Multiple sequence alignment - TraesCS7B01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G339000 chr7B 100.000 4968 0 0 1 4968 593351586 593346619 0.000000e+00 9175.0
1 TraesCS7B01G339000 chr7B 97.491 279 6 1 1 278 464820594 464820316 4.500000e-130 475.0
2 TraesCS7B01G339000 chr7B 94.382 89 5 0 274 362 593293585 593293497 2.410000e-28 137.0
3 TraesCS7B01G339000 chr5A 95.660 3341 118 13 1653 4968 470929519 470932857 0.000000e+00 5341.0
4 TraesCS7B01G339000 chr5A 94.454 613 21 4 386 997 470927699 470928299 0.000000e+00 931.0
5 TraesCS7B01G339000 chr5A 86.854 639 58 15 4335 4968 13087465 13086848 0.000000e+00 691.0
6 TraesCS7B01G339000 chr5A 89.831 295 27 3 363 654 707254303 707254597 4.700000e-100 375.0
7 TraesCS7B01G339000 chr5A 97.959 49 1 0 1147 1195 470928814 470928862 8.860000e-13 86.1
8 TraesCS7B01G339000 chr3A 95.269 3340 131 14 1653 4967 662599324 662595987 0.000000e+00 5267.0
9 TraesCS7B01G339000 chr3A 97.959 49 1 0 1147 1195 662600029 662599981 8.860000e-13 86.1
10 TraesCS7B01G339000 chr2B 96.173 2665 96 5 1969 4629 100102842 100100180 0.000000e+00 4351.0
11 TraesCS7B01G339000 chr2B 94.952 2199 96 6 2784 4968 392005734 392007931 0.000000e+00 3432.0
12 TraesCS7B01G339000 chr2B 87.284 637 59 13 4335 4968 788174518 788175135 0.000000e+00 708.0
13 TraesCS7B01G339000 chr4A 96.719 2103 64 4 1653 3752 742010072 742007972 0.000000e+00 3496.0
14 TraesCS7B01G339000 chr4A 94.809 366 18 1 668 1032 742011025 742010660 2.010000e-158 569.0
15 TraesCS7B01G339000 chr4A 90.759 303 26 2 2784 3085 658381229 658381530 2.150000e-108 403.0
16 TraesCS7B01G339000 chr5D 96.751 1939 58 4 854 2788 127940479 127938542 0.000000e+00 3227.0
17 TraesCS7B01G339000 chr5D 88.226 637 53 9 4335 4968 127938397 127937780 0.000000e+00 741.0
18 TraesCS7B01G339000 chr5D 92.600 500 25 3 357 854 127941024 127940535 0.000000e+00 708.0
19 TraesCS7B01G339000 chr5D 85.930 199 14 6 667 854 14029217 14029412 3.030000e-47 200.0
20 TraesCS7B01G339000 chr7D 96.539 1936 65 2 854 2788 340173158 340175092 0.000000e+00 3203.0
21 TraesCS7B01G339000 chr7D 96.397 1943 62 5 854 2788 530741423 530739481 0.000000e+00 3193.0
22 TraesCS7B01G339000 chr7D 83.923 1611 138 56 3428 4968 449503384 449501825 0.000000e+00 1428.0
23 TraesCS7B01G339000 chr7D 81.720 1023 95 44 3987 4968 621798050 621799021 0.000000e+00 769.0
24 TraesCS7B01G339000 chr7D 90.893 549 43 5 3428 3973 621797465 621798009 0.000000e+00 730.0
25 TraesCS7B01G339000 chr7D 87.755 637 56 12 4335 4968 340175237 340175854 0.000000e+00 725.0
26 TraesCS7B01G339000 chr7D 93.306 493 22 2 363 854 340172620 340173102 0.000000e+00 717.0
27 TraesCS7B01G339000 chr7D 97.826 276 6 0 1 276 394184213 394184488 1.250000e-130 477.0
28 TraesCS7B01G339000 chr7D 87.302 126 16 0 4335 4460 530739336 530739211 1.440000e-30 145.0
29 TraesCS7B01G339000 chr1D 96.741 1749 55 2 1041 2788 415596273 415598020 0.000000e+00 2913.0
30 TraesCS7B01G339000 chr1D 94.366 497 24 1 362 854 415595240 415595736 0.000000e+00 760.0
31 TraesCS7B01G339000 chr1D 87.598 637 57 12 4335 4968 415598165 415598782 0.000000e+00 719.0
32 TraesCS7B01G339000 chr1D 90.508 295 25 3 363 654 62893011 62893305 2.170000e-103 387.0
