Multiple sequence alignment - TraesCS7B01G340500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G340500 chr7B 100.000 3045 0 0 1 3045 595006450 595009494 0.000000e+00 5624.0
1 TraesCS7B01G340500 chr7B 87.772 1979 143 35 361 2303 595079931 595081846 0.000000e+00 2222.0
2 TraesCS7B01G340500 chr7B 87.321 1538 112 42 786 2306 595307136 595308607 0.000000e+00 1683.0
3 TraesCS7B01G340500 chr7B 90.830 807 52 8 1500 2300 595172825 595173615 0.000000e+00 1061.0
4 TraesCS7B01G340500 chr7B 83.200 1125 81 36 116 1189 595165671 595166738 0.000000e+00 931.0
5 TraesCS7B01G340500 chr7B 84.203 747 84 19 2324 3043 622642825 622642086 0.000000e+00 695.0
6 TraesCS7B01G340500 chr7B 78.963 694 56 40 116 779 595306282 595306915 1.020000e-104 390.0
7 TraesCS7B01G340500 chr7B 77.593 723 102 40 2369 3043 517929045 517929755 1.710000e-102 383.0
8 TraesCS7B01G340500 chr7B 87.279 283 31 4 2763 3043 525879263 525878984 4.900000e-83 318.0
9 TraesCS7B01G340500 chr7B 91.228 114 8 2 2754 2866 517929533 517929645 1.460000e-33 154.0
10 TraesCS7B01G340500 chr7D 90.081 1976 101 33 192 2149 550462228 550464126 0.000000e+00 2475.0
11 TraesCS7B01G340500 chr7D 88.307 2044 106 35 116 2114 550552204 550554159 0.000000e+00 2327.0
12 TraesCS7B01G340500 chr7D 88.518 1289 90 26 913 2187 550800374 550801618 0.000000e+00 1507.0
13 TraesCS7B01G340500 chr7D 88.852 1220 67 23 192 1398 550642494 550643657 0.000000e+00 1435.0
14 TraesCS7B01G340500 chr7D 87.816 870 58 11 1424 2288 550655396 550656222 0.000000e+00 976.0
15 TraesCS7B01G340500 chr7D 82.447 564 45 23 307 867 550799863 550800375 7.750000e-121 444.0
16 TraesCS7B01G340500 chr7D 78.911 716 94 37 2369 3043 489291498 489292197 1.680000e-117 433.0
17 TraesCS7B01G340500 chr7D 82.822 163 12 10 2142 2303 550554352 550554499 6.850000e-27 132.0
18 TraesCS7B01G340500 chr7D 84.884 86 10 2 190 273 550799776 550799860 1.950000e-12 84.2
19 TraesCS7B01G340500 chr7A 86.511 2135 151 59 116 2187 636628159 636630219 0.000000e+00 2220.0
20 TraesCS7B01G340500 chr7A 91.472 1372 99 10 794 2152 635860145 635861511 0.000000e+00 1869.0
21 TraesCS7B01G340500 chr7A 90.828 1341 86 16 816 2144 636126711 636128026 0.000000e+00 1760.0
22 TraesCS7B01G340500 chr7A 90.526 475 23 10 235 706 635859647 635860102 2.600000e-170 608.0
23 TraesCS7B01G340500 chr7A 88.258 528 31 12 191 712 636126157 636126659 1.210000e-168 603.0
24 TraesCS7B01G340500 chr7A 78.691 718 95 38 2369 3043 569074204 569073502 2.810000e-115 425.0
25 TraesCS7B01G340500 chr7A 86.598 388 39 6 2369 2744 163375892 163375506 1.690000e-112 416.0
26 TraesCS7B01G340500 chr7A 86.000 400 36 8 2387 2775 125981702 125982092 7.860000e-111 411.0
27 TraesCS7B01G340500 chr7A 86.387 382 40 6 2369 2739 543618286 543617906 1.020000e-109 407.0
28 TraesCS7B01G340500 chr7A 85.530 387 42 7 2370 2744 669638908 669638524 2.850000e-105 392.0
29 TraesCS7B01G340500 chr7A 92.336 274 18 3 2771 3043 125984432 125984703 1.320000e-103 387.0
30 TraesCS7B01G340500 chr7A 85.013 387 38 9 2370 2744 459208323 459207945 2.870000e-100 375.0
31 TraesCS7B01G340500 chr7A 75.055 453 76 26 2598 3031 568688389 568688823 3.120000e-40 176.0
32 TraesCS7B01G340500 chr7A 92.035 113 8 1 2754 2866 568140977 568141088 1.130000e-34 158.0
33 TraesCS7B01G340500 chr7A 84.314 153 12 7 2152 2303 636141468 636141609 4.090000e-29 139.0
34 TraesCS7B01G340500 chr7A 81.595 163 12 10 2142 2303 635861622 635861767 5.330000e-23 119.0
35 TraesCS7B01G340500 chr7A 84.746 118 4 5 116 233 635859380 635859483 4.150000e-19 106.0
36 TraesCS7B01G340500 chr2B 87.373 689 62 15 2369 3043 507927486 507926809 0.000000e+00 767.0
37 TraesCS7B01G340500 chrUn 88.133 632 55 10 2396 3014 95810294 95809670 0.000000e+00 734.0
38 TraesCS7B01G340500 chr1B 84.056 646 55 18 2414 3043 660235183 660234570 2.040000e-161 579.0
