Multiple sequence alignment - TraesCS7B01G341600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G341600 chr7B 100.000 1608 0 0 905 2512 596606320 596607927 0.000000e+00 2970
1 TraesCS7B01G341600 chr7B 100.000 566 0 0 1 566 596605416 596605981 0.000000e+00 1046
2 TraesCS7B01G341600 chr7A 87.570 1070 74 21 905 1932 637297866 637298918 0.000000e+00 1184
3 TraesCS7B01G341600 chr7A 87.669 519 51 11 1001 1514 34033344 34032834 2.150000e-165 592
4 TraesCS7B01G341600 chr7A 84.864 588 45 16 1922 2507 637299196 637299741 1.020000e-153 553
5 TraesCS7B01G341600 chr7A 86.269 335 33 3 2038 2372 637303877 637304198 3.980000e-93 351
6 TraesCS7B01G341600 chr7A 86.269 335 33 3 2038 2372 637308238 637308559 3.980000e-93 351
7 TraesCS7B01G341600 chr7A 86.269 335 33 3 2038 2372 637313372 637313693 3.980000e-93 351
8 TraesCS7B01G341600 chr7A 92.754 69 5 0 1931 1999 637303808 637303876 1.590000e-17 100
9 TraesCS7B01G341600 chr7A 92.754 69 5 0 1931 1999 637308169 637308237 1.590000e-17 100
10 TraesCS7B01G341600 chr7A 92.754 69 5 0 1931 1999 637313303 637313371 1.590000e-17 100
11 TraesCS7B01G341600 chr7D 87.818 903 69 22 905 1801 551737690 551738557 0.000000e+00 1020
12 TraesCS7B01G341600 chr7D 88.193 559 48 15 999 1546 33217062 33216511 0.000000e+00 651
13 TraesCS7B01G341600 chr7D 80.270 963 108 36 1556 2507 551913530 551914421 0.000000e+00 651
14 TraesCS7B01G341600 chr7D 87.947 531 42 18 999 1514 33471337 33470814 7.680000e-170 606
15 TraesCS7B01G341600 chr7D 94.412 340 19 0 1172 1511 108085665 108086004 7.960000e-145 523
16 TraesCS7B01G341600 chr7D 81.643 414 44 11 1844 2253 551738661 551739046 5.220000e-82 315
17 TraesCS7B01G341600 chr7D 93.478 184 8 3 2174 2353 551739038 551739221 1.150000e-68 270
18 TraesCS7B01G341600 chrUn 86.101 554 59 16 999 1546 81832852 81833393 4.660000e-162 580
19 TraesCS7B01G341600 chrUn 86.269 335 33 3 2038 2372 303492085 303492406 3.980000e-93 351
20 TraesCS7B01G341600 chrUn 92.754 69 5 0 1931 1999 303492016 303492084 1.590000e-17 100
21 TraesCS7B01G341600 chr4A 86.355 535 50 16 999 1514 692079297 692079827 1.690000e-156 562
22 TraesCS7B01G341600 chr4A 94.828 348 18 0 1170 1517 692359018 692359365 6.110000e-151 544
23 TraesCS7B01G341600 chr4A 94.034 352 21 0 1170 1521 693596760 693596409 3.680000e-148 534
24 TraesCS7B01G341600 chr4A 86.592 179 17 5 2175 2352 713037470 713037642 9.170000e-45 191
25 TraesCS7B01G341600 chr4A 93.258 89 6 0 993 1081 692358843 692358931 5.640000e-27 132
26 TraesCS7B01G341600 chr6B 86.180 521 55 12 1001 1512 33011592 33012104 4.720000e-152 547


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G341600 chr7B 596605416 596607927 2511 False 2008.0 2970 100.000000 1 2512 2 chr7B.!!$F1 2511
1 TraesCS7B01G341600 chr7A 637297866 637299741 1875 False 868.5 1184 86.217000 905 2507 2 chr7A.!!$F1 1602
2 TraesCS7B01G341600 chr7A 34032834 34033344 510 True 592.0 592 87.669000 1001 1514 1 chr7A.!!$R1 513
3 TraesCS7B01G341600 chr7A 637303808 637308559 4751 False 225.5 351 89.511500 1931 2372 4 chr7A.!!$F2 441
4 TraesCS7B01G341600 chr7D 33216511 33217062 551 True 651.0 651 88.193000 999 1546 1 chr7D.!!$R1 547
5 TraesCS7B01G341600 chr7D 551913530 551914421 891 False 651.0 651 80.270000 1556 2507 1 chr7D.!!$F2 951
6 TraesCS7B01G341600 chr7D 33470814 33471337 523 True 606.0 606 87.947000 999 1514 1 chr7D.!!$R2 515
7 TraesCS7B01G341600 chr7D 551737690 551739221 1531 False 535.0 1020 87.646333 905 2353 3 chr7D.!!$F3 1448
8 TraesCS7B01G341600 chrUn 81832852 81833393 541 False 580.0 580 86.101000 999 1546 1 chrUn.!!$F1 547
9 TraesCS7B01G341600 chr4A 692079297 692079827 530 False 562.0 562 86.355000 999 1514 1 chr4A.!!$F1 515
10 TraesCS7B01G341600 chr4A 692358843 692359365 522 False 338.0 544 94.043000 993 1517 2 chr4A.!!$F3 524
11 TraesCS7B01G341600 chr6B 33011592 33012104 512 False 547.0 547 86.180000 1001 1512 1 chr6B.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1000 0.110192 GAAGCCAAGTTTCGAAGCCG 60.11 55.0 8.51 0.3 37.07 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2557 1.203052 CAACCAAGCAGCCGAAATGAT 59.797 47.619 0.0 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.664211 TGTACTGAACATGTACAATGTGTAAA 57.336 30.769 0.00 0.00 44.67 2.01
61 62 9.110502 TGTACTGAACATGTACAATGTGTAAAA 57.889 29.630 0.00 0.00 44.67 1.52
62 63 9.938670 GTACTGAACATGTACAATGTGTAAAAA 57.061 29.630 0.00 0.00 39.79 1.94
146 147 5.783100 AAATAATGTTACCGGTGTGTACG 57.217 39.130 19.93 0.00 0.00 3.67
147 148 2.818130 AATGTTACCGGTGTGTACGT 57.182 45.000 19.93 8.53 0.00 3.57
148 149 3.932545 AATGTTACCGGTGTGTACGTA 57.067 42.857 19.93 0.00 0.00 3.57
149 150 3.932545 ATGTTACCGGTGTGTACGTAA 57.067 42.857 19.93 0.00 0.00 3.18
150 151 3.932545 TGTTACCGGTGTGTACGTAAT 57.067 42.857 19.93 0.00 0.00 1.89
151 152 5.574891 ATGTTACCGGTGTGTACGTAATA 57.425 39.130 19.93 0.00 0.00 0.98
152 153 5.574891 TGTTACCGGTGTGTACGTAATAT 57.425 39.130 19.93 0.00 0.00 1.28
153 154 5.577835 TGTTACCGGTGTGTACGTAATATC 58.422 41.667 19.93 0.00 0.00 1.63
154 155 5.356751 TGTTACCGGTGTGTACGTAATATCT 59.643 40.000 19.93 0.00 0.00 1.98
155 156 6.540551 TGTTACCGGTGTGTACGTAATATCTA 59.459 38.462 19.93 0.00 0.00 1.98
156 157 5.424121 ACCGGTGTGTACGTAATATCTAC 57.576 43.478 6.12 0.00 0.00 2.59
157 158 4.881273 ACCGGTGTGTACGTAATATCTACA 59.119 41.667 6.12 0.00 0.00 2.74
158 159 5.356751 ACCGGTGTGTACGTAATATCTACAA 59.643 40.000 6.12 0.00 0.00 2.41
159 160 6.127758 ACCGGTGTGTACGTAATATCTACAAA 60.128 38.462 6.12 0.00 0.00 2.83
160 161 6.919662 CCGGTGTGTACGTAATATCTACAAAT 59.080 38.462 0.00 0.00 0.00 2.32
161 162 7.096353 CCGGTGTGTACGTAATATCTACAAATG 60.096 40.741 0.00 0.00 0.00 2.32
162 163 7.433131 CGGTGTGTACGTAATATCTACAAATGT 59.567 37.037 0.00 0.00 0.00 2.71
163 164 8.537223 GGTGTGTACGTAATATCTACAAATGTG 58.463 37.037 0.00 0.00 0.00 3.21
164 165 9.079833 GTGTGTACGTAATATCTACAAATGTGT 57.920 33.333 0.00 0.00 42.09 3.72
177 178 9.855021 ATCTACAAATGTGTATTAAAAACAGGC 57.145 29.630 0.00 0.00 39.51 4.85
178 179 8.851145 TCTACAAATGTGTATTAAAAACAGGCA 58.149 29.630 0.00 0.00 39.51 4.75
179 180 9.638239 CTACAAATGTGTATTAAAAACAGGCAT 57.362 29.630 0.00 0.00 39.51 4.40
180 181 8.309163 ACAAATGTGTATTAAAAACAGGCATG 57.691 30.769 0.00 0.00 35.72 4.06
181 182 7.930865 ACAAATGTGTATTAAAAACAGGCATGT 59.069 29.630 0.00 0.00 37.47 3.21
182 183 7.887996 AATGTGTATTAAAAACAGGCATGTG 57.112 32.000 4.03 0.00 40.39 3.21
183 184 6.398234 TGTGTATTAAAAACAGGCATGTGT 57.602 33.333 4.03 0.00 40.39 3.72
184 185 6.442952 TGTGTATTAAAAACAGGCATGTGTC 58.557 36.000 4.03 0.00 40.39 3.67
185 186 5.567534 GTGTATTAAAAACAGGCATGTGTCG 59.432 40.000 4.03 0.00 40.39 4.35
