Multiple sequence alignment - TraesCS7B01G341400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G341400 chr7B 100.000 3169 0 0 1 3169 596517127 596513959 0.000000e+00 5853.0
1 TraesCS7B01G341400 chr7B 96.247 1359 39 7 653 2010 596539301 596537954 0.000000e+00 2217.0
2 TraesCS7B01G341400 chr7B 92.927 1117 65 11 1857 2966 596502112 596501003 0.000000e+00 1613.0
3 TraesCS7B01G341400 chr7B 96.585 820 24 3 2151 2966 596537936 596537117 0.000000e+00 1356.0
4 TraesCS7B01G341400 chr7B 86.095 1014 101 20 813 1807 595882367 595881375 0.000000e+00 1055.0
5 TraesCS7B01G341400 chr7B 82.437 632 60 21 1198 1808 595993706 595993105 3.650000e-139 505.0
6 TraesCS7B01G341400 chr7B 93.814 194 12 0 1 194 596539768 596539575 3.090000e-75 292.0
7 TraesCS7B01G341400 chr7B 82.558 258 34 10 399 653 68832149 68832398 1.910000e-52 217.0
8 TraesCS7B01G341400 chr7B 81.250 272 39 10 388 655 75588716 75588453 3.200000e-50 209.0
9 TraesCS7B01G341400 chr7D 92.169 1162 73 8 653 1810 551604922 551603775 0.000000e+00 1626.0
10 TraesCS7B01G341400 chr7D 92.103 1165 71 9 653 1810 551501001 551499851 0.000000e+00 1622.0
11 TraesCS7B01G341400 chr7D 92.000 825 54 11 2151 2966 551499603 551498782 0.000000e+00 1147.0
12 TraesCS7B01G341400 chr7D 91.981 823 52 8 2151 2966 551603494 551602679 0.000000e+00 1142.0
13 TraesCS7B01G341400 chr7D 85.573 1012 106 19 814 1807 551000535 550999546 0.000000e+00 1024.0
14 TraesCS7B01G341400 chr7D 82.994 835 90 29 884 1696 551928641 551927837 0.000000e+00 708.0
15 TraesCS7B01G341400 chr7D 78.017 696 119 19 2202 2884 551408608 551407934 1.060000e-109 407.0
16 TraesCS7B01G341400 chr7D 77.810 694 118 20 2202 2882 551592130 551591460 2.290000e-106 396.0
17 TraesCS7B01G341400 chr7D 80.381 525 73 19 1295 1808 551114374 551113869 3.860000e-99 372.0
18 TraesCS7B01G341400 chr7D 92.553 188 14 0 1 188 551504094 551503907 1.450000e-68 270.0
19 TraesCS7B01G341400 chr7D 91.489 188 16 0 1 188 551608022 551607835 3.140000e-65 259.0
20 TraesCS7B01G341400 chr7D 85.446 213 27 4 2201 2410 551110742 551110953 5.320000e-53 219.0
21 TraesCS7B01G341400 chr7D 76.692 399 70 13 274 656 136704336 136703945 1.930000e-47 200.0
22 TraesCS7B01G341400 chr7D 95.181 83 4 0 1861 1943 551499736 551499654 7.130000e-27 132.0
23 TraesCS7B01G341400 chr7D 90.816 98 8 1 2009 2105 58788034 58787937 2.570000e-26 130.0
24 TraesCS7B01G341400 chr7D 89.216 102 10 1 2009 2109 632327988 632327887 3.320000e-25 126.0
25 TraesCS7B01G341400 chr7D 90.196 51 3 2 224 274 551501047 551500999 7.340000e-07 65.8
26 TraesCS7B01G341400 chr7D 100.000 33 0 0 242 274 551604952 551604920 9.490000e-06 62.1
27 TraesCS7B01G341400 chr7A 93.592 952 43 6 860 1810 637158006 637157072 0.000000e+00 1404.0
28 TraesCS7B01G341400 chr7A 89.342 882 78 7 653 1532 637078289 637077422 0.000000e+00 1094.0
29 TraesCS7B01G341400 chr7A 91.368 753 58 6 2218 2963 637151647 637150895 0.000000e+00 1024.0
30 TraesCS7B01G341400 chr7A 80.942 955 104 47 884 1803 637337031 637336120 0.000000e+00 684.0
31 TraesCS7B01G341400 chr7A 88.000 275 17 4 1 274 637078546 637078287 8.540000e-81 311.0
32 TraesCS7B01G341400 chr7A 94.681 188 10 0 1 188 637172762 637172575 3.090000e-75 292.0
33 TraesCS7B01G341400 chr7A 89.815 216 18 4 653 867 637172378 637172166 1.120000e-69 274.0
34 TraesCS7B01G341400 chr7A 93.377 151 8 1 1860 2010 637151994 637151846 4.110000e-54 222.0
35 TraesCS7B01G341400 chr7A 88.235 102 11 1 2009 2109 735412104 735412205 1.540000e-23 121.0
36 TraesCS7B01G341400 chr3A 85.714 385 34 11 272 640 733031187 733030808 1.380000e-103 387.0
37 TraesCS7B01G341400 chr5B 96.651 209 6 1 2962 3169 70626814 70627022 2.340000e-91 346.0
38 TraesCS7B01G341400 chr5B 96.098 205 8 0 2965 3169 339459096 339459300 5.060000e-88 335.0
39 TraesCS7B01G341400 chr5B 86.598 194 20 2 1 188 318284471 318284278 3.200000e-50 209.0
40 TraesCS7B01G341400 chr6B 96.569 204 7 0 2966 3169 6480933 6480730 3.920000e-89 339.0
41 TraesCS7B01G341400 chr6B 96.135 207 8 0 2963 3169 564924582 564924376 3.920000e-89 339.0
42 TraesCS7B01G341400 chr6B 89.000 100 9 2 2009 2107 200777229 200777327 4.290000e-24 122.0
43 TraesCS7B01G341400 chr3B 96.569 204 7 0 2966 3169 197875970 197876173 3.920000e-89 339.0
44 TraesCS7B01G341400 chr2B 96.569 204 7 0 2966 3169 125265030 125264827 3.920000e-89 339.0
45 TraesCS7B01G341400 chr4B 95.261 211 10 0 2959 3169 489300322 489300112 5.060000e-88 335.0
46 TraesCS7B01G341400 chr4B 96.078 204 8 0 2966 3169 61890685 61890482 1.820000e-87 333.0
47 TraesCS7B01G341400 chr1B 96.078 204 8 0 2966 3169 675392014 675391811 1.820000e-87 333.0
48 TraesCS7B01G341400 chr1D 88.710 186 20 1 1 185 50915491 50915676 3.180000e-55 226.0
49 TraesCS7B01G341400 chr5A 87.895 190 16 5 1 188 372155523 372155707 1.910000e-52 217.0
50 TraesCS7B01G341400 chr5A 86.585 164 18 4 651 814 320214257 320214416 9.030000e-41 178.0
51 TraesCS7B01G341400 chr5A 75.244 307 60 8 270 562 53326964 53326660 7.130000e-27 132.0
52 TraesCS7B01G341400 chr5A 96.364 55 2 0 599 653 53326653 53326599 1.210000e-14 91.6
53 TraesCS7B01G341400 chr6D 77.083 384 58 22 291 653 17240375 17240001 8.970000e-46 195.0
54 TraesCS7B01G341400 chr5D 85.405 185 21 2 1 185 280393189 280393011 1.500000e-43 187.0
55 TraesCS7B01G341400 chr5D 89.796 98 10 0 2009 2106 65990491 65990588 3.320000e-25 126.0
56 TraesCS7B01G341400 chr4A 79.923 259 42 8 399 655 133616009 133616259 6.980000e-42 182.0
57 TraesCS7B01G341400 chr4A 87.179 156 15 4 651 806 47750329 47750179 4.200000e-39 172.0
58 TraesCS7B01G341400 chr4A 89.691 97 10 0 2009 2105 590126648 590126552 1.190000e-24 124.0
59 TraesCS7B01G341400 chr6A 88.158 152 15 3 651 802 609592964 609593112 9.030000e-41 178.0
60 TraesCS7B01G341400 chr3D 88.158 152 15 3 651 802 87926013 87926161 9.030000e-41 178.0
61 TraesCS7B01G341400 chr3D 89.583 96 10 0 2010 2105 403741742 403741647 4.290000e-24 122.0
62 TraesCS7B01G341400 chr4D 87.500 152 16 3 651 802 386984681 386984829 4.200000e-39 172.0
63 TraesCS7B01G341400 chrUn 87.963 108 12 1 1999 2106 21636779 21636673 3.320000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G341400 chr7B 596513959 596517127 3168 True 5853.000000 5853 100.000000 1 3169 1 chr7B.!!$R5 3168
1 TraesCS7B01G341400 chr7B 596501003 596502112 1109 True 1613.000000 1613 92.927000 1857 2966 1 chr7B.!!$R4 1109
2 TraesCS7B01G341400 chr7B 596537117 596539768 2651 True 1288.333333 2217 95.548667 1 2966 3 chr7B.!!$R6 2965
3 TraesCS7B01G341400 chr7B 595881375 595882367 992 True 1055.000000 1055 86.095000 813 1807 1 chr7B.!!$R2 994
4 TraesCS7B01G341400 chr7B 595993105 595993706 601 True 505.000000 505 82.437000 1198 1808 1 chr7B.!!$R3 610
5 TraesCS7B01G341400 chr7D 550999546 551000535 989 True 1024.000000 1024 85.573000 814 1807 1 chr7D.!!$R3 993
6 TraesCS7B01G341400 chr7D 551602679 551608022 5343 True 772.275000 1626 93.909750 1 2966 4 chr7D.!!$R10 2965
