Multiple sequence alignment - TraesCS7B01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G340600 chr7B 100.000 3023 0 0 1 3023 595079572 595082594 0.000000e+00 5583.0
1 TraesCS7B01G340600 chr7B 87.772 1979 143 35 360 2275 595006810 595008752 0.000000e+00 2222.0
2 TraesCS7B01G340600 chr7B 86.650 1588 131 33 782 2341 595307136 595308670 0.000000e+00 1683.0
3 TraesCS7B01G340600 chr7B 88.506 1131 100 15 1479 2600 595172826 595173935 0.000000e+00 1341.0
4 TraesCS7B01G340600 chr7B 80.000 1100 88 59 122 1174 595165721 595166735 0.000000e+00 691.0
5 TraesCS7B01G340600 chr7B 90.278 216 7 6 566 775 595306708 595306915 1.380000e-68 270.0
6 TraesCS7B01G340600 chr7B 85.915 213 15 9 121 325 595306335 595306540 2.360000e-51 213.0
7 TraesCS7B01G340600 chr7B 84.422 199 22 2 1286 1484 595166773 595166962 1.430000e-43 187.0
8 TraesCS7B01G340600 chr7B 89.333 75 6 2 1 73 98763195 98763269 3.210000e-15 93.5
9 TraesCS7B01G340600 chr7A 86.894 1877 138 41 362 2192 636628426 636630240 0.000000e+00 2004.0
10 TraesCS7B01G340600 chr7A 89.924 1320 102 10 824 2121 636126716 636128026 0.000000e+00 1672.0
11 TraesCS7B01G340600 chr7A 87.881 1378 121 12 790 2132 635860145 635861511 0.000000e+00 1578.0
12 TraesCS7B01G340600 chr7A 86.087 345 36 10 2122 2464 635861622 635861956 7.970000e-96 361.0
13 TraesCS7B01G340600 chr7A 86.325 351 23 12 360 702 635859775 635860108 2.870000e-95 359.0
14 TraesCS7B01G340600 chr7A 85.393 356 17 15 360 702 636126326 636126659 1.340000e-88 337.0
15 TraesCS7B01G340600 chr7A 85.172 290 34 6 2249 2533 636206657 636206942 3.810000e-74 289.0
16 TraesCS7B01G340600 chr7A 87.912 182 15 5 144 325 636628251 636628425 1.100000e-49 207.0
17 TraesCS7B01G340600 chr7D 88.127 1735 128 31 415 2124 550462443 550464124 0.000000e+00 1991.0
18 TraesCS7B01G340600 chr7D 84.667 1774 140 59 360 2092 550552477 550554159 0.000000e+00 1648.0
19 TraesCS7B01G340600 chr7D 88.580 1296 103 15 912 2192 550800374 550801639 0.000000e+00 1531.0
20 TraesCS7B01G340600 chr7D 83.810 1118 118 21 1444 2540 550655437 550656512 0.000000e+00 1003.0
21 TraesCS7B01G340600 chr7D 84.915 1001 73 32 415 1389 550642709 550643657 0.000000e+00 941.0
22 TraesCS7B01G340600 chr7D 85.838 346 36 10 2119 2464 550464251 550464583 3.710000e-94 355.0
23 TraesCS7B01G340600 chr7D 87.419 310 20 10 566 870 550800080 550800375 3.730000e-89 339.0
24 TraesCS7B01G340600 chr7D 90.351 114 4 4 121 229 550799759 550799870 3.140000e-30 143.0
25 TraesCS7B01G340600 chr7D 91.489 94 3 4 13 103 11121482 11121391 1.140000e-24 124.0
26 TraesCS7B01G340600 chr3B 85.821 134 12 5 190 321 731097185 731097057 5.260000e-28 135.0
27 TraesCS7B01G340600 chr1A 94.030 67 4 0 1 67 64752136 64752202 5.330000e-18 102.0
28 TraesCS7B01G340600 chr5B 96.667 60 2 0 1 60 107947671 107947612 1.920000e-17 100.0
29 TraesCS7B01G340600 chr5A 93.846 65 3 1 1 64 490433688 490433752 2.480000e-16 97.1
30 TraesCS7B01G340600 chr5A 88.158 76 7 2 1 76 624732296 624732223 4.150000e-14 89.8
31 TraesCS7B01G340600 chr2A 93.846 65 3 1 2 66 559950626 559950563 2.480000e-16 97.1
32 TraesCS7B01G340600 chr1B 90.667 75 4 3 1 72 668095015 668094941 2.480000e-16 97.1
33 TraesCS7B01G340600 chr1D 87.654 81 8 1 1 79 411044003 411044083 3.210000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G340600 chr7B 595079572 595082594 3022 False 5583.0 5583 100.000000 1 3023 1 chr7B.!!$F3 3022
1 TraesCS7B01G340600 chr7B 595006810 595008752 1942 False 2222.0 2222 87.772000 360 2275 1 chr7B.!!$F2 1915
2 TraesCS7B01G340600 chr7B 595172826 595173935 1109 False 1341.0 1341 88.506000 1479 2600 1 chr7B.!!$F4 1121
3 TraesCS7B01G340600 chr7B 595306335 595308670 2335 False 722.0 1683 87.614333 121 2341 3 chr7B.!!$F6 2220
4 TraesCS7B01G340600 chr7B 595165721 595166962 1241 False 439.0 691 82.211000 122 1484 2 chr7B.!!$F5 1362
5 TraesCS7B01G340600 chr7A 636628251 636630240 1989 False 1105.5 2004 87.403000 144 2192 2 chr7A.!!$F4 2048
6 TraesCS7B01G340600 chr7A 636126326 636128026 1700 False 1004.5 1672 87.658500 360 2121 2 chr7A.!!$F3 1761
7 TraesCS7B01G340600 chr7A 635859775 635861956 2181 False 766.0 1578 86.764333 360 2464 3 chr7A.!!$F2 2104
8 TraesCS7B01G340600 chr7D 550552477 550554159 1682 False 1648.0 1648 84.667000 360 2092 1 chr7D.!!$F1 1732
9 TraesCS7B01G340600 chr7D 550462443 550464583 2140 False 1173.0 1991 86.982500 415 2464 2 chr7D.!!$F4 2049
10 TraesCS7B01G340600 chr7D 550655437 550656512 1075 False 1003.0 1003 83.810000 1444 2540 1 chr7D.!!$F3 1096
11 TraesCS7B01G340600 chr7D 550642709 550643657 948 False 941.0 941 84.915000 415 1389 1 chr7D.!!$F2 974
12 TraesCS7B01G340600 chr7D 550799759 550801639 1880 False 671.0 1531 88.783333 121 2192 3 chr7D.!!$F5 2071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 393 0.107848 CCCCGGCTTTCTACGTGATT 60.108 55.0 0.0 0.0 0.0 2.57 F
1477 1959 0.099436 GTCCATGATGCAGGCGAAAC 59.901 55.0 0.0 0.0 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2355 0.311790 CACGCCTTGCACATTCTTGT 59.688 50.0 0.0 0.0 36.15 3.16 R
2608 3271 0.326238 CCCTCCCCACTGGCTTACTA 60.326 60.0 0.0 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.538746 AAAAGGACGAAACCAAACCAAA 57.461 36.364 0.00 0.00 0.00 3.28
22 23 4.538746 AAAGGACGAAACCAAACCAAAA 57.461 36.364 0.00 0.00 0.00 2.44
23 24 4.538746 AAGGACGAAACCAAACCAAAAA 57.461 36.364 0.00 0.00 0.00 1.94
24 25 4.746535 AGGACGAAACCAAACCAAAAAT 57.253 36.364 0.00 0.00 0.00 1.82
25 26 5.855740 AGGACGAAACCAAACCAAAAATA 57.144 34.783 0.00 0.00 0.00 1.40