33 TraesCS7B01G339000 chr1D 87.437 199 11 6 667 854 62893261 62893456 3.010000e-52 217.0
34 TraesCS7B01G339000 chr6D 96.928 1725 51 2 1065 2788 450189601 450187878 0.000000e+00 2891.0
35 TraesCS7B01G339000 chr6D 87.598 637 57 12 4335 4968 450187733 450187116 0.000000e+00 719.0
36 TraesCS7B01G339000 chr6D 93.306 493 23 1 362 854 450190306 450189824 0.000000e+00 719.0
37 TraesCS7B01G339000 chr6D 89.735 302 27 4 356 654 13475056 13475356 2.810000e-102 383.0
38 TraesCS7B01G339000 chr6D 86.478 318 26 5 2784 3085 440673135 440673451 2.870000e-87 333.0
39 TraesCS7B01G339000 chr6D 95.758 165 7 0 854 1018 450189768 450189604 2.950000e-67 267.0
40 TraesCS7B01G339000 chr6D 86.935 199 12 6 667 854 13475312 13475507 1.400000e-50 211.0
41 TraesCS7B01G339000 chr3B 90.893 1680 122 17 855 2521 775659965 775658304 0.000000e+00 2226.0
42 TraesCS7B01G339000 chr3B 96.479 284 8 1 1 284 755010893 755010612 7.530000e-128 468.0
43 TraesCS7B01G339000 chr3D 83.624 1606 149 52 3428 4968 583596426 583597982 0.000000e+00 1404.0
44 TraesCS7B01G339000 chr7A 88.668 653 54 8 3339 3973 41464488 41463838 0.000000e+00 778.0
45 TraesCS7B01G339000 chr7A 88.668 653 54 8 3339 3973 617598790 617599440 0.000000e+00 778.0
46 TraesCS7B01G339000 chr7A 91.497 294 21 4 3040 3332 617598416 617598706 7.750000e-108 401.0
47 TraesCS7B01G339000 chr7A 77.530 494 42 22 3988 4432 617599482 617599955 2.990000e-57 233.0
48 TraesCS7B01G339000 chr7A 76.971 482 46 27 3988 4432 41463796 41463343 1.080000e-51 215.0
49 TraesCS7B01G339000 chr2A 88.668 653 54 8 3339 3973 756524757 756525407 0.000000e+00 778.0
50 TraesCS7B01G339000 chr2A 91.837 294 20 4 3040 3332 756524383 756524673 1.660000e-109 407.0
51 TraesCS7B01G339000 chr2A 76.721 494 46 22 3988 4432 756525449 756525922 1.400000e-50 211.0
52 TraesCS7B01G339000 chrUn 87.874 635 57 10 4336 4968 314368641 314369257 0.000000e+00 728.0
53 TraesCS7B01G339000 chr1B 87.396 603 57 13 857 1453 289692839 289693428 0.000000e+00 675.0
54 TraesCS7B01G339000 chr1B 87.862 552 47 13 2784 3332 675900249 675900783 9.080000e-177 630.0
55 TraesCS7B01G339000 chr1B 98.162 272 5 0 1 272 163638361 163638632 4.500000e-130 475.0
56 TraesCS7B01G339000 chr1B 96.466 283 8 1 1 283 297812379 297812659 2.710000e-127 466.0
57 TraesCS7B01G339000 chr4B 98.175 274 5 0 1 274 330859600 330859873 3.480000e-131 479.0
58 TraesCS7B01G339000 chr4B 97.810 274 6 0 1 274 231949086 231949359 1.620000e-129 473.0
59 TraesCS7B01G339000 chr5B 97.810 274 6 0 1 274 711505492 711505765 1.620000e-129 473.0
60 TraesCS7B01G339000 chr5B 97.133 279 8 0 1 279 485399110 485398832 5.820000e-129 472.0
61 TraesCS7B01G339000 chr2D 88.746 311 25 5 2784 3085 29096949 29096640 6.070000e-99 372.0
62 TraesCS7B01G339000 chr2D 86.000 200 19 7 855 1049 518046 518241 6.520000e-49 206.0
63 TraesCS7B01G339000 chr6A 88.449 303 32 3 355 654 540818973 540818671 3.660000e-96 363.0
64 TraesCS7B01G339000 chr4D 88.261 230 16 4 3112 3340 85852684 85852465 1.060000e-66 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G339000 chr7B 593346619 593351586 4967 True 9175.000000 9175 100.000000 1 4968 1 chr7B.!!$R3 4967