186 187 5.470437 TGTATTAAAAACAGGCATGTGTCGA 59.530 36.000 4.03 0.00 40.39 4.20
187 188 4.902443 TTAAAAACAGGCATGTGTCGAA 57.098 36.364 4.03 0.00 40.39 3.71
188 189 5.446143 TTAAAAACAGGCATGTGTCGAAT 57.554 34.783 4.03 0.00 40.39 3.34
189 190 6.561737 TTAAAAACAGGCATGTGTCGAATA 57.438 33.333 4.03 0.00 40.39 1.75
190 191 5.446143 AAAAACAGGCATGTGTCGAATAA 57.554 34.783 4.03 0.00 40.39 1.40
191 192 5.446143 AAAACAGGCATGTGTCGAATAAA 57.554 34.783 4.03 0.00 40.39 1.40
192 193 5.446143 AAACAGGCATGTGTCGAATAAAA 57.554 34.783 4.03 0.00 40.39 1.52
193 194 5.446143 AACAGGCATGTGTCGAATAAAAA 57.554 34.783 4.03 0.00 40.39 1.94
194 195 5.643379 ACAGGCATGTGTCGAATAAAAAT 57.357 34.783 1.71 0.00 38.57 1.82
195 196 6.751514 ACAGGCATGTGTCGAATAAAAATA 57.248 33.333 1.71 0.00 38.57 1.40
196 197 7.151999 ACAGGCATGTGTCGAATAAAAATAA 57.848 32.000 1.71 0.00 38.57 1.40
197 198 7.598278 ACAGGCATGTGTCGAATAAAAATAAA 58.402 30.769 1.71 0.00 38.57 1.40
198 199 7.754924 ACAGGCATGTGTCGAATAAAAATAAAG 59.245 33.333 1.71 0.00 38.57 1.85
199 200 7.220683 CAGGCATGTGTCGAATAAAAATAAAGG 59.779 37.037 0.00 0.00 0.00 3.11
200 201 6.475402 GGCATGTGTCGAATAAAAATAAAGGG 59.525 38.462 0.00 0.00 0.00 3.95
201 202 7.254852 GCATGTGTCGAATAAAAATAAAGGGA 58.745 34.615 0.00 0.00 0.00 4.20
202 203 7.757624 GCATGTGTCGAATAAAAATAAAGGGAA 59.242 33.333 0.00 0.00 0.00 3.97
203 204 9.632807 CATGTGTCGAATAAAAATAAAGGGAAA 57.367 29.630 0.00 0.00 0.00 3.13
204 205 9.634163 ATGTGTCGAATAAAAATAAAGGGAAAC 57.366 29.630 0.00 0.00 0.00 2.78
205 206 8.630917 TGTGTCGAATAAAAATAAAGGGAAACA 58.369 29.630 0.00 0.00 0.00 2.83
206 207 9.465985 GTGTCGAATAAAAATAAAGGGAAACAA 57.534 29.630 0.00 0.00 0.00 2.83
215 216 9.541143 AAAAATAAAGGGAAACAATGTACACTG 57.459 29.630 2.09 2.09 0.00 3.66
216 217 8.472007 AAATAAAGGGAAACAATGTACACTGA 57.528 30.769 11.94 0.00 0.00 3.41
217 218 7.687941 ATAAAGGGAAACAATGTACACTGAG 57.312 36.000 11.94 0.00 0.00 3.35
218 219 4.021102 AGGGAAACAATGTACACTGAGG 57.979 45.455 11.94 0.00 0.00 3.86
219 220 3.650942 AGGGAAACAATGTACACTGAGGA 59.349 43.478 11.94 0.00 0.00 3.71
220 221 4.104102 AGGGAAACAATGTACACTGAGGAA 59.896 41.667 11.94 0.00 0.00 3.36
221 222 4.825085 GGGAAACAATGTACACTGAGGAAA 59.175 41.667 11.94 0.00 0.00 3.13
222 223 5.476945 GGGAAACAATGTACACTGAGGAAAT 59.523 40.000 11.94 0.00 0.00 2.17
223 224 6.381801 GGAAACAATGTACACTGAGGAAATG 58.618 40.000 11.94 0.00 0.00 2.32
224 225 6.206634 GGAAACAATGTACACTGAGGAAATGA 59.793 38.462 11.94 0.00 0.00 2.57
225 226 7.255451 GGAAACAATGTACACTGAGGAAATGAA 60.255 37.037 11.94 0.00 0.00 2.57
226 227 7.581213 AACAATGTACACTGAGGAAATGAAA 57.419 32.000 11.94 0.00 0.00 2.69
227 228 6.970484 ACAATGTACACTGAGGAAATGAAAC 58.030 36.000 11.94 0.00 0.00 2.78
228 229 6.545666 ACAATGTACACTGAGGAAATGAAACA 59.454 34.615 11.94 0.00 0.00 2.83
229 230 6.808008 ATGTACACTGAGGAAATGAAACAG 57.192 37.500 0.00 0.00 35.14 3.16
230 231 5.924356 TGTACACTGAGGAAATGAAACAGA 58.076 37.500 0.00 0.00 33.53 3.41
231 232 5.991606 TGTACACTGAGGAAATGAAACAGAG 59.008 40.000 0.00 0.00 33.53 3.35
232 233 5.296151 ACACTGAGGAAATGAAACAGAGA 57.704 39.130 0.00 0.00 33.53 3.10
233 234 5.684704 ACACTGAGGAAATGAAACAGAGAA 58.315 37.500 0.00 0.00 33.53 2.87
234 235 6.122277 ACACTGAGGAAATGAAACAGAGAAA 58.878 36.000 0.00 0.00 33.53 2.52
235 236 6.038714 ACACTGAGGAAATGAAACAGAGAAAC 59.961 38.462 0.00 0.00 33.53 2.78
236 237 6.038603 CACTGAGGAAATGAAACAGAGAAACA 59.961 38.462 0.00 0.00 33.53 2.83
237 238 6.603201 ACTGAGGAAATGAAACAGAGAAACAA 59.397 34.615 0.00 0.00 33.53 2.83
238 239 7.122650 ACTGAGGAAATGAAACAGAGAAACAAA 59.877 33.333 0.00 0.00 33.53 2.83
239 240 7.835822 TGAGGAAATGAAACAGAGAAACAAAA 58.164 30.769 0.00 0.00 0.00 2.44
240 241 7.975616 TGAGGAAATGAAACAGAGAAACAAAAG 59.024 33.333 0.00 0.00 0.00 2.27
241 242 8.066612 AGGAAATGAAACAGAGAAACAAAAGA 57.933 30.769 0.00 0.00 0.00 2.52
242 243 8.531146 AGGAAATGAAACAGAGAAACAAAAGAA 58.469 29.630 0.00 0.00 0.00 2.52
243 244 9.150348 GGAAATGAAACAGAGAAACAAAAGAAA 57.850 29.630 0.00 0.00 0.00 2.52
244 245 9.958285 GAAATGAAACAGAGAAACAAAAGAAAC 57.042 29.630 0.00 0.00 0.00 2.78
245 246 9.487790 AAATGAAACAGAGAAACAAAAGAAACA 57.512 25.926 0.00 0.00 0.00 2.83
246 247 7.867445 TGAAACAGAGAAACAAAAGAAACAC 57.133 32.000 0.00 0.00 0.00 3.32
247 248 6.866248 TGAAACAGAGAAACAAAAGAAACACC 59.134 34.615 0.00 0.00 0.00 4.16
248 249 6.590234 AACAGAGAAACAAAAGAAACACCT 57.410 33.333 0.00 0.00 0.00 4.00
249 250 6.590234 ACAGAGAAACAAAAGAAACACCTT 57.410 33.333 0.00 0.00 0.00 3.50
250 251 7.696992 ACAGAGAAACAAAAGAAACACCTTA 57.303 32.000 0.00 0.00 0.00 2.69
251 252 7.762382 ACAGAGAAACAAAAGAAACACCTTAG 58.238 34.615 0.00 0.00 0.00 2.18
252 253 7.610305 ACAGAGAAACAAAAGAAACACCTTAGA 59.390 33.333 0.00 0.00 0.00 2.10
253 254 8.458843 CAGAGAAACAAAAGAAACACCTTAGAA 58.541 33.333 0.00 0.00 0.00 2.10
254 255 9.020731 AGAGAAACAAAAGAAACACCTTAGAAA 57.979 29.630 0.00 0.00 0.00 2.52
255 256 8.981724 AGAAACAAAAGAAACACCTTAGAAAC 57.018 30.769 0.00 0.00 0.00 2.78
256 257 8.581578 AGAAACAAAAGAAACACCTTAGAAACA 58.418 29.630 0.00 0.00 0.00 2.83
257 258 9.198837 GAAACAAAAGAAACACCTTAGAAACAA 57.801 29.630 0.00 0.00 0.00 2.83
258 259 9.549078 AAACAAAAGAAACACCTTAGAAACAAA 57.451 25.926 0.00 0.00 0.00 2.83
259 260 8.757164 ACAAAAGAAACACCTTAGAAACAAAG 57.243 30.769 0.00 0.00 0.00 2.77
260 261 8.581578 ACAAAAGAAACACCTTAGAAACAAAGA 58.418 29.630 0.00 0.00 0.00 2.52
261 262 9.418045 CAAAAGAAACACCTTAGAAACAAAGAA 57.582 29.630 0.00 0.00 0.00 2.52
262 263 9.990360 AAAAGAAACACCTTAGAAACAAAGAAA 57.010 25.926 0.00 0.00 0.00 2.52
263 264 9.990360 AAAGAAACACCTTAGAAACAAAGAAAA 57.010 25.926 0.00 0.00 0.00 2.29
264 265 9.990360 AAGAAACACCTTAGAAACAAAGAAAAA 57.010 25.926 0.00 0.00 0.00 1.94
267 268 9.936759 AAACACCTTAGAAACAAAGAAAAATGA 57.063 25.926 0.00 0.00 0.00 2.57
268 269 9.936759 AACACCTTAGAAACAAAGAAAAATGAA 57.063 25.926 0.00 0.00 0.00 2.57
269 270 9.936759 ACACCTTAGAAACAAAGAAAAATGAAA 57.063 25.926 0.00 0.00 0.00 2.69
290 291 5.506730 AAAAACCCAAAGGAAACCTTGAA 57.493 34.783 3.73 0.00 43.92 2.69
291 292 5.506730 AAAACCCAAAGGAAACCTTGAAA 57.493 34.783 3.73 0.00 43.92 2.69
292 293 5.506730 AAACCCAAAGGAAACCTTGAAAA 57.493 34.783 3.73 0.00 43.92 2.29
293 294 4.481368 ACCCAAAGGAAACCTTGAAAAC 57.519 40.909 3.73 0.00 43.92 2.43
294 295 3.199071 ACCCAAAGGAAACCTTGAAAACC 59.801 43.478 3.73 0.00 43.92 3.27
295 296 3.433031 CCCAAAGGAAACCTTGAAAACCC 60.433 47.826 3.73 0.00 43.92 4.11
296 297 3.198853 CCAAAGGAAACCTTGAAAACCCA 59.801 43.478 3.73 0.00 43.92 4.51
297 298 4.141505 CCAAAGGAAACCTTGAAAACCCAT 60.142 41.667 3.73 0.00 43.92 4.00
298 299 4.687901 AAGGAAACCTTGAAAACCCATG 57.312 40.909 2.04 0.00 42.96 3.66
299 300 3.922375 AGGAAACCTTGAAAACCCATGA 58.078 40.909 0.00 0.00 0.00 3.07