26 27 6.413783 AGGACGAAACCAAACCAAAAATAT 57.586 33.333 0.00 0.00 0.00 1.28
27 28 6.452242 AGGACGAAACCAAACCAAAAATATC 58.548 36.000 0.00 0.00 0.00 1.63
28 29 6.266786 AGGACGAAACCAAACCAAAAATATCT 59.733 34.615 0.00 0.00 0.00 1.98
29 30 7.449086 AGGACGAAACCAAACCAAAAATATCTA 59.551 33.333 0.00 0.00 0.00 1.98
30 31 8.248253 GGACGAAACCAAACCAAAAATATCTAT 58.752 33.333 0.00 0.00 0.00 1.98
31 32 9.634163 GACGAAACCAAACCAAAAATATCTATT 57.366 29.630 0.00 0.00 0.00 1.73
32 33 9.634163 ACGAAACCAAACCAAAAATATCTATTC 57.366 29.630 0.00 0.00 0.00 1.75
33 34 9.083080 CGAAACCAAACCAAAAATATCTATTCC 57.917 33.333 0.00 0.00 0.00 3.01
34 35 9.378551 GAAACCAAACCAAAAATATCTATTCCC 57.621 33.333 0.00 0.00 0.00 3.97
35 36 8.679344 AACCAAACCAAAAATATCTATTCCCT 57.321 30.769 0.00 0.00 0.00 4.20
36 37 8.679344 ACCAAACCAAAAATATCTATTCCCTT 57.321 30.769 0.00 0.00 0.00 3.95
37 38 9.111519 ACCAAACCAAAAATATCTATTCCCTTT 57.888 29.630 0.00 0.00 0.00 3.11
206 212 5.165676 TCAGGTAGCACATTAAAGTACGTG 58.834 41.667 0.00 0.00 33.06 4.49
211 217 3.547601 GCACATTAAAGTACGTGCGTTT 58.452 40.909 10.25 7.97 44.54 3.60
257 317 0.394938 AGGTGCATGAACGTGGTACA 59.605 50.000 0.00 0.00 0.00 2.90
310 370 2.603008 CCCCGAATTGCCCTCCAT 59.397 61.111 0.00 0.00 0.00 3.41
311 371 1.715019 CCCCCGAATTGCCCTCCATA 61.715 60.000 0.00 0.00 0.00 2.74
316 376 1.681264 CGAATTGCCCTCCATAAACCC 59.319 52.381 0.00 0.00 0.00 4.11
324 384 1.389555 CTCCATAAACCCCGGCTTTC 58.610 55.000 0.00 0.00 0.00 2.62
325 385 0.996583 TCCATAAACCCCGGCTTTCT 59.003 50.000 0.00 0.00 0.00 2.52
326 386 2.171870 CTCCATAAACCCCGGCTTTCTA 59.828 50.000 0.00 0.00 0.00 2.10
327 387 2.092807 TCCATAAACCCCGGCTTTCTAC 60.093 50.000 0.00 0.00 0.00 2.59
328 388 1.937899 CATAAACCCCGGCTTTCTACG 59.062 52.381 0.00 0.00 0.00 3.51
329 389 0.975887 TAAACCCCGGCTTTCTACGT 59.024 50.000 0.00 0.00 0.00 3.57
330 390 0.604511 AAACCCCGGCTTTCTACGTG 60.605 55.000 0.00 0.00 0.00 4.49
331 391 1.474332 AACCCCGGCTTTCTACGTGA 61.474 55.000 0.00 0.00 0.00 4.35
332 392 1.262640 ACCCCGGCTTTCTACGTGAT 61.263 55.000 0.00 0.00 0.00 3.06
333 393 0.107848 CCCCGGCTTTCTACGTGATT 60.108 55.000 0.00 0.00 0.00 2.57
334 394 1.287425 CCCGGCTTTCTACGTGATTC 58.713 55.000 0.00 0.00 0.00 2.52
335 395 1.287425 CCGGCTTTCTACGTGATTCC 58.713 55.000 0.00 0.00 0.00 3.01
336 396 1.287425 CGGCTTTCTACGTGATTCCC 58.713 55.000 0.00 0.00 0.00 3.97
337 397 1.287425 GGCTTTCTACGTGATTCCCG 58.713 55.000 0.00 0.00 0.00 5.14
338 398 1.134907 GGCTTTCTACGTGATTCCCGA 60.135 52.381 0.00 0.00 0.00 5.14
339 399 2.483188 GGCTTTCTACGTGATTCCCGAT 60.483 50.000 0.00 0.00 0.00 4.18
340 400 2.795470 GCTTTCTACGTGATTCCCGATC 59.205 50.000 0.00 0.00 35.21 3.69
341 401 3.491104 GCTTTCTACGTGATTCCCGATCT 60.491 47.826 0.00 0.00 35.69 2.75
342 402 3.984508 TTCTACGTGATTCCCGATCTC 57.015 47.619 0.00 0.00 35.69 2.75
343 403 3.210232 TCTACGTGATTCCCGATCTCT 57.790 47.619 0.00 0.00 35.69 3.10
344 404 3.139850 TCTACGTGATTCCCGATCTCTC 58.860 50.000 0.00 0.00 35.69 3.20
345 405 2.060050 ACGTGATTCCCGATCTCTCT 57.940 50.000 0.00 0.00 35.69 3.10
346 406 2.379972 ACGTGATTCCCGATCTCTCTT 58.620 47.619 0.00 0.00 35.69 2.85
347 407 2.761208 ACGTGATTCCCGATCTCTCTTT 59.239 45.455 0.00 0.00 35.69 2.52
348 408 3.195825 ACGTGATTCCCGATCTCTCTTTT 59.804 43.478 0.00 0.00 35.69 2.27
349 409 4.184629 CGTGATTCCCGATCTCTCTTTTT 58.815 43.478 0.00 0.00 35.69 1.94
389 450 4.099120 CGATCTTTACCAAGTCAGAGACG 58.901 47.826 0.00 0.00 37.67 4.18
416 497 4.780635 GCGCGTAATTTGTTTTGCTTTGTT 60.781 37.500 8.43 0.00 0.00 2.83
420 501 8.208560 CGCGTAATTTGTTTTGCTTTGTTATTA 58.791 29.630 0.00 0.00 0.00 0.98
452 537 2.290071 CCTAACACCCCAAGATTCGTGT 60.290 50.000 0.00 0.00 41.07 4.49
453 538 1.604604 AACACCCCAAGATTCGTGTG 58.395 50.000 0.00 0.00 39.33 3.82
454 539 0.889186 ACACCCCAAGATTCGTGTGC 60.889 55.000 0.00 0.00 38.02 4.57
455 540 1.671054 ACCCCAAGATTCGTGTGCG 60.671 57.895 0.00 0.00 39.92 5.34
456 541 1.671054 CCCCAAGATTCGTGTGCGT 60.671 57.895 0.00 0.00 39.49 5.24
457 542 1.497278 CCCAAGATTCGTGTGCGTG 59.503 57.895 0.00 0.00 39.49 5.34
480 578 3.555139 CAGAGATCAAAGGCTCAACGATC 59.445 47.826 0.00 0.00 33.62 3.69
517 626 6.319399 GCGCCACAACAATACTAACTTAAAT 58.681 36.000 0.00 0.00 0.00 1.40
518 627 6.804783 GCGCCACAACAATACTAACTTAAATT 59.195 34.615 0.00 0.00 0.00 1.82
553 676 1.345415 AGCCTTGGGTTCTGCAAATTG 59.655 47.619 0.00 0.00 0.00 2.32
554 677 1.344114 GCCTTGGGTTCTGCAAATTGA 59.656 47.619 0.00 0.00 0.00 2.57
578 702 4.098807 TCAACCGATCATGGAATTCGTCTA 59.901 41.667 0.00 0.00 0.00 2.59
589 716 3.459145 GAATTCGTCTAGAAGGAAGCCC 58.541 50.000 5.81 0.00 42.92 5.19
613 740 4.226761 CAATTTCGGTGCAGAAAGGTAAC 58.773 43.478 7.16 0.00 42.52 2.50
721 872 6.689663 AAGGAGAAGGATTAACTATAGGGC 57.310 41.667 4.43 0.00 0.00 5.19
722 873 5.095097 AGGAGAAGGATTAACTATAGGGCC 58.905 45.833 4.43 0.00 0.00 5.80
723 874 4.081586 GGAGAAGGATTAACTATAGGGCCG 60.082 50.000 4.43 0.00 0.00 6.13
724 875 3.838903 AGAAGGATTAACTATAGGGCCGG 59.161 47.826 4.43 0.00 0.00 6.13
725 876 3.271153 AGGATTAACTATAGGGCCGGT 57.729 47.619 1.90 0.00 0.00 5.28
726 877 3.171528 AGGATTAACTATAGGGCCGGTC 58.828 50.000 1.90 0.00 0.00 4.79
727 878 2.901839 GGATTAACTATAGGGCCGGTCA 59.098 50.000 9.07 0.00 0.00 4.02
729 880 4.019591 GGATTAACTATAGGGCCGGTCAAT 60.020 45.833 9.07 2.90 0.00 2.57
730 881 4.612264 TTAACTATAGGGCCGGTCAATC 57.388 45.455 9.07 0.00 0.00 2.67
731 882 2.400467 ACTATAGGGCCGGTCAATCT 57.600 50.000 9.07 0.00 0.00 2.40
732 883 2.249139 ACTATAGGGCCGGTCAATCTC 58.751 52.381 9.07 0.00 0.00 2.75