39 TraesCS7B01G340500 chr5D 86.598 388 39 6 2369 2744 515643852 515643466 1.690000e-112 416.0
40 TraesCS7B01G340500 chr6B 85.901 383 41 7 2369 2739 67405965 67406346 2.200000e-106 396.0
41 TraesCS7B01G340500 chr1A 85.751 386 40 8 2369 2741 535411400 535411783 7.910000e-106 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G340500 chr7B 595006450 595009494 3044 False 5624.0 5624 100.00000 1 3045 1 chr7B.!!$F1 3044
1 TraesCS7B01G340500 chr7B 595079931 595081846 1915 False 2222.0 2222 87.77200 361 2303 1 chr7B.!!$F2 1942
2 TraesCS7B01G340500 chr7B 595172825 595173615 790 False 1061.0 1061 90.83000 1500 2300 1 chr7B.!!$F4 800
3 TraesCS7B01G340500 chr7B 595306282 595308607 2325 False 1036.5 1683 83.14200 116 2306 2 chr7B.!!$F6 2190
4 TraesCS7B01G340500 chr7B 595165671 595166738 1067 False 931.0 931 83.20000 116 1189 1 chr7B.!!$F3 1073
5 TraesCS7B01G340500 chr7B 622642086 622642825 739 True 695.0 695 84.20300 2324 3043 1 chr7B.!!$R2 719
6 TraesCS7B01G340500 chr7B 517929045 517929755 710 False 268.5 383 84.41050 2369 3043 2 chr7B.!!$F5 674
7 TraesCS7B01G340500 chr7D 550462228 550464126 1898 False 2475.0 2475 90.08100 192 2149 1 chr7D.!!$F2 1957
8 TraesCS7B01G340500 chr7D 550642494 550643657 1163 False 1435.0 1435 88.85200 192 1398 1 chr7D.!!$F3 1206
9 TraesCS7B01G340500 chr7D 550552204 550554499 2295 False 1229.5 2327 85.56450 116 2303 2 chr7D.!!$F5 2187
10 TraesCS7B01G340500 chr7D 550655396 550656222 826 False 976.0 976 87.81600 1424 2288 1 chr7D.!!$F4 864
11 TraesCS7B01G340500 chr7D 550799776 550801618 1842 False 678.4 1507 85.28300 190 2187 3 chr7D.!!$F6 1997
12 TraesCS7B01G340500 chr7D 489291498 489292197 699 False 433.0 433 78.91100 2369 3043 1 chr7D.!!$F1 674
13 TraesCS7B01G340500 chr7A 636628159 636630219 2060 False 2220.0 2220 86.51100 116 2187 1 chr7A.!!$F4 2071
14 TraesCS7B01G340500 chr7A 636126157 636128026 1869 False 1181.5 1760 89.54300 191 2144 2 chr7A.!!$F7 1953
15 TraesCS7B01G340500 chr7A 635859380 635861767 2387 False 675.5 1869 87.08475 116 2303 4 chr7A.!!$F6 2187
16 TraesCS7B01G340500 chr7A 569073502 569074204 702 True 425.0 425 78.69100 2369 3043 1 chr7A.!!$R4 674
17 TraesCS7B01G340500 chr7A 125981702 125984703 3001 False 399.0 411 89.16800 2387 3043 2 chr7A.!!$F5 656
18 TraesCS7B01G340500 chr2B 507926809 507927486 677 True 767.0 767 87.37300 2369 3043 1 chr2B.!!$R1 674
19 TraesCS7B01G340500 chrUn 95809670 95810294 624 True 734.0 734 88.13300 2396 3014 1 chrUn.!!$R1 618
20 TraesCS7B01G340500 chr1B 660234570 660235183 613 True 579.0 579 84.05600 2414 3043 1 chr1B.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 795 0.035317 TGCGTGCAGAGATCAAAGGT 59.965 50.0 0.00 0.00 0.00 3.50 F
613 958 0.109597 CCAGCAATTTCGGTGCAGAC 60.110 55.0 0.00 0.00 44.74 3.51 F
1438 2125 0.248661 ACCGTCTCGATCGATGCTTG 60.249 55.0 19.78 6.62 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 2106 0.248661 CAAGCATCGATCGAGACGGT 60.249 55.0 23.84 16.08 0.00 4.83 R
1657 2361 0.257039 ACATCTGGGCCTCCATGAAC 59.743 55.0 4.53 0.00 43.11 3.18 R
2326 3338 0.671251 CCGGTAAAAAGTGGCTTGCA 59.329 50.0 0.00 0.00 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.911514 ACAAGCTTATTTGTTTGGTCGT 57.088 36.364 0.00 0.00 38.05 4.34
27 28 5.257082 ACAAGCTTATTTGTTTGGTCGTT 57.743 34.783 0.00 0.00 38.05 3.85
28 29 5.278604 ACAAGCTTATTTGTTTGGTCGTTC 58.721 37.500 0.00 0.00 38.05 3.95
29 30 4.141855 AGCTTATTTGTTTGGTCGTTCG 57.858 40.909 0.00 0.00 0.00 3.95
30 31 3.562557 AGCTTATTTGTTTGGTCGTTCGT 59.437 39.130 0.00 0.00 0.00 3.85
31 32 4.035909 AGCTTATTTGTTTGGTCGTTCGTT 59.964 37.500 0.00 0.00 0.00 3.85
32 33 5.236911 AGCTTATTTGTTTGGTCGTTCGTTA 59.763 36.000 0.00 0.00 0.00 3.18
33 34 5.337773 GCTTATTTGTTTGGTCGTTCGTTAC 59.662 40.000 0.00 0.00 0.00 2.50
34 35 6.601741 TTATTTGTTTGGTCGTTCGTTACT 57.398 33.333 0.00 0.00 0.00 2.24
35 36 3.929417 TTGTTTGGTCGTTCGTTACTG 57.071 42.857 0.00 0.00 0.00 2.74
