Multiple sequence alignment - TraesCS7B01G339900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G339900 chr7B 100.000 6027 0 0 1 6027 594214186 594220212 0.000000e+00 11130.0
1 TraesCS7B01G339900 chr7B 79.391 3251 581 62 1605 4803 111322572 111319359 0.000000e+00 2209.0
2 TraesCS7B01G339900 chr7B 79.076 3269 571 77 1612 4807 59641139 59637911 0.000000e+00 2143.0
3 TraesCS7B01G339900 chr7B 79.888 179 25 6 155 330 594178476 594178646 2.950000e-23 121.0
4 TraesCS7B01G339900 chr7B 91.765 85 6 1 5943 6027 594410987 594411070 3.820000e-22 117.0
5 TraesCS7B01G339900 chr7D 94.639 2574 108 16 523 3081 550072021 550074579 0.000000e+00 3962.0
6 TraesCS7B01G339900 chr7D 81.434 3054 491 47 1612 4601 1258404 1255363 0.000000e+00 2429.0
7 TraesCS7B01G339900 chr7D 94.964 1549 72 4 3482 5026 550092683 550094229 0.000000e+00 2423.0
8 TraesCS7B01G339900 chr7D 79.391 3217 572 49 1597 4755 1017989 1014806 0.000000e+00 2183.0
9 TraesCS7B01G339900 chr7D 86.279 809 50 24 5269 6027 550094512 550095309 0.000000e+00 822.0
10 TraesCS7B01G339900 chr7D 95.833 336 11 2 1 333 550071683 550072018 1.910000e-149 540.0
11 TraesCS7B01G339900 chr7D 93.145 248 16 1 5024 5271 92417841 92417595 4.440000e-96 363.0
12 TraesCS7B01G339900 chr7D 79.876 482 89 6 3008 3483 1544305 1544784 4.470000e-91 346.0
13 TraesCS7B01G339900 chr7D 85.079 315 41 5 1004 1313 1258900 1258587 3.510000e-82 316.0
14 TraesCS7B01G339900 chr7D 86.397 272 36 1 1001 1272 1018404 1018134 4.570000e-76 296.0
15 TraesCS7B01G339900 chr7D 80.296 203 29 6 134 333 549955255 549955449 6.300000e-30 143.0
16 TraesCS7B01G339900 chr7D 79.803 203 30 8 134 333 549880484 549880678 2.930000e-28 137.0
17 TraesCS7B01G339900 chr7A 80.442 3216 546 45 1612 4769 1417508 1420698 0.000000e+00 2377.0
18 TraesCS7B01G339900 chr7A 78.257 3247 566 81 1598 4755 668773 665578 0.000000e+00 1956.0
19 TraesCS7B01G339900 chr7A 80.025 2398 418 44 1612 3959 763549 761163 0.000000e+00 1718.0
20 TraesCS7B01G339900 chr7A 84.366 339 40 11 1000 1330 1417031 1417364 2.710000e-83 320.0
21 TraesCS7B01G339900 chr7A 84.472 322 41 6 1000 1316 680423 680106 5.870000e-80 309.0
22 TraesCS7B01G339900 chr7A 88.824 170 13 5 5863 6027 635493279 635493447 2.850000e-48 204.0
23 TraesCS7B01G339900 chr5D 79.678 3233 544 63 1615 4762 464451925 464455129 0.000000e+00 2226.0
24 TraesCS7B01G339900 chr5D 87.938 257 23 7 5022 5274 200034411 200034159 4.570000e-76 296.0
25 TraesCS7B01G339900 chr5D 87.402 254 29 3 5022 5273 200039365 200039113 7.640000e-74 289.0
26 TraesCS7B01G339900 chr5D 85.185 189 17 9 349 527 386689093 386689280 3.710000e-42 183.0
27 TraesCS7B01G339900 chr5D 83.607 183 22 7 351 526 385904497 385904316 1.340000e-36 165.0
28 TraesCS7B01G339900 chr3B 78.593 3340 595 68 1596 4857 747710641 747713938 0.000000e+00 2097.0
29 TraesCS7B01G339900 chr3B 86.111 288 35 3 1001 1284 747709966 747710252 7.590000e-79 305.0
30 TraesCS7B01G339900 chr3B 84.270 178 22 5 346 520 173123256 173123430 1.040000e-37 169.0
31 TraesCS7B01G339900 chr3B 82.564 195 19 11 341 520 263795898 263796092 2.250000e-34 158.0
32 TraesCS7B01G339900 chr3B 100.000 28 0 0 5863 5890 160136205 160136178 1.100000e-02 52.8
33 TraesCS7B01G339900 chrUn 79.184 3041 566 47 1614 4601 89024229 89021203 0.000000e+00 2047.0
34 TraesCS7B01G339900 chrUn 77.803 1784 347 31 3011 4762 51459508 51461274 0.000000e+00 1055.0
35 TraesCS7B01G339900 chr4A 81.284 2367 395 26 1622 3942 743758615 743756251 0.000000e+00 1873.0
36 TraesCS7B01G339900 chr4A 77.671 3229 610 73 1599 4755 743153394 743150205 0.000000e+00 1866.0
37 TraesCS7B01G339900 chr4A 80.628 2421 391 41 1612 3960 743128158 743125744 0.000000e+00 1801.0
38 TraesCS7B01G339900 chr4A 80.183 2402 404 41 1605 3960 744039645 744042020 0.000000e+00 1733.0
39 TraesCS7B01G339900 chr4A 78.173 1434 247 39 2562 3960 743771264 743769862 0.000000e+00 854.0
40 TraesCS7B01G339900 chr4A 85.874 269 38 0 1001 1269 743128617 743128349 2.750000e-73 287.0
41 TraesCS7B01G339900 chr6B 79.588 2087 363 41 2759 4807 654643394 654641333 0.000000e+00 1435.0
42 TraesCS7B01G339900 chr6B 92.265 181 14 0 1007 1187 654645974 654645794 2.160000e-64 257.0
43 TraesCS7B01G339900 chr6B 87.978 183 9 11 347 519 70877369 70877548 2.850000e-48 204.0
44 TraesCS7B01G339900 chr6B 84.574 188 26 3 1614 1799 654645099 654644913 3.710000e-42 183.0
45 TraesCS7B01G339900 chr6D 79.681 1757 294 31 2591 4289 433469983 433468232 0.000000e+00 1208.0
46 TraesCS7B01G339900 chr1D 77.179 872 167 21 2768 3620 491675225 491674367 4.230000e-131 479.0
47 TraesCS7B01G339900 chr1D 100.000 28 0 0 5863 5890 12001952 12001979 1.100000e-02 52.8
48 TraesCS7B01G339900 chr1D 100.000 28 0 0 5863 5890 207279957 207279930 1.100000e-02 52.8
49 TraesCS7B01G339900 chr5A 87.984 258 23 8 5021 5273 632573505 632573759 1.270000e-76 298.0
50 TraesCS7B01G339900 chr5A 87.218 266 23 11 5022 5279 704970392 704970654 5.910000e-75 292.0
51 TraesCS7B01G339900 chr5A 85.938 256 26 10 5022 5272 632586965 632587215 1.290000e-66 265.0
52 TraesCS7B01G339900 chr5A 79.082 196 37 4 1075 1267 19229459 19229653 1.360000e-26 132.0
53 TraesCS7B01G339900 chr3D 89.407 236 24 1 5022 5257 323435024 323435258 4.570000e-76 296.0
54 TraesCS7B01G339900 chr3D 92.029 138 5 6 351 487 431291629 431291761 7.970000e-44 189.0
55 TraesCS7B01G339900 chr2A 86.047 258 25 9 5020 5273 312718524 312718274 3.580000e-67 267.0
56 TraesCS7B01G339900 chr2A 85.827 254 25 9 5022 5271 312713576 312713330 5.990000e-65 259.0
57 TraesCS7B01G339900 chr2D 88.525 183 11 8 348 520 533780296 533780114 4.730000e-51 213.0
58 TraesCS7B01G339900 chr1A 84.343 198 17 9 347 532 553880532 553880337 1.330000e-41 182.0
59 TraesCS7B01G339900 chr2B 84.831 178 18 8 350 520 609150352 609150527 2.890000e-38 171.0
60 TraesCS7B01G339900 chr2B 100.000 29 0 0 5862 5890 779161128 779161100 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G339900 chr7B 594214186 594220212 6026 False 11130.0 11130 100.000000 1 6027 1 chr7B.!!$F2 6026
1 TraesCS7B01G339900 chr7B 111319359 111322572 3213 True 2209.0 2209 79.391000 1605 4803 1 chr7B.!!$R2 3198
2 TraesCS7B01G339900 chr7B 59637911 59641139 3228 True 2143.0 2143 79.076000 1612 4807 1 chr7B.!!$R1 3195
3 TraesCS7B01G339900 chr7D 550071683 550074579 2896 False 2251.0 3962 95.236000 1 3081 2 chr7D.!!$F4 3080
4 TraesCS7B01G339900 chr7D 550092683 550095309 2626 False 1622.5 2423 90.621500 3482 6027 2 chr7D.!!$F5 2545
5 TraesCS7B01G339900 chr7D 1255363 1258900 3537 True 1372.5 2429 83.256500 1004 4601 2 chr7D.!!$R3 3597
6 TraesCS7B01G339900 chr7D 1014806 1018404 3598 True 1239.5 2183 82.894000 1001 4755 2 chr7D.!!$R2 3754
7 TraesCS7B01G339900 chr7A 665578 668773 3195 True 1956.0 1956 78.257000 1598 4755 1 chr7A.!!$R1 3157
8 TraesCS7B01G339900 chr7A 761163 763549 2386 True 1718.0 1718 80.025000 1612 3959 1 chr7A.!!$R3 2347
9 TraesCS7B01G339900 chr7A 1417031 1420698 3667 False 1348.5 2377 82.404000 1000 4769 2 chr7A.!!$F2 3769
10 TraesCS7B01G339900 chr5D 464451925 464455129 3204 False 2226.0 2226 79.678000 1615 4762 1 chr5D.!!$F2 3147
11 TraesCS7B01G339900 chr3B 747709966 747713938 3972 False 1201.0 2097 82.352000 1001 4857 2 chr3B.!!$F3 3856
12 TraesCS7B01G339900 chrUn 89021203 89024229 3026 True 2047.0 2047 79.184000 1614 4601 1 chrUn.!!$R1 2987
13 TraesCS7B01G339900 chrUn 51459508 51461274 1766 False 1055.0 1055 77.803000 3011 4762 1 chrUn.!!$F1 1751
14 TraesCS7B01G339900 chr4A 743756251 743758615 2364 True 1873.0 1873 81.284000 1622 3942 1 chr4A.!!$R2 2320
15 TraesCS7B01G339900 chr4A 743150205 743153394 3189 True 1866.0 1866 77.671000 1599 4755 1 chr4A.!!$R1 3156
16 TraesCS7B01G339900 chr4A 744039645 744042020 2375 False 1733.0 1733 80.183000 1605 3960 1 chr4A.!!$F1 2355
17 TraesCS7B01G339900 chr4A 743125744 743128617 2873 True 1044.0 1801 83.251000 1001 3960 2 chr4A.!!$R4 2959
18 TraesCS7B01G339900 chr4A 743769862 743771264 1402 True 854.0 854 78.173000 2562 3960 1 chr4A.!!$R3 1398
