 20.92 0.00 4.94
276 278 2.017559 AAGTATCCTCCTCGCGTGGC 62.018 60.000 22.04 7.21 0.00 5.01
277 279 2.123854 TATCCTCCTCGCGTGGCT 60.124 61.111 22.04 9.07 0.00 4.75
278 280 2.490148 TATCCTCCTCGCGTGGCTG 61.490 63.158 22.04 15.89 0.00 4.85
279 281 2.904178 TATCCTCCTCGCGTGGCTGA 62.904 60.000 22.04 19.09 0.00 4.26
280 282 4.504916 CCTCCTCGCGTGGCTGAG 62.505 72.222 22.04 13.97 0.00 3.35
281 283 3.753434 CTCCTCGCGTGGCTGAGT 61.753 66.667 22.04 0.00 31.26 3.41
282 284 3.288308 CTCCTCGCGTGGCTGAGTT 62.288 63.158 22.04 0.00 31.26 3.01
283 285 2.811317 CCTCGCGTGGCTGAGTTC 60.811 66.667 15.08 0.00 31.26 3.01
284 286 2.259818 CTCGCGTGGCTGAGTTCT 59.740 61.111 5.77 0.00 0.00 3.01
285 287 1.803519 CTCGCGTGGCTGAGTTCTC 60.804 63.158 5.77 0.00 0.00 2.87
286 288 3.175240 CGCGTGGCTGAGTTCTCG 61.175 66.667 0.00 0.00 0.00 4.04
287 289 3.482783 GCGTGGCTGAGTTCTCGC 61.483 66.667 8.10 8.10 37.17 5.03
288 290 2.811317 CGTGGCTGAGTTCTCGCC 60.811 66.667 20.14 20.14 44.02 5.54
289 291 2.659610 GTGGCTGAGTTCTCGCCT 59.340 61.111 23.99 0.00 44.09 5.52
290 292 1.004440 GTGGCTGAGTTCTCGCCTT 60.004 57.895 23.99 0.00 44.09 4.35
291 293 1.004560 TGGCTGAGTTCTCGCCTTG 60.005 57.895 23.99 5.38 44.09 3.61
292 294 2.394563 GGCTGAGTTCTCGCCTTGC 61.395 63.158 19.87 9.25 40.62 4.01
293 295 2.394563 GCTGAGTTCTCGCCTTGCC 61.395 63.158 5.74 0.00 0.00 4.52
294 296 2.048222 TGAGTTCTCGCCTTGCCG 60.048 61.111 0.00 0.00 0.00 5.69
295 297 2.261671 GAGTTCTCGCCTTGCCGA 59.738 61.111 0.00 0.00 35.68 5.54
296 298 2.048127 AGTTCTCGCCTTGCCGAC 60.048 61.111 0.00 0.00 33.12 4.79
297 299 2.357034 GTTCTCGCCTTGCCGACA 60.357 61.111 0.00 0.00 33.12 4.35
298 300 2.357034 TTCTCGCCTTGCCGACAC 60.357 61.111 0.00 0.00 33.12 3.67
299 301 2.867855 TTCTCGCCTTGCCGACACT 61.868 57.895 0.00 0.00 33.12 3.55
300 302 3.114616 CTCGCCTTGCCGACACTG 61.115 66.667 0.00 0.00 33.12 3.66
301 303 4.680237 TCGCCTTGCCGACACTGG 62.680 66.667 0.00 0.00 31.36 4.00
309 311 3.499737 CCGACACTGGCATTCCGC 61.500 66.667 0.00 0.00 41.28 5.54
310 312 2.434884 CGACACTGGCATTCCGCT 60.435 61.111 0.00 0.00 41.91 5.52
311 313 2.743752 CGACACTGGCATTCCGCTG 61.744 63.158 0.00 0.00 41.91 5.18
312 314 1.672356 GACACTGGCATTCCGCTGT 60.672 57.895 0.00 0.00 41.91 4.40
313 315 1.228245 ACACTGGCATTCCGCTGTT 60.228 52.632 0.00 0.00 41.91 3.16
314 316 0.036164 ACACTGGCATTCCGCTGTTA 59.964 50.000 0.00 0.00 41.91 2.41
315 317 1.340017 ACACTGGCATTCCGCTGTTAT 60.340 47.619 0.00 0.00 41.91 1.89
316 318 2.093181 ACACTGGCATTCCGCTGTTATA 60.093 45.455 0.00 0.00 41.91 0.98
317 319 2.545526 CACTGGCATTCCGCTGTTATAG 59.454 50.000 0.00 0.00 41.91 1.31
326 328 4.608933 CTGTTATAGCTCGCGCGA 57.391 55.556 32.60 32.60 42.32 5.87
327 329 2.868020 CTGTTATAGCTCGCGCGAA 58.132 52.632 33.99 20.11 42.32 4.70
328 330 1.197055 CTGTTATAGCTCGCGCGAAA 58.803 50.000 33.99 21.49 42.32 3.46
329 331 1.586578 CTGTTATAGCTCGCGCGAAAA 59.413 47.619 33.99 21.29 42.32 2.29
330 332 1.322338 TGTTATAGCTCGCGCGAAAAC 59.678 47.619 33.99 27.23 42.32 2.43
331 333 0.568888 TTATAGCTCGCGCGAAAACG 59.431 50.000 33.99 22.47 42.32 3.60
332 334 0.248175 TATAGCTCGCGCGAAAACGA 60.248 50.000 33.99 21.22 42.32 3.85
333 335 1.074319 ATAGCTCGCGCGAAAACGAA 61.074 50.000 33.99 18.25 42.32 3.85
334 336 1.670971 TAGCTCGCGCGAAAACGAAG 61.671 55.000 33.99 20.56 42.32 3.79
335 337 2.995450 GCTCGCGCGAAAACGAAGA 61.995 57.895 33.99 8.02 37.94 2.87
336 338 1.485514 CTCGCGCGAAAACGAAGAA 59.514 52.632 33.99 7.18 37.94 2.52
337 339 0.093026 CTCGCGCGAAAACGAAGAAT 59.907 50.000 33.99 0.00 37.94 2.40
338 340 0.509499 TCGCGCGAAAACGAAGAATT 59.491 45.000 32.97 0.00 34.93 2.17
339 341 0.623403 CGCGCGAAAACGAAGAATTG 59.377 50.000 28.94 0.00 34.06 2.32
340 342 1.720233 CGCGCGAAAACGAAGAATTGA 60.720 47.619 28.94 0.00 34.06 2.57
341 343 1.637563 GCGCGAAAACGAAGAATTGAC 59.362 47.619 12.10 0.00 34.06 3.18
342 344 2.230864 CGCGAAAACGAAGAATTGACC 58.769 47.619 0.00 0.00 34.06 4.02
343 345 2.349060 CGCGAAAACGAAGAATTGACCA 60.349 45.455 0.00 0.00 34.06 4.02
344 346 3.226347 GCGAAAACGAAGAATTGACCAG 58.774 45.455 0.00 0.00 0.00 4.00
345 347 3.226347 CGAAAACGAAGAATTGACCAGC 58.774 45.455 0.00 0.00 0.00 4.85
346 348 2.969443 AAACGAAGAATTGACCAGCG 57.031 45.000 0.00 0.00 0.00 5.18
347 349 1.156736 AACGAAGAATTGACCAGCGG 58.843 50.000 0.00 0.00 0.00 5.52
348 350 0.034896 ACGAAGAATTGACCAGCGGT 59.965 50.000 0.00 0.00 39.44 5.68
349 351 1.274167 ACGAAGAATTGACCAGCGGTA 59.726 47.619 0.09 0.00 35.25 4.02
350 352 1.927174 CGAAGAATTGACCAGCGGTAG 59.073 52.381 0.09 0.00 35.25 3.18
351 353 2.416836 CGAAGAATTGACCAGCGGTAGA 60.417 50.000 0.09 0.00 35.25 2.59
352 354 3.596214 GAAGAATTGACCAGCGGTAGAA 58.404 45.455 0.09 0.00 35.25 2.10
353 355 3.695830 AGAATTGACCAGCGGTAGAAA 57.304 42.857 0.09 0.00 35.25 2.52
354 356 4.015872 AGAATTGACCAGCGGTAGAAAA 57.984 40.909 0.09 0.00 35.25 2.29
355 357 4.394729 AGAATTGACCAGCGGTAGAAAAA 58.605 39.130 0.09 0.00 35.25 1.94
381 383 3.496870 GGAAAGAAAGAGAGTTGAGGGCA 60.497 47.826 0.00 0.00 0.00 5.36
386 388 1.219124 GAGAGTTGAGGGCATGCGA 59.781 57.895 12.44 0.00 0.00 5.10
415 417 2.899976 CTTACATGTGGTGGCGACATA 58.100 47.619 9.11 0.00 46.14 2.29
433 435 0.896940 TAACCCAGAGTCGTCGGCTT 60.897 55.000 0.00 0.00 0.00 4.35
434 436 2.125912 CCCAGAGTCGTCGGCTTG 60.126 66.667 0.00 1.47 0.00 4.01
459 461 0.398318 GCCTCCATGGTTAGGGCTAG 59.602 60.000 18.75 4.01 39.68 3.42
468 470 0.180642 GTTAGGGCTAGCAAGGACCC 59.819 60.000 18.24 7.22 43.17 4.46
469 471 0.252974 TTAGGGCTAGCAAGGACCCA 60.253 55.000 18.24 0.00 45.45 4.51