7 TraesCS7B01G341400 chr7D 551927837 551928641 804 True 708.000000 708 82.994000 884 1696 1 chr7D.!!$R7 812
8 TraesCS7B01G341400 chr7D 551498782 551504094 5312 True 647.360000 1622 92.406600 1 2966 5 chr7D.!!$R9 2965
9 TraesCS7B01G341400 chr7D 551407934 551408608 674 True 407.000000 407 78.017000 2202 2884 1 chr7D.!!$R5 682
10 TraesCS7B01G341400 chr7D 551591460 551592130 670 True 396.000000 396 77.810000 2202 2882 1 chr7D.!!$R6 680
11 TraesCS7B01G341400 chr7D 551113869 551114374 505 True 372.000000 372 80.381000 1295 1808 1 chr7D.!!$R4 513
12 TraesCS7B01G341400 chr7A 637157072 637158006 934 True 1404.000000 1404 93.592000 860 1810 1 chr7A.!!$R1 950
13 TraesCS7B01G341400 chr7A 637077422 637078546 1124 True 702.500000 1094 88.671000 1 1532 2 chr7A.!!$R3 1531
14 TraesCS7B01G341400 chr7A 637336120 637337031 911 True 684.000000 684 80.942000 884 1803 1 chr7A.!!$R2 919
15 TraesCS7B01G341400 chr7A 637150895 637151994 1099 True 623.000000 1024 92.372500 1860 2963 2 chr7A.!!$R4 1103
16 TraesCS7B01G341400 chr7A 637172166 637172762 596 True 283.000000 292 92.248000 1 867 2 chr7A.!!$R5 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 3530 0.034960 GGTTTTCTCCCCAGCCTCTC 60.035 60.0 0.0 0.0 0.00 3.20 F
1480 4558 0.031716 ATGCAGGTAGAGAGGGCAGA 60.032 55.0 0.0 0.0 37.96 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 5128 1.008938 ACAGAGCCCAATAGAGTCCCT 59.991 52.381 0.0 0.0 0.0 4.20 R
3078 6405 0.178984 GGGGTTTCGGGTCCTCAAAA 60.179 55.000 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.536766 TGAAGCAAATGAAGTGGCTCG 59.463 47.619 0.00 0.00 35.11 5.03
202 204 6.293713 TGTAAATGACACATACACACACAC 57.706 37.500 0.00 0.00 31.20 3.82
204 206 4.811555 AATGACACATACACACACACAC 57.188 40.909 0.00 0.00 0.00 3.82
205 207 3.252974 TGACACATACACACACACACA 57.747 42.857 0.00 0.00 0.00 3.72
206 208 2.933260 TGACACATACACACACACACAC 59.067 45.455 0.00 0.00 0.00 3.82
207 209 2.933260 GACACATACACACACACACACA 59.067 45.455 0.00 0.00 0.00 3.72
208 210 2.675844 ACACATACACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
219 2922 4.990426 CACACACACACACATTATCTGAGA 59.010 41.667 0.00 0.00 0.00 3.27
224 2927 8.171196 CACACACACACATTATCTGAGAAATAC 58.829 37.037 0.00 0.00 0.00 1.89
275 3327 9.722317 ATAGATATACTCCCTCCATTCTTAAGG 57.278 37.037 1.85 0.00 0.00 2.69
276 3328 4.984146 ATACTCCCTCCATTCTTAAGGC 57.016 45.455 1.85 0.00 0.00 4.35
277 3329 1.847088 ACTCCCTCCATTCTTAAGGCC 59.153 52.381 1.85 0.00 0.00 5.19
278 3330 2.131023 CTCCCTCCATTCTTAAGGCCT 58.869 52.381 0.00 0.00 0.00 5.19
279 3331 2.511637 CTCCCTCCATTCTTAAGGCCTT 59.488 50.000 24.18 24.18 0.00 4.35
280 3332 2.242196 TCCCTCCATTCTTAAGGCCTTG 59.758 50.000 28.77 12.58 0.00 3.61
281 3333 2.024941 CCCTCCATTCTTAAGGCCTTGT 60.025 50.000 28.77 4.97 0.00 3.16
282 3334 3.564352 CCCTCCATTCTTAAGGCCTTGTT 60.564 47.826 28.77 4.09 0.00 2.83
283 3335 4.089361 CCTCCATTCTTAAGGCCTTGTTT 58.911 43.478 28.77 3.65 0.00 2.83
284 3336 4.082026 CCTCCATTCTTAAGGCCTTGTTTG 60.082 45.833 28.77 16.47 0.00 2.93
285 3337 3.831911 TCCATTCTTAAGGCCTTGTTTGG 59.168 43.478 28.77 23.50 0.00 3.28
286 3338 3.578282 CCATTCTTAAGGCCTTGTTTGGT 59.422 43.478 28.77 6.77 0.00 3.67
287 3339 4.770010 CCATTCTTAAGGCCTTGTTTGGTA 59.230 41.667 28.77 2.48 0.00 3.25
288 3340 5.105756 CCATTCTTAAGGCCTTGTTTGGTAG 60.106 44.000 28.77 12.54 0.00 3.18
289 3341 3.418047 TCTTAAGGCCTTGTTTGGTAGC 58.582 45.455 28.77 0.00 0.00 3.58
290 3342 2.961531 TAAGGCCTTGTTTGGTAGCA 57.038 45.000 28.77 0.00 0.00 3.49
291 3343 2.080654 AAGGCCTTGTTTGGTAGCAA 57.919 45.000 19.73 2.54 0.00 3.91
292 3344 1.620822 AGGCCTTGTTTGGTAGCAAG 58.379 50.000 0.00 0.00 41.08 4.01
296 3348 1.256812 CTTGTTTGGTAGCAAGGGGG 58.743 55.000 7.51 0.00 38.61 5.40
297 3349 0.854218 TTGTTTGGTAGCAAGGGGGA 59.146 50.000 7.51 0.00 0.00 4.81
298 3350 0.404040 TGTTTGGTAGCAAGGGGGAG 59.596 55.000 7.51 0.00 0.00 4.30
299 3351 0.696501 GTTTGGTAGCAAGGGGGAGA 59.303 55.000 7.51 0.00 0.00 3.71
300 3352 1.074889 GTTTGGTAGCAAGGGGGAGAA 59.925 52.381 7.51 0.00 0.00 2.87
301 3353 1.451449 TTGGTAGCAAGGGGGAGAAA 58.549 50.000 2.54 0.00 0.00 2.52
302 3354 1.681229 TGGTAGCAAGGGGGAGAAAT 58.319 50.000 0.00 0.00 0.00 2.17
303 3355 1.564348 TGGTAGCAAGGGGGAGAAATC 59.436 52.381 0.00 0.00 0.00 2.17
304 3356 1.133761 GGTAGCAAGGGGGAGAAATCC 60.134 57.143 0.00 0.00 0.00 3.01
312 3364 3.426917 GGAGAAATCCCAGGGCCA 58.573 61.111 6.18 0.00 0.00 5.36
313 3365 1.076705 GGAGAAATCCCAGGGCCAC 60.077 63.158 6.18 0.00 0.00 5.01
314 3366 1.691219 GAGAAATCCCAGGGCCACA 59.309 57.895 6.18 0.00 0.00 4.17
315 3367 0.039618 GAGAAATCCCAGGGCCACAA 59.960 55.000 6.18 0.00 0.00 3.33
316 3368 0.040204 AGAAATCCCAGGGCCACAAG 59.960 55.000 6.18 0.00 0.00 3.16
317 3369 1.607801 GAAATCCCAGGGCCACAAGC 61.608 60.000 6.18 0.00 42.60 4.01
337 3389 2.685850 CCCTAGGGGTAGTTTTCACG 57.314 55.000 21.44 0.00 38.25 4.35
338 3390 1.904537 CCCTAGGGGTAGTTTTCACGT 59.095 52.381 21.44 0.00 38.25 4.49
339 3391 2.354403 CCCTAGGGGTAGTTTTCACGTG 60.354 54.545 21.44 9.94 38.25 4.49
340 3392 2.344025 CTAGGGGTAGTTTTCACGTGC 58.656 52.381 11.67 0.00 0.00 5.34
341 3393 0.470766 AGGGGTAGTTTTCACGTGCA 59.529 50.000 11.67 0.00 0.00 4.57
342 3394 0.589708 GGGGTAGTTTTCACGTGCAC 59.410 55.000 11.67 6.82 0.00 4.57
343 3395 1.301423 GGGTAGTTTTCACGTGCACA 58.699 50.000 18.64 0.00 0.00 4.57
344 3396 1.877443 GGGTAGTTTTCACGTGCACAT 59.123 47.619 18.64 0.00 0.00 3.21
345 3397 2.292292 GGGTAGTTTTCACGTGCACATT 59.708 45.455 18.64 0.00 0.00 2.71
346 3398 3.499157 GGGTAGTTTTCACGTGCACATTA 59.501 43.478 18.64 0.00 0.00 1.90
347 3399 4.378046 GGGTAGTTTTCACGTGCACATTAG 60.378 45.833 18.64 2.44 0.00 1.73
348 3400 4.449743 GGTAGTTTTCACGTGCACATTAGA 59.550 41.667 18.64 5.54 0.00 2.10
349 3401 5.121768 GGTAGTTTTCACGTGCACATTAGAT 59.878 40.000 18.64 0.00 0.00 1.98
350 3402 5.689383 AGTTTTCACGTGCACATTAGATT 57.311 34.783 18.64 0.00 0.00 2.40
351 3403 5.689819 AGTTTTCACGTGCACATTAGATTC 58.310 37.500 18.64 0.70 0.00 2.52
352 3404 4.678509 TTTCACGTGCACATTAGATTCC 57.321 40.909 18.64 0.00 0.00 3.01
353 3405 2.627945 TCACGTGCACATTAGATTCCC 58.372 47.619 18.64 0.00 0.00 3.97
354 3406 1.670811 CACGTGCACATTAGATTCCCC 59.329 52.381 18.64 0.00 0.00 4.81
355 3407 1.280710 ACGTGCACATTAGATTCCCCA 59.719 47.619 18.64 0.00 0.00 4.96
356 3408 2.290641 ACGTGCACATTAGATTCCCCAA 60.291 45.455 18.64 0.00 0.00 4.12
357 3409 2.355756 CGTGCACATTAGATTCCCCAAG 59.644 50.000 18.64 0.00 0.00 3.61
358 3410 2.689983 GTGCACATTAGATTCCCCAAGG 59.310 50.000 13.17 0.00 0.00 3.61
359 3411 2.580322 TGCACATTAGATTCCCCAAGGA 59.420 45.455 0.00 0.00 41.88 3.36
371 3423 4.007581 TCCCCAAGGAATCTCTATCACA 57.992 45.455 0.00 0.00 40.08 3.58
372 3424 3.969976 TCCCCAAGGAATCTCTATCACAG 59.030 47.826 0.00 0.00 40.08 3.66
373 3425 3.495806 CCCCAAGGAATCTCTATCACAGC 60.496 52.174 0.00 0.00 33.47 4.40
374 3426 3.495806 CCCAAGGAATCTCTATCACAGCC 60.496 52.174 0.00 0.00 0.00 4.85
375 3427 3.388308 CAAGGAATCTCTATCACAGCCG 58.612 50.000 0.00 0.00 0.00 5.52