1 TraesCS7B01G339000 chr5A 470927699 470932857 5158 False 2119.366667 5341 96.024333 386 4968 3 chr5A.!!$F2 4582
2 TraesCS7B01G339000 chr5A 13086848 13087465 617 True 691.000000 691 86.854000 4335 4968 1 chr5A.!!$R1 633
3 TraesCS7B01G339000 chr3A 662595987 662600029 4042 True 2676.550000 5267 96.614000 1147 4967 2 chr3A.!!$R1 3820
4 TraesCS7B01G339000 chr2B 100100180 100102842 2662 True 4351.000000 4351 96.173000 1969 4629 1 chr2B.!!$R1 2660
5 TraesCS7B01G339000 chr2B 392005734 392007931 2197 False 3432.000000 3432 94.952000 2784 4968 1 chr2B.!!$F1 2184
6 TraesCS7B01G339000 chr2B 788174518 788175135 617 False 708.000000 708 87.284000 4335 4968 1 chr2B.!!$F2 633
7 TraesCS7B01G339000 chr4A 742007972 742011025 3053 True 2032.500000 3496 95.764000 668 3752 2 chr4A.!!$R1 3084
8 TraesCS7B01G339000 chr5D 127937780 127941024 3244 True 1558.666667 3227 92.525667 357 4968 3 chr5D.!!$R1 4611
9 TraesCS7B01G339000 chr7D 530739211 530741423 2212 True 1669.000000 3193 91.849500 854 4460 2 chr7D.!!$R2 3606
10 TraesCS7B01G339000 chr7D 340172620 340175854 3234 False 1548.333333 3203 92.533333 363 4968 3 chr7D.!!$F2 4605
11 TraesCS7B01G339000 chr7D 449501825 449503384 1559 True 1428.000000 1428 83.923000 3428 4968 1 chr7D.!!$R1 1540
12 TraesCS7B01G339000 chr7D 621797465 621799021 1556 False 749.500000 769 86.306500 3428 4968 2 chr7D.!!$F3 1540
13 TraesCS7B01G339000 chr1D 415595240 415598782 3542 False 1464.000000 2913 92.901667 362 4968 3 chr1D.!!$F2 4606
14 TraesCS7B01G339000 chr6D 450187116 450190306 3190 True 1149.000000 2891 93.397500 362 4968 4 chr6D.!!$R1 4606
15 TraesCS7B01G339000 chr3B 775658304 775659965 1661 True 2226.000000 2226 90.893000 855 2521 1 chr3B.!!$R2 1666
16 TraesCS7B01G339000 chr3D 583596426 583597982 1556 False 1404.000000 1404 83.624000 3428 4968 1 chr3D.!!$F1 1540
17 TraesCS7B01G339000 chr7A 41463343 41464488 1145 True 496.500000 778 82.819500 3339 4432 2 chr7A.!!$R1 1093
18 TraesCS7B01G339000 chr7A 617598416 617599955 1539 False 470.666667 778 85.898333 3040 4432 3 chr7A.!!$F1 1392
19 TraesCS7B01G339000 chr2A 756524383 756525922 1539 False 465.333333 778 85.742000 3040 4432 3 chr2A.!!$F1 1392
20 TraesCS7B01G339000 chrUn 314368641 314369257 616 False 728.000000 728 87.874000 4336 4968 1 chrUn.!!$F1 632
21 TraesCS7B01G339000 chr1B 289692839 289693428 589 False 675.000000 675 87.396000 857 1453 1 chr1B.!!$F2 596
22 TraesCS7B01G339000 chr1B 675900249 675900783 534 False 630.000000 630 87.862000 2784 3332 1 chr1B.!!$F4 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.034960 GGGACTTTTGAGGAGCCTCC 60.035 60.000 13.69 1.26 42.09 4.30 F
348 349 1.072331 TGACAAGACAAAGAGGGAGCC 59.928 52.381 0.00 0.00 0.00 4.70 F
2070 2968 0.905357 GGAGCAAGGCCAGAACTCTA 59.095 55.000 5.01 0.00 0.00 2.43 F
2736 3638 0.394565 GAAGGGCGTGCTGATCCTAT 59.605 55.000 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1007 1072 1.422402 GGGAGGAGAGAGAGACCGTAT 59.578 57.143 0.00 0.0 0.0 3.06 R
2210 3109 2.158623 TGCCATTGGAGTTCTTGACAGT 60.159 45.455 6.95 0.0 0.0 3.55 R
3413 4397 0.104120 TGTCGGCATCCATAAGTCGG 59.896 55.000 0.00 0.0 0.0 4.79 R