19 TraesCS7B01G339900 chr6B 654641333 654645974 4641 True 625.0 1435 85.475667 1007 4807 3 chr6B.!!$R1 3800
20 TraesCS7B01G339900 chr6D 433468232 433469983 1751 True 1208.0 1208 79.681000 2591 4289 1 chr6D.!!$R1 1698
21 TraesCS7B01G339900 chr1D 491674367 491675225 858 True 479.0 479 77.179000 2768 3620 1 chr1D.!!$R2 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 990 0.179111 GCCGATTGATCTCACCGACA 60.179 55.0 0.00 0.0 0.00 4.35 F
1942 3044 0.398318 AGACCACCCTTGCTCAACTC 59.602 55.0 0.00 0.0 0.00 3.01 F
2831 4001 0.246635 TCTTGCTGAGTCCGTAAGCC 59.753 55.0 7.39 0.0 36.05 4.35 F
4807 6111 0.108424 CGGACTTGGAGAGAGCCTTG 60.108 60.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 3175 0.401356 TTGCAGTGCCTCCATCTCAA 59.599 50.0 13.72 0.0 0.00 3.02 R
3414 4639 0.039708 GCTGTGCACTTTTCTCAGCC 60.040 55.0 19.41 0.0 42.14 4.85 R
4812 6116 0.176680 TCCTCCTCTTGAGAATGCGC 59.823 55.0 0.00 0.0 44.42 6.09 R
5776 7139 0.040692 GAAAACCGTTGGCGTCCTTC 60.041 55.0 0.00 0.0 36.15 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.677567 GAACTTTTGAATGTAAGCAATTAGACA 57.322 29.630 0.00 0.00 0.00 3.41
41 42 5.801350 TGTAAGCAATTAGACATGTCAGC 57.199 39.130 27.02 20.05 0.00 4.26
51 52 2.765135 AGACATGTCAGCTCAGCTATGT 59.235 45.455 27.02 12.54 37.85 2.29
153 154 3.374058 CCTGTTTGCGTTTAGGATCGATT 59.626 43.478 0.00 0.00 31.91 3.34
200 201 2.238942 AACATGACGACAAGCTGACA 57.761 45.000 0.00 0.00 0.00 3.58
219 220 5.804639 TGACAGTAGCATTGGTTGTATTCT 58.195 37.500 0.00 0.00 0.00 2.40
222 223 5.415701 ACAGTAGCATTGGTTGTATTCTTGG 59.584 40.000 0.00 0.00 0.00 3.61
333 337 7.060600 TCAAATGAGCACTGAACTAATAACG 57.939 36.000 0.00 0.00 0.00 3.18
334 338 6.871492 TCAAATGAGCACTGAACTAATAACGA 59.129 34.615 0.00 0.00 0.00 3.85
336 340 6.834959 ATGAGCACTGAACTAATAACGATG 57.165 37.500 0.00 0.00 0.00 3.84
338 342 5.805486 TGAGCACTGAACTAATAACGATGTC 59.195 40.000 0.00 0.00 0.00 3.06
340 344 6.341316 AGCACTGAACTAATAACGATGTCAT 58.659 36.000 0.00 0.00 0.00 3.06
341 345 6.818644 AGCACTGAACTAATAACGATGTCATT 59.181 34.615 0.00 0.00 0.00 2.57
342 346 7.979537 AGCACTGAACTAATAACGATGTCATTA 59.020 33.333 0.00 0.00 0.00 1.90
343 347 8.765219 GCACTGAACTAATAACGATGTCATTAT 58.235 33.333 0.00 0.00 0.00 1.28
357 361 9.825972 ACGATGTCATTATAAGAAACAGTTTTG 57.174 29.630 0.00 0.00 0.00 2.44
358 362 8.788813 CGATGTCATTATAAGAAACAGTTTTGC 58.211 33.333 0.00 0.00 0.00 3.68
359 363 9.846248 GATGTCATTATAAGAAACAGTTTTGCT 57.154 29.630 0.00 0.00 0.00 3.91
367 371 8.677148 ATAAGAAACAGTTTTGCTAAGTCTCA 57.323 30.769 0.00 0.00 0.00 3.27
368 372 6.610741 AGAAACAGTTTTGCTAAGTCTCAG 57.389 37.500 0.00 0.00 0.00 3.35
369 373 6.116126 AGAAACAGTTTTGCTAAGTCTCAGT 58.884 36.000 0.00 0.00 0.00 3.41
370 374 5.993106 AACAGTTTTGCTAAGTCTCAGTC 57.007 39.130 0.00 0.00 0.00 3.51
371 375 4.051922 ACAGTTTTGCTAAGTCTCAGTCG 58.948 43.478 0.00 0.00 0.00 4.18
372 376 4.202121 ACAGTTTTGCTAAGTCTCAGTCGA 60.202 41.667 0.00 0.00 0.00 4.20
373 377 4.149046 CAGTTTTGCTAAGTCTCAGTCGAC 59.851 45.833 7.70 7.70 0.00 4.20
374 378 4.038162 AGTTTTGCTAAGTCTCAGTCGACT 59.962 41.667 13.58 13.58 45.73 4.18
375 379 3.560902 TTGCTAAGTCTCAGTCGACTG 57.439 47.619 34.76 34.76 43.14 3.51
390 394 5.748872 GTCGACTGAGACTTTGTTATGTC 57.251 43.478 8.70 0.00 38.09 3.06
391 395 5.462405 GTCGACTGAGACTTTGTTATGTCT 58.538 41.667 8.70 0.00 45.06 3.41
398 402 5.707242 AGACTTTGTTATGTCTCAGTCGA 57.293 39.130 0.00 0.00 39.04 4.20
399 403 6.274157 AGACTTTGTTATGTCTCAGTCGAT 57.726 37.500 0.00 0.00 39.04 3.59
400 404 6.096036 AGACTTTGTTATGTCTCAGTCGATG 58.904 40.000 0.00 0.00 39.04 3.84
401 405 4.627467 ACTTTGTTATGTCTCAGTCGATGC 59.373 41.667 0.00 0.00 0.00 3.91
402 406 4.456280 TTGTTATGTCTCAGTCGATGCT 57.544 40.909 0.00 0.00 0.00 3.79
403 407 5.576447 TTGTTATGTCTCAGTCGATGCTA 57.424 39.130 0.00 0.00 0.00 3.49
404 408 5.774498 TGTTATGTCTCAGTCGATGCTAT 57.226 39.130 0.00 0.00 0.00 2.97
405 409 6.149129 TGTTATGTCTCAGTCGATGCTATT 57.851 37.500 0.00 0.00 0.00 1.73
406 410 6.573434 TGTTATGTCTCAGTCGATGCTATTT 58.427 36.000 0.00 0.00 0.00 1.40
407 411 7.041721 TGTTATGTCTCAGTCGATGCTATTTT 58.958 34.615 0.00 0.00 0.00 1.82
408 412 7.549134 TGTTATGTCTCAGTCGATGCTATTTTT 59.451 33.333 0.00 0.00 0.00 1.94
431 435 7.804843 TTTTTGATTTTGCATGGAGATTTGT 57.195 28.000 0.00 0.00 0.00 2.83
432 436 8.899427 TTTTTGATTTTGCATGGAGATTTGTA 57.101 26.923 0.00 0.00 0.00 2.41
433 437 9.504708 TTTTTGATTTTGCATGGAGATTTGTAT 57.495 25.926 0.00 0.00 0.00 2.29
498 502 9.877178 ATTACTTATCACTTGGTTAAGTCTCAG 57.123 33.333 8.08 0.00 45.12 3.35
499 503 7.304497 ACTTATCACTTGGTTAAGTCTCAGT 57.696 36.000 0.00 0.00 45.12 3.41
500 504 7.379750 ACTTATCACTTGGTTAAGTCTCAGTC 58.620 38.462 0.00 0.00 45.12 3.51
501 505 4.238761 TCACTTGGTTAAGTCTCAGTCG 57.761 45.455 0.00 0.00 45.12 4.18
502 506 3.887110 TCACTTGGTTAAGTCTCAGTCGA 59.113 43.478 0.00 0.00 45.12 4.20
503 507 3.982058 CACTTGGTTAAGTCTCAGTCGAC 59.018 47.826 7.70 7.70 45.12 4.20
504 508 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
505 509 5.048921 CACTTGGTTAAGTCTCAGTCGACTA 60.049 44.000 19.57 0.00 45.12 2.59
506 510 5.533903 ACTTGGTTAAGTCTCAGTCGACTAA 59.466 40.000 19.57 1.94 43.53 2.24
507 511 5.624344 TGGTTAAGTCTCAGTCGACTAAG 57.376 43.478 19.57 14.47 43.14 2.18
508 512 5.311265 TGGTTAAGTCTCAGTCGACTAAGA 58.689 41.667 19.57 17.01 43.14 2.10
509 513 5.180868 TGGTTAAGTCTCAGTCGACTAAGAC 59.819 44.000 33.03 33.03 43.14 3.01
514 518 4.632688 AGTCTCAGTCGACTAAGACTTAGC 59.367 45.833 35.84 17.76 46.73 3.09
515 519 6.371270 AGTCTCAGTCGACTAAGACTTAGCC 61.371 48.000 35.84 17.12 46.73 3.93
516 520 8.699717 AGTCTCAGTCGACTAAGACTTAGCCA 62.700 46.154 35.84 5.55 46.73 4.75
518 522 3.844577 GTCGACTAAGACTTAGCCACA 57.155 47.619 20.05 1.69 38.09 4.17
519 523 3.500014 GTCGACTAAGACTTAGCCACAC 58.500 50.000 20.05 9.48 38.09 3.82
520 524 3.190953 GTCGACTAAGACTTAGCCACACT 59.809 47.826 20.05 1.71 38.09 3.55
521 525 3.439476 TCGACTAAGACTTAGCCACACTC 59.561 47.826 20.05 9.46 36.71 3.51
522 526 3.440872 CGACTAAGACTTAGCCACACTCT 59.559 47.826 20.05 0.33 36.71 3.24
523 527 4.634883 CGACTAAGACTTAGCCACACTCTA 59.365 45.833 20.05 0.00 36.71 2.43
524 528 5.297278 CGACTAAGACTTAGCCACACTCTAT 59.703 44.000 20.05 0.00 36.71 1.98
525 529 6.183360 CGACTAAGACTTAGCCACACTCTATT 60.183 42.308 20.05 0.00 36.71 1.73
526 530 7.012138 CGACTAAGACTTAGCCACACTCTATTA 59.988 40.741 20.05 0.00 36.71 0.98
534 538 5.763876 AGCCACACTCTATTAAAACTCCT 57.236 39.130 0.00 0.00 0.00 3.69
535 539 5.735766 AGCCACACTCTATTAAAACTCCTC 58.264 41.667 0.00 0.00 0.00 3.71
538 542 6.626623 GCCACACTCTATTAAAACTCCTCGTA 60.627 42.308 0.00 0.00 0.00 3.43
547 551 1.605058 AACTCCTCGTACGCAGCCAT 61.605 55.000 11.24 0.00 0.00 4.40
607 611 6.661304 AATTTCTGAAGAACCTGCTCATTT 57.339 33.333 0.00 0.00 33.13 2.32
690 694 0.548926 TCTTGGATACCCCCAGCACA 60.549 55.000 0.00 0.00 37.53 4.57
691 695 0.394352 CTTGGATACCCCCAGCACAC 60.394 60.000 0.00 0.00 37.53 3.82
720 724 7.169982 GCCTCAAAGCATGTGTATTACTAGTAG 59.830 40.741 2.23 0.00 0.00 2.57
721 725 8.414003 CCTCAAAGCATGTGTATTACTAGTAGA 58.586 37.037 3.59 0.00 0.00 2.59
723 727 8.967918 TCAAAGCATGTGTATTACTAGTAGACT 58.032 33.333 3.59 3.74 0.00 3.24
820 828 1.730446 GCAAAGAGCAAAAGCTAGCCG 60.730 52.381 12.13 0.00 44.79 5.52
915 924 7.122650 TCAGGTGGATTTTGATATTGGTTCTTC 59.877 37.037 0.00 0.00 0.00 2.87
940 949 2.028930 ACATTCTTGGTGTCCTCGTCTC 60.029 50.000 0.00 0.00 0.00 3.36
979 988 0.385751 GAGCCGATTGATCTCACCGA 59.614 55.000 0.00 0.00 0.00 4.69
981 990 0.179111 GCCGATTGATCTCACCGACA 60.179 55.000 0.00 0.00 0.00 4.35
984 993 1.560923 GATTGATCTCACCGACACCG 58.439 55.000 0.00 0.00 0.00 4.94
1313 1343 4.117372 GACGCGCAAGGTTCGTCG 62.117 66.667 5.73 0.00 42.18 5.12
1341 1392 1.694525 TTCCCACAGTCCACCACCA 60.695 57.895 0.00 0.00 0.00 4.17
1382 1433 1.420378 TCAAAGCGCATGTTGCAATG 58.580 45.000 11.47 0.00 45.36 2.82
1390 1441 2.416296 CGCATGTTGCAATGGAATGTCT 60.416 45.455 0.59 0.00 45.36 3.41