376 3428 1.342819 AGGAATCTCTATCACAGCCGC 59.657 52.381 0.00 0.00 0.00 6.53
377 3429 1.606737 GGAATCTCTATCACAGCCGCC 60.607 57.143 0.00 0.00 0.00 6.13
378 3430 1.069204 GAATCTCTATCACAGCCGCCA 59.931 52.381 0.00 0.00 0.00 5.69
379 3431 0.678395 ATCTCTATCACAGCCGCCAG 59.322 55.000 0.00 0.00 0.00 4.85
380 3432 0.684479 TCTCTATCACAGCCGCCAGT 60.684 55.000 0.00 0.00 0.00 4.00
381 3433 0.529337 CTCTATCACAGCCGCCAGTG 60.529 60.000 7.13 7.13 37.10 3.66
382 3434 1.522355 CTATCACAGCCGCCAGTGG 60.522 63.158 4.20 4.20 36.43 4.00
383 3435 2.930385 CTATCACAGCCGCCAGTGGG 62.930 65.000 12.15 0.59 36.43 4.61
402 3454 3.258225 CGAAGCGTAGATGTGGAGG 57.742 57.895 0.00 0.00 0.00 4.30
403 3455 0.738975 CGAAGCGTAGATGTGGAGGA 59.261 55.000 0.00 0.00 0.00 3.71
404 3456 1.338337 CGAAGCGTAGATGTGGAGGAT 59.662 52.381 0.00 0.00 0.00 3.24
405 3457 2.748605 GAAGCGTAGATGTGGAGGATG 58.251 52.381 0.00 0.00 0.00 3.51
406 3458 1.043816 AGCGTAGATGTGGAGGATGG 58.956 55.000 0.00 0.00 0.00 3.51
407 3459 0.601311 GCGTAGATGTGGAGGATGGC 60.601 60.000 0.00 0.00 0.00 4.40
408 3460 1.043816 CGTAGATGTGGAGGATGGCT 58.956 55.000 0.00 0.00 0.00 4.75
409 3461 1.269988 CGTAGATGTGGAGGATGGCTG 60.270 57.143 0.00 0.00 0.00 4.85
410 3462 1.071385 GTAGATGTGGAGGATGGCTGG 59.929 57.143 0.00 0.00 0.00 4.85
411 3463 1.150081 GATGTGGAGGATGGCTGGG 59.850 63.158 0.00 0.00 0.00 4.45
412 3464 2.349100 GATGTGGAGGATGGCTGGGG 62.349 65.000 0.00 0.00 0.00 4.96
413 3465 2.692368 GTGGAGGATGGCTGGGGA 60.692 66.667 0.00 0.00 0.00 4.81
414 3466 2.367377 TGGAGGATGGCTGGGGAG 60.367 66.667 0.00 0.00 0.00 4.30
415 3467 2.367512 GGAGGATGGCTGGGGAGT 60.368 66.667 0.00 0.00 0.00 3.85
416 3468 2.750657 GGAGGATGGCTGGGGAGTG 61.751 68.421 0.00 0.00 0.00 3.51
417 3469 2.693864 AGGATGGCTGGGGAGTGG 60.694 66.667 0.00 0.00 0.00 4.00
418 3470 4.512914 GGATGGCTGGGGAGTGGC 62.513 72.222 0.00 0.00 0.00 5.01
419 3471 3.415087 GATGGCTGGGGAGTGGCT 61.415 66.667 0.00 0.00 0.00 4.75
420 3472 2.943265 ATGGCTGGGGAGTGGCTT 60.943 61.111 0.00 0.00 0.00 4.35
421 3473 2.900671 GATGGCTGGGGAGTGGCTTC 62.901 65.000 0.00 0.00 0.00 3.86
422 3474 4.432741 GGCTGGGGAGTGGCTTCC 62.433 72.222 0.62 0.62 36.46 3.46
423 3475 3.650950 GCTGGGGAGTGGCTTCCA 61.651 66.667 10.13 0.00 39.09 3.53
424 3476 3.170362 CTGGGGAGTGGCTTCCAA 58.830 61.111 10.13 0.00 39.09 3.53
425 3477 1.303643 CTGGGGAGTGGCTTCCAAC 60.304 63.158 10.13 4.07 39.09 3.77
426 3478 1.774217 TGGGGAGTGGCTTCCAACT 60.774 57.895 10.13 0.00 39.09 3.16
427 3479 1.002011 GGGGAGTGGCTTCCAACTC 60.002 63.158 10.13 2.66 39.09 3.01
428 3480 1.002011 GGGAGTGGCTTCCAACTCC 60.002 63.158 18.14 18.14 43.97 3.85
429 3481 1.761174 GGAGTGGCTTCCAACTCCA 59.239 57.895 19.96 0.00 44.05 3.86
430 3482 0.329596 GGAGTGGCTTCCAACTCCAT 59.670 55.000 19.96 0.00 44.05 3.41
431 3483 1.680249 GGAGTGGCTTCCAACTCCATC 60.680 57.143 19.96 3.76 44.05 3.51
432 3484 0.036010 AGTGGCTTCCAACTCCATCG 60.036 55.000 0.00 0.00 34.18 3.84
433 3485 1.377202 TGGCTTCCAACTCCATCGC 60.377 57.895 0.00 0.00 0.00 4.58
434 3486 2.115291 GGCTTCCAACTCCATCGCC 61.115 63.158 0.00 0.00 0.00 5.54
435 3487 1.377202 GCTTCCAACTCCATCGCCA 60.377 57.895 0.00 0.00 0.00 5.69
436 3488 1.372087 GCTTCCAACTCCATCGCCAG 61.372 60.000 0.00 0.00 0.00 4.85
437 3489 0.036010 CTTCCAACTCCATCGCCAGT 60.036 55.000 0.00 0.00 0.00 4.00
438 3490 0.400213 TTCCAACTCCATCGCCAGTT 59.600 50.000 0.00 0.00 32.87 3.16
439 3491 0.400213 TCCAACTCCATCGCCAGTTT 59.600 50.000 0.00 0.00 30.06 2.66
440 3492 1.202879 TCCAACTCCATCGCCAGTTTT 60.203 47.619 0.00 0.00 30.06 2.43
441 3493 1.613437 CCAACTCCATCGCCAGTTTTT 59.387 47.619 0.00 0.00 30.06 1.94
467 3519 4.148645 GCGAGCGCGGGTTTTCTC 62.149 66.667 12.86 3.40 38.16 2.87
468 3520 3.488090 CGAGCGCGGGTTTTCTCC 61.488 66.667 8.83 0.00 0.00 3.71
469 3521 3.125573 GAGCGCGGGTTTTCTCCC 61.126 66.667 8.83 0.00 43.78 4.30
470 3522 4.717313 AGCGCGGGTTTTCTCCCC 62.717 66.667 8.83 0.00 44.32 4.81
472 3524 2.746277 CGCGGGTTTTCTCCCCAG 60.746 66.667 0.00 0.00 44.32 4.45
473 3525 3.062466 GCGGGTTTTCTCCCCAGC 61.062 66.667 0.00 0.00 44.32 4.85
474 3526 2.361230 CGGGTTTTCTCCCCAGCC 60.361 66.667 0.00 0.00 44.32 4.85
475 3527 2.907179 CGGGTTTTCTCCCCAGCCT 61.907 63.158 0.00 0.00 44.32 4.58
476 3528 1.000771 GGGTTTTCTCCCCAGCCTC 60.001 63.158 0.00 0.00 42.15 4.70
477 3529 1.501654 GGGTTTTCTCCCCAGCCTCT 61.502 60.000 0.00 0.00 42.15 3.69
478 3530 0.034960 GGTTTTCTCCCCAGCCTCTC 60.035 60.000 0.00 0.00 0.00 3.20
479 3531 0.391793 GTTTTCTCCCCAGCCTCTCG 60.392 60.000 0.00 0.00 0.00 4.04
480 3532 0.544357 TTTTCTCCCCAGCCTCTCGA 60.544 55.000 0.00 0.00 0.00 4.04
481 3533 0.972983 TTTCTCCCCAGCCTCTCGAG 60.973 60.000 5.93 5.93 0.00 4.04
491 3543 2.206635 CCTCTCGAGGCATGGAAGT 58.793 57.895 13.56 0.00 42.44 3.01
492 3544 0.103937 CCTCTCGAGGCATGGAAGTC 59.896 60.000 13.56 0.00 42.44 3.01
493 3545 1.110442 CTCTCGAGGCATGGAAGTCT 58.890 55.000 13.56 0.00 0.00 3.24
494 3546 1.066908 CTCTCGAGGCATGGAAGTCTC 59.933 57.143 13.56 0.00 36.90 3.36
496 3548 4.116878 GAGGCATGGAAGTCTCGC 57.883 61.111 0.00 0.00 29.59 5.03
497 3549 1.522580 GAGGCATGGAAGTCTCGCC 60.523 63.158 0.00 0.00 43.31 5.54
498 3550 2.586792 GGCATGGAAGTCTCGCCT 59.413 61.111 0.00 0.00 39.73 5.52
499 3551 1.817099 GGCATGGAAGTCTCGCCTG 60.817 63.158 0.00 0.00 39.73 4.85
500 3552 2.467826 GCATGGAAGTCTCGCCTGC 61.468 63.158 0.00 0.00 0.00 4.85
501 3553 2.169789 CATGGAAGTCTCGCCTGCG 61.170 63.158 4.92 4.92 41.35 5.18
502 3554 3.376935 ATGGAAGTCTCGCCTGCGG 62.377 63.158 12.06 2.79 40.25 5.69
503 3555 3.760035 GGAAGTCTCGCCTGCGGA 61.760 66.667 12.06 5.22 40.25 5.54
504 3556 2.261671 GAAGTCTCGCCTGCGGAA 59.738 61.111 12.06 0.00 40.25 4.30
505 3557 1.374252 GAAGTCTCGCCTGCGGAAA 60.374 57.895 12.06 0.00 40.25 3.13
506 3558 1.355066 GAAGTCTCGCCTGCGGAAAG 61.355 60.000 12.06 2.01 40.25 2.62
507 3559 1.816863 AAGTCTCGCCTGCGGAAAGA 61.817 55.000 12.06 4.54 40.25 2.52
508 3560 2.095252 GTCTCGCCTGCGGAAAGAC 61.095 63.158 12.06 13.00 40.25 3.01
509 3561 2.815647 CTCGCCTGCGGAAAGACC 60.816 66.667 12.06 0.00 40.25 3.85
519 3571 1.600638 GGAAAGACCGTGGTAGGGG 59.399 63.158 0.00 0.00 35.02 4.79
520 3572 1.078637 GAAAGACCGTGGTAGGGGC 60.079 63.158 0.00 0.00 35.02 5.80
521 3573 2.847435 GAAAGACCGTGGTAGGGGCG 62.847 65.000 0.00 0.00 35.97 6.13
527 3579 4.404098 GTGGTAGGGGCGGTGGTG 62.404 72.222 0.00 0.00 0.00 4.17
538 3590 2.438434 GGTGGTGGCCCGATCTTG 60.438 66.667 0.00 0.00 0.00 3.02
539 3591 2.351276 GTGGTGGCCCGATCTTGT 59.649 61.111 0.00 0.00 0.00 3.16
540 3592 2.040544 GTGGTGGCCCGATCTTGTG 61.041 63.158 0.00 0.00 0.00 3.33
541 3593 2.438434 GGTGGCCCGATCTTGTGG 60.438 66.667 0.00 0.00 0.00 4.17
546 3598 2.511600 CCCGATCTTGTGGGCGTC 60.512 66.667 0.00 0.00 38.90 5.19
547 3599 2.511600 CCGATCTTGTGGGCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
548 3600 2.264480 CGATCTTGTGGGCGTCCA 59.736 61.111 3.51 3.51 41.58 4.02
549 3601 1.375396 CGATCTTGTGGGCGTCCAA 60.375 57.895 12.16 0.00 46.04 3.53
550 3602 0.953471 CGATCTTGTGGGCGTCCAAA 60.953 55.000 12.16 0.21 46.04 3.28