470 472 0.030092 TAGGGCTAGCAAGGACCCAT 60.030 55.000 18.24 0.00 45.45 4.00
481 483 1.313889 AGGACCCATGAGAGAGAGGA 58.686 55.000 0.00 0.00 0.00 3.71
482 484 1.865595 AGGACCCATGAGAGAGAGGAT 59.134 52.381 0.00 0.00 0.00 3.24
500 504 3.916989 AGGATAAAGGGTTTGAGGTGAGT 59.083 43.478 0.00 0.00 0.00 3.41
530 534 1.081174 TGGGAGAAAGAGAGATGGGGT 59.919 52.381 0.00 0.00 0.00 4.95
536 540 0.252284 AAGAGAGATGGGGTGTCGGT 60.252 55.000 0.00 0.00 0.00 4.69
552 556 3.456317 GTGACGTCACCCTCCACT 58.544 61.111 33.62 0.00 40.85 4.00
556 560 1.202964 TGACGTCACCCTCCACTAGAA 60.203 52.381 15.76 0.00 0.00 2.10
583 587 3.630148 GCACCGTCGCCATGATCG 61.630 66.667 0.00 0.00 0.00 3.69
587 591 1.734477 CCGTCGCCATGATCGATCC 60.734 63.158 22.31 6.16 38.29 3.36
613 617 1.689243 CCCCGCATCATCCTCTCACA 61.689 60.000 0.00 0.00 0.00 3.58
617 621 2.224233 CCGCATCATCCTCTCACATCTT 60.224 50.000 0.00 0.00 0.00 2.40
619 623 3.740452 CGCATCATCCTCTCACATCTTGT 60.740 47.826 0.00 0.00 0.00 3.16
638 642 1.000396 GCAGCACTGGATCCCCTTT 60.000 57.895 9.90 0.00 0.00 3.11
657 661 0.532573 TTCCTTTCTCTCGCAGCGAT 59.467 50.000 19.91 0.00 34.61 4.58
658 662 0.179127 TCCTTTCTCTCGCAGCGATG 60.179 55.000 19.91 14.39 34.61 3.84
667 671 2.393768 CGCAGCGATGGAGCAGTTT 61.394 57.895 9.98 0.00 40.15 2.66
680 684 2.682856 GAGCAGTTTTGTGTGTTGGAGA 59.317 45.455 0.00 0.00 0.00 3.71
681 685 2.423538 AGCAGTTTTGTGTGTTGGAGAC 59.576 45.455 0.00 0.00 0.00 3.36
706 714 1.610554 TTCTTCGGGAGGGTTAGCGG 61.611 60.000 0.00 0.00 0.00 5.52
717 725 3.404438 TTAGCGGCCGGGTGGATT 61.404 61.111 29.38 0.00 37.49 3.01
718 726 2.065185 TTAGCGGCCGGGTGGATTA 61.065 57.895 29.38 0.00 37.49 1.75
719 727 1.624479 TTAGCGGCCGGGTGGATTAA 61.624 55.000 29.38 1.18 37.49 1.40
720 728 2.314415 TAGCGGCCGGGTGGATTAAC 62.314 60.000 29.38 5.52 37.49 2.01
721 729 2.515290 CGGCCGGGTGGATTAACC 60.515 66.667 20.10 0.00 39.71 2.85
722 730 2.515290 GGCCGGGTGGATTAACCG 60.515 66.667 2.18 0.00 46.79 4.44
761 775 0.249911 CCAGAGTAGCGGCCCATTAC 60.250 60.000 0.00 0.00 0.00 1.89
768 782 2.897207 CGGCCCATTACGACAGGA 59.103 61.111 0.00 0.00 0.00 3.86
778 792 2.741878 TACGACAGGAGGCCCAGGTT 62.742 60.000 0.00 0.00 33.88 3.50
782 796 1.987855 CAGGAGGCCCAGGTTACGA 60.988 63.158 0.00 0.00 33.88 3.43
799 813 5.065988 GGTTACGATACATTGTGGCTGAAAT 59.934 40.000 0.00 0.00 0.00 2.17
800 814 6.259167 GGTTACGATACATTGTGGCTGAAATA 59.741 38.462 0.00 0.00 0.00 1.40
843 857 5.636121 ACTGTTTGAACGCATAATCTAACGA 59.364 36.000 0.00 0.00 35.14 3.85
855 869 7.582679 CGCATAATCTAACGATCGAAAACATTT 59.417 33.333 24.34 6.09 0.00 2.32
883 905 2.028112 TGAGACAGCTCGGCAGTTAAAT 60.028 45.455 0.00 0.00 44.33 1.40
1009 1051 2.038269 GCCGTGGAAATGCCGAAGA 61.038 57.895 0.00 0.00 40.66 2.87
1010 1052 1.376609 GCCGTGGAAATGCCGAAGAT 61.377 55.000 0.00 0.00 40.66 2.40
1020 1089 2.589492 GCCGAAGATCACCATCGCG 61.589 63.158 0.00 0.00 35.35 5.87
1021 1090 1.226974 CCGAAGATCACCATCGCGT 60.227 57.895 5.77 0.00 35.35 6.01
1025 1094 1.945354 AAGATCACCATCGCGTCGGT 61.945 55.000 15.00 15.00 33.75 4.69
1092 1161 2.890371 GACGAGGCATGGTACGGT 59.110 61.111 0.00 0.00 0.00 4.83
1120 1189 3.259314 TGGTGCAGGATGGCTGGT 61.259 61.111 0.00 0.00 35.86 4.00
1125 1194 2.360350 CAGGATGGCTGGTTGCGT 60.360 61.111 0.00 0.00 44.05 5.24
1144 1213 3.120683 GCGTGTCATGTTCGAGAATTTCA 60.121 43.478 0.00 0.00 0.00 2.69
1155 1224 0.320374 AGAATTTCACCGAGGACGCA 59.680 50.000 0.00 0.00 38.29 5.24
1167 1236 0.680280 AGGACGCAGACGAGTGGTAT 60.680 55.000 0.00 0.00 43.93 2.73
1266 1335 2.347490 GACGATGCCCACTGTGGT 59.653 61.111 24.32 7.12 35.17 4.16
1296 1368 2.032681 GGCGACAACCTCTGCCTT 59.967 61.111 0.00 0.00 44.16 4.35
1298 1370 1.598130 GCGACAACCTCTGCCTTGT 60.598 57.895 0.00 0.00 33.19 3.16
1302 1374 0.839946 ACAACCTCTGCCTTGTCTGT 59.160 50.000 0.00 0.00 0.00 3.41
1308 1380 4.290093 ACCTCTGCCTTGTCTGTGATATA 58.710 43.478 0.00 0.00 0.00 0.86
1335 1417 3.822996 CGGCGAGATCAAATACTACGAT 58.177 45.455 0.00 0.00 0.00 3.73
1354 1436 3.843304 CCGTCCTCGAGGCTGTAT 58.157 61.111 27.39 0.00 39.71 2.29
1385 1484 1.079127 GCGCCCTACTCACACACAT 60.079 57.895 0.00 0.00 0.00 3.21
1390 1489 4.237724 CGCCCTACTCACACACATATATG 58.762 47.826 11.29 11.29 0.00 1.78
1391 1490 4.262036 CGCCCTACTCACACACATATATGT 60.262 45.833 12.75 12.75 42.84 2.29
1402 1504 9.143155 TCACACACATATATGTTGTACTAGGAT 57.857 33.333 22.23 5.94 39.39 3.24
1444 1547 3.706594 CCAACTATGCAGGTAGAGAAGGA 59.293 47.826 1.33 0.00 0.00 3.36
1451 1554 2.769095 GCAGGTAGAGAAGGAACCTCAT 59.231 50.000 0.00 0.00 41.75 2.90
1456 1559 2.203584 AGAGAAGGAACCTCATGGCAT 58.796 47.619 0.00 0.00 36.63 4.40
1475 1578 3.843985 GTGGACGACGAAGAGCAC 58.156 61.111 0.00 0.00 0.00 4.40
1478 1581 1.286260 GGACGACGAAGAGCACTGT 59.714 57.895 0.00 0.00 0.00 3.55
1543 1646 4.329545 TCAGGACAAGGTGGGCGC 62.330 66.667 0.00 0.00 0.00 6.53
1594 1697 2.555199 GATCCAAGATCCGGTGTTGAG 58.445 52.381 13.13 6.04 33.09 3.02
1604 1707 0.242825 CGGTGTTGAGCGAGTTCCTA 59.757 55.000 0.00 0.00 46.19 2.94
1628 1739 2.104111 TGATGTGACAAAGAGGTTCGGT 59.896 45.455 0.00 0.00 0.00 4.69
1631 1742 2.104111 TGTGACAAAGAGGTTCGGTGAT 59.896 45.455 0.00 0.00 0.00 3.06
1634 1745 2.996621 GACAAAGAGGTTCGGTGATGAG 59.003 50.000 0.00 0.00 0.00 2.90
1648 1759 0.179034 GATGAGCAAGGGAAGGCGAT 60.179 55.000 0.00 0.00 34.54 4.58
1650 1761 1.221840 GAGCAAGGGAAGGCGATGA 59.778 57.895 0.00 0.00 34.54 2.92
1669 1783 3.806667 GGCATCTCAGGCAGCCCT 61.807 66.667 8.22 0.00 44.25 5.19
1716 1837 0.606673 GTCCAGCCTCACAAACTCCC 60.607 60.000 0.00 0.00 0.00 4.30