1396 1447 6.198650 TGTTGCAATGGAATGTCTTCATAG 57.801 37.500 0.59 0.00 33.49 2.23
1397 1448 5.711506 TGTTGCAATGGAATGTCTTCATAGT 59.288 36.000 0.59 0.00 33.49 2.12
1398 1449 6.209192 TGTTGCAATGGAATGTCTTCATAGTT 59.791 34.615 0.59 0.00 33.49 2.24
1399 1450 6.441093 TGCAATGGAATGTCTTCATAGTTC 57.559 37.500 0.00 0.00 33.49 3.01
1404 1455 8.900781 CAATGGAATGTCTTCATAGTTCTTCAT 58.099 33.333 0.00 0.00 33.49 2.57
1414 1465 6.575244 TCATAGTTCTTCATACAATGGGGT 57.425 37.500 0.00 0.00 0.00 4.95
1416 1467 7.506114 TCATAGTTCTTCATACAATGGGGTAC 58.494 38.462 0.00 0.00 0.00 3.34
1494 1545 9.434559 GTGTTGTTCTTCTTTCAAGTTACATAC 57.565 33.333 0.00 0.00 0.00 2.39
1495 1546 9.391006 TGTTGTTCTTCTTTCAAGTTACATACT 57.609 29.630 0.00 0.00 39.32 2.12
1496 1547 9.865484 GTTGTTCTTCTTTCAAGTTACATACTC 57.135 33.333 0.00 0.00 35.54 2.59
1552 1605 1.024579 CACACCGTTCTACATGGGCC 61.025 60.000 0.00 0.00 35.51 5.80
1599 1715 2.822255 GCACCCGCATCGCCTTAA 60.822 61.111 0.00 0.00 38.36 1.85
1645 2199 2.612221 GGTGCTAAGCTACTTCACCGTT 60.612 50.000 10.33 0.00 37.96 4.44
1657 2211 4.028131 ACTTCACCGTTGATAGTCCCATA 58.972 43.478 0.00 0.00 0.00 2.74
1667 2221 5.687166 TGATAGTCCCATAGTTTTCCGTT 57.313 39.130 0.00 0.00 0.00 4.44
1757 2311 3.965379 TTCACTTCCTTACGCATACCA 57.035 42.857 0.00 0.00 0.00 3.25
1862 2931 3.430929 GGTGGTGAAGATATTGCTCGAGT 60.431 47.826 15.13 0.00 0.00 4.18
1942 3044 0.398318 AGACCACCCTTGCTCAACTC 59.602 55.000 0.00 0.00 0.00 3.01
1978 3080 6.120220 TCAGAGAGTGATGCATCATTTTGAT 58.880 36.000 30.89 14.59 39.30 2.57
2073 3175 5.122869 CCACGATGAAGAAGTGTGAATTGAT 59.877 40.000 0.00 0.00 34.34 2.57
2178 3280 5.500234 TGAAGATAGACAAAAGTGGGATGG 58.500 41.667 0.00 0.00 0.00 3.51
2187 3289 4.202609 ACAAAAGTGGGATGGTCTGAGATT 60.203 41.667 0.00 0.00 0.00 2.40
2366 3468 4.550422 GGAAGTGGAAAAGCAAGATGAAC 58.450 43.478 0.00 0.00 0.00 3.18
2589 3698 7.986889 AGCAAAAATATGTTTTTCCTTCTGTGT 59.013 29.630 9.68 0.00 43.69 3.72
2831 4001 0.246635 TCTTGCTGAGTCCGTAAGCC 59.753 55.000 7.39 0.00 36.05 4.35
3142 4367 7.766219 TTGTTCTTATTCTCTTATACGTGCC 57.234 36.000 0.00 0.00 0.00 5.01
3148 4373 0.464036 CTCTTATACGTGCCCTGCCA 59.536 55.000 0.00 0.00 0.00 4.92
3276 4501 6.828273 CACATCTTCCTCATTGGGTGTTATTA 59.172 38.462 0.00 0.00 36.20 0.98
3315 4540 6.177610 CAAAGGGTATTGGTCAGCTAAGTTA 58.822 40.000 0.00 0.00 0.00 2.24
3331 4556 5.007136 GCTAAGTTATCTGCAGACATTGACC 59.993 44.000 20.97 2.99 0.00 4.02
3352 4577 8.437360 TGACCAATTATGTCATTGATAGTGAC 57.563 34.615 6.01 0.00 44.77 3.67
3414 4639 2.232208 GTGGGGCTCTTTCTTTGATTGG 59.768 50.000 0.00 0.00 0.00 3.16
3433 4658 3.468780 GCTGAGAAAAGTGCACAGC 57.531 52.632 21.04 13.45 44.88 4.40
3645 4894 5.300411 TCATTGTGGATGCATGACTCTAT 57.700 39.130 2.46 0.00 35.64 1.98
3692 4941 2.893489 TCTCTGAGTAGCTGCAAGAACA 59.107 45.455 4.12 0.00 34.07 3.18
3820 5075 2.494059 GAATCATGTATGTCCCCACCG 58.506 52.381 0.00 0.00 0.00 4.94
4005 5260 4.998671 TGCTTGAAGATCTAGAGGTGAG 57.001 45.455 0.00 0.00 0.00 3.51
4008 5264 4.441356 GCTTGAAGATCTAGAGGTGAGGTG 60.441 50.000 0.00 0.00 0.00 4.00
4010 5275 3.269643 TGAAGATCTAGAGGTGAGGTGGA 59.730 47.826 0.00 0.00 0.00 4.02
4035 5309 4.149598 ACAAAGATCCCCTTTTACCACAC 58.850 43.478 0.00 0.00 42.13 3.82
4109 5404 1.001764 CCTGCTGGTTGGCTGATGA 60.002 57.895 0.51 0.00 33.89 2.92
4175 5470 7.746475 CACTGAAATTAAAAGATCTCGTGGAAC 59.254 37.037 0.00 0.00 0.00 3.62
4417 5718 4.686091 TCTCTGCACTTGAGTAATTGTTCG 59.314 41.667 1.80 0.00 33.59 3.95
4483 5787 2.072298 CTGCCTCCTCGACTCAAAAAG 58.928 52.381 0.00 0.00 0.00 2.27
4519 5823 6.446781 AGCTGTGAAAATATGATGGAAGTG 57.553 37.500 0.00 0.00 0.00 3.16
4533 5837 0.746659 GAAGTGCCAAAGTTGCCTGT 59.253 50.000 0.00 0.00 0.00 4.00
4630 5934 3.744660 TCTGAGAAGACTTTTTCTGGCC 58.255 45.455 0.00 0.00 37.53 5.36
4807 6111 0.108424 CGGACTTGGAGAGAGCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
4812 6116 1.892819 TTGGAGAGAGCCTTGGCGAG 61.893 60.000 5.95 0.00 0.00 5.03
4813 6117 2.202864 GAGAGAGCCTTGGCGAGC 60.203 66.667 5.95 0.42 0.00 5.03
4858 6162 2.545106 CTGGCATTTGGTTGAAGCAAAC 59.455 45.455 22.72 12.21 46.54 2.93
4882 6186 5.049828 TCACATAGAGGCATATCAACAACG 58.950 41.667 0.00 0.00 0.00 4.10
4886 6190 6.040504 ACATAGAGGCATATCAACAACGTCTA 59.959 38.462 0.00 0.00 33.70 2.59
4892 6196 5.295787 GGCATATCAACAACGTCTAATGGAA 59.704 40.000 0.00 0.00 0.00 3.53
4925 6229 0.252479 AAGTGGAGAGATGGCTGCTG 59.748 55.000 0.00 0.00 0.00 4.41
4928 6232 1.227615 GGAGAGATGGCTGCTGCTC 60.228 63.158 15.64 6.14 39.59 4.26
4958 6265 1.229927 GCCATCAACCCATGCCCTA 59.770 57.895 0.00 0.00 0.00 3.53
5026 6333 1.073763 ACCCTGTGCATGCTCTGTTAA 59.926 47.619 20.33 0.00 0.00 2.01
5027 6334 1.741706 CCCTGTGCATGCTCTGTTAAG 59.258 52.381 20.33 8.06 0.00 1.85
5028 6335 1.131883 CCTGTGCATGCTCTGTTAAGC 59.868 52.381 20.33 0.00 42.82 3.09
5041 6348 6.641062 GCTCTGTTAAGCAACGTATAATCTG 58.359 40.000 0.00 0.00 42.05 2.90
5042 6349 6.583912 TCTGTTAAGCAACGTATAATCTGC 57.416 37.500 0.00 0.00 37.48 4.26
5043 6350 5.522460 TCTGTTAAGCAACGTATAATCTGCC 59.478 40.000 4.11 0.00 37.48 4.85
5044 6351 5.424757 TGTTAAGCAACGTATAATCTGCCT 58.575 37.500 4.11 0.00 37.48 4.75
5045 6352 6.575267 TGTTAAGCAACGTATAATCTGCCTA 58.425 36.000 4.11 0.00 37.48 3.93
5046 6353 6.700081 TGTTAAGCAACGTATAATCTGCCTAG 59.300 38.462 4.11 0.00 37.48 3.02
5048 6355 4.872664 AGCAACGTATAATCTGCCTAGTC 58.127 43.478 4.11 0.00 35.33 2.59
5050 6357 4.792057 GCAACGTATAATCTGCCTAGTCGT 60.792 45.833 0.00 0.00 0.00 4.34
5053 6360 4.024218 ACGTATAATCTGCCTAGTCGTGAC 60.024 45.833 0.00 0.00 0.00 3.67
5055 6362 2.949451 AATCTGCCTAGTCGTGACAG 57.051 50.000 2.44 0.00 0.00 3.51
5056 6363 1.107114 ATCTGCCTAGTCGTGACAGG 58.893 55.000 2.44 8.14 34.72 4.00
5057 6364 0.251209 TCTGCCTAGTCGTGACAGGT 60.251 55.000 15.26 0.00 34.37 4.00
5058 6365 0.603569 CTGCCTAGTCGTGACAGGTT 59.396 55.000 15.26 0.00 34.37 3.50
5060 6367 0.601558 GCCTAGTCGTGACAGGTTGA 59.398 55.000 15.26 0.00 34.37 3.18
5062 6369 2.927014 GCCTAGTCGTGACAGGTTGAAG 60.927 54.545 15.26 0.00 34.37 3.02
5064 6371 2.510768 AGTCGTGACAGGTTGAAGAC 57.489 50.000 2.44 0.00 0.00 3.01
5065 6372 2.032620 AGTCGTGACAGGTTGAAGACT 58.967 47.619 2.44 0.00 33.27 3.24
5067 6374 2.540101 GTCGTGACAGGTTGAAGACTTG 59.460 50.000 0.00 0.00 40.89 3.16
5068 6375 1.261619 CGTGACAGGTTGAAGACTTGC 59.738 52.381 0.00 0.00 38.83 4.01
5069 6376 1.261619 GTGACAGGTTGAAGACTTGCG 59.738 52.381 0.00 0.00 38.83 4.85
5070 6377 1.134521 TGACAGGTTGAAGACTTGCGT 60.135 47.619 0.00 0.00 38.83 5.24
5072 6379 1.940613 ACAGGTTGAAGACTTGCGTTC 59.059 47.619 0.00 0.00 38.83 3.95
5073 6380 1.264288 CAGGTTGAAGACTTGCGTTCC 59.736 52.381 0.00 0.00 0.00 3.62
5074 6381 1.134220 AGGTTGAAGACTTGCGTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
5075 6382 1.673920 GGTTGAAGACTTGCGTTCCAA 59.326 47.619 0.00 0.00 0.00 3.53
5082 6389 3.625745 CTTGCGTTCCAAGGGTAGT 57.374 52.632 0.00 0.00 45.78 2.73
5083 6390 1.439679 CTTGCGTTCCAAGGGTAGTC 58.560 55.000 0.00 0.00 45.78 2.59
5084 6391 0.035739 TTGCGTTCCAAGGGTAGTCC 59.964 55.000 0.00 0.00 0.00 3.85
5086 6393 1.217244 CGTTCCAAGGGTAGTCCGG 59.783 63.158 0.00 0.00 41.52 5.14
5087 6394 1.078637 GTTCCAAGGGTAGTCCGGC 60.079 63.158 0.00 0.00 41.52 6.13
5088 6395 2.652095 TTCCAAGGGTAGTCCGGCG 61.652 63.158 0.00 0.00 41.52 6.46
5091 6398 1.436336 CAAGGGTAGTCCGGCGTAG 59.564 63.158 6.01 0.00 41.52 3.51
5092 6399 1.033746 CAAGGGTAGTCCGGCGTAGA 61.034 60.000 6.01 0.00 41.52 2.59
5094 6401 0.767375 AGGGTAGTCCGGCGTAGATA 59.233 55.000 6.01 0.00 41.52 1.98
5095 6402 1.163554 GGGTAGTCCGGCGTAGATAG 58.836 60.000 6.01 0.00 33.83 2.08
5096 6403 1.163554 GGTAGTCCGGCGTAGATAGG 58.836 60.000 6.01 0.00 0.00 2.57
5097 6404 0.520847 GTAGTCCGGCGTAGATAGGC 59.479 60.000 6.01 0.00 36.43 3.93
5104 6411 3.290776 GCGTAGATAGGCCAGGTTG 57.709 57.895 5.01 0.00 0.00 3.77
5105 6412 0.464452 GCGTAGATAGGCCAGGTTGT 59.536 55.000 5.01 0.00 0.00 3.32
5106 6413 1.134491 GCGTAGATAGGCCAGGTTGTT 60.134 52.381 5.01 0.00 0.00 2.83
5109 6416 3.729966 GTAGATAGGCCAGGTTGTTAGC 58.270 50.000 5.01 0.00 0.00 3.09