4516 5605 0.110238 GTTGTGCACGCGAACATGAT 60.110 50.000 15.93 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.726988 ACTATCTCTATTAGATCTCACTTTCGC 58.273 37.037 0.00 0.00 44.17 4.70
71 72 6.944234 TCTCTATTAGATCTCACTTTCGCA 57.056 37.500 0.00 0.00 0.00 5.10
72 73 7.334844 TCTCTATTAGATCTCACTTTCGCAA 57.665 36.000 0.00 0.00 0.00 4.85
73 74 7.421599 TCTCTATTAGATCTCACTTTCGCAAG 58.578 38.462 0.00 0.00 35.92 4.01
74 75 7.067615 TCTCTATTAGATCTCACTTTCGCAAGT 59.932 37.037 0.00 0.00 44.72 3.16
80 81 2.203153 ACTTTCGCAAGTGGCCGT 60.203 55.556 0.00 0.00 42.05 5.68
81 82 2.252260 CTTTCGCAAGTGGCCGTG 59.748 61.111 0.00 0.00 40.31 4.94
82 83 2.203084 TTTCGCAAGTGGCCGTGA 60.203 55.556 0.00 0.00 40.31 4.35
83 84 1.781025 CTTTCGCAAGTGGCCGTGAA 61.781 55.000 0.00 0.00 40.31 3.18
84 85 1.781025 TTTCGCAAGTGGCCGTGAAG 61.781 55.000 0.00 0.00 40.31 3.02
85 86 3.726517 CGCAAGTGGCCGTGAAGG 61.727 66.667 0.00 0.00 44.97 3.46
86 87 3.365265 GCAAGTGGCCGTGAAGGG 61.365 66.667 0.00 0.00 41.48 3.95
87 88 2.429930 CAAGTGGCCGTGAAGGGA 59.570 61.111 0.00 0.00 41.48 4.20
88 89 1.002134 CAAGTGGCCGTGAAGGGAT 60.002 57.895 0.00 0.00 41.48 3.85
89 90 0.609131 CAAGTGGCCGTGAAGGGATT 60.609 55.000 0.00 0.00 41.48 3.01
90 91 0.609131 AAGTGGCCGTGAAGGGATTG 60.609 55.000 0.00 0.00 41.48 2.67
91 92 1.002624 GTGGCCGTGAAGGGATTGA 60.003 57.895 0.00 0.00 41.48 2.57
92 93 1.002624 TGGCCGTGAAGGGATTGAC 60.003 57.895 0.00 0.00 41.48 3.18
93 94 1.002624 GGCCGTGAAGGGATTGACA 60.003 57.895 0.00 0.00 41.48 3.58
94 95 0.608035 GGCCGTGAAGGGATTGACAA 60.608 55.000 0.00 0.00 41.48 3.18
95 96 0.521735 GCCGTGAAGGGATTGACAAC 59.478 55.000 0.00 0.00 41.48 3.32
96 97 1.165270 CCGTGAAGGGATTGACAACC 58.835 55.000 0.00 0.00 35.97 3.77
97 98 1.165270 CGTGAAGGGATTGACAACCC 58.835 55.000 14.59 14.59 45.88 4.11
98 99 1.545841 GTGAAGGGATTGACAACCCC 58.454 55.000 10.02 10.02 46.64 4.95
105 106 4.736126 GGGATTGACAACCCCTTTATTG 57.264 45.455 10.82 0.00 40.19 1.90
106 107 3.118775 GGGATTGACAACCCCTTTATTGC 60.119 47.826 10.82 0.00 40.19 3.56
107 108 3.428862 GGATTGACAACCCCTTTATTGCG 60.429 47.826 0.00 0.00 0.00 4.85
108 109 2.279935 TGACAACCCCTTTATTGCGT 57.720 45.000 0.00 0.00 0.00 5.24
109 110 2.588620 TGACAACCCCTTTATTGCGTT 58.411 42.857 0.00 0.00 0.00 4.84
110 111 2.294791 TGACAACCCCTTTATTGCGTTG 59.705 45.455 0.00 0.00 39.70 4.10
111 112 1.616374 ACAACCCCTTTATTGCGTTGG 59.384 47.619 0.00 0.00 38.46 3.77
112 113 1.616374 CAACCCCTTTATTGCGTTGGT 59.384 47.619 0.00 0.00 32.14 3.67
113 114 2.003937 ACCCCTTTATTGCGTTGGTT 57.996 45.000 0.00 0.00 0.00 3.67
114 115 1.890489 ACCCCTTTATTGCGTTGGTTC 59.110 47.619 0.00 0.00 0.00 3.62
115 116 2.167662 CCCCTTTATTGCGTTGGTTCT 58.832 47.619 0.00 0.00 0.00 3.01
116 117 2.094752 CCCCTTTATTGCGTTGGTTCTG 60.095 50.000 0.00 0.00 0.00 3.02
117 118 2.817258 CCCTTTATTGCGTTGGTTCTGA 59.183 45.455 0.00 0.00 0.00 3.27
118 119 3.119849 CCCTTTATTGCGTTGGTTCTGAG 60.120 47.826 0.00 0.00 0.00 3.35
119 120 3.502211 CCTTTATTGCGTTGGTTCTGAGT 59.498 43.478 0.00 0.00 0.00 3.41
120 121 4.023193 CCTTTATTGCGTTGGTTCTGAGTT 60.023 41.667 0.00 0.00 0.00 3.01
121 122 4.742438 TTATTGCGTTGGTTCTGAGTTC 57.258 40.909 0.00 0.00 0.00 3.01