1718 1839 1.455849 CAGCCTCACAAACTCCCCA 59.544 57.895 0.00 0.00 0.00 4.96
1723 1844 2.779506 CCTCACAAACTCCCCAAGTAC 58.220 52.381 0.00 0.00 37.17 2.73
1738 1859 5.880887 CCCCAAGTACCTTGTCTTATTCTTC 59.119 44.000 3.53 0.00 39.58 2.87
1768 1892 7.520798 TGAAGGTATATCTCCTTGCATTCATT 58.479 34.615 14.36 0.00 44.19 2.57
1769 1893 8.659527 TGAAGGTATATCTCCTTGCATTCATTA 58.340 33.333 14.36 0.00 44.19 1.90
1821 1945 9.911788 ATAAATATAAATTCATCTGGATCGCCT 57.088 29.630 0.00 0.00 34.31 5.52
1822 1946 8.641498 AAATATAAATTCATCTGGATCGCCTT 57.359 30.769 0.00 0.00 34.31 4.35
1823 1947 9.739276 AAATATAAATTCATCTGGATCGCCTTA 57.261 29.630 0.00 0.00 34.31 2.69
1824 1948 8.723942 ATATAAATTCATCTGGATCGCCTTAC 57.276 34.615 0.00 0.00 34.31 2.34
1825 1949 4.422073 AATTCATCTGGATCGCCTTACA 57.578 40.909 0.00 0.00 34.31 2.41
1826 1950 4.630644 ATTCATCTGGATCGCCTTACAT 57.369 40.909 0.00 0.00 34.31 2.29
1827 1951 5.745312 ATTCATCTGGATCGCCTTACATA 57.255 39.130 0.00 0.00 34.31 2.29
1828 1952 4.790765 TCATCTGGATCGCCTTACATAG 57.209 45.455 0.00 0.00 34.31 2.23
1829 1953 4.407365 TCATCTGGATCGCCTTACATAGA 58.593 43.478 0.00 0.00 34.31 1.98
1830 1954 5.019470 TCATCTGGATCGCCTTACATAGAT 58.981 41.667 0.00 0.00 34.31 1.98
1831 1955 5.126222 TCATCTGGATCGCCTTACATAGATC 59.874 44.000 0.00 0.00 38.88 2.75
1832 1956 3.440522 TCTGGATCGCCTTACATAGATCG 59.559 47.826 0.00 0.00 40.09 3.69
1833 1957 2.094700 TGGATCGCCTTACATAGATCGC 60.095 50.000 0.00 0.00 40.09 4.58
1834 1958 2.531206 GATCGCCTTACATAGATCGCC 58.469 52.381 0.00 0.00 31.61 5.54
1835 1959 1.617322 TCGCCTTACATAGATCGCCT 58.383 50.000 0.00 0.00 0.00 5.52
1836 1960 1.961394 TCGCCTTACATAGATCGCCTT 59.039 47.619 0.00 0.00 0.00 4.35
1837 1961 3.151554 TCGCCTTACATAGATCGCCTTA 58.848 45.455 0.00 0.00 0.00 2.69
1838 1962 3.057736 TCGCCTTACATAGATCGCCTTAC 60.058 47.826 0.00 0.00 0.00 2.34
1839 1963 3.305131 CGCCTTACATAGATCGCCTTACA 60.305 47.826 0.00 0.00 0.00 2.41
1840 1964 4.238514 GCCTTACATAGATCGCCTTACAG 58.761 47.826 0.00 0.00 0.00 2.74
1841 1965 4.022242 GCCTTACATAGATCGCCTTACAGA 60.022 45.833 0.00 0.00 0.00 3.41
1842 1966 5.704888 CCTTACATAGATCGCCTTACAGAG 58.295 45.833 0.00 0.00 0.00 3.35
1843 1967 5.241949 CCTTACATAGATCGCCTTACAGAGT 59.758 44.000 0.00 0.00 0.00 3.24
1844 1968 6.430308 CCTTACATAGATCGCCTTACAGAGTA 59.570 42.308 0.00 0.00 0.00 2.59
1845 1969 7.040617 CCTTACATAGATCGCCTTACAGAGTAA 60.041 40.741 0.00 0.00 0.00 2.24
1846 1970 6.320494 ACATAGATCGCCTTACAGAGTAAG 57.680 41.667 9.39 9.39 0.00 2.34
1847 1971 5.828859 ACATAGATCGCCTTACAGAGTAAGT 59.171 40.000 13.92 0.00 0.00 2.24
1848 1972 6.996879 ACATAGATCGCCTTACAGAGTAAGTA 59.003 38.462 13.92 2.08 0.00 2.24
1849 1973 5.754543 AGATCGCCTTACAGAGTAAGTAC 57.245 43.478 13.92 6.63 0.00 2.73
1850 1974 5.191426 AGATCGCCTTACAGAGTAAGTACA 58.809 41.667 13.92 0.60 0.00 2.90
1853 1977 4.763793 TCGCCTTACAGAGTAAGTACAAGT 59.236 41.667 13.92 0.00 0.00 3.16
1856 1980 6.128902 CGCCTTACAGAGTAAGTACAAGTTTG 60.129 42.308 13.92 0.00 0.00 2.93
1875 2000 0.251787 GGGGCTGTTTGGATTGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
1918 2043 1.349688 ACTTAGTTCATTGACCGGGCA 59.650 47.619 5.41 5.41 0.00 5.36
1949 2080 6.826741 GGTAATGGTCACTAATTATGTGGTGT 59.173 38.462 12.27 0.00 36.21 4.16
1977 2110 5.753721 AGCATCTCAGTTCCTTTAGTTCT 57.246 39.130 0.00 0.00 0.00 3.01
1978 2111 5.729510 AGCATCTCAGTTCCTTTAGTTCTC 58.270 41.667 0.00 0.00 0.00 2.87
1979 2112 4.873259 GCATCTCAGTTCCTTTAGTTCTCC 59.127 45.833 0.00 0.00 0.00 3.71
1980 2113 5.423886 CATCTCAGTTCCTTTAGTTCTCCC 58.576 45.833 0.00 0.00 0.00 4.30
1983 2457 4.969484 TCAGTTCCTTTAGTTCTCCCAAC 58.031 43.478 0.00 0.00 0.00 3.77
1989 2463 4.107311 TCCTTTAGTTCTCCCAACCCAAAT 59.893 41.667 0.00 0.00 0.00 2.32
2010 2485 3.194005 TGTTGGAGAGTTGTCAAGGAC 57.806 47.619 0.00 0.00 0.00 3.85
2045 2520 5.673514 CCAATTATTTGGCTTGCCTATGTT 58.326 37.500 13.18 4.34 45.71 2.71
2047 2522 7.271511 CCAATTATTTGGCTTGCCTATGTTTA 58.728 34.615 13.18 0.00 45.71 2.01
2048 2523 7.224557 CCAATTATTTGGCTTGCCTATGTTTAC 59.775 37.037 13.18 0.00 45.71 2.01
2052 2540 2.298610 GGCTTGCCTATGTTTACCTCC 58.701 52.381 4.11 0.00 0.00 4.30
2056 2544 3.469008 TGCCTATGTTTACCTCCGATG 57.531 47.619 0.00 0.00 0.00 3.84
2064 2552 9.720769 CCTATGTTTACCTCCGATGTATATTTT 57.279 33.333 0.00 0.00 0.00 1.82
2072 2560 7.162082 ACCTCCGATGTATATTTTCCTGATTC 58.838 38.462 0.00 0.00 0.00 2.52
2073 2561 7.016661 ACCTCCGATGTATATTTTCCTGATTCT 59.983 37.037 0.00 0.00 0.00 2.40
2077 2565 9.224267 CCGATGTATATTTTCCTGATTCTGAAT 57.776 33.333 1.81 1.81 0.00 2.57
2085 2573 0.661552 CTGATTCTGAATGGCGCTGG 59.338 55.000 7.64 0.00 0.00 4.85
2087 2575 0.749454 GATTCTGAATGGCGCTGGGT 60.749 55.000 7.64 0.00 0.00 4.51
2089 2577 0.546122 TTCTGAATGGCGCTGGGTAT 59.454 50.000 7.64 0.00 0.00 2.73
2090 2578 1.419381 TCTGAATGGCGCTGGGTATA 58.581 50.000 7.64 0.00 0.00 1.47
2091 2579 1.344438 TCTGAATGGCGCTGGGTATAG 59.656 52.381 7.64 0.00 0.00 1.31
2092 2580 1.344438 CTGAATGGCGCTGGGTATAGA 59.656 52.381 7.64 0.00 0.00 1.98
2093 2581 1.977854 TGAATGGCGCTGGGTATAGAT 59.022 47.619 7.64 0.00 0.00 1.98
2094 2582 2.289631 TGAATGGCGCTGGGTATAGATG 60.290 50.000 7.64 0.00 0.00 2.90
2095 2583 1.644509 ATGGCGCTGGGTATAGATGA 58.355 50.000 7.64 0.00 0.00 2.92
2099 2587 1.406069 GCGCTGGGTATAGATGATGGG 60.406 57.143 0.00 0.00 0.00 4.00
2190 2680 5.696270 TGCAAACAAGTATATATGCCTCTCG 59.304 40.000 0.00 0.00 33.01 4.04
2191 2681 5.696724 GCAAACAAGTATATATGCCTCTCGT 59.303 40.000 0.00 0.00 0.00 4.18