5110 6417 2.196595 AGATAGGCCAGGTTGTTAGCA 58.803 47.619 5.01 0.00 0.00 3.49
5112 6419 3.973973 AGATAGGCCAGGTTGTTAGCATA 59.026 43.478 5.01 0.00 0.00 3.14
5115 6422 4.357918 AGGCCAGGTTGTTAGCATATAG 57.642 45.455 5.01 0.00 0.00 1.31
5116 6423 3.716872 AGGCCAGGTTGTTAGCATATAGT 59.283 43.478 5.01 0.00 0.00 2.12
5117 6424 4.166144 AGGCCAGGTTGTTAGCATATAGTT 59.834 41.667 5.01 0.00 0.00 2.24
5118 6425 4.887655 GGCCAGGTTGTTAGCATATAGTTT 59.112 41.667 0.00 0.00 0.00 2.66
5119 6426 6.059484 GGCCAGGTTGTTAGCATATAGTTTA 58.941 40.000 0.00 0.00 0.00 2.01
5120 6427 6.715264 GGCCAGGTTGTTAGCATATAGTTTAT 59.285 38.462 0.00 0.00 0.00 1.40
5121 6428 7.094762 GGCCAGGTTGTTAGCATATAGTTTATC 60.095 40.741 0.00 0.00 0.00 1.75
5123 6430 9.561069 CCAGGTTGTTAGCATATAGTTTATCTT 57.439 33.333 0.00 0.00 0.00 2.40
5157 6464 9.351572 ACTCTATCTCTCTATCTTCTTATCCCT 57.648 37.037 0.00 0.00 0.00 4.20
5159 6466 9.973661 TCTATCTCTCTATCTTCTTATCCCTTG 57.026 37.037 0.00 0.00 0.00 3.61
5160 6467 9.753674 CTATCTCTCTATCTTCTTATCCCTTGT 57.246 37.037 0.00 0.00 0.00 3.16
5163 6470 7.945664 TCTCTCTATCTTCTTATCCCTTGTACC 59.054 40.741 0.00 0.00 0.00 3.34
5167 6474 6.636454 ATCTTCTTATCCCTTGTACCACAA 57.364 37.500 0.00 0.00 36.54 3.33
5182 6489 8.967664 TTGTACCACAAGTTGTAATCTTAACT 57.032 30.769 8.49 0.00 38.70 2.24
5191 6498 7.675270 AGTTGTAATCTTAACTATGTACGCG 57.325 36.000 3.53 3.53 35.50 6.01
5192 6499 7.475015 AGTTGTAATCTTAACTATGTACGCGA 58.525 34.615 15.93 0.00 35.50 5.87
5193 6500 8.133627 AGTTGTAATCTTAACTATGTACGCGAT 58.866 33.333 15.93 0.00 35.50 4.58
5195 6502 7.080099 TGTAATCTTAACTATGTACGCGATCC 58.920 38.462 15.93 0.00 0.00 3.36
5196 6503 4.137849 TCTTAACTATGTACGCGATCCG 57.862 45.455 15.93 0.00 44.21 4.18
5197 6504 2.975410 TAACTATGTACGCGATCCGG 57.025 50.000 15.93 0.00 42.52 5.14
5198 6505 1.027357 AACTATGTACGCGATCCGGT 58.973 50.000 15.93 0.93 42.52 5.28
5200 6507 0.589708 CTATGTACGCGATCCGGTGA 59.410 55.000 15.93 0.00 42.52 4.02
5201 6508 0.589708 TATGTACGCGATCCGGTGAG 59.410 55.000 15.93 0.00 42.52 3.51
5202 6509 1.381928 ATGTACGCGATCCGGTGAGT 61.382 55.000 15.93 3.46 42.52 3.41
5203 6510 1.138247 GTACGCGATCCGGTGAGTT 59.862 57.895 15.93 0.00 42.52 3.01
5204 6511 1.138036 TACGCGATCCGGTGAGTTG 59.862 57.895 15.93 0.00 42.52 3.16
5205 6512 2.877360 TACGCGATCCGGTGAGTTGC 62.877 60.000 15.93 1.21 42.52 4.17
5206 6513 3.554692 GCGATCCGGTGAGTTGCG 61.555 66.667 0.00 0.00 0.00 4.85
5207 6514 3.554692 CGATCCGGTGAGTTGCGC 61.555 66.667 0.00 0.00 0.00 6.09
5208 6515 3.195698 GATCCGGTGAGTTGCGCC 61.196 66.667 4.18 0.00 43.96 6.53
5213 6520 4.643387 GGTGAGTTGCGCCCCAGT 62.643 66.667 4.18 0.00 41.49 4.00
5215 6522 1.078426 GTGAGTTGCGCCCCAGTAT 60.078 57.895 4.18 0.00 0.00 2.12
5216 6523 0.177141 GTGAGTTGCGCCCCAGTATA 59.823 55.000 4.18 0.00 0.00 1.47
5217 6524 1.128200 TGAGTTGCGCCCCAGTATAT 58.872 50.000 4.18 0.00 0.00 0.86
5218 6525 1.488812 TGAGTTGCGCCCCAGTATATT 59.511 47.619 4.18 0.00 0.00 1.28
5219 6526 2.701423 TGAGTTGCGCCCCAGTATATTA 59.299 45.455 4.18 0.00 0.00 0.98
5221 6528 3.473625 AGTTGCGCCCCAGTATATTAAC 58.526 45.455 4.18 0.00 0.00 2.01
5222 6529 3.118186 AGTTGCGCCCCAGTATATTAACA 60.118 43.478 4.18 0.00 0.00 2.41
5223 6530 2.841215 TGCGCCCCAGTATATTAACAC 58.159 47.619 4.18 0.00 0.00 3.32
5224 6531 1.796459 GCGCCCCAGTATATTAACACG 59.204 52.381 0.00 0.00 0.00 4.49
5226 6533 3.719924 CGCCCCAGTATATTAACACGAA 58.280 45.455 0.00 0.00 0.00 3.85
5227 6534 3.739300 CGCCCCAGTATATTAACACGAAG 59.261 47.826 0.00 0.00 0.00 3.79
5229 6536 4.062991 CCCCAGTATATTAACACGAAGCC 58.937 47.826 0.00 0.00 0.00 4.35
5230 6537 3.739300 CCCAGTATATTAACACGAAGCCG 59.261 47.826 0.00 0.00 42.50 5.52
5244 6551 2.815647 GCCGTCGGCCAGAGAAAG 60.816 66.667 26.23 0.00 44.06 2.62
5245 6552 2.125512 CCGTCGGCCAGAGAAAGG 60.126 66.667 2.24 0.00 0.00 3.11
5246 6553 2.657237 CGTCGGCCAGAGAAAGGT 59.343 61.111 2.24 0.00 0.00 3.50
5248 6555 0.458025 CGTCGGCCAGAGAAAGGTAC 60.458 60.000 2.24 0.00 0.00 3.34
5250 6557 0.609957 TCGGCCAGAGAAAGGTACGA 60.610 55.000 2.24 0.00 36.08 3.43
5251 6558 0.460311 CGGCCAGAGAAAGGTACGAT 59.540 55.000 2.24 0.00 32.85 3.73
5252 6559 1.802880 CGGCCAGAGAAAGGTACGATG 60.803 57.143 2.24 0.00 32.85 3.84
5253 6560 1.207329 GGCCAGAGAAAGGTACGATGT 59.793 52.381 0.00 0.00 0.00 3.06
5254 6561 2.354805 GGCCAGAGAAAGGTACGATGTT 60.355 50.000 0.00 0.00 0.00 2.71
5255 6562 3.118884 GGCCAGAGAAAGGTACGATGTTA 60.119 47.826 0.00 0.00 0.00 2.41
5256 6563 4.501071 GCCAGAGAAAGGTACGATGTTAA 58.499 43.478 0.00 0.00 0.00 2.01
5259 6566 5.347907 CCAGAGAAAGGTACGATGTTAACAC 59.652 44.000 11.22 4.38 0.00 3.32
5260 6567 5.924254 CAGAGAAAGGTACGATGTTAACACA 59.076 40.000 11.22 0.00 37.31 3.72
5261 6568 6.422701 CAGAGAAAGGTACGATGTTAACACAA 59.577 38.462 11.22 0.00 36.16 3.33
5262 6569 6.645415 AGAGAAAGGTACGATGTTAACACAAG 59.355 38.462 11.22 7.78 36.16 3.16
5263 6570 6.285990 AGAAAGGTACGATGTTAACACAAGT 58.714 36.000 11.22 13.14 36.16 3.16
5265 6572 6.930667 AAGGTACGATGTTAACACAAGTTT 57.069 33.333 11.22 0.00 39.15 2.66
5266 6573 6.930667 AGGTACGATGTTAACACAAGTTTT 57.069 33.333 11.22 0.00 39.15 2.43
5267 6574 6.951643 AGGTACGATGTTAACACAAGTTTTC 58.048 36.000 11.22 1.68 39.15 2.29
5302 6649 5.499139 TTCAACACTTGTGATTCAACCTC 57.501 39.130 7.83 0.00 32.18 3.85
5316 6663 1.478510 CAACCTCGGTCAGTCATAGCT 59.521 52.381 0.00 0.00 0.00 3.32
5332 6679 8.955388 CAGTCATAGCTGTATCTATCTGTGTAT 58.045 37.037 0.00 0.00 0.00 2.29
5335 6685 9.959721 TCATAGCTGTATCTATCTGTGTATGTA 57.040 33.333 0.00 0.00 0.00 2.29
5350 6700 6.689554 TGTGTATGTACGGAAGAACAATGTA 58.310 36.000 0.00 0.00 0.00 2.29
5362 6712 5.181690 AGAACAATGTATGTGCACGTTTT 57.818 34.783 18.34 6.33 42.99 2.43
5363 6713 6.307031 AGAACAATGTATGTGCACGTTTTA 57.693 33.333 18.34 4.48 42.99 1.52
5364 6714 6.908825 AGAACAATGTATGTGCACGTTTTAT 58.091 32.000 18.34 4.22 42.99 1.40
5365 6715 7.021196 AGAACAATGTATGTGCACGTTTTATC 58.979 34.615 18.34 10.21 42.99 1.75
5366 6716 6.494893 ACAATGTATGTGCACGTTTTATCT 57.505 33.333 18.34 0.00 41.93 1.98
5367 6717 6.314018 ACAATGTATGTGCACGTTTTATCTG 58.686 36.000 18.34 9.89 41.93 2.90
5383 6737 0.865111 TCTGTTGAAATGCACCGTCG 59.135 50.000 0.00 0.00 0.00 5.12
5392 6746 0.884704 ATGCACCGTCGCTTGTTCTT 60.885 50.000 0.00 0.00 0.00 2.52
5397 6751 2.954611 GTCGCTTGTTCTTGGCCC 59.045 61.111 0.00 0.00 0.00 5.80
5399 6753 2.597217 CGCTTGTTCTTGGCCCCA 60.597 61.111 0.00 0.00 0.00 4.96
5455 6809 4.717313 GGGAGACCGTGTTGGGGC 62.717 72.222 0.00 0.00 44.64 5.80
5474 6828 4.404098 GGGGAAGCGCCGAGGAAA 62.404 66.667 2.29 0.00 37.63 3.13
5489 6843 3.379372 CGAGGAAATGCATCCATGTTCTT 59.621 43.478 9.02 1.01 42.27 2.52
5494 6848 1.466856 TGCATCCATGTTCTTGGCTC 58.533 50.000 0.00 0.00 36.66 4.70
5501 6855 0.541863 ATGTTCTTGGCTCCTACCGG 59.458 55.000 0.00 0.00 0.00 5.28
5540 6894 2.227626 TCTCTCATCATCGATCGGAAGC 59.772 50.000 16.41 0.00 0.00 3.86
5567 6923 2.123251 GAGGATCTCGCTCCCCCA 60.123 66.667 0.00 0.00 35.79 4.96
5569 6925 2.123251 GGATCTCGCTCCCCCAGA 60.123 66.667 0.00 0.00 0.00 3.86
5580 6936 2.221299 CCCCCAGAGAACCGAACCA 61.221 63.158 0.00 0.00 0.00 3.67
5584 6943 0.944311 CCAGAGAACCGAACCACACG 60.944 60.000 0.00 0.00 0.00 4.49
5611 6970 3.568907 CTGCGCAACACAGCTCACG 62.569 63.158 13.05 0.00 0.00 4.35
5654 7017 2.106683 CCTCGTGGAAATGGTCGCC 61.107 63.158 0.00 0.00 34.57 5.54
5673 7036 1.546998 CCCCAAGTGACCCAAAGTACC 60.547 57.143 0.00 0.00 0.00 3.34
5682 7045 0.325602 CCCAAAGTACCAAGCCCGTA 59.674 55.000 0.00 0.00 0.00 4.02
5712 7075 1.153289 CGATCTGGCTTGTGGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
5730 7093 0.541863 GGCAGGTGTACAGTAGGCAT 59.458 55.000 0.00 0.00 0.00 4.40
5795 7158 0.040692 GAAGGACGCCAACGGTTTTC 60.041 55.000 0.00 0.00 46.04 2.29
5798 7161 2.124236 ACGCCAACGGTTTTCCCA 60.124 55.556 0.00 0.00 46.04 4.37
5799 7162 1.726533 GACGCCAACGGTTTTCCCAA 61.727 55.000 0.00 0.00 46.04 4.12
5800 7163 1.321074 ACGCCAACGGTTTTCCCAAA 61.321 50.000 0.00 0.00 46.04 3.28