36 37 2.891112 TGTTTGGTCGTTCGTTACTGT 58.109 42.857 0.00 0.00 0.00 3.55
37 38 3.260740 TGTTTGGTCGTTCGTTACTGTT 58.739 40.909 0.00 0.00 0.00 3.16
38 39 3.683822 TGTTTGGTCGTTCGTTACTGTTT 59.316 39.130 0.00 0.00 0.00 2.83
39 40 4.153835 TGTTTGGTCGTTCGTTACTGTTTT 59.846 37.500 0.00 0.00 0.00 2.43
40 41 4.943142 TTGGTCGTTCGTTACTGTTTTT 57.057 36.364 0.00 0.00 0.00 1.94
41 42 4.519191 TGGTCGTTCGTTACTGTTTTTC 57.481 40.909 0.00 0.00 0.00 2.29
42 43 3.931468 TGGTCGTTCGTTACTGTTTTTCA 59.069 39.130 0.00 0.00 0.00 2.69
43 44 4.391216 TGGTCGTTCGTTACTGTTTTTCAA 59.609 37.500 0.00 0.00 0.00 2.69
44 45 4.725280 GGTCGTTCGTTACTGTTTTTCAAC 59.275 41.667 0.00 0.00 0.00 3.18
45 46 5.446340 GGTCGTTCGTTACTGTTTTTCAACT 60.446 40.000 0.00 0.00 33.58 3.16
46 47 6.237808 GGTCGTTCGTTACTGTTTTTCAACTA 60.238 38.462 0.00 0.00 33.58 2.24
47 48 7.339953 GTCGTTCGTTACTGTTTTTCAACTAT 58.660 34.615 0.00 0.00 33.58 2.12
48 49 8.479280 GTCGTTCGTTACTGTTTTTCAACTATA 58.521 33.333 0.00 0.00 33.58 1.31
49 50 8.479280 TCGTTCGTTACTGTTTTTCAACTATAC 58.521 33.333 0.00 0.00 33.58 1.47
50 51 7.469145 CGTTCGTTACTGTTTTTCAACTATACG 59.531 37.037 0.00 0.00 33.58 3.06
51 52 6.810286 TCGTTACTGTTTTTCAACTATACGC 58.190 36.000 0.00 0.00 33.58 4.42
52 53 5.720339 CGTTACTGTTTTTCAACTATACGCG 59.280 40.000 3.53 3.53 33.58 6.01
53 54 6.584056 GTTACTGTTTTTCAACTATACGCGT 58.416 36.000 19.17 19.17 33.58 6.01
54 55 7.409238 CGTTACTGTTTTTCAACTATACGCGTA 60.409 37.037 22.94 22.94 33.58 4.42
55 56 6.956299 ACTGTTTTTCAACTATACGCGTAT 57.044 33.333 32.13 32.13 33.58 3.06
56 57 9.566530 TTACTGTTTTTCAACTATACGCGTATA 57.433 29.630 31.05 31.05 33.58 1.47
57 58 8.638685 ACTGTTTTTCAACTATACGCGTATAT 57.361 30.769 32.65 20.07 33.58 0.86
58 59 8.749499 ACTGTTTTTCAACTATACGCGTATATC 58.251 33.333 32.65 14.90 33.58 1.63
59 60 8.064447 TGTTTTTCAACTATACGCGTATATCC 57.936 34.615 32.65 15.89 33.58 2.59
60 61 7.705752 TGTTTTTCAACTATACGCGTATATCCA 59.294 33.333 32.65 17.37 33.58 3.41
61 62 7.862741 TTTTCAACTATACGCGTATATCCAG 57.137 36.000 32.65 26.06 0.00 3.86
62 63 4.978186 TCAACTATACGCGTATATCCAGC 58.022 43.478 32.65 0.00 0.00 4.85
63 64 4.698780 TCAACTATACGCGTATATCCAGCT 59.301 41.667 32.65 16.06 0.00 4.24
64 65 4.617808 ACTATACGCGTATATCCAGCTG 57.382 45.455 32.65 22.83 0.00 4.24
65 66 4.008330 ACTATACGCGTATATCCAGCTGT 58.992 43.478 32.65 23.38 0.00 4.40
66 67 5.181009 ACTATACGCGTATATCCAGCTGTA 58.819 41.667 32.65 13.73 0.00 2.74
67 68 5.821470 ACTATACGCGTATATCCAGCTGTAT 59.179 40.000 32.65 12.65 35.99 2.29
68 69 6.988580 ACTATACGCGTATATCCAGCTGTATA 59.011 38.462 32.65 13.08 34.82 1.47
69 70 6.879276 ATACGCGTATATCCAGCTGTATAT 57.121 37.500 29.34 15.26 32.98 0.86
70 71 5.578005 ACGCGTATATCCAGCTGTATATT 57.422 39.130 16.02 2.65 0.00 1.28
71 72 6.688637 ACGCGTATATCCAGCTGTATATTA 57.311 37.500 16.02 1.81 0.00 0.98
72 73 7.273320 ACGCGTATATCCAGCTGTATATTAT 57.727 36.000 16.02 6.71 0.00 1.28
73 74 7.713750 ACGCGTATATCCAGCTGTATATTATT 58.286 34.615 16.02 0.00 0.00 1.40
74 75 8.843262 ACGCGTATATCCAGCTGTATATTATTA 58.157 33.333 16.02 0.00 0.00 0.98
75 76 9.331106 CGCGTATATCCAGCTGTATATTATTAG 57.669 37.037 16.02 6.12 0.00 1.73
104 105 9.970395 TTAGTATTATTTCCGATGTTGATACGT 57.030 29.630 0.00 0.00 0.00 3.57
108 109 5.591643 ATTTCCGATGTTGATACGTATGC 57.408 39.130 13.97 5.50 0.00 3.14
109 110 3.719173 TCCGATGTTGATACGTATGCA 57.281 42.857 13.97 9.41 0.00 3.96
110 111 4.251543 TCCGATGTTGATACGTATGCAT 57.748 40.909 13.97 13.61 0.00 3.96
111 112 3.987220 TCCGATGTTGATACGTATGCATG 59.013 43.478 13.97 8.92 0.00 4.06
112 113 3.123453 CCGATGTTGATACGTATGCATGG 59.877 47.826 13.97 14.01 0.00 3.66
113 114 3.987220 CGATGTTGATACGTATGCATGGA 59.013 43.478 13.97 0.00 0.00 3.41
114 115 4.447389 CGATGTTGATACGTATGCATGGAA 59.553 41.667 13.97 0.00 0.00 3.53
176 184 5.412904 ACCTCTACGCTTTAACTTACGTACT 59.587 40.000 0.00 0.00 39.78 2.73