122 123 2.325583 TTGCGTTGGTTCTGAGTTCT 57.674 45.000 0.00 0.00 0.00 3.01
123 124 2.325583 TGCGTTGGTTCTGAGTTCTT 57.674 45.000 0.00 0.00 0.00 2.52
124 125 2.639065 TGCGTTGGTTCTGAGTTCTTT 58.361 42.857 0.00 0.00 0.00 2.52
125 126 2.354510 TGCGTTGGTTCTGAGTTCTTTG 59.645 45.455 0.00 0.00 0.00 2.77
126 127 2.354821 GCGTTGGTTCTGAGTTCTTTGT 59.645 45.455 0.00 0.00 0.00 2.83
127 128 3.181500 GCGTTGGTTCTGAGTTCTTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
128 129 4.674362 GCGTTGGTTCTGAGTTCTTTGTTT 60.674 41.667 0.00 0.00 0.00 2.83
129 130 4.793216 CGTTGGTTCTGAGTTCTTTGTTTG 59.207 41.667 0.00 0.00 0.00 2.93
130 131 5.619086 CGTTGGTTCTGAGTTCTTTGTTTGT 60.619 40.000 0.00 0.00 0.00 2.83
131 132 5.975693 TGGTTCTGAGTTCTTTGTTTGTT 57.024 34.783 0.00 0.00 0.00 2.83
132 133 6.339587 TGGTTCTGAGTTCTTTGTTTGTTT 57.660 33.333 0.00 0.00 0.00 2.83
133 134 6.155827 TGGTTCTGAGTTCTTTGTTTGTTTG 58.844 36.000 0.00 0.00 0.00 2.93
134 135 6.156519 GGTTCTGAGTTCTTTGTTTGTTTGT 58.843 36.000 0.00 0.00 0.00 2.83
135 136 6.089417 GGTTCTGAGTTCTTTGTTTGTTTGTG 59.911 38.462 0.00 0.00 0.00 3.33
136 137 6.325919 TCTGAGTTCTTTGTTTGTTTGTGT 57.674 33.333 0.00 0.00 0.00 3.72
137 138 7.441890 TCTGAGTTCTTTGTTTGTTTGTGTA 57.558 32.000 0.00 0.00 0.00 2.90
138 139 7.526608 TCTGAGTTCTTTGTTTGTTTGTGTAG 58.473 34.615 0.00 0.00 0.00 2.74
139 140 6.616947 TGAGTTCTTTGTTTGTTTGTGTAGG 58.383 36.000 0.00 0.00 0.00 3.18
140 141 6.207810 TGAGTTCTTTGTTTGTTTGTGTAGGT 59.792 34.615 0.00 0.00 0.00 3.08
141 142 6.386654 AGTTCTTTGTTTGTTTGTGTAGGTG 58.613 36.000 0.00 0.00 0.00 4.00
142 143 4.739195 TCTTTGTTTGTTTGTGTAGGTGC 58.261 39.130 0.00 0.00 0.00 5.01
143 144 2.834574 TGTTTGTTTGTGTAGGTGCG 57.165 45.000 0.00 0.00 0.00 5.34
144 145 2.085320 TGTTTGTTTGTGTAGGTGCGT 58.915 42.857 0.00 0.00 0.00 5.24
145 146 2.159503 TGTTTGTTTGTGTAGGTGCGTG 60.160 45.455 0.00 0.00 0.00 5.34
146 147 1.018148 TTGTTTGTGTAGGTGCGTGG 58.982 50.000 0.00 0.00 0.00 4.94
147 148 0.816018 TGTTTGTGTAGGTGCGTGGG 60.816 55.000 0.00 0.00 0.00 4.61
148 149 0.533308 GTTTGTGTAGGTGCGTGGGA 60.533 55.000 0.00 0.00 0.00 4.37
149 150 0.533308 TTTGTGTAGGTGCGTGGGAC 60.533 55.000 0.00 0.00 0.00 4.46
150 151 1.404479 TTGTGTAGGTGCGTGGGACT 61.404 55.000 0.00 0.00 0.00 3.85
151 152 1.370064 GTGTAGGTGCGTGGGACTT 59.630 57.895 0.00 0.00 0.00 3.01
152 153 0.250166 GTGTAGGTGCGTGGGACTTT 60.250 55.000 0.00 0.00 0.00 2.66
153 154 0.470766 TGTAGGTGCGTGGGACTTTT 59.529 50.000 0.00 0.00 0.00 2.27
154 155 0.872388 GTAGGTGCGTGGGACTTTTG 59.128 55.000 0.00 0.00 0.00 2.44
155 156 0.759959 TAGGTGCGTGGGACTTTTGA 59.240 50.000 0.00 0.00 0.00 2.69
156 157 0.535102 AGGTGCGTGGGACTTTTGAG 60.535 55.000 0.00 0.00 0.00 3.02
157 158 1.515521 GGTGCGTGGGACTTTTGAGG 61.516 60.000 0.00 0.00 0.00 3.86
158 159 0.534203 GTGCGTGGGACTTTTGAGGA 60.534 55.000 0.00 0.00 0.00 3.71
159 160 0.250295 TGCGTGGGACTTTTGAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
160 161 1.578206 GCGTGGGACTTTTGAGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
161 162 0.955919 CGTGGGACTTTTGAGGAGCC 60.956 60.000 0.00 0.00 0.00 4.70
162 163 0.402121 GTGGGACTTTTGAGGAGCCT 59.598 55.000 0.00 0.00 0.00 4.58