5801 7164 0.179108 CGCCAACGGTTTTCCCAAAA 60.179 50.000 0.00 0.00 36.42 2.44
5802 7165 1.539280 CGCCAACGGTTTTCCCAAAAT 60.539 47.619 0.00 0.00 36.42 1.82
5803 7166 2.566913 GCCAACGGTTTTCCCAAAATT 58.433 42.857 0.00 0.00 36.42 1.82
5804 7167 2.546368 GCCAACGGTTTTCCCAAAATTC 59.454 45.455 0.00 0.00 36.42 2.17
5805 7168 3.742954 GCCAACGGTTTTCCCAAAATTCT 60.743 43.478 0.00 0.00 36.42 2.40
5806 7169 4.501743 GCCAACGGTTTTCCCAAAATTCTA 60.502 41.667 0.00 0.00 36.42 2.10
5807 7170 4.986034 CCAACGGTTTTCCCAAAATTCTAC 59.014 41.667 0.00 0.00 36.42 2.59
5808 7171 5.221362 CCAACGGTTTTCCCAAAATTCTACT 60.221 40.000 0.00 0.00 36.42 2.57
5809 7172 5.700722 ACGGTTTTCCCAAAATTCTACTC 57.299 39.130 0.00 0.00 36.42 2.59
5810 7173 4.521639 ACGGTTTTCCCAAAATTCTACTCC 59.478 41.667 0.00 0.00 36.42 3.85
5811 7174 4.082408 CGGTTTTCCCAAAATTCTACTCCC 60.082 45.833 0.00 0.00 36.42 4.30
5812 7175 5.084519 GGTTTTCCCAAAATTCTACTCCCT 58.915 41.667 0.00 0.00 32.22 4.20
5813 7176 5.185249 GGTTTTCCCAAAATTCTACTCCCTC 59.815 44.000 0.00 0.00 32.22 4.30
5814 7177 4.586306 TTCCCAAAATTCTACTCCCTCC 57.414 45.455 0.00 0.00 0.00 4.30
5815 7178 2.504175 TCCCAAAATTCTACTCCCTCCG 59.496 50.000 0.00 0.00 0.00 4.63
5816 7179 2.504175 CCCAAAATTCTACTCCCTCCGA 59.496 50.000 0.00 0.00 0.00 4.55
5817 7180 3.136626 CCCAAAATTCTACTCCCTCCGAT 59.863 47.826 0.00 0.00 0.00 4.18
5818 7181 4.385310 CCCAAAATTCTACTCCCTCCGATT 60.385 45.833 0.00 0.00 0.00 3.34
5819 7182 4.816925 CCAAAATTCTACTCCCTCCGATTC 59.183 45.833 0.00 0.00 0.00 2.52
5820 7183 4.691326 AAATTCTACTCCCTCCGATTCC 57.309 45.455 0.00 0.00 0.00 3.01
5821 7184 1.688772 TTCTACTCCCTCCGATTCCG 58.311 55.000 0.00 0.00 0.00 4.30
5822 7185 0.841961 TCTACTCCCTCCGATTCCGA 59.158 55.000 0.00 0.00 38.22 4.55
5823 7186 1.424302 TCTACTCCCTCCGATTCCGAT 59.576 52.381 0.00 0.00 38.22 4.18
5824 7187 1.813786 CTACTCCCTCCGATTCCGATC 59.186 57.143 0.00 0.00 38.22 3.69
5825 7188 0.828343 ACTCCCTCCGATTCCGATCC 60.828 60.000 0.00 0.00 38.22 3.36
5826 7189 1.533273 TCCCTCCGATTCCGATCCC 60.533 63.158 0.00 0.00 38.22 3.85
5827 7190 1.837051 CCCTCCGATTCCGATCCCA 60.837 63.158 0.00 0.00 38.22 4.37
5828 7191 1.194781 CCCTCCGATTCCGATCCCAT 61.195 60.000 0.00 0.00 38.22 4.00
5851 7214 0.883370 GTCCGCCCAGAAAACGTCTT 60.883 55.000 0.00 0.00 32.70 3.01
5879 7293 5.615289 GGAGGCTAAAGAAATATGAGAGCA 58.385 41.667 0.00 0.00 0.00 4.26
5896 7310 6.341316 TGAGAGCATTTAGATCACCAACTAC 58.659 40.000 0.00 0.00 34.30 2.73
5903 7317 7.434492 CATTTAGATCACCAACTACTACCGAT 58.566 38.462 0.00 0.00 0.00 4.18
5906 7320 3.090210 TCACCAACTACTACCGATGGA 57.910 47.619 0.00 0.00 35.16 3.41
5911 7325 3.003068 CCAACTACTACCGATGGAGTACG 59.997 52.174 0.00 0.00 32.82 3.67
5969 7384 3.803778 GGGAACTGTGCTTGAAAACATTG 59.196 43.478 0.00 0.00 0.00 2.82
5982 7397 7.433708 TTGAAAACATTGATCACACGATACT 57.566 32.000 0.00 0.00 29.66 2.12
5983 7398 7.060600 TGAAAACATTGATCACACGATACTC 57.939 36.000 0.00 0.00 29.66 2.59
5990 7409 3.628032 TGATCACACGATACTCCAGAGTC 59.372 47.826 3.00 0.00 42.54 3.36
6004 7423 2.350868 CCAGAGTCGACATGCGTATAGG 60.351 54.545 19.50 2.43 41.80 2.57
6012 7431 3.579709 GACATGCGTATAGGTCATCCAG 58.420 50.000 0.00 0.00 35.89 3.86
6013 7432 3.230976 ACATGCGTATAGGTCATCCAGA 58.769 45.455 0.00 0.00 35.89 3.86
6014 7433 3.641436 ACATGCGTATAGGTCATCCAGAA 59.359 43.478 0.00 0.00 35.89 3.02
6016 7435 4.955811 TGCGTATAGGTCATCCAGAATT 57.044 40.909 0.00 0.00 35.89 2.17
6017 7436 4.883083 TGCGTATAGGTCATCCAGAATTC 58.117 43.478 0.00 0.00 35.89 2.17
6018 7437 4.343814 TGCGTATAGGTCATCCAGAATTCA 59.656 41.667 8.44 0.00 35.89 2.57
6019 7438 4.926238 GCGTATAGGTCATCCAGAATTCAG 59.074 45.833 8.44 0.00 35.89 3.02
6020 7439 5.279006 GCGTATAGGTCATCCAGAATTCAGA 60.279 44.000 8.44 4.41 35.89 3.27
6021 7440 6.153067 CGTATAGGTCATCCAGAATTCAGAC 58.847 44.000 8.44 7.23 35.89 3.51
6022 7441 6.239036 CGTATAGGTCATCCAGAATTCAGACA 60.239 42.308 8.44 0.00 35.89 3.41
6024 7443 3.054802 AGGTCATCCAGAATTCAGACACC 60.055 47.826 8.44 12.59 35.89 4.16
6025 7444 3.307691 GGTCATCCAGAATTCAGACACCA 60.308 47.826 8.44 0.00 0.00 4.17
6026 7445 4.521146 GTCATCCAGAATTCAGACACCAT 58.479 43.478 8.44 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.118170 AGCTGACATGTCTAATTGCTTACAT 58.882 36.000 25.55 4.84 32.91 2.29
34 35 6.459298 GCAAAAATACATAGCTGAGCTGACAT 60.459 38.462 18.79 0.00 40.10 3.06
41 42 6.511767 CGGTAAGGCAAAAATACATAGCTGAG 60.512 42.308 0.00 0.00 0.00 3.35
51 52 7.706100 AGTATTTTCCGGTAAGGCAAAAATA 57.294 32.000 0.00 6.13 38.56 1.40
153 154 2.086869 GCTACTGATCAAAGCAGGCAA 58.913 47.619 19.80 0.00 37.69 4.52
200 201 4.949856 CCCAAGAATACAACCAATGCTACT 59.050 41.667 0.00 0.00 0.00 2.57
219 220 5.946972 TCTTTTTACAGACAACAGTTCCCAA 59.053 36.000 0.00 0.00 0.00 4.12
222 223 6.417930 GCAATCTTTTTACAGACAACAGTTCC 59.582 38.462 0.00 0.00 0.00 3.62
262 263 7.029563 GCAAAGATGTTACGAGAAATTCCAAT 58.970 34.615 0.00 0.00 0.00 3.16
263 264 6.378582 GCAAAGATGTTACGAGAAATTCCAA 58.621 36.000 0.00 0.00 0.00 3.53
278 279 3.571401 CCAAGAACAAGAGGCAAAGATGT 59.429 43.478 0.00 0.00 0.00 3.06
279 280 3.822735 TCCAAGAACAAGAGGCAAAGATG 59.177 43.478 0.00 0.00 0.00 2.90
333 337 9.846248 AGCAAAACTGTTTCTTATAATGACATC 57.154 29.630 6.20 0.00 0.00 3.06
341 345 9.772973 TGAGACTTAGCAAAACTGTTTCTTATA 57.227 29.630 6.20 0.00 0.00 0.98
342 346 8.677148 TGAGACTTAGCAAAACTGTTTCTTAT 57.323 30.769 6.20 0.00 0.00 1.73
343 347 7.769044 ACTGAGACTTAGCAAAACTGTTTCTTA 59.231 33.333 6.20 0.00 0.00 2.10
344 348 6.599638 ACTGAGACTTAGCAAAACTGTTTCTT 59.400 34.615 6.20 0.00 0.00 2.52
345 349 6.116126 ACTGAGACTTAGCAAAACTGTTTCT 58.884 36.000 6.20 3.18 0.00 2.52
346 350 6.364945 ACTGAGACTTAGCAAAACTGTTTC 57.635 37.500 6.20 0.00 0.00 2.78
347 351 5.006746 CGACTGAGACTTAGCAAAACTGTTT 59.993 40.000 0.00 0.00 0.00 2.83
348 352 4.508124 CGACTGAGACTTAGCAAAACTGTT 59.492 41.667 0.00 0.00 0.00 3.16
349 353 4.051922 CGACTGAGACTTAGCAAAACTGT 58.948 43.478 0.00 0.00 0.00 3.55
350 354 4.149046 GTCGACTGAGACTTAGCAAAACTG 59.851 45.833 8.70 0.00 38.09 3.16
351 355 4.299978 GTCGACTGAGACTTAGCAAAACT 58.700 43.478 8.70 0.00 38.09 2.66
352 356 4.632740 GTCGACTGAGACTTAGCAAAAC 57.367 45.455 8.70 0.00 38.09 2.43
366 370 5.223382 ACATAACAAAGTCTCAGTCGACTG 58.777 41.667 34.76 34.76 43.14 3.51
367 371 5.241949 AGACATAACAAAGTCTCAGTCGACT 59.758 40.000 13.58 13.58 45.73 4.18
368 372 5.462405 AGACATAACAAAGTCTCAGTCGAC 58.538 41.667 7.70 7.70 40.96 4.20
369 373 5.707242 AGACATAACAAAGTCTCAGTCGA 57.293 39.130 0.00 0.00 40.96 4.20
377 381 5.220303 GCATCGACTGAGACATAACAAAGTC 60.220 44.000 0.00 0.00 35.02 3.01
378 382 4.627467 GCATCGACTGAGACATAACAAAGT 59.373 41.667 0.00 0.00 0.00 2.66
379 383 4.867047 AGCATCGACTGAGACATAACAAAG 59.133 41.667 0.00 0.00 0.00 2.77
380 384 4.820897 AGCATCGACTGAGACATAACAAA 58.179 39.130 0.00 0.00 0.00 2.83
381 385 4.456280 AGCATCGACTGAGACATAACAA 57.544 40.909 0.00 0.00 0.00 2.83
382 386 5.774498 ATAGCATCGACTGAGACATAACA 57.226 39.130 0.00 0.00 0.00 2.41
383 387 7.470289 AAAATAGCATCGACTGAGACATAAC 57.530 36.000 0.00 0.00 0.00 1.89
407 411 7.804843 ACAAATCTCCATGCAAAATCAAAAA 57.195 28.000 0.00 0.00 0.00 1.94
472 476 9.877178 CTGAGACTTAACCAAGTGATAAGTAAT 57.123 33.333 8.52 3.46 45.18 1.89
473 477 8.867097 ACTGAGACTTAACCAAGTGATAAGTAA 58.133 33.333 8.52 1.25 45.18 2.24
474 478 8.418597 ACTGAGACTTAACCAAGTGATAAGTA 57.581 34.615 8.52 0.00 45.18 2.24
475 479 7.304497 ACTGAGACTTAACCAAGTGATAAGT 57.696 36.000 8.37 8.37 45.18 2.24
476 480 6.528423 CGACTGAGACTTAACCAAGTGATAAG 59.472 42.308 0.00 0.00 45.18 1.73
477 481 6.208007 TCGACTGAGACTTAACCAAGTGATAA 59.792 38.462 0.00 0.00 45.18 1.75
478 482 5.708697 TCGACTGAGACTTAACCAAGTGATA 59.291 40.000 0.00 0.00 45.18 2.15
479 483 4.523173 TCGACTGAGACTTAACCAAGTGAT 59.477 41.667 0.00 0.00 45.18 3.06
480 484 3.887110 TCGACTGAGACTTAACCAAGTGA 59.113 43.478 0.00 0.00 45.18 3.41
481 485 3.982058 GTCGACTGAGACTTAACCAAGTG 59.018 47.826 8.70 0.00 45.18 3.16
493 497 3.940221 GGCTAAGTCTTAGTCGACTGAGA 59.060 47.826 30.05 30.05 42.73 3.27