300 301 4.492646 AGGAAACCTTGAAAACCCATGAT 58.507 39.130 0.00 0.00 0.00 2.45
301 302 5.650283 AGGAAACCTTGAAAACCCATGATA 58.350 37.500 0.00 0.00 0.00 2.15
302 303 6.081356 AGGAAACCTTGAAAACCCATGATAA 58.919 36.000 0.00 0.00 0.00 1.75
303 304 6.556874 AGGAAACCTTGAAAACCCATGATAAA 59.443 34.615 0.00 0.00 0.00 1.40
304 305 7.237471 AGGAAACCTTGAAAACCCATGATAAAT 59.763 33.333 0.00 0.00 0.00 1.40
305 306 7.882791 GGAAACCTTGAAAACCCATGATAAATT 59.117 33.333 0.00 0.00 0.00 1.82
306 307 9.283768 GAAACCTTGAAAACCCATGATAAATTT 57.716 29.630 0.00 0.00 0.00 1.82
309 310 9.942850 ACCTTGAAAACCCATGATAAATTTAAG 57.057 29.630 1.21 0.00 0.00 1.85
310 311 9.942850 CCTTGAAAACCCATGATAAATTTAAGT 57.057 29.630 1.21 0.00 0.00 2.24
340 341 8.992835 AAAGAAATCATAGACAAATTTGGAGC 57.007 30.769 21.74 10.78 0.00 4.70
341 342 7.951347 AGAAATCATAGACAAATTTGGAGCT 57.049 32.000 21.74 16.66 0.00 4.09
342 343 7.994194 AGAAATCATAGACAAATTTGGAGCTC 58.006 34.615 21.74 4.71 0.00 4.09
343 344 7.833183 AGAAATCATAGACAAATTTGGAGCTCT 59.167 33.333 21.74 16.41 0.00 4.09
344 345 6.939132 ATCATAGACAAATTTGGAGCTCTG 57.061 37.500 21.74 16.29 0.00 3.35
345 346 6.053632 TCATAGACAAATTTGGAGCTCTGA 57.946 37.500 21.74 17.89 0.00 3.27
346 347 6.475504 TCATAGACAAATTTGGAGCTCTGAA 58.524 36.000 21.74 9.12 0.00 3.02
347 348 6.596888 TCATAGACAAATTTGGAGCTCTGAAG 59.403 38.462 21.74 9.61 0.00 3.02
348 349 4.723309 AGACAAATTTGGAGCTCTGAAGT 58.277 39.130 21.74 5.26 0.00 3.01
349 350 5.136105 AGACAAATTTGGAGCTCTGAAGTT 58.864 37.500 21.74 11.01 0.00 2.66
350 351 6.299141 AGACAAATTTGGAGCTCTGAAGTTA 58.701 36.000 21.74 0.00 0.00 2.24
351 352 6.772716 AGACAAATTTGGAGCTCTGAAGTTAA 59.227 34.615 21.74 0.00 0.00 2.01
352 353 6.739112 ACAAATTTGGAGCTCTGAAGTTAAC 58.261 36.000 21.74 0.00 0.00 2.01
353 354 5.966742 AATTTGGAGCTCTGAAGTTAACC 57.033 39.130 14.64 0.00 0.00 2.85
354 355 4.706842 TTTGGAGCTCTGAAGTTAACCT 57.293 40.909 14.64 0.00 0.00 3.50
355 356 3.685139 TGGAGCTCTGAAGTTAACCTG 57.315 47.619 14.64 0.00 0.00 4.00
356 357 3.239449 TGGAGCTCTGAAGTTAACCTGA 58.761 45.455 14.64 0.00 0.00 3.86
357 358 3.006967 TGGAGCTCTGAAGTTAACCTGAC 59.993 47.826 14.64 0.00 0.00 3.51
358 359 3.591023 GAGCTCTGAAGTTAACCTGACC 58.409 50.000 6.43 0.00 0.00 4.02
359 360 3.243724 AGCTCTGAAGTTAACCTGACCT 58.756 45.455 0.88 0.00 0.00 3.85
360 361 3.259625 AGCTCTGAAGTTAACCTGACCTC 59.740 47.826 0.88 0.00 0.00 3.85
361 362 3.006967 GCTCTGAAGTTAACCTGACCTCA 59.993 47.826 0.88 0.00 0.00 3.86
362 363 4.503296 GCTCTGAAGTTAACCTGACCTCAA 60.503 45.833 0.88 0.00 0.00 3.02
363 364 5.611374 CTCTGAAGTTAACCTGACCTCAAA 58.389 41.667 0.88 0.00 0.00 2.69
364 365 5.996644 TCTGAAGTTAACCTGACCTCAAAA 58.003 37.500 0.88 0.00 0.00 2.44
365 366 6.419791 TCTGAAGTTAACCTGACCTCAAAAA 58.580 36.000 0.88 0.00 0.00 1.94
366 367 7.060421 TCTGAAGTTAACCTGACCTCAAAAAT 58.940 34.615 0.88 0.00 0.00 1.82
367 368 7.013274 TCTGAAGTTAACCTGACCTCAAAAATG 59.987 37.037 0.88 0.00 0.00 2.32
368 369 6.040391 TGAAGTTAACCTGACCTCAAAAATGG 59.960 38.462 0.88 0.00 0.00 3.16
369 370 4.280929 AGTTAACCTGACCTCAAAAATGGC 59.719 41.667 0.88 0.00 0.00 4.40
370 371 1.632589 ACCTGACCTCAAAAATGGCC 58.367 50.000 0.00 0.00 0.00 5.36
371 372 0.897621 CCTGACCTCAAAAATGGCCC 59.102 55.000 0.00 0.00 0.00 5.80
372 373 1.631405 CTGACCTCAAAAATGGCCCA 58.369 50.000 0.00 0.00 0.00 5.36
373 374 1.273327 CTGACCTCAAAAATGGCCCAC 59.727 52.381 0.00 0.00 0.00 4.61
374 375 0.243636 GACCTCAAAAATGGCCCACG 59.756 55.000 0.00 0.00 0.00 4.94
375 376 1.184970 ACCTCAAAAATGGCCCACGG 61.185 55.000 0.00 0.00 0.00 4.94
387 388 4.235762 CCACGGCCCGGATACCAG 62.236 72.222 8.57 0.84 0.00 4.00
388 389 4.910585 CACGGCCCGGATACCAGC 62.911 72.222 8.57 0.00 0.00 4.85
392 393 4.564110 GCCCGGATACCAGCCCAC 62.564 72.222 0.73 0.00 0.00 4.61
393 394 3.087253 CCCGGATACCAGCCCACA 61.087 66.667 0.73 0.00 0.00 4.17
394 395 2.675242 CCCGGATACCAGCCCACAA 61.675 63.158 0.73 0.00 0.00 3.33
395 396 1.531748 CCGGATACCAGCCCACAAT 59.468 57.895 0.00 0.00 0.00 2.71
396 397 0.762418 CCGGATACCAGCCCACAATA 59.238 55.000 0.00 0.00 0.00 1.90
397 398 1.270839 CCGGATACCAGCCCACAATAG 60.271 57.143 0.00 0.00 0.00 1.73
398 399 1.691976 CGGATACCAGCCCACAATAGA 59.308 52.381 0.00 0.00 0.00 1.98
399 400 2.303022 CGGATACCAGCCCACAATAGAT 59.697 50.000 0.00 0.00 0.00 1.98
400 401 3.513912 CGGATACCAGCCCACAATAGATA 59.486 47.826 0.00 0.00 0.00 1.98
401 402 4.382040 CGGATACCAGCCCACAATAGATAG 60.382 50.000 0.00 0.00 0.00 2.08
402 403 4.080863 GGATACCAGCCCACAATAGATAGG 60.081 50.000 0.00 0.00 0.00 2.57
403 404 3.060479 ACCAGCCCACAATAGATAGGA 57.940 47.619 0.00 0.00 0.00 2.94
404 405 2.706190 ACCAGCCCACAATAGATAGGAC 59.294 50.000 0.00 0.00 0.00 3.85
405 406 2.705658 CCAGCCCACAATAGATAGGACA 59.294 50.000 0.00 0.00 0.00 4.02
406 407 3.244353 CCAGCCCACAATAGATAGGACAG 60.244 52.174 0.00 0.00 0.00 3.51
407 408 2.975489 AGCCCACAATAGATAGGACAGG 59.025 50.000 0.00 0.00 0.00 4.00
408 409 2.706190 GCCCACAATAGATAGGACAGGT 59.294 50.000 0.00 0.00 0.00 4.00
409 410 3.901844 GCCCACAATAGATAGGACAGGTA 59.098 47.826 0.00 0.00 0.00 3.08
410 411 4.262506 GCCCACAATAGATAGGACAGGTAC 60.263 50.000 0.00 0.00 0.00 3.34
411 412 4.899457 CCCACAATAGATAGGACAGGTACA 59.101 45.833 0.00 0.00 0.00 2.90
412 413 5.221461 CCCACAATAGATAGGACAGGTACAC 60.221 48.000 0.00 0.00 0.00 2.90
413 414 5.362717 CCACAATAGATAGGACAGGTACACA 59.637 44.000 0.00 0.00 0.00 3.72
414 415 6.461648 CCACAATAGATAGGACAGGTACACAG 60.462 46.154 0.00 0.00 0.00 3.66
415 416 6.096987 CACAATAGATAGGACAGGTACACAGT 59.903 42.308 0.00 0.00 0.00 3.55
416 417 7.284716 CACAATAGATAGGACAGGTACACAGTA 59.715 40.741 0.00 0.00 0.00 2.74
417 418 7.284944 ACAATAGATAGGACAGGTACACAGTAC 59.715 40.741 0.00 0.00 0.00 2.73
418 419 5.188988 AGATAGGACAGGTACACAGTACA 57.811 43.478 9.27 0.00 0.00 2.90
419 420 4.948621 AGATAGGACAGGTACACAGTACAC 59.051 45.833 9.27 0.03 0.00 2.90
420 421 2.953453 AGGACAGGTACACAGTACACA 58.047 47.619 9.27 0.00 0.00 3.72
421 422 2.891580 AGGACAGGTACACAGTACACAG 59.108 50.000 9.27 1.69 0.00 3.66
422 423 2.889045 GGACAGGTACACAGTACACAGA 59.111 50.000 9.27 0.00 0.00 3.41
423 424 3.305199 GGACAGGTACACAGTACACAGAC 60.305 52.174 9.27 0.18 0.00 3.51
424 425 3.293337 ACAGGTACACAGTACACAGACA 58.707 45.455 9.27 0.00 0.00 3.41
425 426 3.067742 ACAGGTACACAGTACACAGACAC 59.932 47.826 9.27 0.00 0.00 3.67
426 427 2.292569 AGGTACACAGTACACAGACACG 59.707 50.000 9.27 0.00 0.00 4.49
427 428 2.049228 GTACACAGTACACAGACACGC 58.951 52.381 0.00 0.00 0.00 5.34
428 429 0.594028 ACACAGTACACAGACACGCG 60.594 55.000 3.53 3.53 0.00 6.01
429 430 1.660575 ACAGTACACAGACACGCGC 60.661 57.895 5.73 0.00 0.00 6.86
430 431 2.428569 AGTACACAGACACGCGCG 60.429 61.111 30.96 30.96 0.00 6.86