551 3603 1.463674 GATCTTGTGGGCGTCCAAAT 58.536 50.000 12.16 1.57 46.04 2.32
552 3604 2.639065 GATCTTGTGGGCGTCCAAATA 58.361 47.619 12.16 0.00 46.04 1.40
553 3605 1.816074 TCTTGTGGGCGTCCAAATAC 58.184 50.000 12.16 0.00 46.04 1.89
554 3606 1.072489 TCTTGTGGGCGTCCAAATACA 59.928 47.619 12.16 0.14 46.04 2.29
555 3607 1.468520 CTTGTGGGCGTCCAAATACAG 59.531 52.381 12.16 0.00 46.04 2.74
556 3608 0.398696 TGTGGGCGTCCAAATACAGT 59.601 50.000 12.16 0.00 46.04 3.55
557 3609 0.802494 GTGGGCGTCCAAATACAGTG 59.198 55.000 12.16 0.00 46.04 3.66
558 3610 0.322098 TGGGCGTCCAAATACAGTGG 60.322 55.000 6.10 0.00 40.73 4.00
559 3611 0.322187 GGGCGTCCAAATACAGTGGT 60.322 55.000 0.00 0.00 37.43 4.16
560 3612 0.802494 GGCGTCCAAATACAGTGGTG 59.198 55.000 0.00 0.00 37.43 4.17
561 3613 0.802494 GCGTCCAAATACAGTGGTGG 59.198 55.000 0.00 0.00 37.43 4.61
562 3614 1.448985 CGTCCAAATACAGTGGTGGG 58.551 55.000 0.00 0.00 37.43 4.61
563 3615 1.173913 GTCCAAATACAGTGGTGGGC 58.826 55.000 0.00 0.00 37.43 5.36
564 3616 1.072266 TCCAAATACAGTGGTGGGCT 58.928 50.000 0.00 0.00 37.43 5.19
565 3617 1.427368 TCCAAATACAGTGGTGGGCTT 59.573 47.619 0.00 0.00 37.43 4.35
566 3618 2.158385 TCCAAATACAGTGGTGGGCTTT 60.158 45.455 0.00 0.00 37.43 3.51
567 3619 2.632512 CCAAATACAGTGGTGGGCTTTT 59.367 45.455 0.00 0.00 0.00 2.27
568 3620 3.306019 CCAAATACAGTGGTGGGCTTTTC 60.306 47.826 0.00 0.00 0.00 2.29
569 3621 2.969821 ATACAGTGGTGGGCTTTTCA 57.030 45.000 0.00 0.00 0.00 2.69
570 3622 2.270352 TACAGTGGTGGGCTTTTCAG 57.730 50.000 0.00 0.00 0.00 3.02
571 3623 0.468029 ACAGTGGTGGGCTTTTCAGG 60.468 55.000 0.00 0.00 0.00 3.86
572 3624 0.178992 CAGTGGTGGGCTTTTCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
573 3625 0.779997 AGTGGTGGGCTTTTCAGGAT 59.220 50.000 0.00 0.00 0.00 3.24
574 3626 1.147817 AGTGGTGGGCTTTTCAGGATT 59.852 47.619 0.00 0.00 0.00 3.01
575 3627 1.273327 GTGGTGGGCTTTTCAGGATTG 59.727 52.381 0.00 0.00 0.00 2.67
576 3628 1.146774 TGGTGGGCTTTTCAGGATTGA 59.853 47.619 0.00 0.00 0.00 2.57
577 3629 2.225343 TGGTGGGCTTTTCAGGATTGAT 60.225 45.455 0.00 0.00 32.27 2.57
578 3630 2.833943 GGTGGGCTTTTCAGGATTGATT 59.166 45.455 0.00 0.00 32.27 2.57
579 3631 4.023291 GGTGGGCTTTTCAGGATTGATTA 58.977 43.478 0.00 0.00 32.27 1.75
580 3632 4.466015 GGTGGGCTTTTCAGGATTGATTAA 59.534 41.667 0.00 0.00 32.27 1.40
581 3633 5.394553 GGTGGGCTTTTCAGGATTGATTAAG 60.395 44.000 0.00 0.00 32.27 1.85
582 3634 4.160252 TGGGCTTTTCAGGATTGATTAAGC 59.840 41.667 12.61 12.61 43.49 3.09
584 3636 4.686972 GCTTTTCAGGATTGATTAAGCCC 58.313 43.478 0.12 0.00 43.44 5.19
585 3637 4.734695 GCTTTTCAGGATTGATTAAGCCCG 60.735 45.833 0.12 0.00 43.44 6.13
586 3638 3.644966 TTCAGGATTGATTAAGCCCGT 57.355 42.857 0.12 0.00 43.44 5.28
587 3639 2.917933 TCAGGATTGATTAAGCCCGTG 58.082 47.619 0.12 0.00 43.44 4.94
588 3640 1.949525 CAGGATTGATTAAGCCCGTGG 59.050 52.381 0.12 0.00 43.44 4.94
603 3655 2.449518 TGGCTTCTCCCACACCCA 60.450 61.111 0.00 0.00 0.00 4.51
604 3656 2.352805 GGCTTCTCCCACACCCAG 59.647 66.667 0.00 0.00 0.00 4.45
605 3657 2.352805 GCTTCTCCCACACCCAGG 59.647 66.667 0.00 0.00 0.00 4.45
612 3664 3.081554 CCACACCCAGGGAAGAGG 58.918 66.667 14.54 8.65 0.00 3.69
613 3665 2.352805 CACACCCAGGGAAGAGGC 59.647 66.667 14.54 0.00 0.00 4.70
614 3666 3.322466 ACACCCAGGGAAGAGGCG 61.322 66.667 14.54 0.00 0.00 5.52
615 3667 4.101448 CACCCAGGGAAGAGGCGG 62.101 72.222 14.54 0.00 0.00 6.13
619 3671 2.770048 CAGGGAAGAGGCGGGGAT 60.770 66.667 0.00 0.00 0.00 3.85
620 3672 2.446802 AGGGAAGAGGCGGGGATC 60.447 66.667 0.00 0.00 0.00 3.36
621 3673 3.561241 GGGAAGAGGCGGGGATCC 61.561 72.222 1.92 1.92 0.00 3.36
622 3674 3.561241 GGAAGAGGCGGGGATCCC 61.561 72.222 23.95 23.95 41.09 3.85
623 3675 2.768344 GAAGAGGCGGGGATCCCA 60.768 66.667 32.07 0.00 45.83 4.37
624 3676 2.770048 AAGAGGCGGGGATCCCAG 60.770 66.667 32.07 28.68 45.83 4.45
625 3677 4.888325 AGAGGCGGGGATCCCAGG 62.888 72.222 32.07 23.02 45.83 4.45
626 3678 4.880426 GAGGCGGGGATCCCAGGA 62.880 72.222 32.07 0.00 45.83 3.86
627 3679 4.888325 AGGCGGGGATCCCAGGAG 62.888 72.222 32.07 19.68 45.83 3.69
645 3697 3.953542 GAGGATCCCCTGTAACCAAAT 57.046 47.619 8.55 0.00 44.53 2.32
646 3698 3.555966 GAGGATCCCCTGTAACCAAATG 58.444 50.000 8.55 0.00 44.53 2.32
647 3699 3.197983 AGGATCCCCTGTAACCAAATGA 58.802 45.455 8.55 0.00 42.42 2.57
648 3700 3.203040 AGGATCCCCTGTAACCAAATGAG 59.797 47.826 8.55 0.00 42.42 2.90
649 3701 2.507407 TCCCCTGTAACCAAATGAGC 57.493 50.000 0.00 0.00 0.00 4.26
650 3702 1.005450 TCCCCTGTAACCAAATGAGCC 59.995 52.381 0.00 0.00 0.00 4.70
651 3703 1.474330 CCCTGTAACCAAATGAGCCC 58.526 55.000 0.00 0.00 0.00 5.19
706 3758 3.256558 GGACTACGTACGGAGCAAAATT 58.743 45.455 27.33 6.58 0.00 1.82
714 3766 6.848451 ACGTACGGAGCAAAATTAATGAATT 58.152 32.000 21.06 0.00 36.82 2.17
853 3905 8.394877 GTTTTTCTTTTTATTGAGGGGTGTTTG 58.605 33.333 0.00 0.00 0.00 2.93
1091 4153 1.389609 GGCCTCGAATGGAGTACCGA 61.390 60.000 0.00 0.00 41.46 4.69
1480 4558 0.031716 ATGCAGGTAGAGAGGGCAGA 60.032 55.000 0.00 0.00 37.96 4.26
1872 5060 1.957186 TTTTCCCTGAACCGTCGCG 60.957 57.895 0.00 0.00 0.00 5.87
1959 5149 1.008938 AGGGACTCTATTGGGCTCTGT 59.991 52.381 0.00 0.00 0.00 3.41
2018 5208 3.536956 TTTATGTTGCTACTCCCTCCG 57.463 47.619 0.00 0.00 0.00 4.63
2031 5221 3.198872 CTCCCTCCGTCTCAAAATAAGC 58.801 50.000 0.00 0.00 0.00 3.09
2032 5222 1.933853 CCCTCCGTCTCAAAATAAGCG 59.066 52.381 0.00 0.00 0.00 4.68
2085 5275 7.772332 AGTTGTACTAAACTTGAGACACTTG 57.228 36.000 0.00 0.00 37.05 3.16
2089 5279 8.193250 TGTACTAAACTTGAGACACTTGTTTC 57.807 34.615 0.00 0.00 33.63 2.78
2095 5285 4.039973 ACTTGAGACACTTGTTTCGGGATA 59.960 41.667 0.00 0.00 32.42 2.59
2377 5690 9.823647 TTTCATGGTTACATTGTACAAAATTGT 57.176 25.926 13.23 14.64 39.12 2.71
2561 5880 8.169977 AGATAAAGTGTCAAATGAAAGCTCAA 57.830 30.769 0.00 0.00 34.49 3.02
2652 5971 5.591877 ACATCTTTCTCAGATTATGCAACCC 59.408 40.000 0.00 0.00 40.67 4.11
2906 6232 4.781934 ACTGTTGATCATTAGCCCCTTAC 58.218 43.478 0.00 0.00 0.00 2.34
2969 6296 4.130286 AGTAAGCCTATGCTCACTGTTC 57.870 45.455 0.00 0.00 44.71 3.18
2970 6297 3.429547 AGTAAGCCTATGCTCACTGTTCG 60.430 47.826 0.00 0.00 44.71 3.95
2971 6298 2.009888 GCCTATGCTCACTGTTCGC 58.990 57.895 0.00 0.00 33.53 4.70
2972 6299 0.740868 GCCTATGCTCACTGTTCGCA 60.741 55.000 3.61 3.61 38.14 5.10
2973 6300 1.002366 CCTATGCTCACTGTTCGCAC 58.998 55.000 3.24 0.00 36.37 5.34
2974 6301 1.672737 CCTATGCTCACTGTTCGCACA 60.673 52.381 3.24 0.00 36.37 4.57
2975 6302 1.391485 CTATGCTCACTGTTCGCACAC 59.609 52.381 3.24 0.00 36.37 3.82
2976 6303 1.560004 ATGCTCACTGTTCGCACACG 61.560 55.000 3.24 0.00 36.37 4.49
2986 6313 2.241537 CGCACACGAACACGTCAC 59.758 61.111 0.00 0.00 43.93 3.67
2987 6314 2.624264 GCACACGAACACGTCACC 59.376 61.111 0.00 0.00 38.21 4.02
2988 6315 2.917901 CACACGAACACGTCACCG 59.082 61.111 0.00 0.00 38.21 4.94
2998 6325 3.357919 CGTCACCGTGTACCTCCA 58.642 61.111 0.00 0.00 0.00 3.86
2999 6326 1.661480 CGTCACCGTGTACCTCCAA 59.339 57.895 0.00 0.00 0.00 3.53