733 884 2.248248 CTATAGGGCCGGTCAATCTCA 58.752 52.381 9.07 0.00 0.00 3.27
734 885 1.734655 ATAGGGCCGGTCAATCTCAT 58.265 50.000 9.07 0.00 0.00 2.90
735 886 0.758734 TAGGGCCGGTCAATCTCATG 59.241 55.000 9.07 0.00 0.00 3.07
788 1153 2.111251 GCCAAGGATAGGGGACGC 59.889 66.667 0.00 0.00 0.00 5.19
824 1214 2.746277 GGTCACGCACCATGGTCC 60.746 66.667 16.53 4.59 45.98 4.46
825 1215 2.031919 GTCACGCACCATGGTCCA 59.968 61.111 16.53 0.00 0.00 4.02
826 1216 1.377202 GTCACGCACCATGGTCCAT 60.377 57.895 16.53 0.00 0.00 3.41
918 1334 2.044946 GCACCTCCCACCACATCC 60.045 66.667 0.00 0.00 0.00 3.51
1275 1729 1.755179 CCGGTGCTCAGGAAATGATT 58.245 50.000 0.00 0.00 37.28 2.57
1354 1808 2.669569 CCCACGCACAACAGGAGG 60.670 66.667 0.00 0.00 0.00 4.30
1356 1810 2.281070 CACGCACAACAGGAGGCT 60.281 61.111 0.00 0.00 0.00 4.58
1361 1815 1.432270 GCACAACAGGAGGCTATCGC 61.432 60.000 0.00 0.00 0.00 4.58
1461 1943 1.001048 GGCTTTTGTTAACCGTGGTCC 60.001 52.381 2.48 0.00 0.00 4.46
1477 1959 0.099436 GTCCATGATGCAGGCGAAAC 59.901 55.000 0.00 0.00 0.00 2.78
1523 2005 3.782244 GCAGAGCCACACGAAGCG 61.782 66.667 0.00 0.00 0.00 4.68
1524 2006 2.049156 CAGAGCCACACGAAGCGA 60.049 61.111 0.00 0.00 0.00 4.93
1617 2099 1.021390 CCATGAACTGGGCACTCGAC 61.021 60.000 0.00 0.00 41.82 4.20
1638 2120 1.743252 GCGCCTGAGGAACCTCTTG 60.743 63.158 19.61 12.34 43.12 3.02
1813 2301 3.316573 GAGAACCAGGTGCCCCTCG 62.317 68.421 0.00 0.00 39.89 4.63
1857 2345 2.772691 GGTAGTGGAGGAGCGTCCG 61.773 68.421 4.92 0.00 42.75 4.79
1870 2358 2.029964 GTCCGGCGACAGGAACAA 59.970 61.111 9.30 0.00 39.84 2.83
1874 2362 0.673644 CCGGCGACAGGAACAAGAAT 60.674 55.000 9.30 0.00 0.00 2.40
1887 2375 0.311790 CAAGAATGTGCAAGGCGTGT 59.688 50.000 1.69 0.00 0.00 4.49
1889 2377 0.534877 AGAATGTGCAAGGCGTGTCA 60.535 50.000 1.69 2.88 0.00 3.58
2133 2630 0.101579 GTTGTTGTTGTTGACGGGGG 59.898 55.000 0.00 0.00 0.00 5.40
2178 2812 6.784473 TGGTTGGATGACATAGATATGAGAGT 59.216 38.462 6.84 0.00 37.15 3.24
2234 2875 5.988310 TTTGCTGAATCTGTTGGATCAAT 57.012 34.783 0.00 0.00 32.76 2.57
2238 2879 5.477637 TGCTGAATCTGTTGGATCAATTTGA 59.522 36.000 0.75 0.75 32.76 2.69
2261 2912 5.576447 TCAACAAGGAGAAAAACAGTTCC 57.424 39.130 0.00 0.00 0.00 3.62
2286 2938 2.933495 TTGCAGATCAATGCTTGAGC 57.067 45.000 8.27 6.17 46.63 4.26
2324 2977 9.884465 GATTAGAAGTTGAACAACATATATGGC 57.116 33.333 16.96 2.08 43.47 4.40
2348 3001 0.242825 GTCTAAGGGTTTTTGCGGCC 59.757 55.000 0.00 0.00 0.00 6.13
2374 3027 2.783135 TGGTGAAGCAGGTCAAAGATC 58.217 47.619 0.00 0.00 0.00 2.75
2375 3028 2.106338 TGGTGAAGCAGGTCAAAGATCA 59.894 45.455 0.00 0.00 0.00 2.92
2403 3058 3.435327 CGATTCAGATCCAACGGTCAAAA 59.565 43.478 0.00 0.00 0.00 2.44
2404 3059 4.094887 CGATTCAGATCCAACGGTCAAAAT 59.905 41.667 0.00 0.00 0.00 1.82
2405 3060 5.293324 CGATTCAGATCCAACGGTCAAAATA 59.707 40.000 0.00 0.00 0.00 1.40
2406 3061 6.017934 CGATTCAGATCCAACGGTCAAAATAT 60.018 38.462 0.00 0.00 0.00 1.28
2451 3106 1.407258 CTTCGTTGGCAAAAGGTTGGA 59.593 47.619 0.00 0.00 35.10 3.53
2466 3121 6.564557 AAGGTTGGATGCCAAAATTCATAT 57.435 33.333 0.00 0.00 45.73 1.78
2468 3123 5.058490 GGTTGGATGCCAAAATTCATATGG 58.942 41.667 2.13 0.00 45.73 2.74
2469 3124 5.163322 GGTTGGATGCCAAAATTCATATGGA 60.163 40.000 2.13 0.00 45.73 3.41
2566 3229 2.032528 TCGGCTGGCAAGAGGTTG 59.967 61.111 1.08 0.00 36.67 3.77
2577 3240 2.288213 GCAAGAGGTTGGTTGCCTAAAC 60.288 50.000 0.00 0.00 42.73 2.01
2587 3250 3.800929 GTTGCCTAAACTCGTACAACC 57.199 47.619 0.00 0.00 35.75 3.77
2591 3254 3.560896 TGCCTAAACTCGTACAACCAAAC 59.439 43.478 0.00 0.00 0.00 2.93
2600 3263 8.836268 AACTCGTACAACCAAACATATAGAAA 57.164 30.769 0.00 0.00 0.00 2.52
2601 3264 8.836268 ACTCGTACAACCAAACATATAGAAAA 57.164 30.769 0.00 0.00 0.00 2.29
2602 3265 8.715088 ACTCGTACAACCAAACATATAGAAAAC 58.285 33.333 0.00 0.00 0.00 2.43
2603 3266 8.836268 TCGTACAACCAAACATATAGAAAACT 57.164 30.769 0.00 0.00 0.00 2.66
2604 3267 9.275398 TCGTACAACCAAACATATAGAAAACTT 57.725 29.630 0.00 0.00 0.00 2.66
2605 3268 9.537848 CGTACAACCAAACATATAGAAAACTTC 57.462 33.333 0.00 0.00 0.00 3.01
2606 3269 9.836076 GTACAACCAAACATATAGAAAACTTCC 57.164 33.333 0.00 0.00 0.00 3.46
2607 3270 8.472007 ACAACCAAACATATAGAAAACTTCCA 57.528 30.769 0.00 0.00 0.00 3.53
2608 3271 9.088987 ACAACCAAACATATAGAAAACTTCCAT 57.911 29.630 0.00 0.00 0.00 3.41
2611 3274 9.975218 ACCAAACATATAGAAAACTTCCATAGT 57.025 29.630 0.00 0.00 39.32 2.12
2616 3279 9.780186 ACATATAGAAAACTTCCATAGTAAGCC 57.220 33.333 0.00 0.00 35.54 4.35
2617 3280 9.778741 CATATAGAAAACTTCCATAGTAAGCCA 57.221 33.333 0.00 0.00 35.54 4.75
2619 3282 6.128138 AGAAAACTTCCATAGTAAGCCAGT 57.872 37.500 0.00 0.00 35.54 4.00
2620 3283 5.940470 AGAAAACTTCCATAGTAAGCCAGTG 59.060 40.000 0.00 0.00 35.54 3.66
2621 3284 3.914426 ACTTCCATAGTAAGCCAGTGG 57.086 47.619 4.20 4.20 34.56 4.00
2622 3285 2.505819 ACTTCCATAGTAAGCCAGTGGG 59.494 50.000 12.15 0.00 34.56 4.61
2623 3286 1.507140 TCCATAGTAAGCCAGTGGGG 58.493 55.000 12.15 0.46 40.85 4.96
2624 3287 1.009060 TCCATAGTAAGCCAGTGGGGA 59.991 52.381 12.15 3.19 40.01 4.81
2625 3288 1.417890 CCATAGTAAGCCAGTGGGGAG 59.582 57.143 12.15 0.00 40.01 4.30
2626 3289 1.417890 CATAGTAAGCCAGTGGGGAGG 59.582 57.143 12.15 0.00 40.01 4.30
2627 3290 0.326238 TAGTAAGCCAGTGGGGAGGG 60.326 60.000 12.15 0.00 40.01 4.30
2632 3295 4.133373 CCAGTGGGGAGGGCCATG 62.133 72.222 6.18 0.00 40.01 3.66
2633 3296 4.133373 CAGTGGGGAGGGCCATGG 62.133 72.222 7.63 7.63 35.15 3.66
2644 3307 4.722700 GCCATGGCGACCACCAGT 62.723 66.667 23.48 0.00 44.71 4.00