431 432 2.427905 GTACACAGACACGCGCGA 60.428 61.111 39.36 7.53 0.00 5.87
432 433 2.127003 TACACAGACACGCGCGAG 60.127 61.111 39.36 32.08 0.00 5.03
433 434 2.609759 TACACAGACACGCGCGAGA 61.610 57.895 39.36 7.75 0.00 4.04
434 435 2.775359 TACACAGACACGCGCGAGAC 62.775 60.000 39.36 28.69 0.00 3.36
435 436 3.661131 ACAGACACGCGCGAGACT 61.661 61.111 39.36 30.56 0.00 3.24
436 437 3.168604 CAGACACGCGCGAGACTG 61.169 66.667 33.84 33.84 0.00 3.51
460 461 4.360405 GGGGTTCCACCGCCATGT 62.360 66.667 0.00 0.00 44.59 3.21
461 462 2.750237 GGGTTCCACCGCCATGTC 60.750 66.667 0.00 0.00 39.83 3.06
462 463 2.033448 GGTTCCACCGCCATGTCA 59.967 61.111 0.00 0.00 0.00 3.58
463 464 2.040544 GGTTCCACCGCCATGTCAG 61.041 63.158 0.00 0.00 0.00 3.51
464 465 2.359850 TTCCACCGCCATGTCAGC 60.360 61.111 0.00 0.00 0.00 4.26
482 483 4.115199 GATCCGCACCCCCTTGCT 62.115 66.667 0.00 0.00 40.62 3.91
483 484 4.115199 ATCCGCACCCCCTTGCTC 62.115 66.667 0.00 0.00 40.62 4.26
488 489 4.722700 CACCCCCTTGCTCCACCG 62.723 72.222 0.00 0.00 0.00 4.94
492 493 4.659172 CCCTTGCTCCACCGCCAA 62.659 66.667 0.00 0.00 0.00 4.52
493 494 3.365265 CCTTGCTCCACCGCCAAC 61.365 66.667 0.00 0.00 0.00 3.77
494 495 3.365265 CTTGCTCCACCGCCAACC 61.365 66.667 0.00 0.00 0.00 3.77
495 496 4.196778 TTGCTCCACCGCCAACCA 62.197 61.111 0.00 0.00 0.00 3.67
496 497 4.641645 TGCTCCACCGCCAACCAG 62.642 66.667 0.00 0.00 0.00 4.00
544 545 4.373116 GCGAGCCCAACCGTCAGA 62.373 66.667 0.00 0.00 0.00 3.27
545 546 2.579201 CGAGCCCAACCGTCAGAT 59.421 61.111 0.00 0.00 0.00 2.90
546 547 1.519455 CGAGCCCAACCGTCAGATC 60.519 63.158 0.00 0.00 0.00 2.75
547 548 1.901085 GAGCCCAACCGTCAGATCT 59.099 57.895 0.00 0.00 0.00 2.75
548 549 0.460987 GAGCCCAACCGTCAGATCTG 60.461 60.000 17.07 17.07 0.00 2.90
549 550 0.904865 AGCCCAACCGTCAGATCTGA 60.905 55.000 21.67 21.67 37.24 3.27
550 551 0.460987 GCCCAACCGTCAGATCTGAG 60.461 60.000 25.76 17.00 40.75 3.35
551 552 0.460987 CCCAACCGTCAGATCTGAGC 60.461 60.000 25.76 17.97 40.75 4.26
552 553 0.803768 CCAACCGTCAGATCTGAGCG 60.804 60.000 25.76 26.46 40.75 5.03
553 554 1.153745 AACCGTCAGATCTGAGCGC 60.154 57.895 25.76 13.17 40.75 5.92
554 555 2.653448 CCGTCAGATCTGAGCGCG 60.653 66.667 25.76 23.11 40.75 6.86
555 556 2.405191 CGTCAGATCTGAGCGCGA 59.595 61.111 25.76 0.00 40.75 5.87
556 557 1.009108 CGTCAGATCTGAGCGCGAT 60.009 57.895 25.76 1.23 40.75 4.58
557 558 0.996229 CGTCAGATCTGAGCGCGATC 60.996 60.000 25.76 19.12 40.75 3.69
558 559 0.662970 GTCAGATCTGAGCGCGATCC 60.663 60.000 25.76 6.03 40.75 3.36
559 560 1.728778 CAGATCTGAGCGCGATCCG 60.729 63.158 23.12 16.35 38.39 4.18
560 561 2.429907 GATCTGAGCGCGATCCGG 60.430 66.667 23.12 14.63 37.44 5.14
561 562 3.905705 GATCTGAGCGCGATCCGGG 62.906 68.421 23.12 12.02 42.59 5.73
563 564 3.983494 CTGAGCGCGATCCGGGAT 61.983 66.667 23.12 9.85 42.31 3.85
565 566 4.726351 GAGCGCGATCCGGGATCC 62.726 72.222 27.07 19.32 46.42 3.36
930 931 0.738389 CTACCCAATTCGCCGCATTT 59.262 50.000 0.00 0.00 0.00 2.32
967 980 1.732917 CCGCACAGCAAAGGAAACA 59.267 52.632 0.00 0.00 0.00 2.83
974 987 1.682854 CAGCAAAGGAAACAGAAGCCA 59.317 47.619 0.00 0.00 0.00 4.75
975 988 2.101249 CAGCAAAGGAAACAGAAGCCAA 59.899 45.455 0.00 0.00 0.00 4.52
976 989 2.363359 AGCAAAGGAAACAGAAGCCAAG 59.637 45.455 0.00 0.00 0.00 3.61
977 990 2.101415 GCAAAGGAAACAGAAGCCAAGT 59.899 45.455 0.00 0.00 0.00 3.16
978 991 3.430790 GCAAAGGAAACAGAAGCCAAGTT 60.431 43.478 0.00 0.00 0.00 2.66
979 992 4.758688 CAAAGGAAACAGAAGCCAAGTTT 58.241 39.130 0.00 0.00 38.10 2.66
980 993 4.655762 AAGGAAACAGAAGCCAAGTTTC 57.344 40.909 8.34 8.34 46.29 2.78
982 995 3.963383 GAAACAGAAGCCAAGTTTCGA 57.037 42.857 0.00 0.00 40.89 3.71
983 996 4.287238 GAAACAGAAGCCAAGTTTCGAA 57.713 40.909 0.00 0.00 40.89 3.71
984 997 3.971032 AACAGAAGCCAAGTTTCGAAG 57.029 42.857 0.00 0.00 0.00 3.79
985 998 1.604278 ACAGAAGCCAAGTTTCGAAGC 59.396 47.619 3.49 3.49 0.00 3.86
986 999 1.068954 CAGAAGCCAAGTTTCGAAGCC 60.069 52.381 8.51 0.00 0.00 4.35
987 1000 0.110192 GAAGCCAAGTTTCGAAGCCG 60.110 55.000 8.51 0.30 37.07 5.52
988 1001 0.534203 AAGCCAAGTTTCGAAGCCGA 60.534 50.000 8.51 0.00 43.96 5.54
989 1002 1.206831 GCCAAGTTTCGAAGCCGAC 59.793 57.895 8.51 0.00 45.50 4.79
990 1003 1.503818 GCCAAGTTTCGAAGCCGACA 61.504 55.000 8.51 0.00 45.50 4.35
997 1010 0.895530 TTCGAAGCCGACAAGAGGAT 59.104 50.000 0.00 0.00 45.50 3.24
1084 1105 1.609794 ACCAAGGTCCGTCTCCTCC 60.610 63.158 0.00 0.00 33.76 4.30
1135 1182 1.844497 CCCTCCCCTCCTCGTTAATTT 59.156 52.381 0.00 0.00 0.00 1.82
1151 1202 6.647481 TCGTTAATTTCTCCGATCTGTTTGAA 59.353 34.615 0.00 0.00 0.00 2.69
1152 1203 7.171848 TCGTTAATTTCTCCGATCTGTTTGAAA 59.828 33.333 0.00 0.00 0.00 2.69
1164 1255 6.075728 CGATCTGTTTGAAATTGAATCGATGC 60.076 38.462 0.00 0.00 0.00 3.91
1175 1272 1.398390 GAATCGATGCGTTTTCAGGCT 59.602 47.619 0.00 0.00 34.69 4.58
1187 1284 2.045536 CAGGCTGCCAGGAAGTCC 60.046 66.667 22.65 0.00 0.00 3.85
1533 1630 1.210478 CGAGACCAAGACCAATCCCAT 59.790 52.381 0.00 0.00 0.00 4.00
1578 1690 3.716006 CACCGTTCGCCAGCAGTG 61.716 66.667 0.00 0.00 0.00 3.66
1587 1699 1.236616 CGCCAGCAGTGGTTGATTCA 61.237 55.000 0.00 0.00 46.96 2.57
1588 1700 0.961019 GCCAGCAGTGGTTGATTCAA 59.039 50.000 0.00 0.00 46.96 2.69
1589 1701 1.547372 GCCAGCAGTGGTTGATTCAAT 59.453 47.619 1.78 0.00 46.96 2.57
1592 1707 3.006110 CCAGCAGTGGTTGATTCAATTGT 59.994 43.478 5.13 0.00 39.30 2.71
1663 1782 7.865385 TGCTTACTGTGAAATTGTTGGTTAATC 59.135 33.333 0.00 0.00 0.00 1.75
1698 1817 8.716646 TCGACCATTATCGATATATGCAATTT 57.283 30.769 5.84 0.00 45.84 1.82
1751 1922 5.738909 TCTCTGAATCCTCTTGTGATTTCC 58.261 41.667 0.00 0.00 32.74 3.13
1784 1956 3.003480 CCTCTTGTGATTTCCGTTCTCC 58.997 50.000 0.00 0.00 0.00 3.71
1787 1959 2.074547 TGTGATTTCCGTTCTCCGAC 57.925 50.000 0.00 0.00 39.56 4.79
1796 1968 0.456995 CGTTCTCCGACTCCTCTTGC 60.457 60.000 0.00 0.00 39.56 4.01
1811 1983 3.070018 CTCTTGCGATTTTCTCTGTGGT 58.930 45.455 0.00 0.00 0.00 4.16
1823 1995 2.311841 TCTCTGTGGTGGATAGAGGTCA 59.688 50.000 0.00 0.00 39.75 4.02
1881 2062 1.908619 GGGGAATTTGATTTGGGCACT 59.091 47.619 0.00 0.00 0.00 4.40
1936 2407 2.328235 GCGATAGGTGTAGGCTCGA 58.672 57.895 0.00 0.00 0.00 4.04
1982 2453 3.504520 TGGTTAAAAAGACCATCGGCTTC 59.495 43.478 0.00 0.00 42.06 3.86
1992 2463 0.247301 CATCGGCTTCTTCGTTTCGC 60.247 55.000 0.00 0.00 0.00 4.70
2003 2474 0.111001 TCGTTTCGCTAGCGCAAAAC 60.111 50.000 30.02 30.02 39.59 2.43
2012 2483 2.285084 GCTAGCGCAAAACGTACTCATC 60.285 50.000 11.47 0.00 46.11 2.92
2013 2484 2.080286 AGCGCAAAACGTACTCATCT 57.920 45.000 11.47 0.00 46.11 2.90
2015 2486 2.921754 AGCGCAAAACGTACTCATCTAC 59.078 45.455 11.47 0.00 46.11 2.59
2017 2488 3.306166 GCGCAAAACGTACTCATCTACAT 59.694 43.478 0.30 0.00 46.11 2.29