3000 6327 0.665369 CGTCACCGTGTACCTCCAAC 60.665 60.000 0.00 0.00 0.00 3.77
3001 6328 0.665369 GTCACCGTGTACCTCCAACG 60.665 60.000 0.00 0.00 37.07 4.10
3002 6329 2.025418 CACCGTGTACCTCCAACGC 61.025 63.158 0.00 0.00 36.02 4.84
3003 6330 2.433664 CCGTGTACCTCCAACGCC 60.434 66.667 0.00 0.00 36.02 5.68
3004 6331 2.807895 CGTGTACCTCCAACGCCG 60.808 66.667 0.00 0.00 0.00 6.46
3005 6332 2.652530 GTGTACCTCCAACGCCGA 59.347 61.111 0.00 0.00 0.00 5.54
3006 6333 1.445582 GTGTACCTCCAACGCCGAG 60.446 63.158 0.00 0.00 0.00 4.63
3010 6337 4.760047 CCTCCAACGCCGAGGGTG 62.760 72.222 0.00 0.00 42.85 4.61
3011 6338 3.691342 CTCCAACGCCGAGGGTGA 61.691 66.667 1.62 0.00 36.58 4.02
3012 6339 3.000819 TCCAACGCCGAGGGTGAT 61.001 61.111 1.62 0.00 36.58 3.06
3013 6340 2.819595 CCAACGCCGAGGGTGATG 60.820 66.667 1.62 0.24 36.07 3.07
3014 6341 3.499737 CAACGCCGAGGGTGATGC 61.500 66.667 1.62 0.00 36.58 3.91
3015 6342 4.015406 AACGCCGAGGGTGATGCA 62.015 61.111 1.62 0.00 36.58 3.96
3016 6343 4.760047 ACGCCGAGGGTGATGCAC 62.760 66.667 1.62 0.00 36.58 4.57
3024 6351 2.870372 GGTGATGCACCGCAACTC 59.130 61.111 0.22 0.00 44.95 3.01
3025 6352 1.965930 GGTGATGCACCGCAACTCA 60.966 57.895 0.22 0.00 44.95 3.41
3026 6353 1.207593 GTGATGCACCGCAACTCAC 59.792 57.895 6.88 6.88 43.62 3.51
3027 6354 2.316867 TGATGCACCGCAACTCACG 61.317 57.895 0.00 0.00 43.62 4.35
3028 6355 2.280797 ATGCACCGCAACTCACGT 60.281 55.556 0.00 0.00 43.62 4.49
3029 6356 1.841663 GATGCACCGCAACTCACGTT 61.842 55.000 0.00 0.00 43.62 3.99
3039 6366 2.528041 AACTCACGTTGAAGGAGACC 57.472 50.000 6.83 0.00 33.00 3.85
3040 6367 0.680061 ACTCACGTTGAAGGAGACCC 59.320 55.000 6.83 0.00 33.00 4.46
3041 6368 0.679505 CTCACGTTGAAGGAGACCCA 59.320 55.000 0.00 0.00 33.88 4.51
3042 6369 0.679505 TCACGTTGAAGGAGACCCAG 59.320 55.000 0.00 0.00 33.88 4.45
3043 6370 0.951040 CACGTTGAAGGAGACCCAGC 60.951 60.000 0.00 0.00 33.88 4.85
3044 6371 1.376037 CGTTGAAGGAGACCCAGCC 60.376 63.158 0.00 0.00 33.88 4.85
3045 6372 1.376037 GTTGAAGGAGACCCAGCCG 60.376 63.158 0.00 0.00 33.88 5.52
3046 6373 2.592993 TTGAAGGAGACCCAGCCGG 61.593 63.158 0.00 0.00 37.81 6.13
3047 6374 2.683933 GAAGGAGACCCAGCCGGA 60.684 66.667 5.05 0.00 34.64 5.14
3048 6375 2.203938 AAGGAGACCCAGCCGGAA 60.204 61.111 5.05 0.00 34.64 4.30
3049 6376 2.245438 GAAGGAGACCCAGCCGGAAG 62.245 65.000 5.05 0.00 34.64 3.46
3050 6377 4.475135 GGAGACCCAGCCGGAAGC 62.475 72.222 5.05 0.00 44.25 3.86
3080 6407 3.061848 CAATCCGGCGGGTGCTTT 61.062 61.111 27.98 9.46 42.25 3.51
3081 6408 2.282887 AATCCGGCGGGTGCTTTT 60.283 55.556 27.98 0.00 42.25 2.27
3082 6409 2.635443 AATCCGGCGGGTGCTTTTG 61.635 57.895 27.98 0.00 42.25 2.44
3083 6410 3.561120 ATCCGGCGGGTGCTTTTGA 62.561 57.895 27.98 2.79 42.25 2.69
3084 6411 3.737172 CCGGCGGGTGCTTTTGAG 61.737 66.667 20.56 0.00 42.25 3.02
3085 6412 3.737172 CGGCGGGTGCTTTTGAGG 61.737 66.667 0.00 0.00 42.25 3.86
3086 6413 2.282180 GGCGGGTGCTTTTGAGGA 60.282 61.111 0.00 0.00 42.25 3.71
3087 6414 2.626780 GGCGGGTGCTTTTGAGGAC 61.627 63.158 0.00 0.00 42.25 3.85
3090 6417 3.668386 GGTGCTTTTGAGGACCCG 58.332 61.111 5.88 0.00 43.36 5.28
3091 6418 1.072505 GGTGCTTTTGAGGACCCGA 59.927 57.895 5.88 0.00 43.36 5.14
3092 6419 0.536460 GGTGCTTTTGAGGACCCGAA 60.536 55.000 5.88 0.00 43.36 4.30
3093 6420 1.314730 GTGCTTTTGAGGACCCGAAA 58.685 50.000 0.00 0.00 0.00 3.46
3094 6421 1.001706 GTGCTTTTGAGGACCCGAAAC 60.002 52.381 0.00 0.00 0.00 2.78
3095 6422 0.596577 GCTTTTGAGGACCCGAAACC 59.403 55.000 0.00 0.00 0.00 3.27
3096 6423 1.244816 CTTTTGAGGACCCGAAACCC 58.755 55.000 0.00 0.00 0.00 4.11
3097 6424 0.178984 TTTTGAGGACCCGAAACCCC 60.179 55.000 0.00 0.00 0.00 4.95
3098 6425 1.354168 TTTGAGGACCCGAAACCCCA 61.354 55.000 0.00 0.00 0.00 4.96
3099 6426 2.059345 TTGAGGACCCGAAACCCCAC 62.059 60.000 0.00 0.00 0.00 4.61
3100 6427 2.448931 AGGACCCGAAACCCCACA 60.449 61.111 0.00 0.00 0.00 4.17
3101 6428 2.281970 GGACCCGAAACCCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
3102 6429 2.667199 GACCCGAAACCCCACACG 60.667 66.667 0.00 0.00 0.00 4.49
3103 6430 4.941309 ACCCGAAACCCCACACGC 62.941 66.667 0.00 0.00 0.00 5.34
3144 6471 3.202001 CGCGGTGGCTATGGGTTG 61.202 66.667 0.00 0.00 36.88 3.77
3145 6472 3.518068 GCGGTGGCTATGGGTTGC 61.518 66.667 0.00 0.00 35.83 4.17
3151 6478 1.456287 GGCTATGGGTTGCCCTAGG 59.544 63.158 0.06 0.06 45.70 3.02
3152 6479 1.353394 GGCTATGGGTTGCCCTAGGT 61.353 60.000 8.29 0.00 45.70 3.08
3153 6480 0.108774 GCTATGGGTTGCCCTAGGTC 59.891 60.000 8.29 0.00 45.70 3.85
3154 6481 0.393077 CTATGGGTTGCCCTAGGTCG 59.607 60.000 8.29 0.00 45.70 4.79
3155 6482 0.031917 TATGGGTTGCCCTAGGTCGA 60.032 55.000 8.29 0.00 45.70 4.20
3156 6483 1.623542 ATGGGTTGCCCTAGGTCGAC 61.624 60.000 7.13 7.13 45.70 4.20
3157 6484 2.582978 GGTTGCCCTAGGTCGACC 59.417 66.667 27.67 27.67 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.194116 CAGCCCTAAATGTTTGCACTCAT 59.806 43.478 0.00 0.00 0.00 2.90
98 99 5.538067 AAAAGAGTTCTTCGCTAGATTGC 57.462 39.130 0.00 0.00 34.61 3.56
188 190 2.675348 TGTGTGTGTGTGTGTGTATGTG 59.325 45.455 0.00 0.00 0.00 3.21
190 192 4.550577 AATGTGTGTGTGTGTGTGTATG 57.449 40.909 0.00 0.00 0.00 2.39
192 194 5.465056 CAGATAATGTGTGTGTGTGTGTGTA 59.535 40.000 0.00 0.00 0.00 2.90
193 195 4.273235 CAGATAATGTGTGTGTGTGTGTGT 59.727 41.667 0.00 0.00 0.00 3.72
194 196 4.511082 TCAGATAATGTGTGTGTGTGTGTG 59.489 41.667 0.00 0.00 0.00 3.82
195 197 4.702831 TCAGATAATGTGTGTGTGTGTGT 58.297 39.130 0.00 0.00 0.00 3.72
197 199 5.213891 TCTCAGATAATGTGTGTGTGTGT 57.786 39.130 0.00 0.00 0.00 3.72
198 200 6.544038 TTTCTCAGATAATGTGTGTGTGTG 57.456 37.500 0.00 0.00 0.00 3.82
199 201 7.877612 TGTATTTCTCAGATAATGTGTGTGTGT 59.122 33.333 0.00 0.00 0.00 3.72
200 202 8.255394 TGTATTTCTCAGATAATGTGTGTGTG 57.745 34.615 0.00 0.00 0.00 3.82
240 3113 9.937876 TGGAGGGAGTATATCTATATACCTTTG 57.062 37.037 13.92 0.00 43.81 2.77
277 3329 1.203001 TCCCCCTTGCTACCAAACAAG 60.203 52.381 0.00 0.00 42.35 3.16
278 3330 0.854218 TCCCCCTTGCTACCAAACAA 59.146 50.000 0.00 0.00 0.00 2.83
279 3331 0.404040 CTCCCCCTTGCTACCAAACA 59.596 55.000 0.00 0.00 0.00 2.83
280 3332 0.696501 TCTCCCCCTTGCTACCAAAC 59.303 55.000 0.00 0.00 0.00 2.93
281 3333 1.451449 TTCTCCCCCTTGCTACCAAA 58.549 50.000 0.00 0.00 0.00 3.28
282 3334 1.451449 TTTCTCCCCCTTGCTACCAA 58.549 50.000 0.00 0.00 0.00 3.67
283 3335 1.564348 GATTTCTCCCCCTTGCTACCA 59.436 52.381 0.00 0.00 0.00 3.25
284 3336 1.133761 GGATTTCTCCCCCTTGCTACC 60.134 57.143 0.00 0.00 35.28 3.18
285 3337 2.350057 GGATTTCTCCCCCTTGCTAC 57.650 55.000 0.00 0.00 35.28 3.58
295 3347 1.076705 GTGGCCCTGGGATTTCTCC 60.077 63.158 19.27 7.45 41.26 3.71
296 3348 0.039618 TTGTGGCCCTGGGATTTCTC 59.960 55.000 19.27 4.14 0.00 2.87
297 3349 0.040204 CTTGTGGCCCTGGGATTTCT 59.960 55.000 19.27 0.00 0.00 2.52
298 3350 1.607801 GCTTGTGGCCCTGGGATTTC 61.608 60.000 19.27 3.81 34.27 2.17
299 3351 1.610379 GCTTGTGGCCCTGGGATTT 60.610 57.895 19.27 0.00 34.27 2.17
300 3352 2.037847 GCTTGTGGCCCTGGGATT 59.962 61.111 19.27 0.00 34.27 3.01