2243 2733 5.627135 AGAAACGAGTCTTCCCCATTTTTA 58.373 37.500 0.00 0.00 0.00 1.52
2246 2736 3.279434 CGAGTCTTCCCCATTTTTAGGG 58.721 50.000 0.00 0.00 46.36 3.53
2262 2752 0.494095 AGGGGAAGACTCCAACTCCT 59.506 55.000 0.00 0.00 44.51 3.69
2266 2756 3.442076 GGGAAGACTCCAACTCCTAGAA 58.558 50.000 0.00 0.00 44.51 2.10
2284 2774 3.891049 AGAACTAGGAATTCACCCATGC 58.109 45.455 7.93 0.00 0.00 4.06
2299 2789 1.250328 CATGCTTGCCTGGTGAGAAA 58.750 50.000 0.00 0.00 0.00 2.52
2321 2814 4.327680 AGAAAGGTTAGAGGTGCACATTC 58.672 43.478 20.43 15.30 0.00 2.67
2328 2821 0.593128 GAGGTGCACATTCGTTTGCT 59.407 50.000 20.43 2.34 39.62 3.91
2351 2844 1.077805 TAGTTGCCTCCCCGTCTCA 59.922 57.895 0.00 0.00 0.00 3.27
2354 2847 1.612146 TTGCCTCCCCGTCTCATCA 60.612 57.895 0.00 0.00 0.00 3.07
2362 2855 1.889829 CCCCGTCTCATCATCCTACTC 59.110 57.143 0.00 0.00 0.00 2.59
2372 2865 6.772233 TCTCATCATCCTACTCTTCTTCTCTG 59.228 42.308 0.00 0.00 0.00 3.35
2377 2870 2.159310 CCTACTCTTCTTCTCTGTGGCG 60.159 54.545 0.00 0.00 0.00 5.69
2391 2884 3.254411 TCTGTGGCGCATTTGTTATTTGA 59.746 39.130 10.83 0.00 0.00 2.69
2417 2910 0.604780 GCTGCAAGAGAGGCAACTGA 60.605 55.000 0.00 0.00 44.12 3.41
2431 2924 3.068024 GGCAACTGACAAGATGGTTTTGA 59.932 43.478 0.00 0.00 0.00 2.69
2433 2926 5.048083 GGCAACTGACAAGATGGTTTTGATA 60.048 40.000 0.00 0.00 0.00 2.15
2435 2928 6.749118 GCAACTGACAAGATGGTTTTGATATC 59.251 38.462 0.00 0.00 0.00 1.63
2437 2930 6.406370 ACTGACAAGATGGTTTTGATATCGA 58.594 36.000 0.00 0.00 0.00 3.59
2444 2937 3.591023 TGGTTTTGATATCGAGCGACAA 58.409 40.909 0.00 0.00 0.00 3.18
2469 2974 1.816835 GGTCTGACTATGGTCACGACA 59.183 52.381 26.83 5.97 46.19 4.35
2526 3032 9.844257 AATTTGGAATCTCTTCTTCGAATAGAT 57.156 29.630 0.00 2.68 0.00 1.98
2529 3035 9.920133 TTGGAATCTCTTCTTCGAATAGATATG 57.080 33.333 0.00 0.00 0.00 1.78
2531 3037 8.250332 GGAATCTCTTCTTCGAATAGATATGCT 58.750 37.037 0.00 0.00 0.00 3.79
2543 3049 6.096141 CGAATAGATATGCTAGATCCAGTGGT 59.904 42.308 9.54 0.00 31.33 4.16
2554 3060 1.904865 CCAGTGGTGCCAAGCATGT 60.905 57.895 0.00 0.00 41.91 3.21
2585 3093 1.306296 GCCAACAATCAGCCCCCTA 59.694 57.895 0.00 0.00 0.00 3.53
2600 3108 2.198980 CTAGCCGCTAGGGGGAGT 59.801 66.667 25.83 2.74 37.91 3.85
2614 3122 2.672996 GAGTGGTGGGCGCACAAT 60.673 61.111 31.75 18.55 0.00 2.71
2615 3123 2.981560 GAGTGGTGGGCGCACAATG 61.982 63.158 31.75 0.00 0.00 2.82
2616 3124 4.054825 GTGGTGGGCGCACAATGG 62.055 66.667 31.75 0.00 0.00 3.16
2670 3178 0.753262 ACTCGACAACAACCTGAGCT 59.247 50.000 0.00 0.00 0.00 4.09
2688 3196 0.661552 CTGATGCTGGCAAATCCTCG 59.338 55.000 0.00 0.00 35.26 4.63
2705 3213 3.838271 GAGGGCACGAGCATCCGA 61.838 66.667 7.26 0.00 44.61 4.55
2710 3219 3.461773 CACGAGCATCCGACCCCT 61.462 66.667 0.00 0.00 0.00 4.79
2711 3220 3.461773 ACGAGCATCCGACCCCTG 61.462 66.667 0.00 0.00 0.00 4.45
2712 3221 4.899239 CGAGCATCCGACCCCTGC 62.899 72.222 0.00 0.00 36.15 4.85
2715 3224 2.361104 GCATCCGACCCCTGCAAA 60.361 61.111 0.00 0.00 35.96 3.68
2716 3225 1.754234 GCATCCGACCCCTGCAAAT 60.754 57.895 0.00 0.00 35.96 2.32
2717 3226 1.728490 GCATCCGACCCCTGCAAATC 61.728 60.000 0.00 0.00 35.96 2.17
2719 3228 0.625849 ATCCGACCCCTGCAAATCTT 59.374 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.703411 CCCAAAGGAGAGCCACAAAA 58.297 50.000 0.00 0.00 36.29 2.44
16 17 0.809636 CGCGTTCATCATGTAGCCCA 60.810 55.000 0.00 0.00 0.00 5.36
18 19 1.193203 CATCGCGTTCATCATGTAGCC 59.807 52.381 5.77 0.00 0.00 3.93
19 20 1.860950 ACATCGCGTTCATCATGTAGC 59.139 47.619 5.77 0.00 0.00 3.58
32 33 3.302675 CCATCAGTAAATGTCACATCGCG 60.303 47.826 0.00 0.00 0.00 5.87
42 43 5.068067 TGCCAATCATGACCATCAGTAAATG 59.932 40.000 0.00 0.00 0.00 2.32
46 47 3.929955 TGCCAATCATGACCATCAGTA 57.070 42.857 0.00 0.00 0.00 2.74
58 59 5.130975 ACAGATCACCTATACTTGCCAATCA 59.869 40.000 0.00 0.00 0.00 2.57
71 72 1.204704 CACCGCTCAACAGATCACCTA 59.795 52.381 0.00 0.00 0.00 3.08
72 73 0.036952 CACCGCTCAACAGATCACCT 60.037 55.000 0.00 0.00 0.00 4.00
76 77 1.134699 TCATCCACCGCTCAACAGATC 60.135 52.381 0.00 0.00 0.00 2.75
77 78 0.904649 TCATCCACCGCTCAACAGAT 59.095 50.000 0.00 0.00 0.00 2.90
78 79 0.684535 TTCATCCACCGCTCAACAGA 59.315 50.000 0.00 0.00 0.00 3.41
80 81 1.271325 ACATTCATCCACCGCTCAACA 60.271 47.619 0.00 0.00 0.00 3.33
81 82 1.453155 ACATTCATCCACCGCTCAAC 58.547 50.000 0.00 0.00 0.00 3.18
84 85 2.476185 CGAAAACATTCATCCACCGCTC 60.476 50.000 0.00 0.00 0.00 5.03
88 90 3.066760 GGGATCGAAAACATTCATCCACC 59.933 47.826 15.44 0.00 33.85 4.61
138 140 5.427378 TGAAGTGAGTCATGTTCAAAGACA 58.573 37.500 15.12 0.00 34.80 3.41
203 205 9.452065 GGTGAACATTAGTTTCTCTTTTCTTTC 57.548 33.333 0.00 0.00 38.30 2.62
204 206 8.414003 GGGTGAACATTAGTTTCTCTTTTCTTT 58.586 33.333 0.00 0.00 38.30 2.52
205 207 7.780271 AGGGTGAACATTAGTTTCTCTTTTCTT 59.220 33.333 0.00 0.00 38.30 2.52
206 208 7.290813 AGGGTGAACATTAGTTTCTCTTTTCT 58.709 34.615 0.00 0.00 38.30 2.52
207 209 7.511959 AGGGTGAACATTAGTTTCTCTTTTC 57.488 36.000 0.00 0.00 38.30 2.29
208 210 7.898014 AAGGGTGAACATTAGTTTCTCTTTT 57.102 32.000 0.00 0.00 38.30 2.27
209 211 7.014326 GGAAAGGGTGAACATTAGTTTCTCTTT 59.986 37.037 10.01 10.01 41.13 2.52
210 212 6.490381 GGAAAGGGTGAACATTAGTTTCTCTT 59.510 38.462 0.00 0.00 38.30 2.85
211 213 6.004574 GGAAAGGGTGAACATTAGTTTCTCT 58.995 40.000 0.00 0.00 38.30 3.10
212 214 5.768164 TGGAAAGGGTGAACATTAGTTTCTC 59.232 40.000 0.00 0.00 38.30 2.87
213 215 5.701224 TGGAAAGGGTGAACATTAGTTTCT 58.299 37.500 0.00 0.00 38.30 2.52
214 216 6.590234 ATGGAAAGGGTGAACATTAGTTTC 57.410 37.500 0.00 0.00 38.30 2.78