494 498 3.690139 TGGCTAAGTCTTAGTCGACTGAG 59.310 47.826 26.80 26.80 43.14 3.35
495 499 3.439476 GTGGCTAAGTCTTAGTCGACTGA 59.561 47.826 28.12 19.13 43.14 3.41
496 500 3.190744 TGTGGCTAAGTCTTAGTCGACTG 59.809 47.826 28.12 12.46 43.14 3.51
497 501 3.190953 GTGTGGCTAAGTCTTAGTCGACT 59.809 47.826 23.66 23.66 45.73 4.18
498 502 3.190953 AGTGTGGCTAAGTCTTAGTCGAC 59.809 47.826 17.32 15.63 40.70 4.20
499 503 3.418995 AGTGTGGCTAAGTCTTAGTCGA 58.581 45.455 17.32 5.84 40.70 4.20
500 504 3.440872 AGAGTGTGGCTAAGTCTTAGTCG 59.559 47.826 17.32 0.00 40.70 4.18
501 505 6.702716 ATAGAGTGTGGCTAAGTCTTAGTC 57.297 41.667 15.99 15.99 38.33 2.59
502 506 8.591114 TTAATAGAGTGTGGCTAAGTCTTAGT 57.409 34.615 18.72 0.38 35.66 2.24
503 507 9.871238 TTTTAATAGAGTGTGGCTAAGTCTTAG 57.129 33.333 14.35 14.35 36.32 2.18
504 508 9.649167 GTTTTAATAGAGTGTGGCTAAGTCTTA 57.351 33.333 3.26 0.00 0.00 2.10
505 509 8.376270 AGTTTTAATAGAGTGTGGCTAAGTCTT 58.624 33.333 3.26 0.00 0.00 3.01
506 510 7.908453 AGTTTTAATAGAGTGTGGCTAAGTCT 58.092 34.615 3.43 3.43 0.00 3.24
507 511 7.278203 GGAGTTTTAATAGAGTGTGGCTAAGTC 59.722 40.741 0.00 0.00 0.00 3.01
508 512 7.038231 AGGAGTTTTAATAGAGTGTGGCTAAGT 60.038 37.037 0.00 0.00 0.00 2.24
509 513 7.331791 AGGAGTTTTAATAGAGTGTGGCTAAG 58.668 38.462 0.00 0.00 0.00 2.18
510 514 7.253905 AGGAGTTTTAATAGAGTGTGGCTAA 57.746 36.000 0.00 0.00 0.00 3.09
511 515 6.405508 CGAGGAGTTTTAATAGAGTGTGGCTA 60.406 42.308 0.00 0.00 0.00 3.93
512 516 5.624738 CGAGGAGTTTTAATAGAGTGTGGCT 60.625 44.000 0.00 0.00 0.00 4.75
513 517 4.567159 CGAGGAGTTTTAATAGAGTGTGGC 59.433 45.833 0.00 0.00 0.00 5.01
514 518 5.721232 ACGAGGAGTTTTAATAGAGTGTGG 58.279 41.667 0.00 0.00 0.00 4.17
515 519 6.468319 CGTACGAGGAGTTTTAATAGAGTGTG 59.532 42.308 10.44 0.00 0.00 3.82
516 520 6.549952 CGTACGAGGAGTTTTAATAGAGTGT 58.450 40.000 10.44 0.00 0.00 3.55
517 521 5.454877 GCGTACGAGGAGTTTTAATAGAGTG 59.545 44.000 21.65 0.00 0.00 3.51
518 522 5.124457 TGCGTACGAGGAGTTTTAATAGAGT 59.876 40.000 21.65 0.00 0.00 3.24
519 523 5.575957 TGCGTACGAGGAGTTTTAATAGAG 58.424 41.667 21.65 0.00 0.00 2.43
520 524 5.565592 TGCGTACGAGGAGTTTTAATAGA 57.434 39.130 21.65 0.00 0.00 1.98
521 525 4.206609 GCTGCGTACGAGGAGTTTTAATAG 59.793 45.833 21.65 0.00 31.83 1.73
522 526 4.107622 GCTGCGTACGAGGAGTTTTAATA 58.892 43.478 21.65 0.00 31.83 0.98
523 527 2.928116 GCTGCGTACGAGGAGTTTTAAT 59.072 45.455 21.65 0.00 31.83 1.40
524 528 2.331194 GCTGCGTACGAGGAGTTTTAA 58.669 47.619 21.65 0.00 31.83 1.52
525 529 1.403249 GGCTGCGTACGAGGAGTTTTA 60.403 52.381 21.65 0.00 31.83 1.52
526 530 0.669625 GGCTGCGTACGAGGAGTTTT 60.670 55.000 21.65 0.00 31.83 2.43
534 538 2.882927 AAATAGATGGCTGCGTACGA 57.117 45.000 21.65 3.19 0.00 3.43
535 539 3.944422 AAAAATAGATGGCTGCGTACG 57.056 42.857 11.84 11.84 0.00 3.67
566 570 9.720667 TCAGAAATTTACATTAAATCAGCATCG 57.279 29.630 0.00 0.00 37.39 3.84
583 587 6.661304 AATGAGCAGGTTCTTCAGAAATTT 57.339 33.333 0.00 0.00 35.58 1.82
607 611 4.689612 ACTCAGAAGTTCCTTTGCAGTA 57.310 40.909 0.00 0.00 28.74 2.74
660 664 7.369434 TGGGGGTATCCAAGATGAATAAAAAT 58.631 34.615 0.00 0.00 37.22 1.82
671 675 0.548926 TGTGCTGGGGGTATCCAAGA 60.549 55.000 0.00 0.00 39.00 3.02
677 681 3.407967 CCCGTGTGCTGGGGGTAT 61.408 66.667 0.00 0.00 43.39 2.73
690 694 1.973281 CACATGCTTTGAGGCCCGT 60.973 57.895 0.00 0.00 0.00 5.28
691 695 0.676466 TACACATGCTTTGAGGCCCG 60.676 55.000 0.00 0.00 0.00 6.13
724 728 9.950496 ATCACATTTCATCTTTGAAGTACTACT 57.050 29.630 0.00 0.00 42.60 2.57
727 731 9.950496 AGTATCACATTTCATCTTTGAAGTACT 57.050 29.630 0.00 0.00 42.60 2.73
763 767 1.164411 CGCAACTGCACCAGGATAAA 58.836 50.000 2.12 0.00 42.21 1.40
766 770 1.968017 CACGCAACTGCACCAGGAT 60.968 57.895 2.12 0.00 42.21 3.24
768 772 2.591429 TCACGCAACTGCACCAGG 60.591 61.111 2.12 0.00 42.21 4.45
769 773 2.610694 CCTCACGCAACTGCACCAG 61.611 63.158 2.12 0.00 42.21 4.00
770 774 2.591429 CCTCACGCAACTGCACCA 60.591 61.111 2.12 0.00 42.21 4.17
771 775 4.030452 GCCTCACGCAACTGCACC 62.030 66.667 2.12 0.00 42.21 5.01
793 801 2.095008 GCTTTTGCTCTTTGCTAGTCCC 60.095 50.000 0.00 0.00 43.35 4.46
817 825 1.098129 GGAAAGGGAGATGCTTCGGC 61.098 60.000 0.00 0.00 42.19 5.54
820 828 1.946745 CGAGGAAAGGGAGATGCTTC 58.053 55.000 0.00 0.00 0.00 3.86
897 906 5.184864 TGTGCGGAAGAACCAATATCAAAAT 59.815 36.000 0.00 0.00 39.64 1.82
915 924 0.606401 AGGACACCAAGAATGTGCGG 60.606 55.000 0.00 0.00 42.68 5.69
940 949 4.742201 CGGTGTCGGTGAGGCAGG 62.742 72.222 0.00 0.00 33.59 4.85
984 993 4.148825 ATGCCGTCGGTCTGCTCC 62.149 66.667 13.94 0.00 0.00 4.70
1009 1018 3.436924 CAGCAGCGGCATCAGCAA 61.437 61.111 12.44 0.00 44.61 3.91
1313 1343 1.004918 CTGTGGGAAGGTGGTCGAC 60.005 63.158 7.13 7.13 0.00 4.20
1341 1392 5.012664 TGAATGAACATATATAGTGGCGGGT 59.987 40.000 0.00 0.00 0.00 5.28
1382 1433 8.948631 TGTATGAAGAACTATGAAGACATTCC 57.051 34.615 0.00 0.00 37.87 3.01
1390 1441 6.969043 ACCCCATTGTATGAAGAACTATGAA 58.031 36.000 0.00 0.00 33.62 2.57
1396 1447 5.112129 AGGTACCCCATTGTATGAAGAAC 57.888 43.478 8.74 0.00 0.00 3.01
1397 1448 5.628200 CGAAGGTACCCCATTGTATGAAGAA 60.628 44.000 8.74 0.00 0.00 2.52
1398 1449 4.141801 CGAAGGTACCCCATTGTATGAAGA 60.142 45.833 8.74 0.00 0.00 2.87
1399 1450 4.127171 CGAAGGTACCCCATTGTATGAAG 58.873 47.826 8.74 0.00 0.00 3.02
1404 1455 4.847990 AAATCGAAGGTACCCCATTGTA 57.152 40.909 8.74 0.00 0.00 2.41
1495 1546 4.480115 TGTAACTTCTCTCTGACAAGGGA 58.520 43.478 0.00 0.00 0.00 4.20
1496 1547 4.873746 TGTAACTTCTCTCTGACAAGGG 57.126 45.455 0.00 0.00 0.00 3.95
1645 2199 5.687166 AACGGAAAACTATGGGACTATCA 57.313 39.130 0.00 0.00 0.00 2.15
1657 2211 5.240844 CCTACTCATGGAAAAACGGAAAACT 59.759 40.000 0.00 0.00 0.00 2.66
1667 2221 6.215431 TCCTTCATCTTCCTACTCATGGAAAA 59.785 38.462 0.00 0.00 42.29 2.29
1757 2311 2.362077 GGTGAACAATGCTTGGTGTCTT 59.638 45.455 1.84 0.00 34.12 3.01
1826 2895 2.038952 TCACCACCTGTTCCTTCTCATG 59.961 50.000 0.00 0.00 0.00 3.07
1862 2931 7.751768 TGACATTATTGTTGTCACATTGGTA 57.248 32.000 2.56 0.00 46.31 3.25
1942 3044 2.347755 CACTCTCTGATCATTGTGCACG 59.652 50.000 13.13 0.00 0.00 5.34
1978 3080 5.426509 AGAGACACAGATCCATATGACCAAA 59.573 40.000 3.65 0.00 0.00 3.28
2073 3175 0.401356 TTGCAGTGCCTCCATCTCAA 59.599 50.000 13.72 0.00 0.00 3.02
2187 3289 4.529769 AGCCAGCATCTGAGCATAGTAATA 59.470 41.667 8.98 0.00 36.85 0.98
2366 3468 7.775120 ACAATGTTCCTAGCCATTAAAATCAG 58.225 34.615 1.65 0.00 30.41 2.90
2831 4001 9.165014 CTTTTGAAGAATTGTGCAATCATTTTG 57.835 29.630 0.00 0.00 0.00 2.44
2874 4048 3.544684 TCATGTGTGGATCCTTGCATAC 58.455 45.455 14.23 1.68 36.14 2.39
3148 4373 2.664402 ACAACATGGAAGTGGCTTCT 57.336 45.000 8.52 0.00 40.07 2.85
3315 4540 5.889853 ACATAATTGGTCAATGTCTGCAGAT 59.110 36.000 21.47 0.83 0.00 2.90
3356 4581 4.713824 TTAGTTGATCGATTCCACGACT 57.286 40.909 0.00 4.69 44.84 4.18
3397 4622 2.094338 CAGCCCAATCAAAGAAAGAGCC 60.094 50.000 0.00 0.00 0.00 4.70
3414 4639 0.039708 GCTGTGCACTTTTCTCAGCC 60.040 55.000 19.41 0.00 42.14 4.85
3454 4679 9.669887 TTCAAATTATGCTTGGCAGAAATATTT 57.330 25.926 0.00 0.00 42.91 1.40
3460 4685 6.465948 ACATTTCAAATTATGCTTGGCAGAA 58.534 32.000 2.16 2.16 43.78 3.02
3617 4866 6.745116 AGTCATGCATCCACAATGATAATTG 58.255 36.000 0.00 0.77 37.59 2.32
3645 4894 7.526142 AGTTCACTGAGATGTTCTAACAGTA 57.474 36.000 0.00 0.00 43.04 2.74
3692 4941 5.638133 CCATAATGGTGGAAGATCCTTGAT 58.362 41.667 0.00 0.00 42.02 2.57
4005 5260 1.075536 AGGGGATCTTTGTTGTCCACC 59.924 52.381 0.00 0.00 36.03 4.61
4008 5264 4.219944 GGTAAAAGGGGATCTTTGTTGTCC 59.780 45.833 0.00 0.00 44.30 4.02
4010 5275 4.587262 GTGGTAAAAGGGGATCTTTGTTGT 59.413 41.667 0.00 0.00 44.30 3.32
4035 5309 3.125658 TGATTGCACACACTGATTCATCG 59.874 43.478 0.00 0.00 0.00 3.84
4109 5404 3.318313 ACCTCGATAAATGGATGTCCCT 58.682 45.455 0.00 0.00 35.38 4.20
4175 5470 2.161808 CCTCTTCAAAGTGCTCTGCATG 59.838 50.000 0.00 0.00 41.91 4.06
4417 5718 2.074576 GGAAGTGAGCCCGTTAAGTTC 58.925 52.381 0.00 0.00 0.00 3.01
4483 5787 3.287312 TCACAGCTTACAATTGCAAGC 57.713 42.857 28.62 28.62 46.03 4.01