2645 3308 2.034066 CCATGGCGACCACCAGTT 59.966 61.111 0.00 0.00 44.71 3.16
2646 3309 2.334946 CCATGGCGACCACCAGTTG 61.335 63.158 0.00 0.00 44.71 3.16
2655 3318 1.747774 CCACCAGTTGGCCAAAAGG 59.252 57.895 27.53 27.53 39.07 3.11
2656 3319 1.069596 CACCAGTTGGCCAAAAGGC 59.930 57.895 28.56 14.99 39.32 4.35
2668 3331 3.857052 GCCAAAAGGCCCACTAAATAAC 58.143 45.455 0.00 0.00 0.00 1.89
2669 3332 3.259625 GCCAAAAGGCCCACTAAATAACA 59.740 43.478 0.00 0.00 0.00 2.41
2670 3333 4.081142 GCCAAAAGGCCCACTAAATAACAT 60.081 41.667 0.00 0.00 0.00 2.71
2671 3334 5.570641 GCCAAAAGGCCCACTAAATAACATT 60.571 40.000 0.00 0.00 0.00 2.71
2672 3335 6.472016 CCAAAAGGCCCACTAAATAACATTT 58.528 36.000 0.00 0.00 0.00 2.32
2673 3336 6.593770 CCAAAAGGCCCACTAAATAACATTTC 59.406 38.462 0.00 0.00 0.00 2.17
2674 3337 7.386059 CAAAAGGCCCACTAAATAACATTTCT 58.614 34.615 0.00 0.00 0.00 2.52
2675 3338 7.553504 AAAGGCCCACTAAATAACATTTCTT 57.446 32.000 0.00 0.00 0.00 2.52
2676 3339 7.553504 AAGGCCCACTAAATAACATTTCTTT 57.446 32.000 0.00 0.00 0.00 2.52
2677 3340 7.553504 AGGCCCACTAAATAACATTTCTTTT 57.446 32.000 0.00 0.00 0.00 2.27
2678 3341 8.658840 AGGCCCACTAAATAACATTTCTTTTA 57.341 30.769 0.00 0.00 0.00 1.52
2679 3342 8.749354 AGGCCCACTAAATAACATTTCTTTTAG 58.251 33.333 0.00 0.00 37.56 1.85
2680 3343 8.745590 GGCCCACTAAATAACATTTCTTTTAGA 58.254 33.333 0.00 0.00 35.94 2.10
2692 3355 9.558396 AACATTTCTTTTAGAAAATGCCATGAA 57.442 25.926 6.01 0.00 46.08 2.57
2693 3356 9.729281 ACATTTCTTTTAGAAAATGCCATGAAT 57.271 25.926 6.01 0.00 46.08 2.57
2708 3371 9.609950 AATGCCATGAATAAAAATTTGAAAACG 57.390 25.926 0.00 0.00 0.00 3.60
2709 3372 8.370493 TGCCATGAATAAAAATTTGAAAACGA 57.630 26.923 0.00 0.00 0.00 3.85
2710 3373 8.830580 TGCCATGAATAAAAATTTGAAAACGAA 58.169 25.926 0.00 0.00 0.00 3.85
2711 3374 9.657121 GCCATGAATAAAAATTTGAAAACGAAA 57.343 25.926 0.00 0.00 0.00 3.46
2731 3394 3.557228 AAAATGCCAGAAAAGTTGCCA 57.443 38.095 0.00 0.00 0.00 4.92
2732 3395 3.775261 AAATGCCAGAAAAGTTGCCAT 57.225 38.095 0.00 0.00 0.00 4.40
2733 3396 2.754946 ATGCCAGAAAAGTTGCCATG 57.245 45.000 0.00 0.00 0.00 3.66
2734 3397 1.412079 TGCCAGAAAAGTTGCCATGT 58.588 45.000 0.00 0.00 0.00 3.21
2735 3398 1.761784 TGCCAGAAAAGTTGCCATGTT 59.238 42.857 0.00 0.00 0.00 2.71
2736 3399 2.224018 TGCCAGAAAAGTTGCCATGTTC 60.224 45.455 0.00 0.00 0.00 3.18
2737 3400 2.036346 GCCAGAAAAGTTGCCATGTTCT 59.964 45.455 0.00 0.00 0.00 3.01
2738 3401 3.493176 GCCAGAAAAGTTGCCATGTTCTT 60.493 43.478 0.00 0.00 0.00 2.52
2739 3402 4.261994 GCCAGAAAAGTTGCCATGTTCTTA 60.262 41.667 0.00 0.00 0.00 2.10
2740 3403 5.464168 CCAGAAAAGTTGCCATGTTCTTAG 58.536 41.667 0.00 0.00 0.00 2.18
2741 3404 4.919754 CAGAAAAGTTGCCATGTTCTTAGC 59.080 41.667 0.00 0.00 0.00 3.09
2742 3405 3.942130 AAAGTTGCCATGTTCTTAGCC 57.058 42.857 0.00 0.00 0.00 3.93
2743 3406 2.584835 AGTTGCCATGTTCTTAGCCA 57.415 45.000 0.00 0.00 0.00 4.75
2744 3407 3.091633 AGTTGCCATGTTCTTAGCCAT 57.908 42.857 0.00 0.00 0.00 4.40
2745 3408 3.019564 AGTTGCCATGTTCTTAGCCATC 58.980 45.455 0.00 0.00 0.00 3.51
2746 3409 2.754552 GTTGCCATGTTCTTAGCCATCA 59.245 45.455 0.00 0.00 0.00 3.07
2747 3410 3.301794 TGCCATGTTCTTAGCCATCAT 57.698 42.857 0.00 0.00 0.00 2.45
2748 3411 2.953648 TGCCATGTTCTTAGCCATCATG 59.046 45.455 0.00 0.00 36.60 3.07
2752 3415 5.840243 CATGTTCTTAGCCATCATGGAAA 57.160 39.130 8.30 0.00 40.96 3.13
2753 3416 6.211587 CATGTTCTTAGCCATCATGGAAAA 57.788 37.500 8.30 0.00 40.96 2.29
2754 3417 5.643379 TGTTCTTAGCCATCATGGAAAAC 57.357 39.130 8.30 4.18 40.96 2.43
2755 3418 5.076182 TGTTCTTAGCCATCATGGAAAACA 58.924 37.500 8.30 6.75 40.96 2.83
2756 3419 5.048083 TGTTCTTAGCCATCATGGAAAACAC 60.048 40.000 8.30 1.30 40.96 3.32
2757 3420 4.922206 TCTTAGCCATCATGGAAAACACT 58.078 39.130 8.30 0.00 40.96 3.55
2758 3421 5.324409 TCTTAGCCATCATGGAAAACACTT 58.676 37.500 8.30 0.00 40.96 3.16
2759 3422 5.774690 TCTTAGCCATCATGGAAAACACTTT 59.225 36.000 8.30 0.00 40.96 2.66
2760 3423 4.261578 AGCCATCATGGAAAACACTTTG 57.738 40.909 8.30 0.00 40.96 2.77
2761 3424 2.738314 GCCATCATGGAAAACACTTTGC 59.262 45.455 8.30 0.00 40.96 3.68
2762 3425 3.803021 GCCATCATGGAAAACACTTTGCA 60.803 43.478 8.30 0.00 45.53 4.08
2763 3426 4.378774 CCATCATGGAAAACACTTTGCAA 58.621 39.130 0.00 0.00 44.75 4.08
2764 3427 4.815308 CCATCATGGAAAACACTTTGCAAA 59.185 37.500 12.14 12.14 44.75 3.68
2765 3428 5.296283 CCATCATGGAAAACACTTTGCAAAA 59.704 36.000 13.84 0.00 44.75 2.44
2766 3429 6.183360 CCATCATGGAAAACACTTTGCAAAAA 60.183 34.615 13.84 0.00 44.75 1.94
2790 3453 6.902224 AAAGTGACAGTAAACAAAAATGCC 57.098 33.333 0.00 0.00 0.00 4.40
2791 3454 5.590530 AGTGACAGTAAACAAAAATGCCA 57.409 34.783 0.00 0.00 0.00 4.92
2792 3455 5.348164 AGTGACAGTAAACAAAAATGCCAC 58.652 37.500 0.00 0.00 0.00 5.01
2793 3456 4.506288 GTGACAGTAAACAAAAATGCCACC 59.494 41.667 0.00 0.00 0.00 4.61
2794 3457 4.404073 TGACAGTAAACAAAAATGCCACCT 59.596 37.500 0.00 0.00 0.00 4.00
2795 3458 4.944048 ACAGTAAACAAAAATGCCACCTC 58.056 39.130 0.00 0.00 0.00 3.85
2796 3459 4.202212 ACAGTAAACAAAAATGCCACCTCC 60.202 41.667 0.00 0.00 0.00 4.30
2797 3460 2.928801 AAACAAAAATGCCACCTCCC 57.071 45.000 0.00 0.00 0.00 4.30
2798 3461 1.799933 AACAAAAATGCCACCTCCCA 58.200 45.000 0.00 0.00 0.00 4.37
2799 3462 1.799933 ACAAAAATGCCACCTCCCAA 58.200 45.000 0.00 0.00 0.00 4.12
2800 3463 2.337849 ACAAAAATGCCACCTCCCAAT 58.662 42.857 0.00 0.00 0.00 3.16
2801 3464 3.515562 ACAAAAATGCCACCTCCCAATA 58.484 40.909 0.00 0.00 0.00 1.90
2802 3465 4.103342 ACAAAAATGCCACCTCCCAATAT 58.897 39.130 0.00 0.00 0.00 1.28