319 3371 2.933928 GCACGTGAAAACTACCCCTAGG 60.934 54.545 22.23 0.06 40.04 3.02
320 3372 2.289195 TGCACGTGAAAACTACCCCTAG 60.289 50.000 22.23 0.00 0.00 3.02
321 3373 1.693062 TGCACGTGAAAACTACCCCTA 59.307 47.619 22.23 0.00 0.00 3.53
322 3374 0.470766 TGCACGTGAAAACTACCCCT 59.529 50.000 22.23 0.00 0.00 4.79
323 3375 0.589708 GTGCACGTGAAAACTACCCC 59.410 55.000 22.23 0.00 0.00 4.95
324 3376 1.301423 TGTGCACGTGAAAACTACCC 58.699 50.000 22.23 0.00 0.00 3.69
325 3377 3.619233 AATGTGCACGTGAAAACTACC 57.381 42.857 22.23 0.00 0.00 3.18
326 3378 5.585500 TCTAATGTGCACGTGAAAACTAC 57.415 39.130 22.23 8.00 0.00 2.73
327 3379 6.128391 GGAATCTAATGTGCACGTGAAAACTA 60.128 38.462 22.23 0.00 0.00 2.24
328 3380 5.334879 GGAATCTAATGTGCACGTGAAAACT 60.335 40.000 22.23 0.00 0.00 2.66
329 3381 4.851558 GGAATCTAATGTGCACGTGAAAAC 59.148 41.667 22.23 14.22 0.00 2.43
330 3382 4.083003 GGGAATCTAATGTGCACGTGAAAA 60.083 41.667 22.23 3.42 0.00 2.29
331 3383 3.438781 GGGAATCTAATGTGCACGTGAAA 59.561 43.478 22.23 2.99 0.00 2.69
332 3384 3.006940 GGGAATCTAATGTGCACGTGAA 58.993 45.455 22.23 5.66 0.00 3.18
333 3385 2.627945 GGGAATCTAATGTGCACGTGA 58.372 47.619 22.23 6.95 0.00 4.35
334 3386 1.670811 GGGGAATCTAATGTGCACGTG 59.329 52.381 13.39 12.28 0.00 4.49
335 3387 1.280710 TGGGGAATCTAATGTGCACGT 59.719 47.619 13.13 9.52 0.00 4.49
336 3388 2.036958 TGGGGAATCTAATGTGCACG 57.963 50.000 13.13 0.00 0.00 5.34
337 3389 2.689983 CCTTGGGGAATCTAATGTGCAC 59.310 50.000 10.75 10.75 33.58 4.57
338 3390 2.580322 TCCTTGGGGAATCTAATGTGCA 59.420 45.455 0.00 0.00 38.93 4.57
339 3391 3.297134 TCCTTGGGGAATCTAATGTGC 57.703 47.619 0.00 0.00 38.93 4.57
350 3402 3.969976 CTGTGATAGAGATTCCTTGGGGA 59.030 47.826 0.00 0.00 40.36 4.81
351 3403 3.495806 GCTGTGATAGAGATTCCTTGGGG 60.496 52.174 0.00 0.00 0.00 4.96
352 3404 3.495806 GGCTGTGATAGAGATTCCTTGGG 60.496 52.174 0.00 0.00 0.00 4.12
353 3405 3.737850 GGCTGTGATAGAGATTCCTTGG 58.262 50.000 0.00 0.00 0.00 3.61
354 3406 3.388308 CGGCTGTGATAGAGATTCCTTG 58.612 50.000 0.00 0.00 0.00 3.61
355 3407 2.224161 GCGGCTGTGATAGAGATTCCTT 60.224 50.000 0.00 0.00 0.00 3.36
356 3408 1.342819 GCGGCTGTGATAGAGATTCCT 59.657 52.381 0.00 0.00 0.00 3.36
357 3409 1.606737 GGCGGCTGTGATAGAGATTCC 60.607 57.143 0.00 0.00 0.00 3.01
358 3410 1.069204 TGGCGGCTGTGATAGAGATTC 59.931 52.381 11.43 0.00 0.00 2.52
359 3411 1.069823 CTGGCGGCTGTGATAGAGATT 59.930 52.381 11.43 0.00 0.00 2.40
360 3412 0.678395 CTGGCGGCTGTGATAGAGAT 59.322 55.000 11.43 0.00 0.00 2.75
361 3413 0.684479 ACTGGCGGCTGTGATAGAGA 60.684 55.000 20.57 0.00 0.00 3.10
362 3414 0.529337 CACTGGCGGCTGTGATAGAG 60.529 60.000 35.41 14.30 36.38 2.43
363 3415 1.517361 CACTGGCGGCTGTGATAGA 59.483 57.895 35.41 2.05 36.38 1.98
364 3416 1.522355 CCACTGGCGGCTGTGATAG 60.522 63.158 38.57 23.89 36.38 2.08
365 3417 2.584064 CCACTGGCGGCTGTGATA 59.416 61.111 38.57 7.40 36.38 2.15
366 3418 4.415150 CCCACTGGCGGCTGTGAT 62.415 66.667 38.57 10.71 36.38 3.06
376 3428 2.298158 ATCTACGCTTCGCCCACTGG 62.298 60.000 0.00 0.00 0.00 4.00
377 3429 1.141881 ATCTACGCTTCGCCCACTG 59.858 57.895 0.00 0.00 0.00 3.66
378 3430 1.141881 CATCTACGCTTCGCCCACT 59.858 57.895 0.00 0.00 0.00 4.00
379 3431 1.153628 ACATCTACGCTTCGCCCAC 60.154 57.895 0.00 0.00 0.00 4.61
380 3432 1.153647 CACATCTACGCTTCGCCCA 60.154 57.895 0.00 0.00 0.00 5.36
381 3433 1.883084 CCACATCTACGCTTCGCCC 60.883 63.158 0.00 0.00 0.00 6.13
382 3434 0.872021 CTCCACATCTACGCTTCGCC 60.872 60.000 0.00 0.00 0.00 5.54
383 3435 0.872021 CCTCCACATCTACGCTTCGC 60.872 60.000 0.00 0.00 0.00 4.70
384 3436 0.738975 TCCTCCACATCTACGCTTCG 59.261 55.000 0.00 0.00 0.00 3.79
385 3437 2.546795 CCATCCTCCACATCTACGCTTC 60.547 54.545 0.00 0.00 0.00 3.86
386 3438 1.414181 CCATCCTCCACATCTACGCTT 59.586 52.381 0.00 0.00 0.00 4.68
387 3439 1.043816 CCATCCTCCACATCTACGCT 58.956 55.000 0.00 0.00 0.00 5.07
388 3440 0.601311 GCCATCCTCCACATCTACGC 60.601 60.000 0.00 0.00 0.00 4.42
389 3441 1.043816 AGCCATCCTCCACATCTACG 58.956 55.000 0.00 0.00 0.00 3.51
390 3442 1.071385 CCAGCCATCCTCCACATCTAC 59.929 57.143 0.00 0.00 0.00 2.59
391 3443 1.427809 CCAGCCATCCTCCACATCTA 58.572 55.000 0.00 0.00 0.00 1.98
392 3444 1.351080 CCCAGCCATCCTCCACATCT 61.351 60.000 0.00 0.00 0.00 2.90
393 3445 1.150081 CCCAGCCATCCTCCACATC 59.850 63.158 0.00 0.00 0.00 3.06
394 3446 2.389449 CCCCAGCCATCCTCCACAT 61.389 63.158 0.00 0.00 0.00 3.21
395 3447 3.016971 CCCCAGCCATCCTCCACA 61.017 66.667 0.00 0.00 0.00 4.17
396 3448 2.692368 TCCCCAGCCATCCTCCAC 60.692 66.667 0.00 0.00 0.00 4.02
397 3449 2.367377 CTCCCCAGCCATCCTCCA 60.367 66.667 0.00 0.00 0.00 3.86
398 3450 2.367512 ACTCCCCAGCCATCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
399 3451 2.750657 CCACTCCCCAGCCATCCTC 61.751 68.421 0.00 0.00 0.00 3.71
400 3452 2.693864 CCACTCCCCAGCCATCCT 60.694 66.667 0.00 0.00 0.00 3.24
401 3453 4.512914 GCCACTCCCCAGCCATCC 62.513 72.222 0.00 0.00 0.00 3.51
402 3454 2.900671 GAAGCCACTCCCCAGCCATC 62.901 65.000 0.00 0.00 0.00 3.51
403 3455 2.943265 AAGCCACTCCCCAGCCAT 60.943 61.111 0.00 0.00 0.00 4.40
404 3456 3.650950 GAAGCCACTCCCCAGCCA 61.651 66.667 0.00 0.00 0.00 4.75
405 3457 4.432741 GGAAGCCACTCCCCAGCC 62.433 72.222 0.00 0.00 0.00 4.85
406 3458 3.210012 TTGGAAGCCACTCCCCAGC 62.210 63.158 0.00 0.00 34.22 4.85
407 3459 1.303643 GTTGGAAGCCACTCCCCAG 60.304 63.158 0.00 0.00 34.22 4.45
408 3460 1.774217 AGTTGGAAGCCACTCCCCA 60.774 57.895 0.00 0.00 34.22 4.96
409 3461 1.002011 GAGTTGGAAGCCACTCCCC 60.002 63.158 0.00 0.00 34.22 4.81
410 3462 1.002011 GGAGTTGGAAGCCACTCCC 60.002 63.158 17.20 3.73 41.52 4.30
411 3463 0.329596 ATGGAGTTGGAAGCCACTCC 59.670 55.000 19.43 19.43 44.44 3.85
412 3464 1.743996 GATGGAGTTGGAAGCCACTC 58.256 55.000 0.00 0.00 33.93 3.51
413 3465 0.036010 CGATGGAGTTGGAAGCCACT 60.036 55.000 0.00 0.00 33.93 4.00
414 3466 1.648467 GCGATGGAGTTGGAAGCCAC 61.648 60.000 0.00 0.00 33.93 5.01
415 3467 1.377202 GCGATGGAGTTGGAAGCCA 60.377 57.895 0.00 0.00 35.91 4.75
416 3468 2.115291 GGCGATGGAGTTGGAAGCC 61.115 63.158 0.00 0.00 36.08 4.35
417 3469 1.372087 CTGGCGATGGAGTTGGAAGC 61.372 60.000 0.00 0.00 0.00 3.86
418 3470 0.036010 ACTGGCGATGGAGTTGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
419 3471 0.400213 AACTGGCGATGGAGTTGGAA 59.600 50.000 0.00 0.00 31.09 3.53
420 3472 0.400213 AAACTGGCGATGGAGTTGGA 59.600 50.000 0.00 0.00 32.66 3.53
421 3473 1.247567 AAAACTGGCGATGGAGTTGG 58.752 50.000 0.00 0.00 32.66 3.77
448 3500 4.148645 GAAAACCCGCGCTCGCTC 62.149 66.667 5.56 0.00 39.32 5.03
449 3501 4.681978 AGAAAACCCGCGCTCGCT 62.682 61.111 5.56 0.00 39.32 4.93
450 3502 4.148645 GAGAAAACCCGCGCTCGC 62.149 66.667 5.56 3.90 37.85 5.03
451 3503 3.488090 GGAGAAAACCCGCGCTCG 61.488 66.667 5.56 0.00 0.00 5.03
452 3504 3.125573 GGGAGAAAACCCGCGCTC 61.126 66.667 5.56 0.00 40.49 5.03
459 3511 0.034960 GAGAGGCTGGGGAGAAAACC 60.035 60.000 0.00 0.00 0.00 3.27
460 3512 0.391793 CGAGAGGCTGGGGAGAAAAC 60.392 60.000 0.00 0.00 0.00 2.43