4533 5837 5.122869 GCTATGTGCAATTCTTCAAGAGACA 59.877 40.000 0.00 0.00 42.31 3.41
4630 5934 3.414700 GTCAGGGCGTCGCACTTG 61.415 66.667 21.79 15.42 40.61 3.16
4790 6094 0.392327 GCCAAGGCTCTCTCCAAGTC 60.392 60.000 3.29 0.00 38.26 3.01
4807 6111 1.760268 CTCTTGAGAATGCGCTCGCC 61.760 60.000 9.73 0.00 41.09 5.54
4812 6116 0.176680 TCCTCCTCTTGAGAATGCGC 59.823 55.000 0.00 0.00 44.42 6.09
4813 6117 1.805871 GCTCCTCCTCTTGAGAATGCG 60.806 57.143 0.00 0.00 44.42 4.73
4858 6162 5.176406 CGTTGTTGATATGCCTCTATGTGAG 59.824 44.000 0.00 0.00 42.30 3.51
4882 6186 3.053455 CTCGAGCCGAATTCCATTAGAC 58.947 50.000 0.00 0.00 34.74 2.59
4886 6190 0.107703 TGCTCGAGCCGAATTCCATT 60.108 50.000 33.23 0.00 41.18 3.16
4892 6196 1.021390 CCACTTTGCTCGAGCCGAAT 61.021 55.000 33.23 14.72 41.18 3.34
4928 6232 3.728474 GATGGCCTCATCAGCGTG 58.272 61.111 3.32 0.00 46.74 5.34
4946 6250 0.995675 AGGCATCTAGGGCATGGGTT 60.996 55.000 9.10 0.00 35.46 4.11
4958 6265 0.171903 GCGCATTCACAAAGGCATCT 59.828 50.000 0.30 0.00 42.19 2.90
4988 6295 1.545651 GGTACAGAAAAGGCAGGCTGT 60.546 52.381 17.16 0.00 43.40 4.40
4990 6297 0.038310 GGGTACAGAAAAGGCAGGCT 59.962 55.000 0.00 0.00 0.00 4.58
5026 6333 4.556898 CGACTAGGCAGATTATACGTTGCT 60.557 45.833 7.51 0.00 36.79 3.91
5027 6334 3.669122 CGACTAGGCAGATTATACGTTGC 59.331 47.826 0.00 0.00 35.87 4.17
5028 6335 4.675565 CACGACTAGGCAGATTATACGTTG 59.324 45.833 0.00 0.00 0.00 4.10
5029 6336 4.577693 TCACGACTAGGCAGATTATACGTT 59.422 41.667 0.00 0.00 0.00 3.99
5031 6338 4.024302 TGTCACGACTAGGCAGATTATACG 60.024 45.833 0.00 0.00 0.00 3.06
5032 6339 5.434352 TGTCACGACTAGGCAGATTATAC 57.566 43.478 0.00 0.00 0.00 1.47
5033 6340 4.519350 CCTGTCACGACTAGGCAGATTATA 59.481 45.833 0.00 0.00 0.00 0.98
5034 6341 3.319405 CCTGTCACGACTAGGCAGATTAT 59.681 47.826 0.00 0.00 0.00 1.28
5036 6343 1.478510 CCTGTCACGACTAGGCAGATT 59.521 52.381 0.00 0.00 0.00 2.40
5037 6344 1.107114 CCTGTCACGACTAGGCAGAT 58.893 55.000 0.00 0.00 0.00 2.90
5038 6345 0.251209 ACCTGTCACGACTAGGCAGA 60.251 55.000 12.68 0.00 34.86 4.26
5039 6346 0.603569 AACCTGTCACGACTAGGCAG 59.396 55.000 12.68 0.00 34.86 4.85
5041 6348 0.601558 TCAACCTGTCACGACTAGGC 59.398 55.000 12.68 0.00 34.86 3.93
5042 6349 2.557056 TCTTCAACCTGTCACGACTAGG 59.443 50.000 11.69 11.69 36.41 3.02
5043 6350 3.253677 AGTCTTCAACCTGTCACGACTAG 59.746 47.826 0.00 0.00 0.00 2.57
5044 6351 3.220110 AGTCTTCAACCTGTCACGACTA 58.780 45.455 0.00 0.00 0.00 2.59
5045 6352 2.032620 AGTCTTCAACCTGTCACGACT 58.967 47.619 0.00 0.00 0.00 4.18
5046 6353 2.510768 AGTCTTCAACCTGTCACGAC 57.489 50.000 0.00 0.00 0.00 4.34
5048 6355 1.261619 GCAAGTCTTCAACCTGTCACG 59.738 52.381 0.00 0.00 0.00 4.35
5050 6357 1.581934 CGCAAGTCTTCAACCTGTCA 58.418 50.000 0.00 0.00 0.00 3.58
5065 6372 0.035739 GGACTACCCTTGGAACGCAA 59.964 55.000 0.00 0.00 0.00 4.85
5067 6374 1.447314 CGGACTACCCTTGGAACGC 60.447 63.158 0.00 0.00 0.00 4.84
5068 6375 1.217244 CCGGACTACCCTTGGAACG 59.783 63.158 0.00 0.00 0.00 3.95
5069 6376 1.078637 GCCGGACTACCCTTGGAAC 60.079 63.158 5.05 0.00 0.00 3.62
5070 6377 2.652095 CGCCGGACTACCCTTGGAA 61.652 63.158 5.05 0.00 0.00 3.53
5072 6379 2.012902 CTACGCCGGACTACCCTTGG 62.013 65.000 5.05 0.00 0.00 3.61
5073 6380 1.033746 TCTACGCCGGACTACCCTTG 61.034 60.000 5.05 0.00 0.00 3.61
5074 6381 0.106318 ATCTACGCCGGACTACCCTT 60.106 55.000 5.05 0.00 0.00 3.95
5075 6382 0.767375 TATCTACGCCGGACTACCCT 59.233 55.000 5.05 0.00 0.00 4.34
5076 6383 1.163554 CTATCTACGCCGGACTACCC 58.836 60.000 5.05 0.00 0.00 3.69
5077 6384 1.163554 CCTATCTACGCCGGACTACC 58.836 60.000 5.05 0.00 0.00 3.18
5078 6385 0.520847 GCCTATCTACGCCGGACTAC 59.479 60.000 5.05 0.00 0.00 2.73
5079 6386 0.607489 GGCCTATCTACGCCGGACTA 60.607 60.000 5.05 0.00 34.94 2.59
5081 6388 2.649614 GGCCTATCTACGCCGGAC 59.350 66.667 5.05 0.00 34.94 4.79
5086 6393 0.464452 ACAACCTGGCCTATCTACGC 59.536 55.000 3.32 0.00 0.00 4.42
5087 6394 2.981859 AACAACCTGGCCTATCTACG 57.018 50.000 3.32 0.00 0.00 3.51
5088 6395 3.134081 TGCTAACAACCTGGCCTATCTAC 59.866 47.826 3.32 0.00 0.00 2.59
5091 6398 2.710096 TGCTAACAACCTGGCCTATC 57.290 50.000 3.32 0.00 0.00 2.08
5092 6399 5.548056 ACTATATGCTAACAACCTGGCCTAT 59.452 40.000 3.32 0.00 0.00 2.57
5094 6401 3.716872 ACTATATGCTAACAACCTGGCCT 59.283 43.478 3.32 0.00 0.00 5.19
5095 6402 4.086706 ACTATATGCTAACAACCTGGCC 57.913 45.455 0.00 0.00 0.00 5.36
5096 6403 7.661847 AGATAAACTATATGCTAACAACCTGGC 59.338 37.037 0.00 0.00 0.00 4.85
5097 6404 9.561069 AAGATAAACTATATGCTAACAACCTGG 57.439 33.333 0.00 0.00 0.00 4.45
5131 6438 9.351572 AGGGATAAGAAGATAGAGAGATAGAGT 57.648 37.037 0.00 0.00 0.00 3.24
5134 6441 9.753674 ACAAGGGATAAGAAGATAGAGAGATAG 57.246 37.037 0.00 0.00 0.00 2.08
5137 6444 7.945664 GGTACAAGGGATAAGAAGATAGAGAGA 59.054 40.741 0.00 0.00 0.00 3.10
5139 6446 7.506261 GTGGTACAAGGGATAAGAAGATAGAGA 59.494 40.741 0.00 0.00 44.16 3.10
5141 6448 7.130099 TGTGGTACAAGGGATAAGAAGATAGA 58.870 38.462 0.00 0.00 44.16 1.98
5142 6449 7.361457 TGTGGTACAAGGGATAAGAAGATAG 57.639 40.000 0.00 0.00 44.16 2.08
5143 6450 7.743116 TTGTGGTACAAGGGATAAGAAGATA 57.257 36.000 0.00 0.00 44.16 1.98
5144 6451 6.636454 TTGTGGTACAAGGGATAAGAAGAT 57.364 37.500 0.00 0.00 44.16 2.40
5157 6464 8.967664 AGTTAAGATTACAACTTGTGGTACAA 57.032 30.769 4.57 0.00 33.07 2.41
5167 6474 7.475015 TCGCGTACATAGTTAAGATTACAACT 58.525 34.615 5.77 0.00 38.50 3.16
5168 6475 7.669438 TCGCGTACATAGTTAAGATTACAAC 57.331 36.000 5.77 0.00 0.00 3.32
5169 6476 7.592533 GGATCGCGTACATAGTTAAGATTACAA 59.407 37.037 5.77 0.00 0.00 2.41
5170 6477 7.080099 GGATCGCGTACATAGTTAAGATTACA 58.920 38.462 5.77 0.00 0.00 2.41
5171 6478 6.248001 CGGATCGCGTACATAGTTAAGATTAC 59.752 42.308 5.77 0.00 0.00 1.89
5174 6481 4.379186 CCGGATCGCGTACATAGTTAAGAT 60.379 45.833 5.77 0.00 0.00 2.40
5175 6482 3.058708 CCGGATCGCGTACATAGTTAAGA 60.059 47.826 5.77 0.00 0.00 2.10
5176 6483 3.231965 CCGGATCGCGTACATAGTTAAG 58.768 50.000 5.77 0.00 0.00 1.85
5177 6484 2.618241 ACCGGATCGCGTACATAGTTAA 59.382 45.455 9.46 0.00 0.00 2.01
5178 6485 2.031769 CACCGGATCGCGTACATAGTTA 60.032 50.000 9.46 0.00 0.00 2.24
5180 6487 0.309922 CACCGGATCGCGTACATAGT 59.690 55.000 9.46 0.00 0.00 2.12
5181 6488 0.589708 TCACCGGATCGCGTACATAG 59.410 55.000 9.46 0.00 0.00 2.23
5182 6489 0.589708 CTCACCGGATCGCGTACATA 59.410 55.000 9.46 0.00 0.00 2.29
5183 6490 1.359117 CTCACCGGATCGCGTACAT 59.641 57.895 9.46 0.00 0.00 2.29
5186 6493 1.138036 CAACTCACCGGATCGCGTA 59.862 57.895 9.46 0.00 0.00 4.42
5188 6495 3.554692 GCAACTCACCGGATCGCG 61.555 66.667 9.46 0.00 0.00 5.87
5189 6496 3.554692 CGCAACTCACCGGATCGC 61.555 66.667 9.46 0.19 0.00 4.58
5191 6498 3.195698 GGCGCAACTCACCGGATC 61.196 66.667 9.46 0.00 0.00 3.36
5192 6499 4.778143 GGGCGCAACTCACCGGAT 62.778 66.667 9.46 0.00 0.00 4.18
5196 6503 2.536997 ATACTGGGGCGCAACTCACC 62.537 60.000 10.83 0.00 0.00 4.02
5197 6504 0.177141 TATACTGGGGCGCAACTCAC 59.823 55.000 10.83 0.00 0.00 3.51
5198 6505 1.128200 ATATACTGGGGCGCAACTCA 58.872 50.000 10.83 0.00 0.00 3.41
5200 6507 3.118186 TGTTAATATACTGGGGCGCAACT 60.118 43.478 10.83 0.00 0.00 3.16
5201 6508 3.002965 GTGTTAATATACTGGGGCGCAAC 59.997 47.826 10.83 0.62 0.00 4.17
5202 6509 3.207778 GTGTTAATATACTGGGGCGCAA 58.792 45.455 10.83 0.00 0.00 4.85
5203 6510 2.803852 CGTGTTAATATACTGGGGCGCA 60.804 50.000 10.83 3.57 0.00 6.09
5204 6511 1.796459 CGTGTTAATATACTGGGGCGC 59.204 52.381 0.00 0.00 0.00 6.53
5205 6512 3.374220 TCGTGTTAATATACTGGGGCG 57.626 47.619 0.00 0.00 0.00 6.13
5206 6513 3.497262 GCTTCGTGTTAATATACTGGGGC 59.503 47.826 0.00 0.00 0.00 5.80
5207 6514 4.062991 GGCTTCGTGTTAATATACTGGGG 58.937 47.826 0.00 0.00 0.00 4.96
5208 6515 3.739300 CGGCTTCGTGTTAATATACTGGG 59.261 47.826 0.00 0.00 0.00 4.45
5229 6536 0.458025 GTACCTTTCTCTGGCCGACG 60.458 60.000 0.00 0.00 0.00 5.12
5230 6537 0.458025 CGTACCTTTCTCTGGCCGAC 60.458 60.000 0.00 0.00 0.00 4.79
5231 6538 0.609957 TCGTACCTTTCTCTGGCCGA 60.610 55.000 0.00 0.00 0.00 5.54
5232 6539 0.460311 ATCGTACCTTTCTCTGGCCG 59.540 55.000 0.00 0.00 0.00 6.13