2803 3466 4.080975 ACAAAAATGCCACCTCCCAATATG 60.081 41.667 0.00 0.00 0.00 1.78
2804 3467 3.686227 AAATGCCACCTCCCAATATGA 57.314 42.857 0.00 0.00 0.00 2.15
2805 3468 3.686227 AATGCCACCTCCCAATATGAA 57.314 42.857 0.00 0.00 0.00 2.57
2806 3469 3.686227 ATGCCACCTCCCAATATGAAA 57.314 42.857 0.00 0.00 0.00 2.69
2807 3470 3.464720 TGCCACCTCCCAATATGAAAA 57.535 42.857 0.00 0.00 0.00 2.29
2808 3471 3.784178 TGCCACCTCCCAATATGAAAAA 58.216 40.909 0.00 0.00 0.00 1.94
2809 3472 4.360889 TGCCACCTCCCAATATGAAAAAT 58.639 39.130 0.00 0.00 0.00 1.82
2810 3473 4.161942 TGCCACCTCCCAATATGAAAAATG 59.838 41.667 0.00 0.00 0.00 2.32
2811 3474 4.405358 GCCACCTCCCAATATGAAAAATGA 59.595 41.667 0.00 0.00 0.00 2.57
2812 3475 5.682212 GCCACCTCCCAATATGAAAAATGAC 60.682 44.000 0.00 0.00 0.00 3.06
2813 3476 5.450412 CCACCTCCCAATATGAAAAATGACG 60.450 44.000 0.00 0.00 0.00 4.35
2814 3477 5.125417 CACCTCCCAATATGAAAAATGACGT 59.875 40.000 0.00 0.00 0.00 4.34
2815 3478 5.357032 ACCTCCCAATATGAAAAATGACGTC 59.643 40.000 9.11 9.11 0.00 4.34
2816 3479 5.221048 CCTCCCAATATGAAAAATGACGTCC 60.221 44.000 14.12 0.00 0.00 4.79
2817 3480 5.505780 TCCCAATATGAAAAATGACGTCCT 58.494 37.500 14.12 0.00 0.00 3.85
2818 3481 5.588648 TCCCAATATGAAAAATGACGTCCTC 59.411 40.000 14.12 2.66 0.00 3.71
2819 3482 5.590259 CCCAATATGAAAAATGACGTCCTCT 59.410 40.000 14.12 0.00 0.00 3.69
2820 3483 6.095440 CCCAATATGAAAAATGACGTCCTCTT 59.905 38.462 14.12 0.99 0.00 2.85
2821 3484 7.282224 CCCAATATGAAAAATGACGTCCTCTTA 59.718 37.037 14.12 5.23 0.00 2.10
2822 3485 8.673711 CCAATATGAAAAATGACGTCCTCTTAA 58.326 33.333 14.12 0.00 0.00 1.85
2928 3591 8.870075 ACCATCCTCTTATAATAAGAAATGCC 57.130 34.615 0.00 0.00 0.00 4.40
2929 3592 8.448008 ACCATCCTCTTATAATAAGAAATGCCA 58.552 33.333 0.00 0.00 0.00 4.92
2930 3593 9.471702 CCATCCTCTTATAATAAGAAATGCCAT 57.528 33.333 0.00 0.00 0.00 4.40
2964 3627 8.804912 AATAAAAATGCCCAAATAGAATGCAA 57.195 26.923 0.00 0.00 35.30 4.08
2965 3628 8.804912 ATAAAAATGCCCAAATAGAATGCAAA 57.195 26.923 0.00 0.00 35.30 3.68
2966 3629 7.521871 AAAAATGCCCAAATAGAATGCAAAA 57.478 28.000 0.00 0.00 35.30 2.44
2967 3630 7.521871 AAAATGCCCAAATAGAATGCAAAAA 57.478 28.000 0.00 0.00 35.30 1.94
2968 3631 6.746745 AATGCCCAAATAGAATGCAAAAAG 57.253 33.333 0.00 0.00 35.30 2.27
2969 3632 5.480642 TGCCCAAATAGAATGCAAAAAGA 57.519 34.783 0.00 0.00 0.00 2.52
2970 3633 5.862845 TGCCCAAATAGAATGCAAAAAGAA 58.137 33.333 0.00 0.00 0.00 2.52
2971 3634 6.294473 TGCCCAAATAGAATGCAAAAAGAAA 58.706 32.000 0.00 0.00 0.00 2.52
2972 3635 6.941436 TGCCCAAATAGAATGCAAAAAGAAAT 59.059 30.769 0.00 0.00 0.00 2.17
2973 3636 7.119553 TGCCCAAATAGAATGCAAAAAGAAATC 59.880 33.333 0.00 0.00 0.00 2.17
2974 3637 7.335171 GCCCAAATAGAATGCAAAAAGAAATCT 59.665 33.333 0.00 0.00 0.00 2.40
2975 3638 8.876790 CCCAAATAGAATGCAAAAAGAAATCTC 58.123 33.333 0.00 0.00 0.00 2.75
2976 3639 9.426837 CCAAATAGAATGCAAAAAGAAATCTCA 57.573 29.630 0.00 0.00 0.00 3.27
2984 3647 9.738832 AATGCAAAAAGAAATCTCAAATTTTGG 57.261 25.926 9.18 1.05 37.90 3.28
2985 3648 7.705214 TGCAAAAAGAAATCTCAAATTTTGGG 58.295 30.769 9.18 5.97 37.90 4.12
2986 3649 7.555554 TGCAAAAAGAAATCTCAAATTTTGGGA 59.444 29.630 13.86 13.86 45.76 4.37
2987 3650 7.857389 GCAAAAAGAAATCTCAAATTTTGGGAC 59.143 33.333 13.78 2.28 44.23 4.46
2988 3651 8.891720 CAAAAAGAAATCTCAAATTTTGGGACA 58.108 29.630 13.78 0.00 44.23 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.538746 TTTGGTTTGGTTTCGTCCTTTT 57.461 36.364 0.00 0.00 0.00 2.27
1 2 4.538746 TTTTGGTTTGGTTTCGTCCTTT 57.461 36.364 0.00 0.00 0.00 3.11
2 3 4.538746 TTTTTGGTTTGGTTTCGTCCTT 57.461 36.364 0.00 0.00 0.00 3.36
3 4 4.746535 ATTTTTGGTTTGGTTTCGTCCT 57.253 36.364 0.00 0.00 0.00 3.85
4 5 6.452242 AGATATTTTTGGTTTGGTTTCGTCC 58.548 36.000 0.00 0.00 0.00 4.79
5 6 9.634163 AATAGATATTTTTGGTTTGGTTTCGTC 57.366 29.630 0.00 0.00 0.00 4.20
6 7 9.634163 GAATAGATATTTTTGGTTTGGTTTCGT 57.366 29.630 0.00 0.00 0.00 3.85
7 8 9.083080 GGAATAGATATTTTTGGTTTGGTTTCG 57.917 33.333 0.00 0.00 0.00 3.46
8 9 9.378551 GGGAATAGATATTTTTGGTTTGGTTTC 57.621 33.333 0.00 0.00 0.00 2.78
9 10 9.111519 AGGGAATAGATATTTTTGGTTTGGTTT 57.888 29.630 0.00 0.00 0.00 3.27
10 11 8.679344 AGGGAATAGATATTTTTGGTTTGGTT 57.321 30.769 0.00 0.00 0.00 3.67
11 12 8.679344 AAGGGAATAGATATTTTTGGTTTGGT 57.321 30.769 0.00 0.00 0.00 3.67
206 212 2.285084 GCACTACGCTCAGAATAAACGC 60.285 50.000 0.00 0.00 37.77 4.84
211 217 2.159114 TGCATGCACTACGCTCAGAATA 60.159 45.455 18.46 0.00 43.06 1.75
240 295 3.482923 CGTTATGTACCACGTTCATGCAC 60.483 47.826 0.00 0.00 0.00 4.57
241 296 2.668945 CGTTATGTACCACGTTCATGCA 59.331 45.455 0.00 0.00 0.00 3.96
242 297 2.536130 GCGTTATGTACCACGTTCATGC 60.536 50.000 10.08 0.00 38.70 4.06
243 298 2.284798 CGCGTTATGTACCACGTTCATG 60.285 50.000 0.00 0.00 38.70 3.07
244 299 1.921887 CGCGTTATGTACCACGTTCAT 59.078 47.619 0.00 0.00 38.70 2.57
245 300 1.338765 CGCGTTATGTACCACGTTCA 58.661 50.000 0.00 0.00 38.70 3.18
248 304 1.806758 GGCGCGTTATGTACCACGT 60.807 57.895 8.43 0.00 38.70 4.49
252 308 0.247379 CGTTTGGCGCGTTATGTACC 60.247 55.000 8.43 0.00 0.00 3.34
278 338 1.036707 CGGGGGAAAAAGAAACTGCA 58.963 50.000 0.00 0.00 0.00 4.41
279 339 1.324383 TCGGGGGAAAAAGAAACTGC 58.676 50.000 0.00 0.00 0.00 4.40
280 340 4.306600 CAATTCGGGGGAAAAAGAAACTG 58.693 43.478 0.00 0.00 0.00 3.16
281 341 3.244078 GCAATTCGGGGGAAAAAGAAACT 60.244 43.478 0.00 0.00 0.00 2.66
290 350 2.680965 GAGGGCAATTCGGGGGAA 59.319 61.111 0.00 0.00 0.00 3.97
292 352 1.715019 TATGGAGGGCAATTCGGGGG 61.715 60.000 0.00 0.00 0.00 5.40