2018 2489 4.548346 GCGCAAAACGTACTCATCTACATC 60.548 45.833 0.30 0.00 46.11 3.06
2019 2490 4.561213 CGCAAAACGTACTCATCTACATCA 59.439 41.667 0.00 0.00 36.87 3.07
2020 2491 5.275927 CGCAAAACGTACTCATCTACATCAG 60.276 44.000 0.00 0.00 36.87 2.90
2021 2492 5.577164 GCAAAACGTACTCATCTACATCAGT 59.423 40.000 0.00 0.00 0.00 3.41
2022 2493 6.090898 GCAAAACGTACTCATCTACATCAGTT 59.909 38.462 0.00 0.00 0.00 3.16
2023 2494 7.360101 GCAAAACGTACTCATCTACATCAGTTT 60.360 37.037 0.00 0.00 0.00 2.66
2024 2495 7.582435 AAACGTACTCATCTACATCAGTTTG 57.418 36.000 0.00 0.00 0.00 2.93
2025 2496 6.510879 ACGTACTCATCTACATCAGTTTGA 57.489 37.500 0.00 0.00 0.00 2.69
2026 2497 6.556212 ACGTACTCATCTACATCAGTTTGAG 58.444 40.000 0.00 0.00 39.47 3.02
2027 2498 6.151312 ACGTACTCATCTACATCAGTTTGAGT 59.849 38.462 8.28 8.28 44.10 3.41
2028 2499 7.336176 ACGTACTCATCTACATCAGTTTGAGTA 59.664 37.037 6.52 6.52 42.13 2.59
2048 2519 7.216494 TGAGTAACTCATTTGACATCAGTTCA 58.784 34.615 0.00 0.00 35.39 3.18
2054 2525 8.450578 ACTCATTTGACATCAGTTCAAGTAAA 57.549 30.769 0.00 0.00 0.00 2.01
2060 2531 9.734620 TTTGACATCAGTTCAAGTAAATTTGAG 57.265 29.630 0.00 0.00 38.25 3.02
2086 2557 5.600484 TGTTGCCTTCCTTCAATCCTTTTTA 59.400 36.000 0.00 0.00 0.00 1.52
2122 2593 4.632327 TGGTTGTACAATCTGTGATGGA 57.368 40.909 19.28 0.00 0.00 3.41
2125 2596 4.576463 GGTTGTACAATCTGTGATGGATCC 59.424 45.833 12.26 4.20 0.00 3.36
2126 2597 4.058721 TGTACAATCTGTGATGGATCCG 57.941 45.455 7.39 0.00 0.00 4.18
2135 2606 5.750524 TCTGTGATGGATCCGGAAATAAAA 58.249 37.500 9.01 0.00 0.00 1.52
2183 2659 4.003788 CCCGGACCAGCACGAACT 62.004 66.667 0.73 0.00 0.00 3.01
2211 2764 5.997746 TGTCCAGTCAAAATTCTGAAGTAGG 59.002 40.000 0.00 0.00 34.02 3.18
2353 2914 1.898330 TATCGCAGGTGCTTGGCAGA 61.898 55.000 0.00 0.00 40.08 4.26
2374 2935 3.018423 TGGATCGAACAGAGATGGAGA 57.982 47.619 0.00 0.00 0.00 3.71
2375 2936 3.570540 TGGATCGAACAGAGATGGAGAT 58.429 45.455 0.00 0.00 0.00 2.75
2376 2937 3.320256 TGGATCGAACAGAGATGGAGATG 59.680 47.826 0.00 0.00 0.00 2.90
2377 2938 3.571828 GGATCGAACAGAGATGGAGATGA 59.428 47.826 0.00 0.00 0.00 2.92
2378 2939 4.038522 GGATCGAACAGAGATGGAGATGAA 59.961 45.833 0.00 0.00 0.00 2.57
2379 2940 4.645762 TCGAACAGAGATGGAGATGAAG 57.354 45.455 0.00 0.00 0.00 3.02
2384 2945 6.261158 CGAACAGAGATGGAGATGAAGTACTA 59.739 42.308 0.00 0.00 0.00 1.82
2441 3002 2.104111 AGAGGTGGACACGAATTTGTGA 59.896 45.455 28.80 7.17 42.55 3.58
2461 3022 4.025360 TGATGTTCCTTTGGATTGATGGG 58.975 43.478 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.109705 ACATGTTCAGTACATATCAGCAAAAA 57.890 30.769 0.00 0.00 45.71 1.94
24 25 7.686438 ACATGTTCAGTACATATCAGCAAAA 57.314 32.000 0.00 0.00 45.71 2.44
25 26 7.821846 TGTACATGTTCAGTACATATCAGCAAA 59.178 33.333 2.30 0.00 45.71 3.68
26 27 7.327214 TGTACATGTTCAGTACATATCAGCAA 58.673 34.615 2.30 0.00 45.71 3.91
27 28 6.872920 TGTACATGTTCAGTACATATCAGCA 58.127 36.000 2.30 0.00 45.71 4.41
36 37 9.938670 TTTTTACACATTGTACATGTTCAGTAC 57.061 29.630 2.30 0.00 41.63 2.73
122 123 6.204495 ACGTACACACCGGTAACATTATTTTT 59.796 34.615 6.87 0.00 0.00 1.94
123 124 5.700373 ACGTACACACCGGTAACATTATTTT 59.300 36.000 6.87 0.00 0.00 1.82
124 125 5.237048 ACGTACACACCGGTAACATTATTT 58.763 37.500 6.87 0.00 0.00 1.40
125 126 4.819769 ACGTACACACCGGTAACATTATT 58.180 39.130 6.87 0.00 0.00 1.40
126 127 4.454728 ACGTACACACCGGTAACATTAT 57.545 40.909 6.87 0.00 0.00 1.28
127 128 3.932545 ACGTACACACCGGTAACATTA 57.067 42.857 6.87 0.00 0.00 1.90
128 129 2.818130 ACGTACACACCGGTAACATT 57.182 45.000 6.87 0.00 0.00 2.71
129 130 3.932545 TTACGTACACACCGGTAACAT 57.067 42.857 6.87 0.00 0.00 2.71
130 131 3.932545 ATTACGTACACACCGGTAACA 57.067 42.857 6.87 0.00 0.00 2.41
131 132 5.821204 AGATATTACGTACACACCGGTAAC 58.179 41.667 6.87 2.33 0.00 2.50
132 133 6.540551 TGTAGATATTACGTACACACCGGTAA 59.459 38.462 6.87 0.00 0.00 2.85
133 134 6.052360 TGTAGATATTACGTACACACCGGTA 58.948 40.000 6.87 0.00 0.00 4.02
134 135 4.881273 TGTAGATATTACGTACACACCGGT 59.119 41.667 0.00 0.00 0.00 5.28
135 136 5.422666 TGTAGATATTACGTACACACCGG 57.577 43.478 0.00 0.00 0.00 5.28
136 137 7.433131 ACATTTGTAGATATTACGTACACACCG 59.567 37.037 0.00 0.00 0.00 4.94
137 138 8.537223 CACATTTGTAGATATTACGTACACACC 58.463 37.037 0.00 0.00 0.00 4.16
138 139 9.079833 ACACATTTGTAGATATTACGTACACAC 57.920 33.333 0.00 0.00 32.60 3.82
151 152 9.855021 GCCTGTTTTTAATACACATTTGTAGAT 57.145 29.630 0.00 0.00 41.62 1.98
152 153 8.851145 TGCCTGTTTTTAATACACATTTGTAGA 58.149 29.630 0.00 0.00 41.62 2.59
153 154 9.638239 ATGCCTGTTTTTAATACACATTTGTAG 57.362 29.630 0.00 0.00 41.62 2.74
154 155 9.416794 CATGCCTGTTTTTAATACACATTTGTA 57.583 29.630 0.00 0.00 42.53 2.41
155 156 7.930865 ACATGCCTGTTTTTAATACACATTTGT 59.069 29.630 0.00 0.00 33.84 2.83
156 157 8.222433 CACATGCCTGTTTTTAATACACATTTG 58.778 33.333 0.00 0.00 31.62 2.32
157 158 7.930865 ACACATGCCTGTTTTTAATACACATTT 59.069 29.630 0.00 0.00 31.62 2.32
158 159 7.441017 ACACATGCCTGTTTTTAATACACATT 58.559 30.769 0.00 0.00 31.62 2.71
159 160 6.991938 ACACATGCCTGTTTTTAATACACAT 58.008 32.000 0.00 0.00 31.62 3.21
160 161 6.398234 ACACATGCCTGTTTTTAATACACA 57.602 33.333 0.00 0.00 31.62 3.72
161 162 5.567534 CGACACATGCCTGTTTTTAATACAC 59.432 40.000 0.00 0.00 31.62 2.90
162 163 5.470437 TCGACACATGCCTGTTTTTAATACA 59.530 36.000 0.00 0.00 31.62 2.29
163 164 5.933790 TCGACACATGCCTGTTTTTAATAC 58.066 37.500 0.00 0.00 31.62 1.89
164 165 6.561737 TTCGACACATGCCTGTTTTTAATA 57.438 33.333 0.00 0.00 31.62 0.98
165 166 5.446143 TTCGACACATGCCTGTTTTTAAT 57.554 34.783 0.00 0.00 31.62 1.40
166 167 4.902443 TTCGACACATGCCTGTTTTTAA 57.098 36.364 0.00 0.00 31.62 1.52
167 168 6.561737 TTATTCGACACATGCCTGTTTTTA 57.438 33.333 0.00 0.00 31.62 1.52
168 169 5.446143 TTATTCGACACATGCCTGTTTTT 57.554 34.783 0.00 0.00 31.62 1.94
169 170 5.446143 TTTATTCGACACATGCCTGTTTT 57.554 34.783 0.00 0.00 31.62 2.43
170 171 5.446143 TTTTATTCGACACATGCCTGTTT 57.554 34.783 0.00 0.00 31.62 2.83
171 172 5.446143 TTTTTATTCGACACATGCCTGTT 57.554 34.783 0.00 0.00 31.62 3.16
172 173 5.643379 ATTTTTATTCGACACATGCCTGT 57.357 34.783 0.00 0.00 35.44 4.00
173 174 7.220683 CCTTTATTTTTATTCGACACATGCCTG 59.779 37.037 0.00 0.00 0.00 4.85
174 175 7.257722 CCTTTATTTTTATTCGACACATGCCT 58.742 34.615 0.00 0.00 0.00 4.75
175 176 6.475402 CCCTTTATTTTTATTCGACACATGCC 59.525 38.462 0.00 0.00 0.00 4.40
176 177 7.254852 TCCCTTTATTTTTATTCGACACATGC 58.745 34.615 0.00 0.00 0.00 4.06
177 178 9.632807 TTTCCCTTTATTTTTATTCGACACATG 57.367 29.630 0.00 0.00 0.00 3.21
178 179 9.634163 GTTTCCCTTTATTTTTATTCGACACAT 57.366 29.630 0.00 0.00 0.00 3.21
179 180 8.630917 TGTTTCCCTTTATTTTTATTCGACACA 58.369 29.630 0.00 0.00 0.00 3.72