177 185 6.594159 ACCTCTACGCTTTAACTTACGTACTA 59.406 38.462 0.00 0.00 39.78 1.82
178 186 7.122550 CCTCTACGCTTTAACTTACGTACTAG 58.877 42.308 0.00 0.00 39.78 2.57
179 187 7.201565 CCTCTACGCTTTAACTTACGTACTAGT 60.202 40.741 0.00 0.00 39.78 2.57
180 188 8.697846 TCTACGCTTTAACTTACGTACTAGTA 57.302 34.615 0.00 0.00 39.78 1.82
181 189 8.592998 TCTACGCTTTAACTTACGTACTAGTAC 58.407 37.037 21.06 21.06 39.78 2.73
182 190 7.365840 ACGCTTTAACTTACGTACTAGTACT 57.634 36.000 26.36 17.18 36.91 2.73
183 191 8.475331 ACGCTTTAACTTACGTACTAGTACTA 57.525 34.615 26.36 16.34 36.91 1.82
184 192 8.381387 ACGCTTTAACTTACGTACTAGTACTAC 58.619 37.037 26.36 7.74 36.91 2.73
185 193 7.575894 CGCTTTAACTTACGTACTAGTACTACG 59.424 40.741 26.36 20.19 42.22 3.51
347 632 1.065418 CCGAATTGCCCTCCACTAACT 60.065 52.381 0.00 0.00 0.00 2.24
348 633 2.009774 CGAATTGCCCTCCACTAACTG 58.990 52.381 0.00 0.00 0.00 3.16
351 636 2.820037 GCCCTCCACTAACTGCGC 60.820 66.667 0.00 0.00 0.00 6.09
426 732 7.409874 GCGCGTAATTTGTTTTGATTTGACATA 60.410 33.333 8.43 0.00 0.00 2.29
427 733 7.885714 CGCGTAATTTGTTTTGATTTGACATAC 59.114 33.333 0.00 0.00 0.00 2.39
428 734 8.695284 GCGTAATTTGTTTTGATTTGACATACA 58.305 29.630 0.00 0.00 0.00 2.29
429 735 9.987901 CGTAATTTGTTTTGATTTGACATACAC 57.012 29.630 0.00 0.00 0.00 2.90
474 795 0.035317 TGCGTGCAGAGATCAAAGGT 59.965 50.000 0.00 0.00 0.00 3.50
541 881 5.801531 AACGATACAGTATATGGCCAAGA 57.198 39.130 10.96 0.00 0.00 3.02
613 958 0.109597 CCAGCAATTTCGGTGCAGAC 60.110 55.000 0.00 0.00 44.74 3.51
621 966 2.093306 TTCGGTGCAGACAGGTAATG 57.907 50.000 0.00 0.00 0.00 1.90
633 978 0.526954 AGGTAATGTAACGCGGCGAG 60.527 55.000 30.94 11.17 0.00 5.03
706 1052 6.874278 AAATAAAAGGAAAATCCCTCCTGG 57.126 37.500 0.00 0.00 42.77 4.45
723 1069 5.437191 TCCTGGAAAGGAGAAGGATTAAC 57.563 43.478 0.00 0.00 33.85 2.01
724 1070 5.101529 TCCTGGAAAGGAGAAGGATTAACT 58.898 41.667 0.00 0.00 33.85 2.24
725 1071 6.269194 TCCTGGAAAGGAGAAGGATTAACTA 58.731 40.000 0.00 0.00 33.85 2.24
726 1072 6.909158 TCCTGGAAAGGAGAAGGATTAACTAT 59.091 38.462 0.00 0.00 33.85 2.12
727 1073 7.071321 TCCTGGAAAGGAGAAGGATTAACTATC 59.929 40.741 0.00 0.00 33.85 2.08
728 1074 6.817184 TGGAAAGGAGAAGGATTAACTATCG 58.183 40.000 0.00 0.00 33.82 2.92
745 1139 2.107141 GAGGGCCGGTCAATCTCG 59.893 66.667 9.07 0.00 0.00 4.04
792 1400 2.111251 GCCAAGGATAGGGGACGC 59.889 66.667 0.00 0.00 0.00 5.19
920 1565 1.078143 GCACCTCCCACCACATCTC 60.078 63.158 0.00 0.00 0.00 2.75
1079 1746 2.285368 CCACCACCAGCTCCCCTA 60.285 66.667 0.00 0.00 0.00 3.53
1405 2087 3.374058 CCTGCTAAAACATGTAAGTCCCG 59.626 47.826 0.00 0.00 0.00 5.14
1417 2104 2.762535 AAGTCCCGTGATCAAATCGT 57.237 45.000 0.00 0.00 0.00 3.73
1419 2106 1.548719 AGTCCCGTGATCAAATCGTCA 59.451 47.619 0.00 0.00 0.00 4.35
1425 2112 2.607187 GTGATCAAATCGTCACCGTCT 58.393 47.619 0.00 0.00 38.98 4.18
1438 2125 0.248661 ACCGTCTCGATCGATGCTTG 60.249 55.000 19.78 6.62 0.00 4.01
1452 2155 1.081175 GCTTGGCGTTTCAGGCTTC 60.081 57.895 0.00 0.00 36.89 3.86
1478 2182 5.851047 TTCTACTAGCTTTTGTTAACCGC 57.149 39.130 2.48 0.92 0.00 5.68
1533 2237 1.771783 TTGGCAGAGCAGAGGCAGAA 61.772 55.000 0.00 0.00 44.61 3.02
1616 2320 0.386605 CGAGGAGATTGAGCGGATCG 60.387 60.000 0.00 0.00 0.00 3.69
1657 2361 2.815647 GAGCGCCTTCGGAACCTG 60.816 66.667 2.29 0.00 35.95 4.00
2187 3196 5.222007 GGAGGATGGTTGGATGACATAGATT 60.222 44.000 0.00 0.00 0.00 2.40
2188 3197 5.628130 AGGATGGTTGGATGACATAGATTG 58.372 41.667 0.00 0.00 0.00 2.67
2189 3198 5.370584 AGGATGGTTGGATGACATAGATTGA 59.629 40.000 0.00 0.00 0.00 2.57
2190 3199 6.045224 AGGATGGTTGGATGACATAGATTGAT 59.955 38.462 0.00 0.00 0.00 2.57
2191 3200 7.238305 AGGATGGTTGGATGACATAGATTGATA 59.762 37.037 0.00 0.00 0.00 2.15
2192 3201 7.551974 GGATGGTTGGATGACATAGATTGATAG 59.448 40.741 0.00 0.00 0.00 2.08
2193 3202 7.616528 TGGTTGGATGACATAGATTGATAGA 57.383 36.000 0.00 0.00 0.00 1.98