310 370 0.975887 ACGTAGAAAGCCGGGGTTTA 59.024 50.000 23.00 7.11 33.25 2.01
311 371 0.604511 CACGTAGAAAGCCGGGGTTT 60.605 55.000 23.14 23.14 35.90 3.27
316 376 1.287425 GGAATCACGTAGAAAGCCGG 58.713 55.000 0.00 0.00 0.00 6.13
324 384 3.142951 AGAGAGATCGGGAATCACGTAG 58.857 50.000 4.33 0.00 36.79 3.51
325 385 3.210232 AGAGAGATCGGGAATCACGTA 57.790 47.619 4.33 0.00 36.79 3.57
326 386 2.060050 AGAGAGATCGGGAATCACGT 57.940 50.000 4.33 0.00 36.79 4.49
327 387 3.444703 AAAGAGAGATCGGGAATCACG 57.555 47.619 0.00 0.00 36.79 4.35
355 415 8.767776 CTTGGTAAAGATCGGGAATCACCCTT 62.768 46.154 0.00 0.00 45.29 3.95
356 416 7.383824 CTTGGTAAAGATCGGGAATCACCCT 62.384 48.000 0.00 0.00 45.29 4.34
357 417 5.221940 CTTGGTAAAGATCGGGAATCACCC 61.222 50.000 0.00 0.00 44.62 4.61
358 418 3.553828 TGGTAAAGATCGGGAATCACC 57.446 47.619 0.00 0.00 36.79 4.02
389 450 2.338520 GCAAAACAAATTACGCGCTCTC 59.661 45.455 5.73 0.00 0.00 3.20
420 501 7.935405 TCTTGGGGTGTTAGGAAACTTATAAT 58.065 34.615 0.00 0.00 43.67 1.28
434 519 1.604604 CACACGAATCTTGGGGTGTT 58.395 50.000 0.00 0.00 41.34 3.32
452 537 1.300971 GCCTTTGATCTCTGCACGCA 61.301 55.000 0.00 0.00 0.00 5.24
453 538 1.023513 AGCCTTTGATCTCTGCACGC 61.024 55.000 0.00 0.00 0.00 5.34
454 539 1.005340 GAGCCTTTGATCTCTGCACG 58.995 55.000 0.00 0.00 0.00 5.34
455 540 2.105006 TGAGCCTTTGATCTCTGCAC 57.895 50.000 0.00 0.00 0.00 4.57
456 541 2.430465 GTTGAGCCTTTGATCTCTGCA 58.570 47.619 0.00 0.00 0.00 4.41
457 542 1.396301 CGTTGAGCCTTTGATCTCTGC 59.604 52.381 0.00 0.00 0.00 4.26
480 578 4.481112 GGCGCCAAATCAGCACGG 62.481 66.667 24.80 0.00 0.00 4.94
517 626 2.051692 AGGCTGGCCATATACGGTAAA 58.948 47.619 5.51 0.00 38.92 2.01
518 627 1.724545 AGGCTGGCCATATACGGTAA 58.275 50.000 5.51 0.00 38.92 2.85
522 641 0.606401 CCCAAGGCTGGCCATATACG 60.606 60.000 5.51 0.00 41.99 3.06
554 677 3.808728 ACGAATTCCATGATCGGTTGAT 58.191 40.909 0.00 0.00 40.71 2.57
578 702 1.177401 GAAATTGCGGGCTTCCTTCT 58.823 50.000 0.00 0.00 0.00 2.85
589 716 1.330306 CTTTCTGCACCGAAATTGCG 58.670 50.000 0.00 0.00 43.34 4.85
717 868 0.982852 TCATGAGATTGACCGGCCCT 60.983 55.000 0.00 0.00 0.00 5.19
721 872 3.740631 TGAGATCATGAGATTGACCGG 57.259 47.619 0.00 0.00 33.72 5.28
722 873 5.136816 AGATGAGATCATGAGATTGACCG 57.863 43.478 0.09 0.00 36.57 4.79
723 874 6.522946 TGAAGATGAGATCATGAGATTGACC 58.477 40.000 0.09 0.00 36.57 4.02
724 875 7.211573 ACTGAAGATGAGATCATGAGATTGAC 58.788 38.462 0.09 0.00 36.57 3.18
725 876 7.362802 ACTGAAGATGAGATCATGAGATTGA 57.637 36.000 0.09 0.00 36.57 2.57
726 877 7.519168 GCAACTGAAGATGAGATCATGAGATTG 60.519 40.741 0.09 0.00 36.57 2.67
727 878 6.483974 GCAACTGAAGATGAGATCATGAGATT 59.516 38.462 0.09 0.00 36.57 2.40
729 880 5.128991 AGCAACTGAAGATGAGATCATGAGA 59.871 40.000 0.09 0.00 36.57 3.27
730 881 5.361427 AGCAACTGAAGATGAGATCATGAG 58.639 41.667 0.09 0.00 36.57 2.90
731 882 5.354842 AGCAACTGAAGATGAGATCATGA 57.645 39.130 0.00 0.00 36.57 3.07
732 883 6.316640 AGAAAGCAACTGAAGATGAGATCATG 59.683 38.462 0.00 0.00 36.57 3.07
733 884 6.416415 AGAAAGCAACTGAAGATGAGATCAT 58.584 36.000 0.00 0.00 39.70 2.45
734 885 5.802465 AGAAAGCAACTGAAGATGAGATCA 58.198 37.500 0.00 0.00 0.00 2.92
735 886 5.873712 TGAGAAAGCAACTGAAGATGAGATC 59.126 40.000 0.00 0.00 0.00 2.75
775 926 2.521224 GTCCGCGTCCCCTATCCT 60.521 66.667 4.92 0.00 0.00 3.24
788 1153 2.333581 GGTTTTGGTTGGCGTCCG 59.666 61.111 0.00 0.00 0.00 4.79
820 1210 1.892209 CAGCCGGGTATTTATGGACC 58.108 55.000 5.47 0.00 34.75 4.46
821 1211 1.235724 GCAGCCGGGTATTTATGGAC 58.764 55.000 5.47 0.00 0.00 4.02
822 1212 0.109723 GGCAGCCGGGTATTTATGGA 59.890 55.000 5.47 0.00 0.00 3.41
823 1213 0.110486 AGGCAGCCGGGTATTTATGG 59.890 55.000 5.47 0.00 0.00 2.74
824 1214 1.238439 CAGGCAGCCGGGTATTTATG 58.762 55.000 5.47 0.00 0.00 1.90
825 1215 0.537371 GCAGGCAGCCGGGTATTTAT 60.537 55.000 14.06 0.00 37.23 1.40
826 1216 1.153046 GCAGGCAGCCGGGTATTTA 60.153 57.895 14.06 0.00 37.23 1.40
918 1334 4.203076 CCCGGCCGGAGTTAGTCG 62.203 72.222 45.44 22.17 37.50 4.18
983 1404 3.936772 ATGGCGTTTGATGGGGCGT 62.937 57.895 0.00 0.00 0.00 5.68
1031 1455 2.654877 CGCCGGTGGTGAGTAACT 59.345 61.111 7.26 0.00 34.74 2.24
1256 1710 1.755179 AATCATTTCCTGAGCACCGG 58.245 50.000 0.00 0.00 37.28 5.28
1275 1729 3.960237 CGCTTCCGCTTGTTGGTA 58.040 55.556 0.00 0.00 0.00 3.25
1461 1943 1.089112 TCTGTTTCGCCTGCATCATG 58.911 50.000 0.00 0.00 0.00 3.07
1477 1959 2.002586 CGCCAAAGTAGTCCACATCTG 58.997 52.381 0.00 0.00 0.00 2.90
1520 2002 4.554363 CGGCCGAGACGATTCGCT 62.554 66.667 24.07 4.36 35.20 4.93
1523 2005 2.582498 CCACGGCCGAGACGATTC 60.582 66.667 35.90 0.00 35.20 2.52
1524 2006 3.064987 CTCCACGGCCGAGACGATT 62.065 63.158 35.90 3.57 35.20 3.34
1611 2093 3.805307 CTCAGGCGCTCGTCGAGT 61.805 66.667 22.61 0.50 41.67 4.18
1617 2099 3.708220 GAGGTTCCTCAGGCGCTCG 62.708 68.421 7.64 0.00 33.58 5.03
1638 2120 0.534652 GCCACATCTGAGCCTCCATC 60.535 60.000 0.00 0.00 0.00 3.51
1857 2345 1.197721 CACATTCTTGTTCCTGTCGCC 59.802 52.381 0.00 0.00 32.34 5.54
1867 2355 0.311790 CACGCCTTGCACATTCTTGT 59.688 50.000 0.00 0.00 36.15 3.16
1870 2358 0.534877 TGACACGCCTTGCACATTCT 60.535 50.000 0.00 0.00 0.00 2.40
1874 2362 3.268603 CGTGACACGCCTTGCACA 61.269 61.111 16.06 0.00 33.65 4.57
2133 2630 5.833340 ACCATCCTCCTATCTACCTATCAC 58.167 45.833 0.00 0.00 0.00 3.06
2210 2850 5.381174 TGATCCAACAGATTCAGCAAAAG 57.619 39.130 0.00 0.00 34.42 2.27
2234 2875 7.169158 ACTGTTTTTCTCCTTGTTGATCAAA 57.831 32.000 10.35 0.00 35.48 2.69
2238 2879 5.893824 AGGAACTGTTTTTCTCCTTGTTGAT 59.106 36.000 0.00 0.00 37.18 2.57