5233 6540 1.207329 ACATCGTACCTTTCTCTGGCC 59.793 52.381 0.00 0.00 0.00 5.36
5234 6541 2.674796 ACATCGTACCTTTCTCTGGC 57.325 50.000 0.00 0.00 0.00 4.85
5235 6542 5.347907 GTGTTAACATCGTACCTTTCTCTGG 59.652 44.000 12.26 0.00 0.00 3.86
5236 6543 5.924254 TGTGTTAACATCGTACCTTTCTCTG 59.076 40.000 12.26 0.00 0.00 3.35
5237 6544 6.092955 TGTGTTAACATCGTACCTTTCTCT 57.907 37.500 12.26 0.00 0.00 3.10
5238 6545 6.423001 ACTTGTGTTAACATCGTACCTTTCTC 59.577 38.462 12.26 0.00 35.83 2.87
5239 6546 6.285990 ACTTGTGTTAACATCGTACCTTTCT 58.714 36.000 12.26 0.00 35.83 2.52
5240 6547 6.535274 ACTTGTGTTAACATCGTACCTTTC 57.465 37.500 12.26 0.00 35.83 2.62
5241 6548 6.930667 AACTTGTGTTAACATCGTACCTTT 57.069 33.333 12.26 0.00 35.83 3.11
5244 6551 6.630045 GTGAAAACTTGTGTTAACATCGTACC 59.370 38.462 12.26 0.00 35.83 3.34
5245 6552 7.181418 TGTGAAAACTTGTGTTAACATCGTAC 58.819 34.615 12.26 0.00 35.83 3.67
5246 6553 7.304919 TGTGAAAACTTGTGTTAACATCGTA 57.695 32.000 12.26 0.00 35.83 3.43
5248 6555 6.344936 GCATGTGAAAACTTGTGTTAACATCG 60.345 38.462 12.26 5.94 35.01 3.84
5250 6557 6.572519 AGCATGTGAAAACTTGTGTTAACAT 58.427 32.000 12.26 1.70 36.32 2.71
5251 6558 5.960113 AGCATGTGAAAACTTGTGTTAACA 58.040 33.333 3.59 3.59 34.96 2.41
5252 6559 6.265577 AGAGCATGTGAAAACTTGTGTTAAC 58.734 36.000 0.00 0.00 34.96 2.01
5253 6560 6.449635 AGAGCATGTGAAAACTTGTGTTAA 57.550 33.333 0.00 0.00 34.96 2.01
5254 6561 6.989759 TCTAGAGCATGTGAAAACTTGTGTTA 59.010 34.615 0.00 0.00 34.96 2.41
5255 6562 4.989279 AGAGCATGTGAAAACTTGTGTT 57.011 36.364 0.00 0.00 38.16 3.32
5256 6563 5.368145 TCTAGAGCATGTGAAAACTTGTGT 58.632 37.500 0.00 0.00 0.00 3.72
5259 6566 7.137490 TGAATCTAGAGCATGTGAAAACTTG 57.863 36.000 0.00 0.00 0.00 3.16
5260 6567 7.229306 TGTTGAATCTAGAGCATGTGAAAACTT 59.771 33.333 0.00 0.00 0.00 2.66
5261 6568 6.712095 TGTTGAATCTAGAGCATGTGAAAACT 59.288 34.615 0.00 0.00 0.00 2.66
5262 6569 6.798959 GTGTTGAATCTAGAGCATGTGAAAAC 59.201 38.462 0.00 0.00 0.00 2.43
5263 6570 6.712095 AGTGTTGAATCTAGAGCATGTGAAAA 59.288 34.615 0.00 0.00 0.00 2.29
5265 6572 5.798132 AGTGTTGAATCTAGAGCATGTGAA 58.202 37.500 0.00 0.00 0.00 3.18
5266 6573 5.411831 AGTGTTGAATCTAGAGCATGTGA 57.588 39.130 0.00 0.00 0.00 3.58
5267 6574 5.410746 ACAAGTGTTGAATCTAGAGCATGTG 59.589 40.000 0.00 0.00 0.00 3.21
5302 6649 5.645929 AGATAGATACAGCTATGACTGACCG 59.354 44.000 4.02 0.00 40.25 4.79
5316 6663 7.935210 TCTTCCGTACATACACAGATAGATACA 59.065 37.037 0.00 0.00 0.00 2.29
5332 6679 4.390603 GCACATACATTGTTCTTCCGTACA 59.609 41.667 0.00 0.00 36.00 2.90
5335 6685 3.188460 GTGCACATACATTGTTCTTCCGT 59.812 43.478 13.17 0.00 36.00 4.69
5350 6700 5.431420 TTCAACAGATAAAACGTGCACAT 57.569 34.783 18.64 0.00 0.00 3.21
5362 6712 2.670905 CGACGGTGCATTTCAACAGATA 59.329 45.455 0.00 0.00 31.06 1.98
5363 6713 1.464608 CGACGGTGCATTTCAACAGAT 59.535 47.619 0.00 0.00 31.06 2.90
5364 6714 0.865111 CGACGGTGCATTTCAACAGA 59.135 50.000 0.00 0.00 31.06 3.41
5365 6715 0.725784 GCGACGGTGCATTTCAACAG 60.726 55.000 0.00 0.00 31.06 3.16
5366 6716 1.163420 AGCGACGGTGCATTTCAACA 61.163 50.000 0.00 0.00 37.31 3.33
5367 6717 0.040425 AAGCGACGGTGCATTTCAAC 60.040 50.000 0.00 0.00 37.31 3.18
5383 6737 2.935740 GCTGGGGCCAAGAACAAGC 61.936 63.158 13.61 0.00 0.00 4.01
5392 6746 2.918802 CTGCAAAAGCTGGGGCCA 60.919 61.111 4.39 0.00 39.73 5.36
5474 6828 2.029623 GAGCCAAGAACATGGATGCAT 58.970 47.619 0.00 0.00 39.71 3.96
5489 6843 3.075005 GTCAGCCGGTAGGAGCCA 61.075 66.667 1.90 0.00 41.02 4.75
5494 6848 2.722201 GGAGTGGTCAGCCGGTAGG 61.722 68.421 1.90 0.00 41.62 3.18
5501 6855 2.740055 CTGCGTGGAGTGGTCAGC 60.740 66.667 0.00 0.00 0.00 4.26
5540 6894 3.160047 AGATCCTCCCGCCAGCAG 61.160 66.667 0.00 0.00 0.00 4.24
5550 6904 2.123251 TGGGGGAGCGAGATCCTC 60.123 66.667 7.36 2.68 39.34 3.71
5563 6919 1.003718 GTGGTTCGGTTCTCTGGGG 60.004 63.158 0.00 0.00 0.00 4.96
5567 6923 1.300697 GCGTGTGGTTCGGTTCTCT 60.301 57.895 0.00 0.00 0.00 3.10
5569 6925 2.660552 CGCGTGTGGTTCGGTTCT 60.661 61.111 0.00 0.00 0.00 3.01
5611 6970 2.126228 TCCGTCCGCGTGAATGAC 60.126 61.111 4.92 3.64 36.15 3.06
5654 7017 1.144093 TGGTACTTTGGGTCACTTGGG 59.856 52.381 0.00 0.00 0.00 4.12
5673 7036 3.118454 CCACGTGCTACGGGCTTG 61.118 66.667 10.91 2.97 45.07 4.01
5689 7052 2.125512 ACAAGCCAGATCGCGACC 60.126 61.111 12.93 0.00 0.00 4.79
5712 7075 3.069586 TGATATGCCTACTGTACACCTGC 59.930 47.826 0.00 0.00 0.00 4.85
5730 7093 3.198068 GTCGCCTCTGATTGCTTTGATA 58.802 45.455 0.00 0.00 0.00 2.15
5776 7139 0.040692 GAAAACCGTTGGCGTCCTTC 60.041 55.000 0.00 0.00 36.15 3.46
5795 7158 2.504175 TCGGAGGGAGTAGAATTTTGGG 59.496 50.000 0.00 0.00 0.00 4.12
5798 7161 4.443034 CGGAATCGGAGGGAGTAGAATTTT 60.443 45.833 0.00 0.00 0.00 1.82
5799 7162 3.069729 CGGAATCGGAGGGAGTAGAATTT 59.930 47.826 0.00 0.00 0.00 1.82
5800 7163 2.628657 CGGAATCGGAGGGAGTAGAATT 59.371 50.000 0.00 0.00 0.00 2.17
5801 7164 2.158505 TCGGAATCGGAGGGAGTAGAAT 60.159 50.000 0.00 0.00 36.95 2.40
5802 7165 1.213678 TCGGAATCGGAGGGAGTAGAA 59.786 52.381 0.00 0.00 36.95 2.10
5803 7166 0.841961 TCGGAATCGGAGGGAGTAGA 59.158 55.000 0.00 0.00 36.95 2.59
5804 7167 1.813786 GATCGGAATCGGAGGGAGTAG 59.186 57.143 0.00 0.00 36.95 2.57
5805 7168 1.547223 GGATCGGAATCGGAGGGAGTA 60.547 57.143 0.00 0.00 36.95 2.59
5806 7169 0.828343 GGATCGGAATCGGAGGGAGT 60.828 60.000 0.00 0.00 36.95 3.85
5807 7170 1.536943 GGGATCGGAATCGGAGGGAG 61.537 65.000 0.00 0.00 36.95 4.30
5808 7171 1.533273 GGGATCGGAATCGGAGGGA 60.533 63.158 0.00 0.00 36.95 4.20
5809 7172 1.194781 ATGGGATCGGAATCGGAGGG 61.195 60.000 0.00 0.00 36.95 4.30
5810 7173 1.557099 TATGGGATCGGAATCGGAGG 58.443 55.000 0.00 0.00 36.95 4.30
5811 7174 3.055819 ACATTATGGGATCGGAATCGGAG 60.056 47.826 0.00 0.00 36.95 4.63
5812 7175 2.903784 ACATTATGGGATCGGAATCGGA 59.096 45.455 0.00 0.00 36.95 4.55
5813 7176 3.262420 GACATTATGGGATCGGAATCGG 58.738 50.000 0.00 0.00 36.95 4.18
5814 7177 3.262420 GGACATTATGGGATCGGAATCG 58.738 50.000 0.00 0.00 32.24 3.34
5815 7178 3.262420 CGGACATTATGGGATCGGAATC 58.738 50.000 0.00 0.00 0.00 2.52
5816 7179 2.615493 GCGGACATTATGGGATCGGAAT 60.615 50.000 0.00 0.00 0.00 3.01
5817 7180 1.270625 GCGGACATTATGGGATCGGAA 60.271 52.381 0.00 0.00 0.00 4.30
5818 7181 0.320374 GCGGACATTATGGGATCGGA 59.680 55.000 0.00 0.00 0.00 4.55
5819 7182 0.673644 GGCGGACATTATGGGATCGG 60.674 60.000 0.00 0.00 0.00 4.18
5820 7183 0.673644 GGGCGGACATTATGGGATCG 60.674 60.000 0.00 0.00 0.00 3.69
5821 7184 0.400213 TGGGCGGACATTATGGGATC 59.600 55.000 0.00 0.00 0.00 3.36
5822 7185 0.401738 CTGGGCGGACATTATGGGAT 59.598 55.000 0.00 0.00 0.00 3.85
5823 7186 0.692756 TCTGGGCGGACATTATGGGA 60.693 55.000 0.00 0.00 0.00 4.37
5824 7187 0.182537 TTCTGGGCGGACATTATGGG 59.817 55.000 0.00 0.00 0.00 4.00
5825 7188 2.051334 TTTCTGGGCGGACATTATGG 57.949 50.000 0.00 0.00 0.00 2.74
5826 7189 2.223249 CGTTTTCTGGGCGGACATTATG 60.223 50.000 0.00 0.00 0.00 1.90
5827 7190 2.014128 CGTTTTCTGGGCGGACATTAT 58.986 47.619 0.00 0.00 0.00 1.28
5828 7191 1.270947 ACGTTTTCTGGGCGGACATTA 60.271 47.619 0.00 0.00 0.00 1.90
5851 7214 6.776116 TCTCATATTTCTTTAGCCTCCGTCTA 59.224 38.462 0.00 0.00 0.00 2.59
5879 7293 7.434492 CATCGGTAGTAGTTGGTGATCTAAAT 58.566 38.462 0.00 0.00 0.00 1.40
5903 7317 3.233507 ACTTTTACTGGACCGTACTCCA 58.766 45.455 3.97 3.97 38.05 3.86
5906 7320 4.677673 ACAACTTTTACTGGACCGTACT 57.322 40.909 0.00 0.00 0.00 2.73
5911 7325 4.553351 GCGTTGTACAACTTTTACTGGACC 60.553 45.833 30.47 5.69 39.08 4.46
5949 7363 5.978919 TGATCAATGTTTTCAAGCACAGTTC 59.021 36.000 0.00 0.00 0.00 3.01
5969 7384 3.303461 CGACTCTGGAGTATCGTGTGATC 60.303 52.174 3.03 0.00 42.66 2.92
5982 7397 1.389555 ATACGCATGTCGACTCTGGA 58.610 50.000 17.92 0.94 41.67 3.86
5983 7398 2.350868 CCTATACGCATGTCGACTCTGG 60.351 54.545 17.92 10.37 41.67 3.86
5990 7409 2.030274 TGGATGACCTATACGCATGTCG 60.030 50.000 7.79 7.79 39.64 4.35
6004 7423 3.942829 TGGTGTCTGAATTCTGGATGAC 58.057 45.455 11.89 9.71 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.