163 164 0.693049 TGGGACTTTTGAGGAGCCTC 59.307 55.000 9.61 9.61 43.01 4.70
164 165 0.034960 GGGACTTTTGAGGAGCCTCC 60.035 60.000 13.69 1.26 42.09 4.30
175 176 1.794714 GGAGCCTCCTACTGGATTGA 58.205 55.000 2.64 0.00 42.29 2.57
176 177 2.334023 GGAGCCTCCTACTGGATTGAT 58.666 52.381 2.64 0.00 42.29 2.57
177 178 3.511477 GGAGCCTCCTACTGGATTGATA 58.489 50.000 2.64 0.00 42.29 2.15
178 179 3.259625 GGAGCCTCCTACTGGATTGATAC 59.740 52.174 2.64 0.00 42.29 2.24
179 180 3.243724 AGCCTCCTACTGGATTGATACC 58.756 50.000 0.00 0.00 42.29 2.73
180 181 3.116551 AGCCTCCTACTGGATTGATACCT 60.117 47.826 0.00 0.00 42.29 3.08
181 182 3.648545 GCCTCCTACTGGATTGATACCTT 59.351 47.826 0.00 0.00 42.29 3.50
182 183 4.503991 GCCTCCTACTGGATTGATACCTTG 60.504 50.000 0.00 0.00 42.29 3.61
183 184 4.040952 CCTCCTACTGGATTGATACCTTGG 59.959 50.000 0.00 0.00 42.29 3.61
184 185 4.631234 TCCTACTGGATTGATACCTTGGT 58.369 43.478 0.00 0.00 37.46 3.67
185 186 5.036916 TCCTACTGGATTGATACCTTGGTT 58.963 41.667 0.00 0.00 37.46 3.67
186 187 5.130477 TCCTACTGGATTGATACCTTGGTTC 59.870 44.000 0.00 0.00 37.46 3.62
187 188 5.131142 CCTACTGGATTGATACCTTGGTTCT 59.869 44.000 0.00 0.00 34.57 3.01
188 189 6.326583 CCTACTGGATTGATACCTTGGTTCTA 59.673 42.308 0.00 0.00 34.57 2.10
189 190 6.636454 ACTGGATTGATACCTTGGTTCTAA 57.364 37.500 0.00 0.00 0.00 2.10
190 191 7.027874 ACTGGATTGATACCTTGGTTCTAAA 57.972 36.000 0.00 0.00 0.00 1.85
191 192 7.466804 ACTGGATTGATACCTTGGTTCTAAAA 58.533 34.615 0.00 0.00 0.00 1.52
192 193 7.947890 ACTGGATTGATACCTTGGTTCTAAAAA 59.052 33.333 0.00 0.00 0.00 1.94
215 216 8.843885 AAAACTGAGGGAAATACTTACACTAC 57.156 34.615 0.00 0.00 0.00 2.73
216 217 7.793948 AACTGAGGGAAATACTTACACTACT 57.206 36.000 0.00 0.00 0.00 2.57
217 218 8.890410 AACTGAGGGAAATACTTACACTACTA 57.110 34.615 0.00 0.00 0.00 1.82
218 219 9.490083 AACTGAGGGAAATACTTACACTACTAT 57.510 33.333 0.00 0.00 0.00 2.12
219 220 9.490083 ACTGAGGGAAATACTTACACTACTATT 57.510 33.333 0.00 0.00 0.00 1.73
220 221 9.751542 CTGAGGGAAATACTTACACTACTATTG 57.248 37.037 0.00 0.00 0.00 1.90
221 222 9.263446 TGAGGGAAATACTTACACTACTATTGT 57.737 33.333 0.00 0.00 0.00 2.71
223 224 9.886132 AGGGAAATACTTACACTACTATTGTTG 57.114 33.333 0.00 0.00 0.00 3.33
224 225 8.610035 GGGAAATACTTACACTACTATTGTTGC 58.390 37.037 0.00 0.00 0.00 4.17
225 226 9.158233 GGAAATACTTACACTACTATTGTTGCA 57.842 33.333 0.00 0.00 0.00 4.08
228 229 9.884636 AATACTTACACTACTATTGTTGCATCA 57.115 29.630 0.00 0.00 0.00 3.07
229 230 7.596749 ACTTACACTACTATTGTTGCATCAC 57.403 36.000 0.00 0.00 0.00 3.06
230 231 6.594159 ACTTACACTACTATTGTTGCATCACC 59.406 38.462 0.00 0.00 0.00 4.02
231 232 4.261801 ACACTACTATTGTTGCATCACCC 58.738 43.478 0.00 0.00 0.00 4.61
232 233 4.019321 ACACTACTATTGTTGCATCACCCT 60.019 41.667 0.00 0.00 0.00 4.34
233 234 4.943705 CACTACTATTGTTGCATCACCCTT 59.056 41.667 0.00 0.00 0.00 3.95
234 235 5.415701 CACTACTATTGTTGCATCACCCTTT 59.584 40.000 0.00 0.00 0.00 3.11
235 236 5.648092 ACTACTATTGTTGCATCACCCTTTC 59.352 40.000 0.00 0.00 0.00 2.62
236 237 3.763897 ACTATTGTTGCATCACCCTTTCC 59.236 43.478 0.00 0.00 0.00 3.13
237 238 2.380064 TTGTTGCATCACCCTTTCCT 57.620 45.000 0.00 0.00 0.00 3.36