180 181 9.465985 TTGTTTCCCTTTATTTTTATTCGACAC 57.534 29.630 0.00 0.00 0.00 3.67
189 190 9.541143 CAGTGTACATTGTTTCCCTTTATTTTT 57.459 29.630 10.06 0.00 0.00 1.94
190 191 8.919145 TCAGTGTACATTGTTTCCCTTTATTTT 58.081 29.630 16.89 0.00 0.00 1.82
191 192 8.472007 TCAGTGTACATTGTTTCCCTTTATTT 57.528 30.769 16.89 0.00 0.00 1.40
192 193 7.176690 CCTCAGTGTACATTGTTTCCCTTTATT 59.823 37.037 16.89 0.00 0.00 1.40
193 194 6.659242 CCTCAGTGTACATTGTTTCCCTTTAT 59.341 38.462 16.89 0.00 0.00 1.40
194 195 6.001460 CCTCAGTGTACATTGTTTCCCTTTA 58.999 40.000 16.89 0.00 0.00 1.85
195 196 4.827284 CCTCAGTGTACATTGTTTCCCTTT 59.173 41.667 16.89 0.00 0.00 3.11
196 197 4.104102 TCCTCAGTGTACATTGTTTCCCTT 59.896 41.667 16.89 0.00 0.00 3.95
197 198 3.650942 TCCTCAGTGTACATTGTTTCCCT 59.349 43.478 16.89 0.00 0.00 4.20
198 199 4.015872 TCCTCAGTGTACATTGTTTCCC 57.984 45.455 16.89 0.00 0.00 3.97
199 200 6.206634 TCATTTCCTCAGTGTACATTGTTTCC 59.793 38.462 16.89 0.00 0.00 3.13
200 201 7.202016 TCATTTCCTCAGTGTACATTGTTTC 57.798 36.000 16.89 0.00 0.00 2.78
201 202 7.581213 TTCATTTCCTCAGTGTACATTGTTT 57.419 32.000 16.89 0.00 0.00 2.83
202 203 7.068103 TGTTTCATTTCCTCAGTGTACATTGTT 59.932 33.333 16.89 0.00 0.00 2.83
203 204 6.545666 TGTTTCATTTCCTCAGTGTACATTGT 59.454 34.615 16.89 0.00 0.00 2.71
204 205 6.969366 TGTTTCATTTCCTCAGTGTACATTG 58.031 36.000 11.91 11.91 0.00 2.82
205 206 6.998074 TCTGTTTCATTTCCTCAGTGTACATT 59.002 34.615 0.00 0.00 0.00 2.71
206 207 6.533730 TCTGTTTCATTTCCTCAGTGTACAT 58.466 36.000 0.00 0.00 0.00 2.29
207 208 5.924356 TCTGTTTCATTTCCTCAGTGTACA 58.076 37.500 0.00 0.00 0.00 2.90
208 209 6.223852 TCTCTGTTTCATTTCCTCAGTGTAC 58.776 40.000 0.00 0.00 0.00 2.90
209 210 6.419484 TCTCTGTTTCATTTCCTCAGTGTA 57.581 37.500 0.00 0.00 0.00 2.90
210 211 5.296151 TCTCTGTTTCATTTCCTCAGTGT 57.704 39.130 0.00 0.00 0.00 3.55
211 212 6.038603 TGTTTCTCTGTTTCATTTCCTCAGTG 59.961 38.462 0.00 0.00 0.00 3.66
212 213 6.122277 TGTTTCTCTGTTTCATTTCCTCAGT 58.878 36.000 0.00 0.00 0.00 3.41
213 214 6.624352 TGTTTCTCTGTTTCATTTCCTCAG 57.376 37.500 0.00 0.00 0.00 3.35
214 215 7.403312 TTTGTTTCTCTGTTTCATTTCCTCA 57.597 32.000 0.00 0.00 0.00 3.86
215 216 8.190784 TCTTTTGTTTCTCTGTTTCATTTCCTC 58.809 33.333 0.00 0.00 0.00 3.71
216 217 8.066612 TCTTTTGTTTCTCTGTTTCATTTCCT 57.933 30.769 0.00 0.00 0.00 3.36
217 218 8.702163 TTCTTTTGTTTCTCTGTTTCATTTCC 57.298 30.769 0.00 0.00 0.00 3.13
218 219 9.958285 GTTTCTTTTGTTTCTCTGTTTCATTTC 57.042 29.630 0.00 0.00 0.00 2.17
219 220 9.487790 TGTTTCTTTTGTTTCTCTGTTTCATTT 57.512 25.926 0.00 0.00 0.00 2.32
220 221 8.925700 GTGTTTCTTTTGTTTCTCTGTTTCATT 58.074 29.630 0.00 0.00 0.00 2.57
221 222 7.545615 GGTGTTTCTTTTGTTTCTCTGTTTCAT 59.454 33.333 0.00 0.00 0.00 2.57
222 223 6.866248 GGTGTTTCTTTTGTTTCTCTGTTTCA 59.134 34.615 0.00 0.00 0.00 2.69
223 224 7.090808 AGGTGTTTCTTTTGTTTCTCTGTTTC 58.909 34.615 0.00 0.00 0.00 2.78
224 225 6.993079 AGGTGTTTCTTTTGTTTCTCTGTTT 58.007 32.000 0.00 0.00 0.00 2.83
225 226 6.590234 AGGTGTTTCTTTTGTTTCTCTGTT 57.410 33.333 0.00 0.00 0.00 3.16
226 227 6.590234 AAGGTGTTTCTTTTGTTTCTCTGT 57.410 33.333 0.00 0.00 0.00 3.41
227 228 7.985476 TCTAAGGTGTTTCTTTTGTTTCTCTG 58.015 34.615 0.00 0.00 0.00 3.35
228 229 8.575649 TTCTAAGGTGTTTCTTTTGTTTCTCT 57.424 30.769 0.00 0.00 0.00 3.10
229 230 9.073368 GTTTCTAAGGTGTTTCTTTTGTTTCTC 57.927 33.333 0.00 0.00 0.00 2.87
230 231 8.581578 TGTTTCTAAGGTGTTTCTTTTGTTTCT 58.418 29.630 0.00 0.00 0.00 2.52
231 232 8.751302 TGTTTCTAAGGTGTTTCTTTTGTTTC 57.249 30.769 0.00 0.00 0.00 2.78
232 233 9.549078 TTTGTTTCTAAGGTGTTTCTTTTGTTT 57.451 25.926 0.00 0.00 0.00 2.83
233 234 9.203421 CTTTGTTTCTAAGGTGTTTCTTTTGTT 57.797 29.630 0.00 0.00 0.00 2.83
234 235 8.581578 TCTTTGTTTCTAAGGTGTTTCTTTTGT 58.418 29.630 0.00 0.00 0.00 2.83
235 236 8.980143 TCTTTGTTTCTAAGGTGTTTCTTTTG 57.020 30.769 0.00 0.00 0.00 2.44
236 237 9.990360 TTTCTTTGTTTCTAAGGTGTTTCTTTT 57.010 25.926 0.00 0.00 0.00 2.27
237 238 9.990360 TTTTCTTTGTTTCTAAGGTGTTTCTTT 57.010 25.926 0.00 0.00 0.00 2.52
238 239 9.990360 TTTTTCTTTGTTTCTAAGGTGTTTCTT 57.010 25.926 0.00 0.00 0.00 2.52
241 242 9.936759 TCATTTTTCTTTGTTTCTAAGGTGTTT 57.063 25.926 0.00 0.00 0.00 2.83
242 243 9.936759 TTCATTTTTCTTTGTTTCTAAGGTGTT 57.063 25.926 0.00 0.00 0.00 3.32
243 244 9.936759 TTTCATTTTTCTTTGTTTCTAAGGTGT 57.063 25.926 0.00 0.00 0.00 4.16
268 269 5.506730 TTCAAGGTTTCCTTTGGGTTTTT 57.493 34.783 0.00 0.00 41.69 1.94
269 270 5.506730 TTTCAAGGTTTCCTTTGGGTTTT 57.493 34.783 0.00 0.00 41.69 2.43
270 271 5.250200 GTTTTCAAGGTTTCCTTTGGGTTT 58.750 37.500 0.00 0.00 41.69 3.27
271 272 4.323945 GGTTTTCAAGGTTTCCTTTGGGTT 60.324 41.667 0.00 0.00 41.69 4.11
272 273 3.199071 GGTTTTCAAGGTTTCCTTTGGGT 59.801 43.478 0.00 0.00 41.69 4.51
273 274 3.433031 GGGTTTTCAAGGTTTCCTTTGGG 60.433 47.826 0.00 0.00 41.69 4.12
274 275 3.198853 TGGGTTTTCAAGGTTTCCTTTGG 59.801 43.478 0.00 0.00 41.69 3.28
275 276 4.479786 TGGGTTTTCAAGGTTTCCTTTG 57.520 40.909 0.00 0.00 41.69 2.77
276 277 4.719273 TCATGGGTTTTCAAGGTTTCCTTT 59.281 37.500 0.00 0.00 41.69 3.11
277 278 4.294347 TCATGGGTTTTCAAGGTTTCCTT 58.706 39.130 0.00 0.00 45.88 3.36
278 279 3.922375 TCATGGGTTTTCAAGGTTTCCT 58.078 40.909 0.00 0.00 33.87 3.36
279 280 4.890158 ATCATGGGTTTTCAAGGTTTCC 57.110 40.909 0.00 0.00 0.00 3.13
280 281 8.846943 AATTTATCATGGGTTTTCAAGGTTTC 57.153 30.769 0.00 0.00 0.00 2.78
283 284 9.942850 CTTAAATTTATCATGGGTTTTCAAGGT 57.057 29.630 0.00 0.00 0.00 3.50
284 285 9.942850 ACTTAAATTTATCATGGGTTTTCAAGG 57.057 29.630 0.00 0.00 0.00 3.61
315 316 8.810041 AGCTCCAAATTTGTCTATGATTTCTTT 58.190 29.630 16.73 0.00 0.00 2.52
316 317 8.358582 AGCTCCAAATTTGTCTATGATTTCTT 57.641 30.769 16.73 0.00 0.00 2.52
317 318 7.833183 AGAGCTCCAAATTTGTCTATGATTTCT 59.167 33.333 16.73 8.85 0.00 2.52
318 319 7.914346 CAGAGCTCCAAATTTGTCTATGATTTC 59.086 37.037 16.73 7.12 0.00 2.17
319 320 7.613022 TCAGAGCTCCAAATTTGTCTATGATTT 59.387 33.333 16.73 0.00 0.00 2.17
320 321 7.114754 TCAGAGCTCCAAATTTGTCTATGATT 58.885 34.615 16.73 0.00 0.00 2.57
321 322 6.656902 TCAGAGCTCCAAATTTGTCTATGAT 58.343 36.000 16.73 1.25 0.00 2.45
322 323 6.053632 TCAGAGCTCCAAATTTGTCTATGA 57.946 37.500 16.73 17.40 0.00 2.15
323 324 6.373774 ACTTCAGAGCTCCAAATTTGTCTATG 59.626 38.462 16.73 15.76 0.00 2.23
324 325 6.479884 ACTTCAGAGCTCCAAATTTGTCTAT 58.520 36.000 16.73 5.71 0.00 1.98
325 326 5.869579 ACTTCAGAGCTCCAAATTTGTCTA 58.130 37.500 16.73 1.71 0.00 2.59
326 327 4.723309 ACTTCAGAGCTCCAAATTTGTCT 58.277 39.130 16.73 9.87 0.00 3.41
327 328 5.444663 AACTTCAGAGCTCCAAATTTGTC 57.555 39.130 16.73 7.78 0.00 3.18
328 329 6.239036 GGTTAACTTCAGAGCTCCAAATTTGT 60.239 38.462 16.73 0.00 0.00 2.83
329 330 6.015940 AGGTTAACTTCAGAGCTCCAAATTTG 60.016 38.462 10.93 11.40 0.00 2.32