215 217 6.741240 GCAATGGAAAGGGTGAACATTAGTTT 60.741 38.462 0.00 0.00 38.30 2.66
216 218 5.279456 GCAATGGAAAGGGTGAACATTAGTT 60.279 40.000 0.00 0.00 41.64 2.24
217 219 4.220602 GCAATGGAAAGGGTGAACATTAGT 59.779 41.667 0.00 0.00 31.19 2.24
218 220 4.675146 CGCAATGGAAAGGGTGAACATTAG 60.675 45.833 0.00 0.00 31.19 1.73
219 221 3.192422 CGCAATGGAAAGGGTGAACATTA 59.808 43.478 0.00 0.00 31.19 1.90
220 222 2.029110 CGCAATGGAAAGGGTGAACATT 60.029 45.455 0.00 0.00 32.43 2.71
221 223 1.545582 CGCAATGGAAAGGGTGAACAT 59.454 47.619 0.00 0.00 0.00 2.71
222 224 0.958091 CGCAATGGAAAGGGTGAACA 59.042 50.000 0.00 0.00 0.00 3.18
223 225 1.200020 CTCGCAATGGAAAGGGTGAAC 59.800 52.381 0.00 0.00 0.00 3.18
224 226 1.202879 ACTCGCAATGGAAAGGGTGAA 60.203 47.619 0.00 0.00 0.00 3.18
225 227 0.400213 ACTCGCAATGGAAAGGGTGA 59.600 50.000 0.00 0.00 0.00 4.02
226 228 2.107950 TACTCGCAATGGAAAGGGTG 57.892 50.000 0.00 0.00 0.00 4.61
227 229 2.871096 TTACTCGCAATGGAAAGGGT 57.129 45.000 0.00 0.00 0.00 4.34
228 230 2.159379 GCTTTACTCGCAATGGAAAGGG 60.159 50.000 7.21 0.00 0.00 3.95
229 231 2.476185 CGCTTTACTCGCAATGGAAAGG 60.476 50.000 7.21 0.00 0.00 3.11
230 232 2.159627 ACGCTTTACTCGCAATGGAAAG 59.840 45.455 0.00 0.00 0.00 2.62
231 233 2.095969 CACGCTTTACTCGCAATGGAAA 60.096 45.455 0.00 0.00 0.00 3.13
232 234 1.463056 CACGCTTTACTCGCAATGGAA 59.537 47.619 0.00 0.00 0.00 3.53
233 235 1.075542 CACGCTTTACTCGCAATGGA 58.924 50.000 0.00 0.00 0.00 3.41
234 236 0.096976 CCACGCTTTACTCGCAATGG 59.903 55.000 0.00 0.00 0.00 3.16
235 237 0.521242 GCCACGCTTTACTCGCAATG 60.521 55.000 0.00 0.00 0.00 2.82
236 238 0.673644 AGCCACGCTTTACTCGCAAT 60.674 50.000 0.00 0.00 33.89 3.56
237 239 0.038067 TAGCCACGCTTTACTCGCAA 60.038 50.000 0.00 0.00 40.44 4.85
238 240 0.038067 TTAGCCACGCTTTACTCGCA 60.038 50.000 0.00 0.00 40.44 5.10
239 241 1.060698 CTTTAGCCACGCTTTACTCGC 59.939 52.381 0.00 0.00 40.44 5.03
240 242 2.334838 ACTTTAGCCACGCTTTACTCG 58.665 47.619 0.00 0.00 40.44 4.18
241 243 4.507021 GGATACTTTAGCCACGCTTTACTC 59.493 45.833 0.00 0.00 40.44 2.59
242 244 4.439968 GGATACTTTAGCCACGCTTTACT 58.560 43.478 0.00 0.00 40.44 2.24
243 245 4.790810 GGATACTTTAGCCACGCTTTAC 57.209 45.455 0.00 0.00 40.44 2.01
259 261 2.027751 GCCACGCGAGGAGGATAC 59.972 66.667 27.39 3.12 32.87 2.24
260 262 2.123854 AGCCACGCGAGGAGGATA 60.124 61.111 27.39 0.00 32.87 2.59
261 263 3.842923 CAGCCACGCGAGGAGGAT 61.843 66.667 27.39 11.53 32.87 3.24
263 265 4.504916 CTCAGCCACGCGAGGAGG 62.505 72.222 27.39 16.39 0.00 4.30
264 266 3.288308 AACTCAGCCACGCGAGGAG 62.288 63.158 27.39 16.74 35.05 3.69
265 267 3.282745 GAACTCAGCCACGCGAGGA 62.283 63.158 27.39 4.38 35.05 3.71
266 268 2.811317 GAACTCAGCCACGCGAGG 60.811 66.667 19.00 19.00 35.05 4.63
267 269 1.803519 GAGAACTCAGCCACGCGAG 60.804 63.158 15.93 4.16 36.12 5.03
268 270 2.258591 GAGAACTCAGCCACGCGA 59.741 61.111 15.93 0.00 0.00 5.87
269 271 3.175240 CGAGAACTCAGCCACGCG 61.175 66.667 3.53 3.53 0.00 6.01
270 272 3.482783 GCGAGAACTCAGCCACGC 61.483 66.667 0.00 0.00 39.33 5.34
271 273 2.771763 AAGGCGAGAACTCAGCCACG 62.772 60.000 25.91 7.05 45.18 4.94
272 274 1.004440 AAGGCGAGAACTCAGCCAC 60.004 57.895 25.91 10.89 45.18 5.01
273 275 1.004560 CAAGGCGAGAACTCAGCCA 60.005 57.895 25.91 0.00 45.18 4.75
274 276 2.394563 GCAAGGCGAGAACTCAGCC 61.395 63.158 20.84 20.84 44.05 4.85
275 277 2.394563 GGCAAGGCGAGAACTCAGC 61.395 63.158 2.78 6.42 0.00 4.26
276 278 2.097038 CGGCAAGGCGAGAACTCAG 61.097 63.158 10.75 0.00 0.00 3.35
277 279 2.048222 CGGCAAGGCGAGAACTCA 60.048 61.111 10.75 0.00 0.00 3.41
278 280 2.095252 GTCGGCAAGGCGAGAACTC 61.095 63.158 19.19 3.47 0.00 3.01
279 281 2.048127 GTCGGCAAGGCGAGAACT 60.048 61.111 19.19 0.00 0.00 3.01
280 282 2.357034 TGTCGGCAAGGCGAGAAC 60.357 61.111 19.19 9.00 0.00 3.01
281 283 2.357034 GTGTCGGCAAGGCGAGAA 60.357 61.111 19.19 8.03 0.00 2.87
282 284 3.303135 AGTGTCGGCAAGGCGAGA 61.303 61.111 19.19 15.36 0.00 4.04
283 285 3.114616 CAGTGTCGGCAAGGCGAG 61.115 66.667 19.19 3.85 0.00 5.03
284 286 4.680237 CCAGTGTCGGCAAGGCGA 62.680 66.667 14.92 14.92 0.00 5.54
292 294 3.499737 GCGGAATGCCAGTGTCGG 61.500 66.667 0.00 0.00 37.76 4.79
318 320 0.093026 ATTCTTCGTTTTCGCGCGAG 59.907 50.000 32.74 21.09 43.73 5.03
319 321 0.509499 AATTCTTCGTTTTCGCGCGA 59.491 45.000 31.40 31.40 43.73 5.87
320 322 0.623403 CAATTCTTCGTTTTCGCGCG 59.377 50.000 26.76 26.76 43.73 6.86
321 323 1.637563 GTCAATTCTTCGTTTTCGCGC 59.362 47.619 0.00 0.00 43.73 6.86
322 324 2.230864 GGTCAATTCTTCGTTTTCGCG 58.769 47.619 0.00 0.00 43.73 5.87
323 325 3.226347 CTGGTCAATTCTTCGTTTTCGC 58.774 45.455 0.00 0.00 43.73 4.70
324 326 3.226347 GCTGGTCAATTCTTCGTTTTCG 58.774 45.455 0.00 0.00 45.64 3.46
325 327 3.226347 CGCTGGTCAATTCTTCGTTTTC 58.774 45.455 0.00 0.00 0.00 2.29
326 328 2.031157 CCGCTGGTCAATTCTTCGTTTT 60.031 45.455 0.00 0.00 0.00 2.43
327 329 1.535462 CCGCTGGTCAATTCTTCGTTT 59.465 47.619 0.00 0.00 0.00 3.60
328 330 1.156736 CCGCTGGTCAATTCTTCGTT 58.843 50.000 0.00 0.00 0.00 3.85
329 331 0.034896 ACCGCTGGTCAATTCTTCGT 59.965 50.000 0.00 0.00 0.00 3.85
330 332 1.927174 CTACCGCTGGTCAATTCTTCG 59.073 52.381 3.45 0.00 37.09 3.79
331 333 3.247006 TCTACCGCTGGTCAATTCTTC 57.753 47.619 3.45 0.00 37.09 2.87
332 334 3.695830 TTCTACCGCTGGTCAATTCTT 57.304 42.857 3.45 0.00 37.09 2.52
333 335 3.695830 TTTCTACCGCTGGTCAATTCT 57.304 42.857 3.45 0.00 37.09 2.40
334 336 4.759516 TTTTTCTACCGCTGGTCAATTC 57.240 40.909 3.45 0.00 37.09 2.17
354 356 6.322456 CCCTCAACTCTCTTTCTTTCCTTTTT 59.678 38.462 0.00 0.00 0.00 1.94