238 239 1.909700 TGTTGCATCACCCTTTCCTC 58.090 50.000 0.00 0.00 0.00 3.71
239 240 1.425066 TGTTGCATCACCCTTTCCTCT 59.575 47.619 0.00 0.00 0.00 3.69
240 241 2.158475 TGTTGCATCACCCTTTCCTCTT 60.158 45.455 0.00 0.00 0.00 2.85
241 242 2.489722 GTTGCATCACCCTTTCCTCTTC 59.510 50.000 0.00 0.00 0.00 2.87
242 243 1.704628 TGCATCACCCTTTCCTCTTCA 59.295 47.619 0.00 0.00 0.00 3.02
243 244 2.108075 TGCATCACCCTTTCCTCTTCAA 59.892 45.455 0.00 0.00 0.00 2.69
244 245 2.751806 GCATCACCCTTTCCTCTTCAAG 59.248 50.000 0.00 0.00 0.00 3.02
258 259 5.744666 CTCTTCAAGGAAAACCAACGTAA 57.255 39.130 0.00 0.00 0.00 3.18
260 261 3.974871 TCAAGGAAAACCAACGTAAGC 57.025 42.857 0.00 0.00 45.62 3.09
261 262 3.547746 TCAAGGAAAACCAACGTAAGCT 58.452 40.909 0.00 0.00 45.62 3.74
262 263 3.562557 TCAAGGAAAACCAACGTAAGCTC 59.437 43.478 0.00 0.00 45.62 4.09
263 264 3.202829 AGGAAAACCAACGTAAGCTCA 57.797 42.857 0.00 0.00 45.62 4.26
264 265 3.547746 AGGAAAACCAACGTAAGCTCAA 58.452 40.909 0.00 0.00 45.62 3.02
265 266 3.564225 AGGAAAACCAACGTAAGCTCAAG 59.436 43.478 0.00 0.00 45.62 3.02
266 267 3.562557 GGAAAACCAACGTAAGCTCAAGA 59.437 43.478 0.00 0.00 45.62 3.02
267 268 4.524749 GAAAACCAACGTAAGCTCAAGAC 58.475 43.478 0.00 0.00 45.62 3.01
268 269 1.779569 ACCAACGTAAGCTCAAGACG 58.220 50.000 8.38 8.38 45.62 4.18
273 274 2.257974 CGTAAGCTCAAGACGTAGCA 57.742 50.000 10.48 0.00 41.32 3.49
274 275 2.798680 CGTAAGCTCAAGACGTAGCAT 58.201 47.619 10.48 1.16 41.32 3.79
275 276 3.179830 CGTAAGCTCAAGACGTAGCATT 58.820 45.455 10.48 4.87 41.32 3.56
276 277 4.348656 CGTAAGCTCAAGACGTAGCATTA 58.651 43.478 10.48 4.06 41.32 1.90
277 278 4.976731 CGTAAGCTCAAGACGTAGCATTAT 59.023 41.667 10.48 0.00 41.32 1.28
278 279 5.108217 CGTAAGCTCAAGACGTAGCATTATG 60.108 44.000 10.48 7.57 41.32 1.90
279 280 4.392921 AGCTCAAGACGTAGCATTATGT 57.607 40.909 10.48 0.00 41.32 2.29
280 281 4.363999 AGCTCAAGACGTAGCATTATGTC 58.636 43.478 10.48 0.00 43.28 3.06
281 282 3.491267 GCTCAAGACGTAGCATTATGTCC 59.509 47.826 3.18 0.00 43.76 4.02
282 283 4.051922 CTCAAGACGTAGCATTATGTCCC 58.948 47.826 0.00 0.00 43.76 4.46
283 284 3.449377 TCAAGACGTAGCATTATGTCCCA 59.551 43.478 0.00 0.00 43.76 4.37
284 285 4.100963 TCAAGACGTAGCATTATGTCCCAT 59.899 41.667 0.00 0.00 43.76 4.00
285 286 3.995199 AGACGTAGCATTATGTCCCATG 58.005 45.455 0.00 0.00 43.76 3.66
286 287 3.641436 AGACGTAGCATTATGTCCCATGA 59.359 43.478 0.00 0.00 43.76 3.07
287 288 4.100963 AGACGTAGCATTATGTCCCATGAA 59.899 41.667 0.00 0.00 43.76 2.57
288 289 4.127171 ACGTAGCATTATGTCCCATGAAC 58.873 43.478 0.00 0.00 0.00 3.18
289 290 4.141711 ACGTAGCATTATGTCCCATGAACT 60.142 41.667 0.00 0.00 0.00 3.01
290 291 4.449068 CGTAGCATTATGTCCCATGAACTC 59.551 45.833 0.00 0.00 0.00 3.01
291 292 3.470709 AGCATTATGTCCCATGAACTCG 58.529 45.455 0.00 0.00 0.00 4.18
292 293 3.118261 AGCATTATGTCCCATGAACTCGT 60.118 43.478 0.00 0.00 0.00 4.18
293 294 4.100963 AGCATTATGTCCCATGAACTCGTA 59.899 41.667 0.00 0.00 0.00 3.43
294 295 4.997395 GCATTATGTCCCATGAACTCGTAT 59.003 41.667 0.00 0.00 0.00 3.06
295 296 5.120830 GCATTATGTCCCATGAACTCGTATC 59.879 44.000 0.00 0.00 0.00 2.24
296 297 3.753294 ATGTCCCATGAACTCGTATCC 57.247 47.619 0.00 0.00 0.00 2.59