330 331 6.015940 CAGGTTAACTTCAGAGCTCCAAATTT 60.016 38.462 10.93 8.13 0.00 1.82
331 332 5.474876 CAGGTTAACTTCAGAGCTCCAAATT 59.525 40.000 10.93 2.47 0.00 1.82
332 333 5.006386 CAGGTTAACTTCAGAGCTCCAAAT 58.994 41.667 10.93 0.00 0.00 2.32
333 334 4.102524 TCAGGTTAACTTCAGAGCTCCAAA 59.897 41.667 10.93 4.06 0.00 3.28
334 335 3.646162 TCAGGTTAACTTCAGAGCTCCAA 59.354 43.478 10.93 2.57 0.00 3.53
335 336 3.006967 GTCAGGTTAACTTCAGAGCTCCA 59.993 47.826 10.93 0.00 0.00 3.86
336 337 3.591023 GTCAGGTTAACTTCAGAGCTCC 58.409 50.000 10.93 0.00 0.00 4.70
337 338 3.259625 AGGTCAGGTTAACTTCAGAGCTC 59.740 47.826 5.27 5.27 0.00 4.09
338 339 3.243724 AGGTCAGGTTAACTTCAGAGCT 58.756 45.455 5.42 10.00 0.00 4.09
339 340 3.006967 TGAGGTCAGGTTAACTTCAGAGC 59.993 47.826 5.42 8.08 30.31 4.09
340 341 4.873746 TGAGGTCAGGTTAACTTCAGAG 57.126 45.455 5.42 0.00 30.31 3.35
341 342 5.623956 TTTGAGGTCAGGTTAACTTCAGA 57.376 39.130 5.42 0.00 34.69 3.27
342 343 6.693315 TTTTTGAGGTCAGGTTAACTTCAG 57.307 37.500 5.42 0.00 34.69 3.02
343 344 6.040391 CCATTTTTGAGGTCAGGTTAACTTCA 59.960 38.462 5.42 0.00 31.70 3.02
344 345 6.447162 CCATTTTTGAGGTCAGGTTAACTTC 58.553 40.000 5.42 0.00 0.00 3.01
345 346 5.221441 GCCATTTTTGAGGTCAGGTTAACTT 60.221 40.000 5.42 0.00 0.00 2.66
346 347 4.280929 GCCATTTTTGAGGTCAGGTTAACT 59.719 41.667 5.42 0.00 0.00 2.24
347 348 4.556233 GCCATTTTTGAGGTCAGGTTAAC 58.444 43.478 0.00 0.00 0.00 2.01
348 349 3.576550 GGCCATTTTTGAGGTCAGGTTAA 59.423 43.478 0.00 0.00 0.00 2.01
349 350 3.161866 GGCCATTTTTGAGGTCAGGTTA 58.838 45.455 0.00 0.00 0.00 2.85
350 351 1.970640 GGCCATTTTTGAGGTCAGGTT 59.029 47.619 0.00 0.00 0.00 3.50
351 352 1.632589 GGCCATTTTTGAGGTCAGGT 58.367 50.000 0.00 0.00 0.00 4.00
352 353 0.897621 GGGCCATTTTTGAGGTCAGG 59.102 55.000 4.39 0.00 0.00 3.86
353 354 1.273327 GTGGGCCATTTTTGAGGTCAG 59.727 52.381 10.70 0.00 0.00 3.51
354 355 1.337118 GTGGGCCATTTTTGAGGTCA 58.663 50.000 10.70 0.00 0.00 4.02
355 356 0.243636 CGTGGGCCATTTTTGAGGTC 59.756 55.000 10.70 0.00 0.00 3.85
356 357 1.184970 CCGTGGGCCATTTTTGAGGT 61.185 55.000 10.70 0.00 0.00 3.85
357 358 1.591183 CCGTGGGCCATTTTTGAGG 59.409 57.895 10.70 1.11 0.00 3.86
358 359 1.079888 GCCGTGGGCCATTTTTGAG 60.080 57.895 10.70 0.00 44.06 3.02
359 360 3.055580 GCCGTGGGCCATTTTTGA 58.944 55.556 10.70 0.00 44.06 2.69
370 371 4.235762 CTGGTATCCGGGCCGTGG 62.236 72.222 26.32 10.85 0.00 4.94
371 372 4.910585 GCTGGTATCCGGGCCGTG 62.911 72.222 26.32 16.42 0.00 4.94
376 377 1.994885 ATTGTGGGCTGGTATCCGGG 61.995 60.000 0.00 0.00 0.00 5.73
377 378 0.762418 TATTGTGGGCTGGTATCCGG 59.238 55.000 0.00 0.00 0.00 5.14
378 379 1.691976 TCTATTGTGGGCTGGTATCCG 59.308 52.381 0.00 0.00 0.00 4.18
379 380 4.080863 CCTATCTATTGTGGGCTGGTATCC 60.081 50.000 0.00 0.00 0.00 2.59
380 381 4.777896 TCCTATCTATTGTGGGCTGGTATC 59.222 45.833 0.00 0.00 0.00 2.24
381 382 4.532521 GTCCTATCTATTGTGGGCTGGTAT 59.467 45.833 0.00 0.00 0.00 2.73
382 383 3.901844 GTCCTATCTATTGTGGGCTGGTA 59.098 47.826 0.00 0.00 0.00 3.25
383 384 2.706190 GTCCTATCTATTGTGGGCTGGT 59.294 50.000 0.00 0.00 0.00 4.00
384 385 2.705658 TGTCCTATCTATTGTGGGCTGG 59.294 50.000 0.00 0.00 0.00 4.85
385 386 3.244353 CCTGTCCTATCTATTGTGGGCTG 60.244 52.174 0.00 0.00 0.00 4.85
386 387 2.975489 CCTGTCCTATCTATTGTGGGCT 59.025 50.000 0.00 0.00 0.00 5.19
387 388 2.706190 ACCTGTCCTATCTATTGTGGGC 59.294 50.000 0.00 0.00 0.00 5.36
388 389 4.899457 TGTACCTGTCCTATCTATTGTGGG 59.101 45.833 0.00 0.00 0.00 4.61
389 390 5.362717 TGTGTACCTGTCCTATCTATTGTGG 59.637 44.000 0.00 0.00 0.00 4.17
390 391 6.096987 ACTGTGTACCTGTCCTATCTATTGTG 59.903 42.308 0.00 0.00 0.00 3.33
391 392 6.195700 ACTGTGTACCTGTCCTATCTATTGT 58.804 40.000 0.00 0.00 0.00 2.71
392 393 6.716934 ACTGTGTACCTGTCCTATCTATTG 57.283 41.667 0.00 0.00 0.00 1.90
393 394 7.284944 GTGTACTGTGTACCTGTCCTATCTATT 59.715 40.741 5.55 0.00 0.00 1.73
394 395 6.771749 GTGTACTGTGTACCTGTCCTATCTAT 59.228 42.308 5.55 0.00 0.00 1.98
395 396 6.118170 GTGTACTGTGTACCTGTCCTATCTA 58.882 44.000 5.55 0.00 0.00 1.98
396 397 4.948621 GTGTACTGTGTACCTGTCCTATCT 59.051 45.833 5.55 0.00 0.00 1.98
397 398 4.703575 TGTGTACTGTGTACCTGTCCTATC 59.296 45.833 5.55 0.00 0.00 2.08
398 399 4.669700 TGTGTACTGTGTACCTGTCCTAT 58.330 43.478 5.55 0.00 0.00 2.57
399 400 4.077108 CTGTGTACTGTGTACCTGTCCTA 58.923 47.826 5.55 0.00 0.00 2.94
400 401 2.891580 CTGTGTACTGTGTACCTGTCCT 59.108 50.000 5.55 0.00 0.00 3.85
401 402 2.889045 TCTGTGTACTGTGTACCTGTCC 59.111 50.000 5.55 0.00 0.00 4.02
402 403 3.317149 TGTCTGTGTACTGTGTACCTGTC 59.683 47.826 5.55 1.72 0.00 3.51
403 404 3.067742 GTGTCTGTGTACTGTGTACCTGT 59.932 47.826 5.55 0.00 0.00 4.00
404 405 3.639538 GTGTCTGTGTACTGTGTACCTG 58.360 50.000 5.55 2.64 0.00 4.00
405 406 2.292569 CGTGTCTGTGTACTGTGTACCT 59.707 50.000 5.55 0.00 0.00 3.08
406 407 2.658285 CGTGTCTGTGTACTGTGTACC 58.342 52.381 5.55 0.00 0.00 3.34
407 408 2.049228 GCGTGTCTGTGTACTGTGTAC 58.951 52.381 0.00 1.33 0.00 2.90
408 409 1.334329 CGCGTGTCTGTGTACTGTGTA 60.334 52.381 0.00 0.00 0.00 2.90
409 410 0.594028 CGCGTGTCTGTGTACTGTGT 60.594 55.000 0.00 0.00 0.00 3.72
410 411 1.876453 GCGCGTGTCTGTGTACTGTG 61.876 60.000 8.43 0.00 0.00 3.66
411 412 1.660575 GCGCGTGTCTGTGTACTGT 60.661 57.895 8.43 0.00 0.00 3.55
412 413 2.707090 CGCGCGTGTCTGTGTACTG 61.707 63.158 24.19 0.00 0.00 2.74
413 414 2.428569 CGCGCGTGTCTGTGTACT 60.429 61.111 24.19 0.00 0.00 2.73
414 415 2.426183 CTCGCGCGTGTCTGTGTAC 61.426 63.158 30.98 0.00 0.00 2.90
415 416 2.127003 CTCGCGCGTGTCTGTGTA 60.127 61.111 30.98 5.69 0.00 2.90
416 417 3.961197 TCTCGCGCGTGTCTGTGT 61.961 61.111 30.98 0.00 0.00 3.72
417 418 3.461982 GTCTCGCGCGTGTCTGTG 61.462 66.667 30.98 11.85 0.00 3.66
418 419 3.661131 AGTCTCGCGCGTGTCTGT 61.661 61.111 30.98 10.58 0.00 3.41
419 420 3.168604 CAGTCTCGCGCGTGTCTG 61.169 66.667 32.29 32.29 0.00 3.51
446 447 2.690778 GCTGACATGGCGGTGGAAC 61.691 63.158 9.70 0.00 0.00 3.62
447 448 2.359850 GCTGACATGGCGGTGGAA 60.360 61.111 9.70 0.00 0.00 3.53
450 451 2.528743 GATCGCTGACATGGCGGTG 61.529 63.158 15.24 15.24 46.85 4.94
471 472 4.722700 CGGTGGAGCAAGGGGGTG 62.723 72.222 0.00 0.00 0.00 4.61
475 476 4.659172 TTGGCGGTGGAGCAAGGG 62.659 66.667 0.00 0.00 39.27 3.95
476 477 3.365265 GTTGGCGGTGGAGCAAGG 61.365 66.667 0.00 0.00 39.27 3.61
477 478 3.365265 GGTTGGCGGTGGAGCAAG 61.365 66.667 0.00 0.00 39.27 4.01
478 479 4.196778 TGGTTGGCGGTGGAGCAA 62.197 61.111 0.00 0.00 39.27 3.91
479 480 4.641645 CTGGTTGGCGGTGGAGCA 62.642 66.667 0.00 0.00 39.27 4.26
527 528 3.665675 ATCTGACGGTTGGGCTCGC 62.666 63.158 0.00 0.00 0.00 5.03
528 529 1.519455 GATCTGACGGTTGGGCTCG 60.519 63.158 0.00 0.00 0.00 5.03