355 357 5.830457 CCCTCAACTCTCTTTCTTTCCTTTT 59.170 40.000 0.00 0.00 0.00 2.27
356 358 5.380900 CCCTCAACTCTCTTTCTTTCCTTT 58.619 41.667 0.00 0.00 0.00 3.11
357 359 4.748239 GCCCTCAACTCTCTTTCTTTCCTT 60.748 45.833 0.00 0.00 0.00 3.36
358 360 3.244735 GCCCTCAACTCTCTTTCTTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
359 361 3.078097 GCCCTCAACTCTCTTTCTTTCC 58.922 50.000 0.00 0.00 0.00 3.13
362 364 3.683802 CATGCCCTCAACTCTCTTTCTT 58.316 45.455 0.00 0.00 0.00 2.52
381 383 0.546122 TGTAAGCCCCATCTTCGCAT 59.454 50.000 0.00 0.00 0.00 4.73
386 388 1.640670 ACCACATGTAAGCCCCATCTT 59.359 47.619 0.00 0.00 0.00 2.40
415 417 2.207924 AAGCCGACGACTCTGGGTT 61.208 57.895 0.00 0.00 38.58 4.11
434 436 3.697439 TAACCATGGAGGCAGCGGC 62.697 63.158 21.47 0.00 43.14 6.53
443 445 1.490490 CTTGCTAGCCCTAACCATGGA 59.510 52.381 21.47 0.00 0.00 3.41
459 461 1.138661 CTCTCTCTCATGGGTCCTTGC 59.861 57.143 0.00 0.00 0.00 4.01
468 470 5.885449 AACCCTTTATCCTCTCTCTCATG 57.115 43.478 0.00 0.00 0.00 3.07
469 471 5.966935 TCAAACCCTTTATCCTCTCTCTCAT 59.033 40.000 0.00 0.00 0.00 2.90
470 472 5.342017 TCAAACCCTTTATCCTCTCTCTCA 58.658 41.667 0.00 0.00 0.00 3.27
481 483 4.807643 GCTCACTCACCTCAAACCCTTTAT 60.808 45.833 0.00 0.00 0.00 1.40
482 484 3.496160 GCTCACTCACCTCAAACCCTTTA 60.496 47.826 0.00 0.00 0.00 1.85
500 504 2.690497 CTCTTTCTCCCACGATAGCTCA 59.310 50.000 0.00 0.00 42.67 4.26
536 540 0.402887 TCTAGTGGAGGGTGACGTCA 59.597 55.000 15.76 15.76 46.90 4.35
540 544 4.342665 CCTATCTTTCTAGTGGAGGGTGAC 59.657 50.000 0.00 0.00 0.00 3.67
547 551 3.451178 GTGCACCCTATCTTTCTAGTGGA 59.549 47.826 5.22 0.00 0.00 4.02
552 556 2.429610 GACGGTGCACCCTATCTTTCTA 59.570 50.000 29.95 0.00 0.00 2.10
556 560 1.515954 CGACGGTGCACCCTATCTT 59.484 57.895 29.95 7.37 0.00 2.40
583 587 0.393537 GATGCGGGGATGGATGGATC 60.394 60.000 0.00 0.00 0.00 3.36
587 591 0.679002 GGATGATGCGGGGATGGATG 60.679 60.000 0.00 0.00 0.00 3.51
613 617 1.681166 GGATCCAGTGCTGCACAAGAT 60.681 52.381 31.90 29.21 36.74 2.40
617 621 2.352422 GGGATCCAGTGCTGCACA 59.648 61.111 31.90 14.26 36.74 4.57
619 623 1.792757 AAAGGGGATCCAGTGCTGCA 61.793 55.000 15.23 0.00 34.83 4.41
625 629 2.996742 AGAAAGGAAAAGGGGATCCAGT 59.003 45.455 15.23 0.00 38.23 4.00
627 631 3.267031 GAGAGAAAGGAAAAGGGGATCCA 59.733 47.826 15.23 0.00 38.23 3.41
638 642 0.532573 ATCGCTGCGAGAGAAAGGAA 59.467 50.000 29.23 2.87 39.91 3.36
657 661 1.476085 CCAACACACAAAACTGCTCCA 59.524 47.619 0.00 0.00 0.00 3.86
658 662 1.748493 TCCAACACACAAAACTGCTCC 59.252 47.619 0.00 0.00 0.00 4.70
706 714 3.206957 GCGGTTAATCCACCCGGC 61.207 66.667 0.00 0.00 41.96 6.13
738 752 3.400054 GGCCGCTACTCTGGGGTT 61.400 66.667 0.00 0.00 41.45 4.11
761 775 1.987855 TAACCTGGGCCTCCTGTCG 60.988 63.158 4.53 0.00 0.00 4.35
768 782 1.802553 ATGTATCGTAACCTGGGCCT 58.197 50.000 4.53 0.00 0.00 5.19
778 792 7.766738 TCTTTATTTCAGCCACAATGTATCGTA 59.233 33.333 0.00 0.00 0.00 3.43
782 796 8.627403 CAGATCTTTATTTCAGCCACAATGTAT 58.373 33.333 0.00 0.00 0.00 2.29
843 857 8.642908 TGTCTCACGATATAAATGTTTTCGAT 57.357 30.769 0.00 0.00 34.15 3.59
855 869 1.535896 GCCGAGCTGTCTCACGATATA 59.464 52.381 0.00 0.00 39.30 0.86
984 1026 1.017177 GCATTTCCACGGCACTACGA 61.017 55.000 0.00 0.00 37.61 3.43
986 1028 1.800681 GGCATTTCCACGGCACTAC 59.199 57.895 0.00 0.00 34.01 2.73
987 1029 1.743623 CGGCATTTCCACGGCACTA 60.744 57.895 0.00 0.00 34.01 2.74
995 1037 1.004161 TGGTGATCTTCGGCATTTCCA 59.996 47.619 0.00 0.00 34.01 3.53
1073 1142 2.767445 CCGTACCATGCCTCGTCGA 61.767 63.158 0.00 0.00 0.00 4.20
1113 1182 2.112928 ATGACACGCAACCAGCCA 59.887 55.556 0.00 0.00 41.38 4.75
1120 1189 1.859383 TTCTCGAACATGACACGCAA 58.141 45.000 0.00 0.00 0.00 4.85
1125 1194 3.431912 CGGTGAAATTCTCGAACATGACA 59.568 43.478 0.00 0.00 0.00 3.58
1144 1213 3.432588 CTCGTCTGCGTCCTCGGT 61.433 66.667 0.00 0.00 39.49 4.69
1155 1224 1.133884 TCCGGATCATACCACTCGTCT 60.134 52.381 0.00 0.00 0.00 4.18
1243 1312 3.717294 GTGGGCATCGTCCAGGGT 61.717 66.667 0.00 0.00 38.31 4.34
1248 1317 2.436646 CCACAGTGGGCATCGTCC 60.437 66.667 12.40 0.00 32.67 4.79
1285 1354 1.131638 TCACAGACAAGGCAGAGGTT 58.868 50.000 0.00 0.00 0.00 3.50
1287 1356 3.834489 ATATCACAGACAAGGCAGAGG 57.166 47.619 0.00 0.00 0.00 3.69
1296 1368 1.066454 CCGCCGTGTATATCACAGACA 59.934 52.381 6.25 0.00 46.44 3.41
1298 1370 0.031585 GCCGCCGTGTATATCACAGA 59.968 55.000 6.25 0.00 46.44 3.41
1302 1374 1.167781 TCTCGCCGCCGTGTATATCA 61.168 55.000 0.00 0.00 35.54 2.15
1308 1380 2.852495 ATTTGATCTCGCCGCCGTGT 62.852 55.000 0.00 0.00 35.54 4.49
1350 1432 2.795973 CGACGCGGAGGACATACA 59.204 61.111 12.47 0.00 0.00 2.29
1402 1504 3.458857 TGGTCGGGGCCAATTATTACTAA 59.541 43.478 4.39 0.00 35.25 2.24
1426 1529 3.964031 AGGTTCCTTCTCTACCTGCATAG 59.036 47.826 0.00 0.00 40.68 2.23
1444 1547 0.392998 GTCCACGATGCCATGAGGTT 60.393 55.000 0.00 0.00 37.19 3.50
1465 1568 1.951130 CACGCACAGTGCTCTTCGT 60.951 57.895 23.15 10.39 44.72 3.85
1526 1629 4.329545 GCGCCCACCTTGTCCTGA 62.330 66.667 0.00 0.00 0.00 3.86
1543 1646 1.534175 GCACGAAGTAGATCACCTCGG 60.534 57.143 15.74 9.12 43.91 4.63
1551 1654 2.164624 GTGACTCCTGCACGAAGTAGAT 59.835 50.000 0.00 0.00 41.61 1.98
1594 1697 3.181486 TGTCACATCATCTAGGAACTCGC 60.181 47.826 0.00 0.00 41.75 5.03
1604 1707 4.248859 CGAACCTCTTTGTCACATCATCT 58.751 43.478 0.00 0.00 0.00 2.90
1628 1739 1.078214 CGCCTTCCCTTGCTCATCA 60.078 57.895 0.00 0.00 0.00 3.07
1631 1742 1.078214 CATCGCCTTCCCTTGCTCA 60.078 57.895 0.00 0.00 0.00 4.26