461 3513 0.544357 TCGAGAGGCTGGGGAGAAAA 60.544 55.000 0.00 0.00 0.00 2.29
462 3514 0.972983 CTCGAGAGGCTGGGGAGAAA 60.973 60.000 6.58 0.00 0.00 2.52
463 3515 1.380515 CTCGAGAGGCTGGGGAGAA 60.381 63.158 6.58 0.00 0.00 2.87
464 3516 2.277072 CTCGAGAGGCTGGGGAGA 59.723 66.667 6.58 0.00 0.00 3.71
465 3517 2.837291 CCTCGAGAGGCTGGGGAG 60.837 72.222 15.71 0.00 42.44 4.30
474 3526 1.066908 GAGACTTCCATGCCTCGAGAG 59.933 57.143 15.71 5.19 0.00 3.20
475 3527 1.107114 GAGACTTCCATGCCTCGAGA 58.893 55.000 15.71 0.00 0.00 4.04
476 3528 3.657956 GAGACTTCCATGCCTCGAG 57.342 57.895 5.13 5.13 0.00 4.04
478 3530 4.409342 CGAGACTTCCATGCCTCG 57.591 61.111 0.00 0.00 41.71 4.63
479 3531 1.522580 GGCGAGACTTCCATGCCTC 60.523 63.158 0.00 0.00 42.44 4.70
480 3532 2.586792 GGCGAGACTTCCATGCCT 59.413 61.111 0.00 0.00 42.44 4.75
481 3533 1.817099 CAGGCGAGACTTCCATGCC 60.817 63.158 0.00 0.00 46.07 4.40
482 3534 2.467826 GCAGGCGAGACTTCCATGC 61.468 63.158 0.00 0.00 0.00 4.06
483 3535 2.169789 CGCAGGCGAGACTTCCATG 61.170 63.158 8.15 0.00 42.83 3.66
484 3536 2.185350 CGCAGGCGAGACTTCCAT 59.815 61.111 8.15 0.00 42.83 3.41
485 3537 4.069232 CCGCAGGCGAGACTTCCA 62.069 66.667 16.21 0.00 46.14 3.53
501 3553 1.600638 CCCCTACCACGGTCTTTCC 59.399 63.158 0.00 0.00 0.00 3.13
502 3554 1.078637 GCCCCTACCACGGTCTTTC 60.079 63.158 0.00 0.00 0.00 2.62
503 3555 2.951101 CGCCCCTACCACGGTCTTT 61.951 63.158 0.00 0.00 0.00 2.52
504 3556 3.387947 CGCCCCTACCACGGTCTT 61.388 66.667 0.00 0.00 0.00 3.01
510 3562 4.404098 CACCACCGCCCCTACCAC 62.404 72.222 0.00 0.00 0.00 4.16
521 3573 2.438434 CAAGATCGGGCCACCACC 60.438 66.667 4.39 0.00 36.13 4.61
522 3574 2.040544 CACAAGATCGGGCCACCAC 61.041 63.158 4.39 0.00 36.13 4.16
523 3575 2.350895 CACAAGATCGGGCCACCA 59.649 61.111 4.39 0.00 36.13 4.17
524 3576 2.438434 CCACAAGATCGGGCCACC 60.438 66.667 4.39 0.00 0.00 4.61
525 3577 2.438434 CCCACAAGATCGGGCCAC 60.438 66.667 4.39 0.00 35.09 5.01
529 3581 2.511600 GACGCCCACAAGATCGGG 60.512 66.667 0.00 0.00 46.15 5.14
530 3582 2.511600 GGACGCCCACAAGATCGG 60.512 66.667 0.00 0.00 0.00 4.18
531 3583 0.953471 TTTGGACGCCCACAAGATCG 60.953 55.000 0.00 0.00 43.41 3.69
532 3584 1.463674 ATTTGGACGCCCACAAGATC 58.536 50.000 0.00 0.00 43.41 2.75
533 3585 2.290641 TGTATTTGGACGCCCACAAGAT 60.291 45.455 0.00 0.00 43.41 2.40
534 3586 1.072489 TGTATTTGGACGCCCACAAGA 59.928 47.619 0.00 0.00 43.41 3.02
535 3587 1.468520 CTGTATTTGGACGCCCACAAG 59.531 52.381 0.00 0.00 43.41 3.16
536 3588 1.202830 ACTGTATTTGGACGCCCACAA 60.203 47.619 0.00 0.00 43.41 3.33
537 3589 0.398696 ACTGTATTTGGACGCCCACA 59.601 50.000 0.00 0.00 43.41 4.17
538 3590 0.802494 CACTGTATTTGGACGCCCAC 59.198 55.000 0.00 0.00 43.41 4.61
539 3591 0.322098 CCACTGTATTTGGACGCCCA 60.322 55.000 0.00 0.00 41.64 5.36
540 3592 0.322187 ACCACTGTATTTGGACGCCC 60.322 55.000 0.00 0.00 37.58 6.13
541 3593 0.802494 CACCACTGTATTTGGACGCC 59.198 55.000 0.00 0.00 37.58 5.68
542 3594 0.802494 CCACCACTGTATTTGGACGC 59.198 55.000 0.00 0.00 37.58 5.19
543 3595 1.448985 CCCACCACTGTATTTGGACG 58.551 55.000 0.00 0.00 37.58 4.79
544 3596 1.173913 GCCCACCACTGTATTTGGAC 58.826 55.000 0.00 0.00 37.58 4.02
545 3597 1.072266 AGCCCACCACTGTATTTGGA 58.928 50.000 0.00 0.00 37.58 3.53
546 3598 1.923356 AAGCCCACCACTGTATTTGG 58.077 50.000 0.00 0.00 40.32 3.28
547 3599 3.320541 TGAAAAGCCCACCACTGTATTTG 59.679 43.478 0.00 0.00 0.00 2.32
548 3600 3.571590 TGAAAAGCCCACCACTGTATTT 58.428 40.909 0.00 0.00 0.00 1.40
549 3601 3.157087 CTGAAAAGCCCACCACTGTATT 58.843 45.455 0.00 0.00 0.00 1.89
550 3602 2.555227 CCTGAAAAGCCCACCACTGTAT 60.555 50.000 0.00 0.00 0.00 2.29
551 3603 1.202879 CCTGAAAAGCCCACCACTGTA 60.203 52.381 0.00 0.00 0.00 2.74
552 3604 0.468029 CCTGAAAAGCCCACCACTGT 60.468 55.000 0.00 0.00 0.00 3.55
553 3605 0.178992 TCCTGAAAAGCCCACCACTG 60.179 55.000 0.00 0.00 0.00 3.66
554 3606 0.779997 ATCCTGAAAAGCCCACCACT 59.220 50.000 0.00 0.00 0.00 4.00
555 3607 1.273327 CAATCCTGAAAAGCCCACCAC 59.727 52.381 0.00 0.00 0.00 4.16
556 3608 1.146774 TCAATCCTGAAAAGCCCACCA 59.853 47.619 0.00 0.00 0.00 4.17
557 3609 1.923356 TCAATCCTGAAAAGCCCACC 58.077 50.000 0.00 0.00 0.00 4.61
558 3610 5.654497 CTTAATCAATCCTGAAAAGCCCAC 58.346 41.667 0.00 0.00 34.49 4.61
559 3611 4.160252 GCTTAATCAATCCTGAAAAGCCCA 59.840 41.667 11.59 0.00 42.86 5.36
560 3612 4.686972 GCTTAATCAATCCTGAAAAGCCC 58.313 43.478 11.59 0.00 42.86 5.19
562 3614 4.686972 GGGCTTAATCAATCCTGAAAAGC 58.313 43.478 13.23 13.23 45.28 3.51
563 3615 4.399303 ACGGGCTTAATCAATCCTGAAAAG 59.601 41.667 0.00 0.00 34.49 2.27
564 3616 4.157656 CACGGGCTTAATCAATCCTGAAAA 59.842 41.667 0.00 0.00 34.49 2.29
565 3617 3.694072 CACGGGCTTAATCAATCCTGAAA 59.306 43.478 0.00 0.00 34.49 2.69
566 3618 3.278574 CACGGGCTTAATCAATCCTGAA 58.721 45.455 0.00 0.00 34.49 3.02
567 3619 2.421388 CCACGGGCTTAATCAATCCTGA 60.421 50.000 0.00 0.00 31.78 3.86
568 3620 1.949525 CCACGGGCTTAATCAATCCTG 59.050 52.381 0.00 0.00 33.29 3.86
569 3621 1.750682 GCCACGGGCTTAATCAATCCT 60.751 52.381 7.58 0.00 46.69 3.24
570 3622 0.668535 GCCACGGGCTTAATCAATCC 59.331 55.000 7.58 0.00 46.69 3.01
582 3634 3.636231 TGTGGGAGAAGCCACGGG 61.636 66.667 0.00 0.00 39.52 5.28
583 3635 2.358737 GTGTGGGAGAAGCCACGG 60.359 66.667 0.00 0.00 39.52 4.94
584 3636 2.358737 GGTGTGGGAGAAGCCACG 60.359 66.667 0.00 0.00 39.52 4.94
585 3637 2.034221 GGGTGTGGGAGAAGCCAC 59.966 66.667 0.00 0.00 38.95 5.01
586 3638 2.449518 TGGGTGTGGGAGAAGCCA 60.450 61.111 0.00 0.00 41.52 4.75
587 3639 2.352805 CTGGGTGTGGGAGAAGCC 59.647 66.667 0.00 0.00 34.44 4.35
588 3640 2.352805 CCTGGGTGTGGGAGAAGC 59.647 66.667 0.00 0.00 0.00 3.86
594 3646 2.606587 CCTCTTCCCTGGGTGTGGG 61.607 68.421 13.56 7.79 45.90 4.61
595 3647 3.081554 CCTCTTCCCTGGGTGTGG 58.918 66.667 13.56 12.86 0.00 4.17
596 3648 2.352805 GCCTCTTCCCTGGGTGTG 59.647 66.667 13.56 7.93 0.00 3.82
597 3649 3.322466 CGCCTCTTCCCTGGGTGT 61.322 66.667 13.56 0.00 0.00 4.16
598 3650 4.101448 CCGCCTCTTCCCTGGGTG 62.101 72.222 13.56 7.37 0.00 4.61
602 3654 2.770048 ATCCCCGCCTCTTCCCTG 60.770 66.667 0.00 0.00 0.00 4.45
603 3655 2.446802 GATCCCCGCCTCTTCCCT 60.447 66.667 0.00 0.00 0.00 4.20
604 3656 3.561241 GGATCCCCGCCTCTTCCC 61.561 72.222 0.00 0.00 0.00 3.97
605 3657 3.561241 GGGATCCCCGCCTCTTCC 61.561 72.222 21.42 0.00 32.13 3.46
623 3675 0.722676 TGGTTACAGGGGATCCTCCT 59.277 55.000 8.43 12.02 42.67 3.69
624 3676 1.591768 TTGGTTACAGGGGATCCTCC 58.408 55.000 8.43 9.67 42.67 4.30
625 3677 3.202151 TCATTTGGTTACAGGGGATCCTC 59.798 47.826 12.58 7.90 42.67 3.71
626 3678 3.197983 TCATTTGGTTACAGGGGATCCT 58.802 45.455 12.58 0.00 46.26 3.24
627 3679 3.555966 CTCATTTGGTTACAGGGGATCC 58.444 50.000 1.92 1.92 0.00 3.36
628 3680 2.952310 GCTCATTTGGTTACAGGGGATC 59.048 50.000 0.00 0.00 0.00 3.36
629 3681 2.358195 GGCTCATTTGGTTACAGGGGAT 60.358 50.000 0.00 0.00 0.00 3.85
630 3682 1.005450 GGCTCATTTGGTTACAGGGGA 59.995 52.381 0.00 0.00 0.00 4.81
631 3683 1.474330 GGCTCATTTGGTTACAGGGG 58.526 55.000 0.00 0.00 0.00 4.79