2194 3203 8.211030 TGGTTGGATGACATAGATTGATAGAT 57.789 34.615 0.00 0.00 0.00 1.98
2260 3271 3.374220 TTTTGCTGAAGCTGTTGGATG 57.626 42.857 3.61 0.00 42.66 3.51
2304 3316 8.542497 AAAACAGTTCGTAGTATTGCAGATTA 57.458 30.769 0.00 0.00 0.00 1.75
2306 3318 8.718102 AACAGTTCGTAGTATTGCAGATTATT 57.282 30.769 0.00 0.00 0.00 1.40
2307 3319 9.811995 AACAGTTCGTAGTATTGCAGATTATTA 57.188 29.630 0.00 0.00 0.00 0.98
2308 3320 9.982651 ACAGTTCGTAGTATTGCAGATTATTAT 57.017 29.630 0.00 0.00 0.00 1.28
2313 3325 9.983804 TCGTAGTATTGCAGATTATTATAGACG 57.016 33.333 0.00 0.00 0.00 4.18
2314 3326 9.983804 CGTAGTATTGCAGATTATTATAGACGA 57.016 33.333 0.00 0.00 0.00 4.20
2361 3373 1.299926 CGGAGCCGGTATGTACTGC 60.300 63.158 1.90 0.00 35.56 4.40
2362 3374 1.820581 GGAGCCGGTATGTACTGCA 59.179 57.895 1.90 0.00 0.00 4.41
2363 3375 0.177141 GGAGCCGGTATGTACTGCAA 59.823 55.000 1.90 0.00 0.00 4.08
2364 3376 1.571919 GAGCCGGTATGTACTGCAAG 58.428 55.000 1.90 0.00 42.29 4.01
2365 3377 0.462047 AGCCGGTATGTACTGCAAGC 60.462 55.000 1.90 0.00 37.60 4.01
2366 3378 1.436983 GCCGGTATGTACTGCAAGCC 61.437 60.000 1.90 0.00 37.60 4.35
2383 3410 0.109597 GCCACTTGAAGATTGGTGCG 60.110 55.000 0.00 0.00 30.97 5.34
2384 3411 1.238439 CCACTTGAAGATTGGTGCGT 58.762 50.000 0.00 0.00 0.00 5.24
2385 3412 1.069022 CCACTTGAAGATTGGTGCGTG 60.069 52.381 0.00 0.00 0.00 5.34
2393 3420 1.208052 AGATTGGTGCGTGCTGTCTAT 59.792 47.619 0.00 0.00 0.00 1.98
2402 3429 2.342651 GCGTGCTGTCTATATGCATACG 59.657 50.000 8.99 8.50 39.00 3.06
2445 3475 8.171164 TGTTGAACAACACCATATGAAATGTA 57.829 30.769 15.04 0.00 45.42 2.29
2458 3488 9.941664 CCATATGAAATGTATTGTCAACTCTTC 57.058 33.333 3.65 0.00 0.00 2.87
2463 3493 8.150296 TGAAATGTATTGTCAACTCTTCTCAGA 58.850 33.333 0.00 0.00 0.00 3.27
2531 3587 4.620723 TCCTCTAGCTCCCATAACAAAGA 58.379 43.478 0.00 0.00 0.00 2.52
2644 3708 8.265055 CAGGTGTTAAGACCTTTAGGATCAATA 58.735 37.037 21.21 0.00 44.53 1.90
2885 6463 8.128582 TGAAATACATGTTTGAAATCTATCCGC 58.871 33.333 2.30 0.00 0.00 5.54
2908 6486 7.011773 CGCGAAATATATTCAGAAATGAGTGG 58.988 38.462 0.00 0.00 0.00 4.00
2910 6488 8.725148 GCGAAATATATTCAGAAATGAGTGGAT 58.275 33.333 0.00 0.00 0.00 3.41
2919 6498 9.918630 ATTCAGAAATGAGTGGATTTAGTTTTG 57.081 29.630 0.00 0.00 0.00 2.44
2921 6500 9.567776 TCAGAAATGAGTGGATTTAGTTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2959 6538 8.635877 TGTTTTTATAAATGCGTGAAAAGTGT 57.364 26.923 0.00 0.00 0.00 3.55
3031 6616 6.930731 TGTAAATGAGTTTAATGCCTTTCCC 58.069 36.000 0.00 0.00 31.94 3.97
3043 6628 1.821136 GCCTTTCCCAAATGGAGTGAG 59.179 52.381 0.00 0.00 46.24 3.51
3044 6629 2.555227 GCCTTTCCCAAATGGAGTGAGA 60.555 50.000 0.00 0.00 46.24 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.911514 ACGACCAAACAAATAAGCTTGT 57.088 36.364 9.86 0.00 41.31 3.16
6 7 4.378616 CGAACGACCAAACAAATAAGCTTG 59.621 41.667 9.86 0.00 0.00 4.01
7 8 4.035909 ACGAACGACCAAACAAATAAGCTT 59.964 37.500 3.48 3.48 0.00 3.74
8 9 3.562557 ACGAACGACCAAACAAATAAGCT 59.437 39.130 0.14 0.00 0.00 3.74
9 10 3.880610 ACGAACGACCAAACAAATAAGC 58.119 40.909 0.14 0.00 0.00 3.09
10 11 6.572254 CAGTAACGAACGACCAAACAAATAAG 59.428 38.462 0.14 0.00 0.00 1.73
11 12 6.036953 ACAGTAACGAACGACCAAACAAATAA 59.963 34.615 0.14 0.00 0.00 1.40
12 13 5.523188 ACAGTAACGAACGACCAAACAAATA 59.477 36.000 0.14 0.00 0.00 1.40
13 14 4.333372 ACAGTAACGAACGACCAAACAAAT 59.667 37.500 0.14 0.00 0.00 2.32
14 15 3.683822 ACAGTAACGAACGACCAAACAAA 59.316 39.130 0.14 0.00 0.00 2.83
15 16 3.260740 ACAGTAACGAACGACCAAACAA 58.739 40.909 0.14 0.00 0.00 2.83
16 17 2.891112 ACAGTAACGAACGACCAAACA 58.109 42.857 0.14 0.00 0.00 2.83
17 18 3.931285 AACAGTAACGAACGACCAAAC 57.069 42.857 0.14 0.00 0.00 2.93
18 19 4.943142 AAAACAGTAACGAACGACCAAA 57.057 36.364 0.14 0.00 0.00 3.28
19 20 4.391216 TGAAAAACAGTAACGAACGACCAA 59.609 37.500 0.14 0.00 0.00 3.67