2247 2888 7.387948 TCTGCAATACTAGGAACTGTTTTTCTC 59.612 37.037 0.00 0.00 41.52 2.87
2324 2977 2.601266 CGCAAAAACCCTTAGACACACG 60.601 50.000 0.00 0.00 0.00 4.49
2348 3001 2.124570 CCTGCTTCACCATCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
2374 3027 4.496341 CCGTTGGATCTGAATCGGATTTTG 60.496 45.833 5.98 1.62 40.29 2.44
2375 3028 3.627577 CCGTTGGATCTGAATCGGATTTT 59.372 43.478 5.98 0.00 40.29 1.82
2406 3061 9.651913 AGCAAAAATTCTTTAAGTTCAAGTCAA 57.348 25.926 0.00 0.00 0.00 3.18
2416 3071 6.019156 TGCCAACGAAGCAAAAATTCTTTAAG 60.019 34.615 0.00 0.00 37.28 1.85
2434 3089 1.782044 CATCCAACCTTTTGCCAACG 58.218 50.000 0.00 0.00 0.00 4.10
2496 3159 9.246670 TCAATCTTTGGACAATTGTATCTGATT 57.753 29.630 11.95 13.87 33.22 2.57
2497 3160 8.812513 TCAATCTTTGGACAATTGTATCTGAT 57.187 30.769 11.95 9.01 33.22 2.90
2504 3167 9.563748 AATTCAAATCAATCTTTGGACAATTGT 57.436 25.926 11.78 11.78 36.87 2.71
2535 3198 2.094545 CCAGCCGAGCTAGCAAATTTTT 60.095 45.455 18.83 0.00 36.40 1.94
2546 3209 4.093291 CCTCTTGCCAGCCGAGCT 62.093 66.667 0.00 0.00 40.77 4.09
2547 3210 3.909086 AACCTCTTGCCAGCCGAGC 62.909 63.158 0.00 0.00 0.00 5.03
2548 3211 2.037136 CAACCTCTTGCCAGCCGAG 61.037 63.158 0.00 0.51 0.00 4.63
2549 3212 2.032528 CAACCTCTTGCCAGCCGA 59.967 61.111 0.00 0.00 0.00 5.54
2550 3213 3.058160 CCAACCTCTTGCCAGCCG 61.058 66.667 0.00 0.00 0.00 5.52
2551 3214 1.531602 AACCAACCTCTTGCCAGCC 60.532 57.895 0.00 0.00 0.00 4.85
2566 3229 2.481568 GGTTGTACGAGTTTAGGCAACC 59.518 50.000 8.24 8.24 45.59 3.77
2577 3240 8.932791 AGTTTTCTATATGTTTGGTTGTACGAG 58.067 33.333 0.00 0.00 0.00 4.18
2591 3254 9.778741 TGGCTTACTATGGAAGTTTTCTATATG 57.221 33.333 0.00 0.00 39.80 1.78
2600 3263 3.054361 CCCACTGGCTTACTATGGAAGTT 60.054 47.826 0.00 0.00 39.80 2.66
2601 3264 2.505819 CCCACTGGCTTACTATGGAAGT 59.494 50.000 0.00 0.00 42.62 3.01
2602 3265 2.158755 CCCCACTGGCTTACTATGGAAG 60.159 54.545 0.00 0.00 31.69 3.46
2603 3266 1.843851 CCCCACTGGCTTACTATGGAA 59.156 52.381 0.00 0.00 31.69 3.53
2604 3267 1.009060 TCCCCACTGGCTTACTATGGA 59.991 52.381 0.00 0.00 31.69 3.41
2605 3268 1.417890 CTCCCCACTGGCTTACTATGG 59.582 57.143 0.00 0.00 0.00 2.74
2606 3269 1.417890 CCTCCCCACTGGCTTACTATG 59.582 57.143 0.00 0.00 0.00 2.23
2607 3270 1.695989 CCCTCCCCACTGGCTTACTAT 60.696 57.143 0.00 0.00 0.00 2.12
2608 3271 0.326238 CCCTCCCCACTGGCTTACTA 60.326 60.000 0.00 0.00 0.00 1.82
2609 3272 1.616628 CCCTCCCCACTGGCTTACT 60.617 63.158 0.00 0.00 0.00 2.24
2610 3273 2.998949 CCCTCCCCACTGGCTTAC 59.001 66.667 0.00 0.00 0.00 2.34
2611 3274 3.015145 GCCCTCCCCACTGGCTTA 61.015 66.667 0.00 0.00 42.01 3.09
2615 3278 4.133373 CATGGCCCTCCCCACTGG 62.133 72.222 0.00 0.00 37.79 4.00
2616 3279 4.133373 CCATGGCCCTCCCCACTG 62.133 72.222 0.00 0.00 37.79 3.66
2627 3290 4.722700 ACTGGTGGTCGCCATGGC 62.723 66.667 27.67 27.67 37.96 4.40
2628 3291 2.034066 AACTGGTGGTCGCCATGG 59.966 61.111 7.63 7.63 37.96 3.66
2629 3292 2.334946 CCAACTGGTGGTCGCCATG 61.335 63.158 2.79 0.89 43.20 3.66
2630 3293 2.034066 CCAACTGGTGGTCGCCAT 59.966 61.111 2.79 0.00 43.20 4.40
2648 3311 5.675684 ATGTTATTTAGTGGGCCTTTTGG 57.324 39.130 4.53 0.00 44.18 3.28
2649 3312 7.386059 AGAAATGTTATTTAGTGGGCCTTTTG 58.614 34.615 4.53 0.00 0.00 2.44
2650 3313 7.553504 AGAAATGTTATTTAGTGGGCCTTTT 57.446 32.000 4.53 0.00 0.00 2.27
2651 3314 7.553504 AAGAAATGTTATTTAGTGGGCCTTT 57.446 32.000 4.53 0.00 0.00 3.11
2652 3315 7.553504 AAAGAAATGTTATTTAGTGGGCCTT 57.446 32.000 4.53 0.00 0.00 4.35
2653 3316 7.553504 AAAAGAAATGTTATTTAGTGGGCCT 57.446 32.000 4.53 0.00 0.00 5.19
2654 3317 8.745590 TCTAAAAGAAATGTTATTTAGTGGGCC 58.254 33.333 0.00 0.00 36.93 5.80
2666 3329 9.558396 TTCATGGCATTTTCTAAAAGAAATGTT 57.442 25.926 0.00 0.00 43.06 2.71
2667 3330 9.729281 ATTCATGGCATTTTCTAAAAGAAATGT 57.271 25.926 0.00 0.00 43.06 2.71
2682 3345 9.609950 CGTTTTCAAATTTTTATTCATGGCATT 57.390 25.926 0.00 0.00 0.00 3.56
2683 3346 8.997323 TCGTTTTCAAATTTTTATTCATGGCAT 58.003 25.926 0.00 0.00 0.00 4.40
2684 3347 8.370493 TCGTTTTCAAATTTTTATTCATGGCA 57.630 26.923 0.00 0.00 0.00 4.92
2685 3348 9.657121 TTTCGTTTTCAAATTTTTATTCATGGC 57.343 25.926 0.00 0.00 0.00 4.40
2710 3373 3.883669 TGGCAACTTTTCTGGCATTTTT 58.116 36.364 0.00 0.00 43.68 1.94
2711 3374 3.557228 TGGCAACTTTTCTGGCATTTT 57.443 38.095 0.00 0.00 43.68 1.82
2716 3379 2.036346 AGAACATGGCAACTTTTCTGGC 59.964 45.455 0.00 0.00 39.69 4.85
2717 3380 4.326504 AAGAACATGGCAACTTTTCTGG 57.673 40.909 0.00 0.00 37.61 3.86
2718 3381 4.919754 GCTAAGAACATGGCAACTTTTCTG 59.080 41.667 0.00 0.00 37.61 3.02
2719 3382 4.021981 GGCTAAGAACATGGCAACTTTTCT 60.022 41.667 0.00 0.00 37.61 2.52
2720 3383 4.237724 GGCTAAGAACATGGCAACTTTTC 58.762 43.478 0.00 0.00 37.61 2.29
2721 3384 3.640967 TGGCTAAGAACATGGCAACTTTT 59.359 39.130 0.00 0.00 33.38 2.27
2722 3385 3.230134 TGGCTAAGAACATGGCAACTTT 58.770 40.909 0.00 0.00 33.38 2.66
2723 3386 2.875296 TGGCTAAGAACATGGCAACTT 58.125 42.857 0.00 0.00 33.38 2.66
2724 3387 2.584835 TGGCTAAGAACATGGCAACT 57.415 45.000 0.00 0.00 33.38 3.16
2725 3388 2.754552 TGATGGCTAAGAACATGGCAAC 59.245 45.455 0.00 0.00 39.59 4.17
2726 3389 3.084536 TGATGGCTAAGAACATGGCAA 57.915 42.857 0.00 0.00 39.59 4.52
2727 3390 2.804986 TGATGGCTAAGAACATGGCA 57.195 45.000 0.00 0.00 40.41 4.92
2728 3391 2.295349 CCATGATGGCTAAGAACATGGC 59.705 50.000 0.00 0.00 46.84 4.40
2730 3393 5.840243 TTTCCATGATGGCTAAGAACATG 57.160 39.130 6.59 0.00 37.47 3.21
2731 3394 5.716228 TGTTTTCCATGATGGCTAAGAACAT 59.284 36.000 6.59 0.00 37.47 2.71
2732 3395 5.048083 GTGTTTTCCATGATGGCTAAGAACA 60.048 40.000 6.59 5.21 37.47 3.18