632 3684 1.005924 AGGGCTCATTTGGTTACAGGG 59.994 52.381 0.00 0.00 0.00 4.45
633 3685 2.514458 AGGGCTCATTTGGTTACAGG 57.486 50.000 0.00 0.00 0.00 4.00
634 3686 7.823745 ATATTTAGGGCTCATTTGGTTACAG 57.176 36.000 0.00 0.00 0.00 2.74
635 3687 9.702253 TTTATATTTAGGGCTCATTTGGTTACA 57.298 29.630 0.00 0.00 0.00 2.41
638 3690 9.660544 AGATTTATATTTAGGGCTCATTTGGTT 57.339 29.630 0.00 0.00 0.00 3.67
639 3691 9.660544 AAGATTTATATTTAGGGCTCATTTGGT 57.339 29.630 0.00 0.00 0.00 3.67
692 3744 9.783256 AGTAAATTCATTAATTTTGCTCCGTAC 57.217 29.630 3.07 0.00 41.50 3.67
773 3825 7.690228 TCCCTTCGTTTTGTAAATATGAATCG 58.310 34.615 0.00 0.00 0.00 3.34
776 3828 7.989416 ACTCCCTTCGTTTTGTAAATATGAA 57.011 32.000 0.00 0.00 0.00 2.57
853 3905 3.747193 CTTTGGTCGACATAATGTGCAC 58.253 45.455 18.91 10.75 0.00 4.57
955 4011 2.157452 TGGTCGGTGGGATTTGGGT 61.157 57.895 0.00 0.00 0.00 4.51
1008 4067 2.470286 CTTTCGCGACTTCGGCAC 59.530 61.111 9.15 0.00 40.23 5.01
1076 4138 1.725665 CGCTCGGTACTCCATTCGA 59.274 57.895 0.00 0.00 0.00 3.71
1872 5060 8.225603 ACCACATTTCTATATTGGACAACATC 57.774 34.615 0.00 0.00 0.00 3.06
1939 5128 1.008938 ACAGAGCCCAATAGAGTCCCT 59.991 52.381 0.00 0.00 0.00 4.20
1943 5132 6.567602 AATAAAGACAGAGCCCAATAGAGT 57.432 37.500 0.00 0.00 0.00 3.24
2018 5208 5.344207 ACTTGACACGCTTATTTTGAGAC 57.656 39.130 0.00 0.00 0.00 3.36
2068 5258 5.277345 CCCGAAACAAGTGTCTCAAGTTTAG 60.277 44.000 0.00 0.00 33.04 1.85
2072 5262 2.169769 TCCCGAAACAAGTGTCTCAAGT 59.830 45.455 0.00 0.00 0.00 3.16
2085 5275 6.210984 ACAATATACTCCCTCTATCCCGAAAC 59.789 42.308 0.00 0.00 0.00 2.78
2089 5279 6.239064 GCATACAATATACTCCCTCTATCCCG 60.239 46.154 0.00 0.00 0.00 5.14
2095 5285 7.093112 GGAAGATGCATACAATATACTCCCTCT 60.093 40.741 0.00 0.00 0.00 3.69
2138 5331 9.930693 ATATAACAACTTTATTTCCCGCAAAAA 57.069 25.926 0.00 0.00 0.00 1.94
2569 5888 5.517054 GCACAAGTTTCGGTTTTCATGTTTA 59.483 36.000 0.00 0.00 0.00 2.01
2652 5971 2.436646 AATGCCCACCGAGAAGCG 60.437 61.111 0.00 0.00 40.47 4.68
2784 6108 5.699097 ACGGCACACATAAAATTTACTGT 57.301 34.783 0.00 0.00 0.00 3.55
2803 6127 9.341899 CTAAATTGGAGTTAAATCTGAAAACGG 57.658 33.333 2.56 0.00 0.00 4.44
2932 6259 7.203255 AGGCTTACTGACTTTTGATAACAAC 57.797 36.000 0.00 0.00 35.63 3.32
2982 6309 0.665369 CGTTGGAGGTACACGGTGAC 60.665 60.000 16.29 8.49 0.00 3.67
2983 6310 1.661480 CGTTGGAGGTACACGGTGA 59.339 57.895 16.29 0.00 0.00 4.02
2984 6311 2.025418 GCGTTGGAGGTACACGGTG 61.025 63.158 6.58 6.58 0.00 4.94
2985 6312 2.341176 GCGTTGGAGGTACACGGT 59.659 61.111 5.04 0.00 0.00 4.83
2986 6313 2.433664 GGCGTTGGAGGTACACGG 60.434 66.667 5.04 0.00 0.00 4.94
2987 6314 2.807895 CGGCGTTGGAGGTACACG 60.808 66.667 0.00 0.00 0.00 4.49
2988 6315 1.445582 CTCGGCGTTGGAGGTACAC 60.446 63.158 6.85 0.00 0.00 2.90
2989 6316 2.642254 CCTCGGCGTTGGAGGTACA 61.642 63.158 6.85 0.00 44.92 2.90
2990 6317 2.183555 CCTCGGCGTTGGAGGTAC 59.816 66.667 6.85 0.00 44.92 3.34
2994 6321 3.019003 ATCACCCTCGGCGTTGGAG 62.019 63.158 20.85 14.38 0.00 3.86
2995 6322 3.000819 ATCACCCTCGGCGTTGGA 61.001 61.111 20.85 7.93 0.00 3.53
2996 6323 2.819595 CATCACCCTCGGCGTTGG 60.820 66.667 6.85 11.41 0.00 3.77
2997 6324 3.499737 GCATCACCCTCGGCGTTG 61.500 66.667 6.85 0.75 0.00 4.10
2998 6325 4.015406 TGCATCACCCTCGGCGTT 62.015 61.111 6.85 0.00 0.00 4.84
2999 6326 4.760047 GTGCATCACCCTCGGCGT 62.760 66.667 6.85 0.00 0.00 5.68
3008 6335 1.207593 GTGAGTTGCGGTGCATCAC 59.792 57.895 9.07 9.07 39.96 3.06
3009 6336 2.316867 CGTGAGTTGCGGTGCATCA 61.317 57.895 0.00 0.00 38.76 3.07
3010 6337 2.317609 ACGTGAGTTGCGGTGCATC 61.318 57.895 0.00 0.00 46.40 3.91
3011 6338 2.280797 ACGTGAGTTGCGGTGCAT 60.281 55.556 0.00 0.00 46.40 3.96
3022 6349 0.679505 TGGGTCTCCTTCAACGTGAG 59.320 55.000 0.00 0.00 0.00 3.51
3023 6350 0.679505 CTGGGTCTCCTTCAACGTGA 59.320 55.000 0.00 0.00 0.00 4.35
3024 6351 0.951040 GCTGGGTCTCCTTCAACGTG 60.951 60.000 0.00 0.00 0.00 4.49
3025 6352 1.371558 GCTGGGTCTCCTTCAACGT 59.628 57.895 0.00 0.00 0.00 3.99
3026 6353 1.376037 GGCTGGGTCTCCTTCAACG 60.376 63.158 0.00 0.00 0.00 4.10
3027 6354 1.376037 CGGCTGGGTCTCCTTCAAC 60.376 63.158 0.00 0.00 0.00 3.18
3028 6355 2.592993 CCGGCTGGGTCTCCTTCAA 61.593 63.158 2.57 0.00 0.00 2.69
3029 6356 3.003173 CCGGCTGGGTCTCCTTCA 61.003 66.667 2.57 0.00 0.00 3.02
3030 6357 2.245438 CTTCCGGCTGGGTCTCCTTC 62.245 65.000 12.87 0.00 37.00 3.46
3031 6358 2.203938 TTCCGGCTGGGTCTCCTT 60.204 61.111 12.87 0.00 37.00 3.36
3032 6359 2.685380 CTTCCGGCTGGGTCTCCT 60.685 66.667 12.87 0.00 37.00 3.69
3033 6360 4.475135 GCTTCCGGCTGGGTCTCC 62.475 72.222 12.87 0.00 38.06 3.71
3034 6361 4.821589 CGCTTCCGGCTGGGTCTC 62.822 72.222 12.87 0.00 39.13 3.36
3063 6390 2.635443 AAAAGCACCCGCCGGATTG 61.635 57.895 5.05 1.86 39.83 2.67
3064 6391 2.282887 AAAAGCACCCGCCGGATT 60.283 55.556 5.05 0.00 39.83 3.01
3065 6392 3.061848 CAAAAGCACCCGCCGGAT 61.062 61.111 5.05 0.00 39.83 4.18
3066 6393 4.257654 TCAAAAGCACCCGCCGGA 62.258 61.111 5.05 0.00 39.83 5.14
3067 6394 3.737172 CTCAAAAGCACCCGCCGG 61.737 66.667 0.00 0.00 39.83 6.13
3068 6395 3.737172 CCTCAAAAGCACCCGCCG 61.737 66.667 0.00 0.00 39.83 6.46
3069 6396 2.282180 TCCTCAAAAGCACCCGCC 60.282 61.111 0.00 0.00 39.83 6.13
3070 6397 2.626780 GGTCCTCAAAAGCACCCGC 61.627 63.158 0.00 0.00 38.99 6.13
3071 6398 1.971695 GGGTCCTCAAAAGCACCCG 60.972 63.158 0.00 0.00 39.32 5.28
3072 6399 1.971695 CGGGTCCTCAAAAGCACCC 60.972 63.158 0.00 0.00 44.67 4.61
3073 6400 0.536460 TTCGGGTCCTCAAAAGCACC 60.536 55.000 0.00 0.00 0.00 5.01
3074 6401 1.001706 GTTTCGGGTCCTCAAAAGCAC 60.002 52.381 0.00 0.00 0.00 4.40
3075 6402 1.314730 GTTTCGGGTCCTCAAAAGCA 58.685 50.000 0.00 0.00 0.00 3.91
3076 6403 0.596577 GGTTTCGGGTCCTCAAAAGC 59.403 55.000 0.00 0.00 0.00 3.51
3077 6404 1.244816 GGGTTTCGGGTCCTCAAAAG 58.755 55.000 0.00 0.00 0.00 2.27
3078 6405 0.178984 GGGGTTTCGGGTCCTCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
3079 6406 1.354168 TGGGGTTTCGGGTCCTCAAA 61.354 55.000 0.00 0.00 30.53 2.69
3080 6407 1.770927 TGGGGTTTCGGGTCCTCAA 60.771 57.895 0.00 0.00 30.53 3.02
3081 6408 2.122324 TGGGGTTTCGGGTCCTCA 60.122 61.111 0.00 0.00 0.00 3.86
3082 6409 2.350134 GTGGGGTTTCGGGTCCTC 59.650 66.667 0.00 0.00 0.00 3.71
3083 6410 2.448931 TGTGGGGTTTCGGGTCCT 60.449 61.111 0.00 0.00 0.00 3.85
3084 6411 2.281970 GTGTGGGGTTTCGGGTCC 60.282 66.667 0.00 0.00 0.00 4.46
3085 6412 2.667199 CGTGTGGGGTTTCGGGTC 60.667 66.667 0.00 0.00 0.00 4.46
3086 6413 4.941309 GCGTGTGGGGTTTCGGGT 62.941 66.667 0.00 0.00 0.00 5.28
3127 6454 3.202001 CAACCCATAGCCACCGCG 61.202 66.667 0.00 0.00 41.18 6.46
3128 6455 3.518068 GCAACCCATAGCCACCGC 61.518 66.667 0.00 0.00 0.00 5.68
3141 6468 1.218316 CAGGTCGACCTAGGGCAAC 59.782 63.158 35.80 6.21 46.65 4.17
3142 6469 0.325296 ATCAGGTCGACCTAGGGCAA 60.325 55.000 35.80 17.19 46.65 4.52
3143 6470 0.755698 GATCAGGTCGACCTAGGGCA 60.756 60.000 35.80 17.65 46.65 5.36
3144 6471 2.042800 GATCAGGTCGACCTAGGGC 58.957 63.158 35.80 20.91 46.65 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.