20 21 3.931468 TGAAAAACAGTAACGAACGACCA 59.069 39.130 0.14 0.00 0.00 4.02
21 22 4.519191 TGAAAAACAGTAACGAACGACC 57.481 40.909 0.14 0.00 0.00 4.79
22 23 5.553721 AGTTGAAAAACAGTAACGAACGAC 58.446 37.500 0.14 0.00 0.00 4.34
23 24 5.783100 AGTTGAAAAACAGTAACGAACGA 57.217 34.783 0.14 0.00 0.00 3.85
24 25 7.469145 CGTATAGTTGAAAAACAGTAACGAACG 59.531 37.037 0.00 0.00 0.00 3.95
25 26 7.264868 GCGTATAGTTGAAAAACAGTAACGAAC 59.735 37.037 0.00 0.00 0.00 3.95
26 27 7.282916 GCGTATAGTTGAAAAACAGTAACGAA 58.717 34.615 0.00 0.00 0.00 3.85
27 28 6.398830 CGCGTATAGTTGAAAAACAGTAACGA 60.399 38.462 0.00 0.00 0.00 3.85
28 29 5.720339 CGCGTATAGTTGAAAAACAGTAACG 59.280 40.000 0.00 0.00 0.00 3.18
29 30 6.584056 ACGCGTATAGTTGAAAAACAGTAAC 58.416 36.000 11.67 0.00 0.00 2.50
30 31 6.768029 ACGCGTATAGTTGAAAAACAGTAA 57.232 33.333 11.67 0.00 0.00 2.24
31 32 9.734620 ATATACGCGTATAGTTGAAAAACAGTA 57.265 29.630 34.46 15.28 32.18 2.74
32 33 6.956299 ATACGCGTATAGTTGAAAAACAGT 57.044 33.333 29.34 0.69 0.00 3.55
33 34 8.212495 GGATATACGCGTATAGTTGAAAAACAG 58.788 37.037 34.46 0.00 32.18 3.16
34 35 7.705752 TGGATATACGCGTATAGTTGAAAAACA 59.294 33.333 34.46 21.41 32.18 2.83
35 36 8.064447 TGGATATACGCGTATAGTTGAAAAAC 57.936 34.615 34.46 19.73 32.18 2.43
36 37 7.095940 GCTGGATATACGCGTATAGTTGAAAAA 60.096 37.037 34.46 17.52 32.18 1.94
37 38 6.364165 GCTGGATATACGCGTATAGTTGAAAA 59.636 38.462 34.46 18.16 32.18 2.29
38 39 5.860182 GCTGGATATACGCGTATAGTTGAAA 59.140 40.000 34.46 18.81 32.18 2.69
39 40 5.182570 AGCTGGATATACGCGTATAGTTGAA 59.817 40.000 34.46 19.46 32.18 2.69
40 41 4.698780 AGCTGGATATACGCGTATAGTTGA 59.301 41.667 34.46 20.11 32.18 3.18
41 42 4.793731 CAGCTGGATATACGCGTATAGTTG 59.206 45.833 34.46 27.52 32.18 3.16
42 43 4.458295 ACAGCTGGATATACGCGTATAGTT 59.542 41.667 34.46 23.72 32.18 2.24
43 44 4.008330 ACAGCTGGATATACGCGTATAGT 58.992 43.478 34.46 24.67 32.18 2.12
44 45 4.617808 ACAGCTGGATATACGCGTATAG 57.382 45.455 34.46 26.42 32.18 1.31
45 46 7.974482 ATATACAGCTGGATATACGCGTATA 57.026 36.000 33.99 33.99 34.08 1.47
46 47 6.879276 ATATACAGCTGGATATACGCGTAT 57.121 37.500 32.13 32.13 32.54 3.06
47 48 6.688637 AATATACAGCTGGATATACGCGTA 57.311 37.500 28.09 22.94 0.00 4.42
48 49 5.578005 AATATACAGCTGGATATACGCGT 57.422 39.130 28.09 19.17 0.00 6.01
49 50 9.331106 CTAATAATATACAGCTGGATATACGCG 57.669 37.037 28.09 13.95 0.00 6.01
78 79 9.970395 ACGTATCAACATCGGAAATAATACTAA 57.030 29.630 0.00 0.00 0.00 2.24
82 83 8.865978 GCATACGTATCAACATCGGAAATAATA 58.134 33.333 4.74 0.00 0.00 0.98
83 84 7.386573 TGCATACGTATCAACATCGGAAATAAT 59.613 33.333 4.74 0.00 0.00 1.28
84 85 6.702282 TGCATACGTATCAACATCGGAAATAA 59.298 34.615 4.74 0.00 0.00 1.40
85 86 6.217294 TGCATACGTATCAACATCGGAAATA 58.783 36.000 4.74 0.00 0.00 1.40
86 87 5.053811 TGCATACGTATCAACATCGGAAAT 58.946 37.500 4.74 0.00 0.00 2.17
87 88 4.434520 TGCATACGTATCAACATCGGAAA 58.565 39.130 4.74 0.00 0.00 3.13
88 89 4.048241 TGCATACGTATCAACATCGGAA 57.952 40.909 4.74 0.00 0.00 4.30
89 90 3.719173 TGCATACGTATCAACATCGGA 57.281 42.857 4.74 0.00 0.00 4.55
90 91 3.123453 CCATGCATACGTATCAACATCGG 59.877 47.826 4.74 9.82 0.00 4.18
91 92 3.987220 TCCATGCATACGTATCAACATCG 59.013 43.478 4.74 3.46 0.00 3.84
92 93 5.466728 AGTTCCATGCATACGTATCAACATC 59.533 40.000 4.74 0.00 0.00 3.06
93 94 5.368145 AGTTCCATGCATACGTATCAACAT 58.632 37.500 4.74 7.21 0.00 2.71
94 95 4.765273 AGTTCCATGCATACGTATCAACA 58.235 39.130 4.74 5.05 0.00 3.33
95 96 4.808895 TGAGTTCCATGCATACGTATCAAC 59.191 41.667 4.74 0.00 0.00 3.18
96 97 5.017294 TGAGTTCCATGCATACGTATCAA 57.983 39.130 4.74 0.00 0.00 2.57
97 98 4.664150 TGAGTTCCATGCATACGTATCA 57.336 40.909 4.74 7.55 0.00 2.15
98 99 5.696270 TGAATGAGTTCCATGCATACGTATC 59.304 40.000 4.74 1.78 35.89 2.24
99 100 5.610398 TGAATGAGTTCCATGCATACGTAT 58.390 37.500 1.14 1.14 35.89 3.06
100 101 5.017294 TGAATGAGTTCCATGCATACGTA 57.983 39.130 0.00 0.00 35.89 3.57