2733 3396 5.183904 AGTGTTTTCCATGATGGCTAAGAAC 59.816 40.000 6.59 2.55 37.47 3.01
2734 3397 5.324409 AGTGTTTTCCATGATGGCTAAGAA 58.676 37.500 6.59 0.00 37.47 2.52
2735 3398 4.922206 AGTGTTTTCCATGATGGCTAAGA 58.078 39.130 6.59 0.00 37.47 2.10
2736 3399 5.649782 AAGTGTTTTCCATGATGGCTAAG 57.350 39.130 6.59 0.00 37.47 2.18
2737 3400 5.782047 CAAAGTGTTTTCCATGATGGCTAA 58.218 37.500 6.59 0.49 37.47 3.09
2738 3401 4.321899 GCAAAGTGTTTTCCATGATGGCTA 60.322 41.667 6.59 0.00 37.47 3.93
2739 3402 3.555586 GCAAAGTGTTTTCCATGATGGCT 60.556 43.478 6.59 0.00 37.47 4.75
2740 3403 2.738314 GCAAAGTGTTTTCCATGATGGC 59.262 45.455 6.59 0.00 37.47 4.40
2741 3404 3.992643 TGCAAAGTGTTTTCCATGATGG 58.007 40.909 4.74 4.74 39.43 3.51
2742 3405 5.987777 TTTGCAAAGTGTTTTCCATGATG 57.012 34.783 8.05 0.00 0.00 3.07
2743 3406 6.998968 TTTTTGCAAAGTGTTTTCCATGAT 57.001 29.167 12.41 0.00 0.00 2.45
2765 3428 7.389053 TGGCATTTTTGTTTACTGTCACTTTTT 59.611 29.630 0.00 0.00 0.00 1.94
2766 3429 6.876257 TGGCATTTTTGTTTACTGTCACTTTT 59.124 30.769 0.00 0.00 0.00 2.27
2767 3430 6.312672 GTGGCATTTTTGTTTACTGTCACTTT 59.687 34.615 0.00 0.00 38.91 2.66
2768 3431 5.810074 GTGGCATTTTTGTTTACTGTCACTT 59.190 36.000 0.00 0.00 38.91 3.16
2769 3432 5.348164 GTGGCATTTTTGTTTACTGTCACT 58.652 37.500 0.00 0.00 38.91 3.41
2770 3433 4.506288 GGTGGCATTTTTGTTTACTGTCAC 59.494 41.667 0.00 0.00 40.71 3.67
2771 3434 4.404073 AGGTGGCATTTTTGTTTACTGTCA 59.596 37.500 0.00 0.00 0.00 3.58
2772 3435 4.944048 AGGTGGCATTTTTGTTTACTGTC 58.056 39.130 0.00 0.00 0.00 3.51
2773 3436 4.202212 GGAGGTGGCATTTTTGTTTACTGT 60.202 41.667 0.00 0.00 0.00 3.55
2774 3437 4.306600 GGAGGTGGCATTTTTGTTTACTG 58.693 43.478 0.00 0.00 0.00 2.74
2775 3438 3.323691 GGGAGGTGGCATTTTTGTTTACT 59.676 43.478 0.00 0.00 0.00 2.24
2776 3439 3.070302 TGGGAGGTGGCATTTTTGTTTAC 59.930 43.478 0.00 0.00 0.00 2.01
2777 3440 3.309296 TGGGAGGTGGCATTTTTGTTTA 58.691 40.909 0.00 0.00 0.00 2.01
2778 3441 2.122768 TGGGAGGTGGCATTTTTGTTT 58.877 42.857 0.00 0.00 0.00 2.83
2779 3442 1.799933 TGGGAGGTGGCATTTTTGTT 58.200 45.000 0.00 0.00 0.00 2.83
2780 3443 1.799933 TTGGGAGGTGGCATTTTTGT 58.200 45.000 0.00 0.00 0.00 2.83
2781 3444 4.161942 TCATATTGGGAGGTGGCATTTTTG 59.838 41.667 0.00 0.00 0.00 2.44
2782 3445 4.360889 TCATATTGGGAGGTGGCATTTTT 58.639 39.130 0.00 0.00 0.00 1.94
2783 3446 3.992999 TCATATTGGGAGGTGGCATTTT 58.007 40.909 0.00 0.00 0.00 1.82
2784 3447 3.686227 TCATATTGGGAGGTGGCATTT 57.314 42.857 0.00 0.00 0.00 2.32
2785 3448 3.686227 TTCATATTGGGAGGTGGCATT 57.314 42.857 0.00 0.00 0.00 3.56
2786 3449 3.686227 TTTCATATTGGGAGGTGGCAT 57.314 42.857 0.00 0.00 0.00 4.40
2787 3450 3.464720 TTTTCATATTGGGAGGTGGCA 57.535 42.857 0.00 0.00 0.00 4.92
2788 3451 4.405358 TCATTTTTCATATTGGGAGGTGGC 59.595 41.667 0.00 0.00 0.00 5.01
2789 3452 5.450412 CGTCATTTTTCATATTGGGAGGTGG 60.450 44.000 0.00 0.00 0.00 4.61
2790 3453 5.125417 ACGTCATTTTTCATATTGGGAGGTG 59.875 40.000 0.00 0.00 0.00 4.00
2791 3454 5.261216 ACGTCATTTTTCATATTGGGAGGT 58.739 37.500 0.00 0.00 0.00 3.85
2792 3455 5.221048 GGACGTCATTTTTCATATTGGGAGG 60.221 44.000 18.91 0.00 0.00 4.30
2793 3456 5.590259 AGGACGTCATTTTTCATATTGGGAG 59.410 40.000 18.91 0.00 0.00 4.30
2794 3457 5.505780 AGGACGTCATTTTTCATATTGGGA 58.494 37.500 18.91 0.00 0.00 4.37
2795 3458 5.590259 AGAGGACGTCATTTTTCATATTGGG 59.410 40.000 18.91 0.00 0.00 4.12
2796 3459 6.683974 AGAGGACGTCATTTTTCATATTGG 57.316 37.500 18.91 0.00 0.00 3.16
2902 3565 9.959721 GGCATTTCTTATTATAAGAGGATGGTA 57.040 33.333 24.79 8.42 0.00 3.25
2903 3566 8.448008 TGGCATTTCTTATTATAAGAGGATGGT 58.552 33.333 24.79 8.50 0.00 3.55
2904 3567 8.868522 TGGCATTTCTTATTATAAGAGGATGG 57.131 34.615 24.79 14.02 0.00 3.51
2938 3601 9.896645 TTGCATTCTATTTGGGCATTTTTATTA 57.103 25.926 0.00 0.00 34.03 0.98
2939 3602 8.804912 TTGCATTCTATTTGGGCATTTTTATT 57.195 26.923 0.00 0.00 34.03 1.40
2940 3603 8.804912 TTTGCATTCTATTTGGGCATTTTTAT 57.195 26.923 0.00 0.00 34.03 1.40
2941 3604 8.627208 TTTTGCATTCTATTTGGGCATTTTTA 57.373 26.923 0.00 0.00 34.03 1.52
2942 3605 7.521871 TTTTGCATTCTATTTGGGCATTTTT 57.478 28.000 0.00 0.00 34.03 1.94
2943 3606 7.447853 TCTTTTTGCATTCTATTTGGGCATTTT 59.552 29.630 0.00 0.00 34.03 1.82
2944 3607 6.941436 TCTTTTTGCATTCTATTTGGGCATTT 59.059 30.769 0.00 0.00 34.03 2.32
2945 3608 6.474630 TCTTTTTGCATTCTATTTGGGCATT 58.525 32.000 0.00 0.00 34.03 3.56
2946 3609 6.052405 TCTTTTTGCATTCTATTTGGGCAT 57.948 33.333 0.00 0.00 34.03 4.40
2947 3610 5.480642 TCTTTTTGCATTCTATTTGGGCA 57.519 34.783 0.00 0.00 0.00 5.36
2948 3611 6.799926 TTTCTTTTTGCATTCTATTTGGGC 57.200 33.333 0.00 0.00 0.00 5.36
2949 3612 8.782339 AGATTTCTTTTTGCATTCTATTTGGG 57.218 30.769 0.00 0.00 0.00 4.12
2950 3613 9.426837 TGAGATTTCTTTTTGCATTCTATTTGG 57.573 29.630 0.00 0.00 0.00 3.28
2958 3621 9.738832 CCAAAATTTGAGATTTCTTTTTGCATT 57.261 25.926 7.37 0.00 34.40 3.56
2959 3622 8.354426 CCCAAAATTTGAGATTTCTTTTTGCAT 58.646 29.630 7.37 0.00 34.40 3.96
2960 3623 7.555554 TCCCAAAATTTGAGATTTCTTTTTGCA 59.444 29.630 7.37 0.00 34.40 4.08
2961 3624 7.857389 GTCCCAAAATTTGAGATTTCTTTTTGC 59.143 33.333 7.37 0.00 34.40 3.68
2962 3625 8.891720 TGTCCCAAAATTTGAGATTTCTTTTTG 58.108 29.630 7.37 7.67 35.11 2.44
2963 3626 9.460019 TTGTCCCAAAATTTGAGATTTCTTTTT 57.540 25.926 7.37 0.00 0.00 1.94
2964 3627 9.631257 ATTGTCCCAAAATTTGAGATTTCTTTT 57.369 25.926 7.37 0.00 0.00 2.27
2965 3628 9.631257 AATTGTCCCAAAATTTGAGATTTCTTT 57.369 25.926 7.37 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.