1634 1745 2.464459 CGTCATCGCCTTCCCTTGC 61.464 63.158 0.00 0.00 0.00 4.01
1648 1759 2.580815 CTGCCTGAGATGCCGTCA 59.419 61.111 0.00 0.00 0.00 4.35
1650 1761 4.479993 GGCTGCCTGAGATGCCGT 62.480 66.667 12.43 0.00 35.79 5.68
1738 1859 9.512588 AATGCAAGGAGATATACCTTCATTAAG 57.487 33.333 20.75 10.28 44.65 1.85
1743 1864 6.499106 TGAATGCAAGGAGATATACCTTCA 57.501 37.500 9.80 10.85 44.65 3.02
1795 1919 9.911788 AGGCGATCCAGATGAATTTATATTTAT 57.088 29.630 0.00 0.00 33.74 1.40
1796 1920 9.739276 AAGGCGATCCAGATGAATTTATATTTA 57.261 29.630 0.00 0.00 33.74 1.40
1797 1921 8.641498 AAGGCGATCCAGATGAATTTATATTT 57.359 30.769 0.00 0.00 33.74 1.40
1798 1922 9.167311 GTAAGGCGATCCAGATGAATTTATATT 57.833 33.333 0.00 0.00 33.74 1.28
1799 1923 8.321353 TGTAAGGCGATCCAGATGAATTTATAT 58.679 33.333 0.00 0.00 33.74 0.86
1800 1924 7.676004 TGTAAGGCGATCCAGATGAATTTATA 58.324 34.615 0.00 0.00 33.74 0.98
1801 1925 6.533730 TGTAAGGCGATCCAGATGAATTTAT 58.466 36.000 0.00 0.00 33.74 1.40
1802 1926 5.924356 TGTAAGGCGATCCAGATGAATTTA 58.076 37.500 0.00 0.00 33.74 1.40
1803 1927 4.780815 TGTAAGGCGATCCAGATGAATTT 58.219 39.130 0.00 0.00 33.74 1.82
1804 1928 4.422073 TGTAAGGCGATCCAGATGAATT 57.578 40.909 0.00 0.00 33.74 2.17
1805 1929 4.630644 ATGTAAGGCGATCCAGATGAAT 57.369 40.909 0.00 0.00 33.74 2.57
1806 1930 4.832823 TCTATGTAAGGCGATCCAGATGAA 59.167 41.667 0.00 0.00 33.74 2.57
1807 1931 4.407365 TCTATGTAAGGCGATCCAGATGA 58.593 43.478 0.00 0.00 33.74 2.92
1808 1932 4.790765 TCTATGTAAGGCGATCCAGATG 57.209 45.455 0.00 0.00 33.74 2.90
1809 1933 4.097135 CGATCTATGTAAGGCGATCCAGAT 59.903 45.833 0.00 0.00 33.74 2.90
1810 1934 3.440522 CGATCTATGTAAGGCGATCCAGA 59.559 47.826 0.00 0.00 33.74 3.86
1811 1935 3.763902 CGATCTATGTAAGGCGATCCAG 58.236 50.000 0.00 0.00 33.74 3.86
1812 1936 2.094700 GCGATCTATGTAAGGCGATCCA 60.095 50.000 0.00 0.00 33.74 3.41
1813 1937 2.531206 GCGATCTATGTAAGGCGATCC 58.469 52.381 0.00 0.00 30.98 3.36
1814 1938 2.164624 AGGCGATCTATGTAAGGCGATC 59.835 50.000 0.00 0.00 0.00 3.69
1815 1939 2.171840 AGGCGATCTATGTAAGGCGAT 58.828 47.619 0.00 0.00 0.00 4.58
1816 1940 1.617322 AGGCGATCTATGTAAGGCGA 58.383 50.000 0.00 0.00 0.00 5.54
1817 1941 2.440539 AAGGCGATCTATGTAAGGCG 57.559 50.000 0.00 0.00 0.00 5.52
1818 1942 4.022242 TCTGTAAGGCGATCTATGTAAGGC 60.022 45.833 0.00 0.00 0.00 4.35
1819 1943 5.241949 ACTCTGTAAGGCGATCTATGTAAGG 59.758 44.000 0.00 0.00 0.00 2.69
1820 1944 6.320494 ACTCTGTAAGGCGATCTATGTAAG 57.680 41.667 0.00 0.00 0.00 2.34
1821 1945 7.501559 ACTTACTCTGTAAGGCGATCTATGTAA 59.498 37.037 18.05 0.00 0.00 2.41
1822 1946 6.996879 ACTTACTCTGTAAGGCGATCTATGTA 59.003 38.462 18.05 0.00 0.00 2.29
1823 1947 5.828859 ACTTACTCTGTAAGGCGATCTATGT 59.171 40.000 18.05 0.00 0.00 2.29
1824 1948 6.320494 ACTTACTCTGTAAGGCGATCTATG 57.680 41.667 18.05 0.00 0.00 2.23
1825 1949 6.996879 TGTACTTACTCTGTAAGGCGATCTAT 59.003 38.462 18.05 1.92 0.00 1.98
1826 1950 6.351711 TGTACTTACTCTGTAAGGCGATCTA 58.648 40.000 18.05 2.28 0.00 1.98
1827 1951 5.191426 TGTACTTACTCTGTAAGGCGATCT 58.809 41.667 18.05 3.05 0.00 2.75
1828 1952 5.496133 TGTACTTACTCTGTAAGGCGATC 57.504 43.478 18.05 7.22 0.00 3.69
1829 1953 5.418209 ACTTGTACTTACTCTGTAAGGCGAT 59.582 40.000 18.05 3.90 0.00 4.58
1830 1954 4.763793 ACTTGTACTTACTCTGTAAGGCGA 59.236 41.667 18.05 10.95 0.00 5.54
1831 1955 5.056894 ACTTGTACTTACTCTGTAAGGCG 57.943 43.478 18.05 7.07 0.00 5.52
1832 1956 6.147328 CCAAACTTGTACTTACTCTGTAAGGC 59.853 42.308 18.05 12.18 0.00 4.35
1833 1957 6.649557 CCCAAACTTGTACTTACTCTGTAAGG 59.350 42.308 18.05 6.01 0.00 2.69
1834 1958 6.649557 CCCCAAACTTGTACTTACTCTGTAAG 59.350 42.308 13.85 13.85 0.00 2.34
1835 1959 6.527423 CCCCAAACTTGTACTTACTCTGTAA 58.473 40.000 0.00 0.00 0.00 2.41
1836 1960 5.511888 GCCCCAAACTTGTACTTACTCTGTA 60.512 44.000 0.00 0.00 0.00 2.74
1837 1961 4.745783 GCCCCAAACTTGTACTTACTCTGT 60.746 45.833 0.00 0.00 0.00 3.41
1838 1962 3.751698 GCCCCAAACTTGTACTTACTCTG 59.248 47.826 0.00 0.00 0.00 3.35
1839 1963 3.651423 AGCCCCAAACTTGTACTTACTCT 59.349 43.478 0.00 0.00 0.00 3.24
1840 1964 3.751698 CAGCCCCAAACTTGTACTTACTC 59.248 47.826 0.00 0.00 0.00 2.59
1841 1965 3.137728 ACAGCCCCAAACTTGTACTTACT 59.862 43.478 0.00 0.00 0.00 2.24
1842 1966 3.483421 ACAGCCCCAAACTTGTACTTAC 58.517 45.455 0.00 0.00 0.00 2.34
1843 1967 3.868619 ACAGCCCCAAACTTGTACTTA 57.131 42.857 0.00 0.00 0.00 2.24
1844 1968 2.748209 ACAGCCCCAAACTTGTACTT 57.252 45.000 0.00 0.00 0.00 2.24
1845 1969 2.693074 CAAACAGCCCCAAACTTGTACT 59.307 45.455 0.00 0.00 0.00 2.73
1846 1970 2.223947 CCAAACAGCCCCAAACTTGTAC 60.224 50.000 0.00 0.00 0.00 2.90
1847 1971 2.035632 CCAAACAGCCCCAAACTTGTA 58.964 47.619 0.00 0.00 0.00 2.41
1848 1972 0.829990 CCAAACAGCCCCAAACTTGT 59.170 50.000 0.00 0.00 0.00 3.16
1849 1973 1.118838 TCCAAACAGCCCCAAACTTG 58.881 50.000 0.00 0.00 0.00 3.16
1850 1974 2.101640 ATCCAAACAGCCCCAAACTT 57.898 45.000 0.00 0.00 0.00 2.66
1853 1977 1.055040 CCAATCCAAACAGCCCCAAA 58.945 50.000 0.00 0.00 0.00 3.28
1856 1980 0.251787 ACTCCAATCCAAACAGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
1875 2000 1.198094 TTTGGATGGGCAGTCGAGGA 61.198 55.000 0.00 0.00 0.00 3.71
1899 2024 2.107950 TGCCCGGTCAATGAACTAAG 57.892 50.000 0.00 0.00 0.00 2.18
1902 2027 1.004745 AGAATGCCCGGTCAATGAACT 59.995 47.619 0.00 0.00 0.00 3.01
1918 2043 8.429641 ACATAATTAGTGACCATTACCGAGAAT 58.570 33.333 0.00 0.00 0.00 2.40
1925 2056 7.678690 GCACACCACATAATTAGTGACCATTAC 60.679 40.741 13.42 0.00 39.30 1.89