101 102 3.872696 TGAATGAGTTCCATGCATACGT 58.127 40.909 0.00 0.00 35.89 3.57
106 107 3.025978 GGGAATGAATGAGTTCCATGCA 58.974 45.455 6.49 0.00 44.63 3.96
107 108 3.294214 AGGGAATGAATGAGTTCCATGC 58.706 45.455 6.49 0.00 44.53 4.06
108 109 5.198965 AGAAGGGAATGAATGAGTTCCATG 58.801 41.667 6.49 0.00 44.53 3.66
109 110 5.463051 AGAAGGGAATGAATGAGTTCCAT 57.537 39.130 6.49 0.00 44.53 3.41
110 111 4.934797 AGAAGGGAATGAATGAGTTCCA 57.065 40.909 6.49 0.00 44.53 3.53
111 112 7.888250 AATTAGAAGGGAATGAATGAGTTCC 57.112 36.000 0.00 0.00 42.51 3.62
112 113 9.578439 CAAAATTAGAAGGGAATGAATGAGTTC 57.422 33.333 0.00 0.00 34.85 3.01
113 114 9.312904 TCAAAATTAGAAGGGAATGAATGAGTT 57.687 29.630 0.00 0.00 0.00 3.01
114 115 8.884124 TCAAAATTAGAAGGGAATGAATGAGT 57.116 30.769 0.00 0.00 0.00 3.41
179 187 8.530311 TGGTTGAGGAAAATAATGTACGTAGTA 58.470 33.333 0.00 0.00 45.11 1.82
181 189 7.837202 TGGTTGAGGAAAATAATGTACGTAG 57.163 36.000 0.00 0.00 0.00 3.51
182 190 8.262227 AGATGGTTGAGGAAAATAATGTACGTA 58.738 33.333 0.00 0.00 0.00 3.57
183 191 7.110155 AGATGGTTGAGGAAAATAATGTACGT 58.890 34.615 0.00 0.00 0.00 3.57
184 192 7.553881 AGATGGTTGAGGAAAATAATGTACG 57.446 36.000 0.00 0.00 0.00 3.67
185 193 9.391006 TGTAGATGGTTGAGGAAAATAATGTAC 57.609 33.333 0.00 0.00 0.00 2.90
186 194 9.613428 CTGTAGATGGTTGAGGAAAATAATGTA 57.387 33.333 0.00 0.00 0.00 2.29
187 195 7.067494 GCTGTAGATGGTTGAGGAAAATAATGT 59.933 37.037 0.00 0.00 0.00 2.71
188 196 7.284034 AGCTGTAGATGGTTGAGGAAAATAATG 59.716 37.037 0.00 0.00 0.00 1.90
233 251 8.656849 CGTACTTTAATGTGCTGAGATTTACTT 58.343 33.333 4.33 0.00 0.00 2.24
235 257 7.960793 ACGTACTTTAATGTGCTGAGATTTAC 58.039 34.615 4.33 0.00 0.00 2.01
238 260 6.252869 CGTACGTACTTTAATGTGCTGAGATT 59.747 38.462 22.55 0.00 0.00 2.40
347 632 0.793861 GAATCACGTACAAAGGCGCA 59.206 50.000 10.83 0.00 0.00 6.09
348 633 0.096454 GGAATCACGTACAAAGGCGC 59.904 55.000 0.00 0.00 0.00 6.53
351 636 2.373540 TCGGGAATCACGTACAAAGG 57.626 50.000 4.33 0.00 0.00 3.11
474 795 1.218875 AATCAGCACGCGTCGTTGAA 61.219 50.000 23.40 12.69 38.32 2.69
541 881 4.469657 TGACTAATTTGCAGAACCCAAGT 58.530 39.130 0.00 0.00 0.00 3.16
613 958 0.802994 TCGCCGCGTTACATTACCTG 60.803 55.000 13.39 0.00 0.00 4.00
621 966 2.802414 ACGAACTCGCCGCGTTAC 60.802 61.111 13.39 2.68 44.43 2.50
633 978 5.684550 AATTTGGAGTAGAAACCACGAAC 57.315 39.130 0.00 0.00 35.81 3.95
666 1011 7.600752 CCTTTTATTTATGGCTTCCGTTTCAAA 59.399 33.333 0.00 0.00 0.00 2.69
706 1052 7.149307 CCTCGATAGTTAATCCTTCTCCTTTC 58.851 42.308 0.00 0.00 37.40 2.62
709 1055 5.081032 CCCTCGATAGTTAATCCTTCTCCT 58.919 45.833 0.00 0.00 37.40 3.69
710 1056 4.322123 GCCCTCGATAGTTAATCCTTCTCC 60.322 50.000 0.00 0.00 37.40 3.71
711 1057 4.322123 GGCCCTCGATAGTTAATCCTTCTC 60.322 50.000 0.00 0.00 37.40 2.87
712 1058 3.579151 GGCCCTCGATAGTTAATCCTTCT 59.421 47.826 0.00 0.00 37.40 2.85
713 1059 3.614390 CGGCCCTCGATAGTTAATCCTTC 60.614 52.174 0.00 0.00 42.43 3.46
714 1060 2.299297 CGGCCCTCGATAGTTAATCCTT 59.701 50.000 0.00 0.00 42.43 3.36
715 1061 1.893801 CGGCCCTCGATAGTTAATCCT 59.106 52.381 0.00 0.00 42.43 3.24
716 1062 1.067071 CCGGCCCTCGATAGTTAATCC 60.067 57.143 0.00 0.00 42.43 3.01
717 1063 1.617357 ACCGGCCCTCGATAGTTAATC 59.383 52.381 0.00 0.00 42.43 1.75
718 1064 1.617357 GACCGGCCCTCGATAGTTAAT 59.383 52.381 0.00 0.00 42.43 1.40
719 1065 1.035139 GACCGGCCCTCGATAGTTAA 58.965 55.000 0.00 0.00 42.43 2.01
720 1066 0.106569 TGACCGGCCCTCGATAGTTA 60.107 55.000 0.00 0.00 42.43 2.24
721 1067 0.974010 TTGACCGGCCCTCGATAGTT 60.974 55.000 0.00 0.00 42.43 2.24
722 1068 0.759436 ATTGACCGGCCCTCGATAGT 60.759 55.000 0.00 0.00 42.43 2.12
723 1069 0.038159 GATTGACCGGCCCTCGATAG 60.038 60.000 0.00 0.00 42.43 2.08
724 1070 0.469331 AGATTGACCGGCCCTCGATA 60.469 55.000 0.00 0.00 42.43 2.92
725 1071 1.749334 GAGATTGACCGGCCCTCGAT 61.749 60.000 0.00 0.00 42.43 3.59
726 1072 2.363795 AGATTGACCGGCCCTCGA 60.364 61.111 0.00 0.00 42.43 4.04