529 530 0.460987 CAGATCTGACGGTTGGGCTC 60.461 60.000 18.34 0.00 0.00 4.70
530 531 0.904865 TCAGATCTGACGGTTGGGCT 60.905 55.000 21.67 0.00 34.14 5.19
531 532 0.460987 CTCAGATCTGACGGTTGGGC 60.461 60.000 21.67 0.00 35.46 5.36
532 533 0.460987 GCTCAGATCTGACGGTTGGG 60.461 60.000 21.67 11.02 35.46 4.12
533 534 0.803768 CGCTCAGATCTGACGGTTGG 60.804 60.000 26.47 16.94 35.46 3.77
534 535 1.416813 GCGCTCAGATCTGACGGTTG 61.417 60.000 30.76 20.42 35.90 3.77
535 536 1.153745 GCGCTCAGATCTGACGGTT 60.154 57.895 30.76 0.00 35.90 4.44
536 537 2.492090 GCGCTCAGATCTGACGGT 59.508 61.111 30.76 0.00 35.90 4.83
537 538 2.399511 ATCGCGCTCAGATCTGACGG 62.400 60.000 30.76 24.37 35.90 4.79
538 539 0.996229 GATCGCGCTCAGATCTGACG 60.996 60.000 28.28 28.28 40.82 4.35
539 540 0.662970 GGATCGCGCTCAGATCTGAC 60.663 60.000 21.67 16.26 42.91 3.51
540 541 1.656998 GGATCGCGCTCAGATCTGA 59.343 57.895 23.75 23.75 42.91 3.27
541 542 1.728778 CGGATCGCGCTCAGATCTG 60.729 63.158 17.07 17.07 42.91 2.90
542 543 2.642129 CGGATCGCGCTCAGATCT 59.358 61.111 18.98 0.00 42.91 2.75
543 544 2.429907 CCGGATCGCGCTCAGATC 60.430 66.667 12.54 13.47 42.68 2.75
544 545 3.983494 CCCGGATCGCGCTCAGAT 61.983 66.667 12.54 0.00 0.00 2.90
546 547 3.905705 GATCCCGGATCGCGCTCAG 62.906 68.421 11.76 7.74 29.12 3.35
547 548 3.978491 GATCCCGGATCGCGCTCA 61.978 66.667 11.76 0.00 29.12 4.26
548 549 4.726351 GGATCCCGGATCGCGCTC 62.726 72.222 19.28 0.00 39.72 5.03
930 931 0.672401 GGCGGTGGAACTCGAAATCA 60.672 55.000 0.00 0.00 36.74 2.57
963 976 3.489229 GCTTCGAAACTTGGCTTCTGTTT 60.489 43.478 0.00 0.00 36.73 2.83
967 980 1.239347 GGCTTCGAAACTTGGCTTCT 58.761 50.000 0.00 0.00 0.00 2.85
974 987 2.135933 CTCTTGTCGGCTTCGAAACTT 58.864 47.619 0.00 0.00 45.10 2.66
975 988 1.605712 CCTCTTGTCGGCTTCGAAACT 60.606 52.381 0.00 0.00 45.10 2.66
976 989 0.790814 CCTCTTGTCGGCTTCGAAAC 59.209 55.000 0.00 0.00 45.10 2.78
977 990 0.677288 TCCTCTTGTCGGCTTCGAAA 59.323 50.000 0.00 0.00 45.10 3.46
978 991 0.895530 ATCCTCTTGTCGGCTTCGAA 59.104 50.000 0.00 0.00 45.10 3.71
979 992 0.456221 GATCCTCTTGTCGGCTTCGA 59.544 55.000 0.00 0.00 41.01 3.71
980 993 0.528684 GGATCCTCTTGTCGGCTTCG 60.529 60.000 3.84 0.00 0.00 3.79
981 994 0.537188 TGGATCCTCTTGTCGGCTTC 59.463 55.000 14.23 0.00 0.00 3.86
982 995 1.134280 CATGGATCCTCTTGTCGGCTT 60.134 52.381 14.23 0.00 0.00 4.35
983 996 0.467384 CATGGATCCTCTTGTCGGCT 59.533 55.000 14.23 0.00 0.00 5.52
984 997 0.533755 CCATGGATCCTCTTGTCGGC 60.534 60.000 14.23 0.00 0.00 5.54
985 998 0.533755 GCCATGGATCCTCTTGTCGG 60.534 60.000 18.40 4.01 0.00 4.79
986 999 0.533755 GGCCATGGATCCTCTTGTCG 60.534 60.000 18.40 0.00 0.00 4.35
987 1000 0.179006 GGGCCATGGATCCTCTTGTC 60.179 60.000 18.40 0.18 0.00 3.18
988 1001 1.925888 GGGCCATGGATCCTCTTGT 59.074 57.895 18.40 0.00 0.00 3.16
989 1002 1.228063 CGGGCCATGGATCCTCTTG 60.228 63.158 18.40 8.02 0.00 3.02
990 1003 0.399949 TACGGGCCATGGATCCTCTT 60.400 55.000 18.40 5.79 0.00 2.85
997 1010 2.994699 CTTGGTACGGGCCATGGA 59.005 61.111 18.40 0.00 38.48 3.41
1135 1182 6.183360 CGATTCAATTTCAAACAGATCGGAGA 60.183 38.462 0.00 0.00 45.75 3.71
1151 1202 4.414852 CCTGAAAACGCATCGATTCAATT 58.585 39.130 0.00 0.00 36.50 2.32
1152 1203 3.731867 GCCTGAAAACGCATCGATTCAAT 60.732 43.478 0.00 0.00 36.50 2.57
1164 1255 1.172180 TTCCTGGCAGCCTGAAAACG 61.172 55.000 19.69 2.70 0.00 3.60
1518 1615 0.106015 GGGGATGGGATTGGTCTTGG 60.106 60.000 0.00 0.00 0.00 3.61
1520 1617 0.929244 CTGGGGATGGGATTGGTCTT 59.071 55.000 0.00 0.00 0.00 3.01
1578 1690 7.216317 CGATCTAAAACGACAATTGAATCAACC 59.784 37.037 13.59 0.00 0.00 3.77
1587 1699 7.647907 ACTAACACGATCTAAAACGACAATT 57.352 32.000 0.00 0.00 0.00 2.32
1588 1700 7.647907 AACTAACACGATCTAAAACGACAAT 57.352 32.000 0.00 0.00 0.00 2.71
1589 1701 7.467557 AAACTAACACGATCTAAAACGACAA 57.532 32.000 0.00 0.00 0.00 3.18
1592 1707 6.479660 ACCAAAACTAACACGATCTAAAACGA 59.520 34.615 0.00 0.00 0.00 3.85
1663 1782 5.758924 TCGATAATGGTCGATCAACACTAG 58.241 41.667 0.60 0.00 44.87 2.57
1698 1817 4.563580 GGCATCAACTTCAGAGTACCTCAA 60.564 45.833 0.00 0.00 34.21 3.02
1708 1827 2.486472 ACAGGAGGCATCAACTTCAG 57.514 50.000 0.00 0.00 0.00 3.02
1751 1922 4.179926 TCACAAGAGGATTCAGAGAACG 57.820 45.455 0.00 0.00 0.00 3.95
1796 1968 5.011090 TCTATCCACCACAGAGAAAATCG 57.989 43.478 0.00 0.00 0.00 3.34
1811 1983 1.764723 CAGCCACATGACCTCTATCCA 59.235 52.381 0.00 0.00 0.00 3.41
1823 1995 2.363306 TCAAAGAACCACAGCCACAT 57.637 45.000 0.00 0.00 0.00 3.21
1881 2062 2.728007 ACAGAGATCACCATCACGAGA 58.272 47.619 0.00 0.00 0.00 4.04
1936 2407 4.104102 TCCAGTTAAGAAACAGGATGGTGT 59.896 41.667 0.00 0.00 43.97 4.16
1992 2463 3.179830 AGATGAGTACGTTTTGCGCTAG 58.820 45.455 9.73 0.00 46.11 3.42
2003 2474 6.556212 ACTCAAACTGATGTAGATGAGTACG 58.444 40.000 13.96 0.00 45.84 3.67
2020 2491 7.865707 ACTGATGTCAAATGAGTTACTCAAAC 58.134 34.615 19.42 14.36 44.04 2.93
2021 2492 8.450578 AACTGATGTCAAATGAGTTACTCAAA 57.549 30.769 19.42 2.86 44.04 2.69
2022 2493 7.714813 TGAACTGATGTCAAATGAGTTACTCAA 59.285 33.333 19.42 1.73 44.04 3.02
2023 2494 7.216494 TGAACTGATGTCAAATGAGTTACTCA 58.784 34.615 17.87 17.87 44.99 3.41
2024 2495 7.658179 TGAACTGATGTCAAATGAGTTACTC 57.342 36.000 5.27 5.27 0.00 2.59
2025 2496 7.716998 ACTTGAACTGATGTCAAATGAGTTACT 59.283 33.333 0.00 0.00 0.00 2.24
2026 2497 7.865707 ACTTGAACTGATGTCAAATGAGTTAC 58.134 34.615 0.00 0.00 0.00 2.50
2027 2498 9.554395 TTACTTGAACTGATGTCAAATGAGTTA 57.446 29.630 0.00 0.00 0.00 2.24
2028 2499 6.949352 ACTTGAACTGATGTCAAATGAGTT 57.051 33.333 0.00 0.00 0.00 3.01
2048 2519 6.494835 AGGAAGGCAACATCTCAAATTTACTT 59.505 34.615 0.00 0.00 41.41 2.24
2054 2525 4.410099 TGAAGGAAGGCAACATCTCAAAT 58.590 39.130 0.00 0.00 41.41 2.32
2060 2531 3.359950 AGGATTGAAGGAAGGCAACATC 58.640 45.455 0.00 0.00 41.41 3.06
2086 2557 1.203052 CAACCAAGCAGCCGAAATGAT 59.797 47.619 0.00 0.00 0.00 2.45
2122 2593 6.602009 AGATTTTCCTCGTTTTATTTCCGGAT 59.398 34.615 4.15 0.00 0.00 4.18
2125 2596 7.302524 TCAAGATTTTCCTCGTTTTATTTCCG 58.697 34.615 0.00 0.00 0.00 4.30
2126 2597 9.471084 TTTCAAGATTTTCCTCGTTTTATTTCC 57.529 29.630 0.00 0.00 0.00 3.13
2135 2606 4.100279 AGGGTTTCAAGATTTTCCTCGT 57.900 40.909 0.00 0.00 0.00 4.18
2183 2659 5.227569 TCAGAATTTTGACTGGACAGCTA 57.772 39.130 0.00 0.00 35.20 3.32
2227 2780 2.661195 GTGTTGATTTGGCATAACACGC 59.339 45.455 16.25 3.19 42.08 5.34
2262 2815 4.347607 AGCCAAATTCAGCTAATTCAGGT 58.652 39.130 0.50 8.10 36.76 4.00
2353 2914 3.570540 TCTCCATCTCTGTTCGATCCAT 58.429 45.455 0.00 0.00 0.00 3.41
2384 2945 8.008513 ACTCTGTCGTGTATTAATGGATTAGT 57.991 34.615 0.00 0.00 0.00 2.24
2441 3002 4.065214 ACCCATCAATCCAAAGGAACAT 57.935 40.909 0.00 0.00 34.34 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.