1927 2058 5.125417 GCACACCACATAATTAGTGACCATT 59.875 40.000 13.42 0.00 39.30 3.16
1949 2080 1.074405 AGGAACTGAGATGCTTTGGCA 59.926 47.619 0.00 0.00 46.83 4.92
1958 2089 5.094387 TGGGAGAACTAAAGGAACTGAGAT 58.906 41.667 0.00 0.00 40.86 2.75
1989 2463 3.054728 TGTCCTTGACAACTCTCCAACAA 60.055 43.478 0.00 0.00 39.78 2.83
2036 2511 2.769663 ACATCGGAGGTAAACATAGGCA 59.230 45.455 0.00 0.00 0.00 4.75
2038 2513 9.720769 AAAATATACATCGGAGGTAAACATAGG 57.279 33.333 6.60 0.00 0.00 2.57
2042 2517 7.713507 CAGGAAAATATACATCGGAGGTAAACA 59.286 37.037 6.60 0.00 0.00 2.83
2045 2520 7.606135 TCAGGAAAATATACATCGGAGGTAA 57.394 36.000 6.60 0.00 0.00 2.85
2047 2522 6.688073 ATCAGGAAAATATACATCGGAGGT 57.312 37.500 0.00 0.00 0.00 3.85
2048 2523 7.332926 CAGAATCAGGAAAATATACATCGGAGG 59.667 40.741 0.00 0.00 0.00 4.30
2056 2544 7.301054 CGCCATTCAGAATCAGGAAAATATAC 58.699 38.462 4.04 0.00 0.00 1.47
2064 2552 0.543277 AGCGCCATTCAGAATCAGGA 59.457 50.000 2.29 0.00 0.00 3.86
2072 2560 1.344438 TCTATACCCAGCGCCATTCAG 59.656 52.381 2.29 0.00 0.00 3.02
2073 2561 1.419381 TCTATACCCAGCGCCATTCA 58.581 50.000 2.29 0.00 0.00 2.57
2077 2565 1.276138 CATCATCTATACCCAGCGCCA 59.724 52.381 2.29 0.00 0.00 5.69
2078 2566 1.406069 CCATCATCTATACCCAGCGCC 60.406 57.143 2.29 0.00 0.00 6.53
2085 2573 4.955811 TGTGTCACCCATCATCTATACC 57.044 45.455 0.00 0.00 0.00 2.73
2087 2575 5.154418 TCCATGTGTCACCCATCATCTATA 58.846 41.667 0.00 0.00 0.00 1.31
2089 2577 3.383223 TCCATGTGTCACCCATCATCTA 58.617 45.455 0.00 0.00 0.00 1.98
2090 2578 2.199208 TCCATGTGTCACCCATCATCT 58.801 47.619 0.00 0.00 0.00 2.90
2091 2579 2.715749 TCCATGTGTCACCCATCATC 57.284 50.000 0.00 0.00 0.00 2.92
2092 2580 2.423803 CCATCCATGTGTCACCCATCAT 60.424 50.000 0.00 0.00 0.00 2.45
2093 2581 1.064537 CCATCCATGTGTCACCCATCA 60.065 52.381 0.00 0.00 0.00 3.07
2094 2582 1.212688 TCCATCCATGTGTCACCCATC 59.787 52.381 0.00 0.00 0.00 3.51
2095 2583 1.213678 CTCCATCCATGTGTCACCCAT 59.786 52.381 0.00 0.00 0.00 4.00
2136 2624 3.468770 CGATCTCTCCTCTAGGAACGAA 58.531 50.000 0.00 0.00 44.91 3.85
2137 2625 2.224329 CCGATCTCTCCTCTAGGAACGA 60.224 54.545 0.00 0.27 44.91 3.85
2142 2630 0.610785 GGCCCGATCTCTCCTCTAGG 60.611 65.000 0.00 0.00 0.00 3.02
2190 2680 2.035442 GGGGCAGAAAGACGCTGAC 61.035 63.158 0.00 0.00 40.74 3.51
2191 2681 1.841302 ATGGGGCAGAAAGACGCTGA 61.841 55.000 0.00 0.00 39.39 4.26
2243 2733 0.494095 AGGAGTTGGAGTCTTCCCCT 59.506 55.000 0.00 0.00 43.33 4.79
2246 2736 4.090819 AGTTCTAGGAGTTGGAGTCTTCC 58.909 47.826 0.00 0.00 44.31 3.46
2249 2739 4.540906 TCCTAGTTCTAGGAGTTGGAGTCT 59.459 45.833 20.67 0.00 41.08 3.24
2251 2741 4.949966 TCCTAGTTCTAGGAGTTGGAGT 57.050 45.455 20.67 0.00 41.08 3.85
2262 2752 4.721776 AGCATGGGTGAATTCCTAGTTCTA 59.278 41.667 2.27 0.00 0.00 2.10
2266 2756 3.624777 CAAGCATGGGTGAATTCCTAGT 58.375 45.455 2.27 0.00 0.00 2.57
2272 2762 0.899720 CAGGCAAGCATGGGTGAATT 59.100 50.000 0.00 0.00 0.00 2.17
2273 2763 0.974010 CCAGGCAAGCATGGGTGAAT 60.974 55.000 17.37 0.00 43.41 2.57
2284 2774 2.555757 CCTTTCTTTCTCACCAGGCAAG 59.444 50.000 0.00 0.00 0.00 4.01
2299 2789 4.327680 GAATGTGCACCTCTAACCTTTCT 58.672 43.478 15.69 0.00 0.00 2.52
2321 2814 2.316119 GGCAACTACTTCAGCAAACG 57.684 50.000 0.00 0.00 0.00 3.60
2351 2844 5.598005 CCACAGAGAAGAAGAGTAGGATGAT 59.402 44.000 0.00 0.00 0.00 2.45
2354 2847 3.704061 GCCACAGAGAAGAAGAGTAGGAT 59.296 47.826 0.00 0.00 0.00 3.24
2362 2855 1.446907 AATGCGCCACAGAGAAGAAG 58.553 50.000 4.18 0.00 0.00 2.85
2372 2865 3.574614 ACTCAAATAACAAATGCGCCAC 58.425 40.909 4.18 0.00 0.00 5.01
2377 2870 6.252228 GCAGCTAGAACTCAAATAACAAATGC 59.748 38.462 0.00 0.00 0.00 3.56
2391 2884 1.206849 GCCTCTCTTGCAGCTAGAACT 59.793 52.381 7.99 0.00 0.00 3.01
2417 2910 4.271049 CGCTCGATATCAAAACCATCTTGT 59.729 41.667 3.12 0.00 0.00 3.16
2431 2924 0.962489 CCTCCCTTGTCGCTCGATAT 59.038 55.000 0.00 0.00 0.00 1.63
2433 2926 1.668101 GACCTCCCTTGTCGCTCGAT 61.668 60.000 0.00 0.00 0.00 3.59
2435 2928 2.182030 GACCTCCCTTGTCGCTCG 59.818 66.667 0.00 0.00 0.00 5.03
2437 2930 1.228894 TCAGACCTCCCTTGTCGCT 60.229 57.895 0.00 0.00 37.80 4.93
2444 2937 2.463047 GACCATAGTCAGACCTCCCT 57.537 55.000 0.00 0.00 42.99 4.20
2469 2974 4.765273 TCATCGTGTTGCCACATATAGTT 58.235 39.130 0.00 0.00 41.93 2.24
2485 2990 3.053693 TCCAAATTCCCCAATCTCATCGT 60.054 43.478 0.00 0.00 0.00 3.73
2526 3032 1.694150 GGCACCACTGGATCTAGCATA 59.306 52.381 5.91 0.00 0.00 3.14
2528 3034 0.909133 TGGCACCACTGGATCTAGCA 60.909 55.000 5.91 0.00 0.00 3.49
2529 3035 0.253044 TTGGCACCACTGGATCTAGC 59.747 55.000 5.91 0.00 0.00 3.42
2531 3037 0.253044 GCTTGGCACCACTGGATCTA 59.747 55.000 0.71 0.00 0.00 1.98
2558 3064 2.223112 GCTGATTGTTGGCGTCTACATG 60.223 50.000 4.88 0.00 0.00 3.21
2563 3069 1.675641 GGGCTGATTGTTGGCGTCT 60.676 57.895 0.00 0.00 0.00 4.18
2565 3071 2.676471 GGGGCTGATTGTTGGCGT 60.676 61.111 0.00 0.00 0.00 5.68
2627 3135 1.841302 ATGGCATGACCCACACTCGT 61.841 55.000 0.00 0.00 37.79 4.18
2670 3178 0.252761 TCGAGGATTTGCCAGCATCA 59.747 50.000 0.00 0.00 40.02 3.07
2680 3188 3.708210 TCGTGCCCTCGAGGATTT 58.292 55.556 33.39 0.00 38.24 2.17
2688 3196 3.838271 TCGGATGCTCGTGCCCTC 61.838 66.667 7.05 3.96 38.71 4.30
2705 3213 3.266772 TCATGTCTAAGATTTGCAGGGGT 59.733 43.478 0.00 0.00 0.00 4.95
2709 3218 9.897744 TTTAAGTTTCATGTCTAAGATTTGCAG 57.102 29.630 0.00 0.00 0.00 4.41
2710 3219 9.677567 GTTTAAGTTTCATGTCTAAGATTTGCA 57.322 29.630 0.00 0.00 0.00 4.08
2711 3220 9.677567 TGTTTAAGTTTCATGTCTAAGATTTGC 57.322 29.630 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.