727 1073 2.107141 GAGATTGACCGGCCCTCG 59.893 66.667 0.00 0.00 38.88 4.63
728 1074 2.107141 CGAGATTGACCGGCCCTC 59.893 66.667 0.00 0.00 0.00 4.30
745 1139 2.473235 GAGTGAGAAAGCAACTGACGAC 59.527 50.000 0.00 0.00 0.00 4.34
779 1173 2.521224 GTCCGCGTCCCCTATCCT 60.521 66.667 4.92 0.00 0.00 3.24
792 1400 2.333581 GGTTTTGGTTGGCGTCCG 59.666 61.111 0.00 0.00 0.00 4.79
920 1565 1.987855 TCCCTGGCCGGAGTTAGTG 60.988 63.158 15.09 0.00 33.16 2.74
1149 1816 1.226323 CGTGAAGAGGTCCGCGTAG 60.226 63.158 4.92 0.00 0.00 3.51
1259 1941 3.307906 CCTGAACACCGTCGGGGA 61.308 66.667 23.23 0.00 40.00 4.81
1417 2104 1.095807 AGCATCGATCGAGACGGTGA 61.096 55.000 23.84 0.00 43.33 4.02
1419 2106 0.248661 CAAGCATCGATCGAGACGGT 60.249 55.000 23.84 16.08 0.00 4.83
1425 2112 0.739462 AAACGCCAAGCATCGATCGA 60.739 50.000 21.86 21.86 0.00 3.59
1438 2125 2.029918 AGAAATTGAAGCCTGAAACGCC 60.030 45.455 0.00 0.00 0.00 5.68
1452 2155 7.270579 GCGGTTAACAAAAGCTAGTAGAAATTG 59.729 37.037 8.10 4.75 0.00 2.32
1478 2182 0.807275 TTCGCCTGCATCATCGACAG 60.807 55.000 0.00 0.00 0.00 3.51
1519 2223 1.123861 TGTGGTTCTGCCTCTGCTCT 61.124 55.000 0.00 0.00 38.71 4.09
1533 2237 2.573869 CGATGAGCCTCGTGTGGT 59.426 61.111 0.00 0.00 34.00 4.16
1616 2320 2.189499 GCGCCCAGTTCATGATCCC 61.189 63.158 0.00 0.00 0.00 3.85
1657 2361 0.257039 ACATCTGGGCCTCCATGAAC 59.743 55.000 4.53 0.00 43.11 3.18
2134 2882 0.383949 CCCCCGTCAACAACAACAAG 59.616 55.000 0.00 0.00 0.00 3.16
2187 3196 9.261035 GGGAAACTCATCCTCTAATATCTATCA 57.739 37.037 0.00 0.00 39.57 2.15
2188 3197 9.487442 AGGGAAACTCATCCTCTAATATCTATC 57.513 37.037 0.00 0.00 39.57 2.08
2189 3198 9.851267 AAGGGAAACTCATCCTCTAATATCTAT 57.149 33.333 0.00 0.00 39.57 1.98
2190 3199 9.676129 AAAGGGAAACTCATCCTCTAATATCTA 57.324 33.333 0.00 0.00 39.57 1.98
2191 3200 8.574309 AAAGGGAAACTCATCCTCTAATATCT 57.426 34.615 0.00 0.00 39.57 1.98
2192 3201 9.634021 AAAAAGGGAAACTCATCCTCTAATATC 57.366 33.333 0.00 0.00 39.57 1.63
2260 3271 8.925700 ACTGTTTTTCTTCTTGTTGAACAATTC 58.074 29.630 11.58 0.00 37.48 2.17
2304 3316 1.767289 CCGCGCACTTCGTCTATAAT 58.233 50.000 8.75 0.00 41.07 1.28
2306 3318 1.298863 GCCGCGCACTTCGTCTATA 60.299 57.895 8.75 0.00 41.07 1.31
2307 3319 2.582498 GCCGCGCACTTCGTCTAT 60.582 61.111 8.75 0.00 41.07 1.98
2308 3320 4.789075 GGCCGCGCACTTCGTCTA 62.789 66.667 8.75 0.00 41.07 2.59
2326 3338 0.671251 CCGGTAAAAAGTGGCTTGCA 59.329 50.000 0.00 0.00 0.00 4.08
2331 3343 1.880894 GGCTCCGGTAAAAAGTGGC 59.119 57.895 0.00 0.00 0.00 5.01
2359 3371 1.614903 CCAATCTTCAAGTGGCTTGCA 59.385 47.619 4.16 0.00 40.84 4.08
2366 3378 1.664016 GCACGCACCAATCTTCAAGTG 60.664 52.381 0.00 0.00 0.00 3.16
2383 3410 4.799678 ACTCGTATGCATATAGACAGCAC 58.200 43.478 20.09 3.78 41.60 4.40
2384 3411 6.759497 ATACTCGTATGCATATAGACAGCA 57.241 37.500 20.09 0.00 43.14 4.41
2385 3412 6.693545 GGAATACTCGTATGCATATAGACAGC 59.306 42.308 20.09 2.91 0.00 4.40
2393 3420 9.850628 GTATACAAAGGAATACTCGTATGCATA 57.149 33.333 1.16 1.16 0.00 3.14
2402 3429 9.431887 TGTTCAACAGTATACAAAGGAATACTC 57.568 33.333 5.50 0.00 36.91 2.59
2445 3475 7.872113 AAAAGTTCTGAGAAGAGTTGACAAT 57.128 32.000 0.00 0.00 0.00 2.71
2458 3488 6.771188 ATCGTACTGACAAAAAGTTCTGAG 57.229 37.500 0.00 0.00 0.00 3.35
2463 3493 5.493133 TGCAATCGTACTGACAAAAAGTT 57.507 34.783 0.00 0.00 0.00 2.66
2745 3811 5.591643 TTTCACTCGCTTCACAAATACTC 57.408 39.130 0.00 0.00 0.00 2.59
2746 3812 7.849804 ATATTTCACTCGCTTCACAAATACT 57.150 32.000 0.00 0.00 0.00 2.12
2747 3813 9.798885 GATATATTTCACTCGCTTCACAAATAC 57.201 33.333 0.00 0.00 0.00 1.89
2748 3814 9.764363 AGATATATTTCACTCGCTTCACAAATA 57.236 29.630 0.00 0.00 0.00 1.40
2749 3815 8.668510 AGATATATTTCACTCGCTTCACAAAT 57.331 30.769 0.00 0.00 0.00 2.32
2879 6457 8.996024 TCATTTCTGAATATATTTCGCGGATA 57.004 30.769 6.13 5.89 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.