297 298 1.760613 TGTCCCATGAACTCGTATCCC 59.239 52.381 0.00 0.00 0.00 3.85
298 299 1.760613 GTCCCATGAACTCGTATCCCA 59.239 52.381 0.00 0.00 0.00 4.37
299 300 2.368875 GTCCCATGAACTCGTATCCCAT 59.631 50.000 0.00 0.00 0.00 4.00
300 301 3.576982 GTCCCATGAACTCGTATCCCATA 59.423 47.826 0.00 0.00 0.00 2.74
301 302 4.223032 GTCCCATGAACTCGTATCCCATAT 59.777 45.833 0.00 0.00 0.00 1.78
302 303 5.421056 GTCCCATGAACTCGTATCCCATATA 59.579 44.000 0.00 0.00 0.00 0.86
303 304 6.098409 GTCCCATGAACTCGTATCCCATATAT 59.902 42.308 0.00 0.00 0.00 0.86
304 305 6.323996 TCCCATGAACTCGTATCCCATATATC 59.676 42.308 0.00 0.00 0.00 1.63
305 306 6.098266 CCCATGAACTCGTATCCCATATATCA 59.902 42.308 0.00 0.00 0.00 2.15
306 307 7.202038 CCCATGAACTCGTATCCCATATATCAT 60.202 40.741 0.00 0.00 0.00 2.45
307 308 7.869937 CCATGAACTCGTATCCCATATATCATC 59.130 40.741 0.00 0.00 0.00 2.92
308 309 7.954666 TGAACTCGTATCCCATATATCATCA 57.045 36.000 0.00 0.00 0.00 3.07
309 310 8.361169 TGAACTCGTATCCCATATATCATCAA 57.639 34.615 0.00 0.00 0.00 2.57
310 311 8.981659 TGAACTCGTATCCCATATATCATCAAT 58.018 33.333 0.00 0.00 0.00 2.57
311 312 9.823647 GAACTCGTATCCCATATATCATCAATT 57.176 33.333 0.00 0.00 0.00 2.32
312 313 9.605275 AACTCGTATCCCATATATCATCAATTG 57.395 33.333 0.00 0.00 0.00 2.32
313 314 7.712639 ACTCGTATCCCATATATCATCAATTGC 59.287 37.037 0.00 0.00 0.00 3.56
314 315 6.701400 TCGTATCCCATATATCATCAATTGCG 59.299 38.462 0.00 0.00 0.00 4.85
315 316 6.701400 CGTATCCCATATATCATCAATTGCGA 59.299 38.462 0.00 0.00 0.00 5.10
316 317 7.386025 CGTATCCCATATATCATCAATTGCGAT 59.614 37.037 12.87 12.87 0.00 4.58
317 318 6.930667 TCCCATATATCATCAATTGCGATG 57.069 37.500 16.24 9.70 43.50 3.84
324 325 3.466836 TCATCAATTGCGATGAGGTACC 58.533 45.455 2.73 2.73 45.31 3.34
325 326 3.134623 TCATCAATTGCGATGAGGTACCT 59.865 43.478 16.26 16.26 45.31 3.08
326 327 4.343814 TCATCAATTGCGATGAGGTACCTA 59.656 41.667 16.29 3.87 45.31 3.08
327 328 4.955811 TCAATTGCGATGAGGTACCTAT 57.044 40.909 16.29 8.93 0.00 2.57
328 329 5.290493 TCAATTGCGATGAGGTACCTATT 57.710 39.130 16.29 6.19 0.00 1.73
329 330 5.056480 TCAATTGCGATGAGGTACCTATTG 58.944 41.667 16.29 18.08 0.00 1.90
330 331 4.955811 ATTGCGATGAGGTACCTATTGA 57.044 40.909 16.29 0.00 0.00 2.57
331 332 3.728076 TGCGATGAGGTACCTATTGAC 57.272 47.619 16.29 5.58 0.00 3.18
332 333 3.028130 TGCGATGAGGTACCTATTGACA 58.972 45.455 16.29 8.69 0.00 3.58
333 334 3.449377 TGCGATGAGGTACCTATTGACAA 59.551 43.478 16.29 0.00 0.00 3.18
334 335 4.051922 GCGATGAGGTACCTATTGACAAG 58.948 47.826 16.29 8.02 0.00 3.16
335 336 4.202121 GCGATGAGGTACCTATTGACAAGA 60.202 45.833 16.29 0.00 0.00 3.02
336 337 5.282510 CGATGAGGTACCTATTGACAAGAC 58.717 45.833 16.29 0.00 0.00 3.01
337 338 5.163550 CGATGAGGTACCTATTGACAAGACA 60.164 44.000 16.29 4.64 0.00 3.41
338 339 6.620877 ATGAGGTACCTATTGACAAGACAA 57.379 37.500 16.29 0.00 0.00 3.18
339 340 6.428083 TGAGGTACCTATTGACAAGACAAA 57.572 37.500 16.29 0.00 33.44 2.83
340 341 6.464222 TGAGGTACCTATTGACAAGACAAAG 58.536 40.000 16.29 0.00 33.44 2.77
341 342 6.269077 TGAGGTACCTATTGACAAGACAAAGA 59.731 38.462 16.29 0.00 33.44 2.52
342 343 6.702329 AGGTACCTATTGACAAGACAAAGAG 58.298 40.000 14.41 0.00 33.44 2.85
343 344 5.875359 GGTACCTATTGACAAGACAAAGAGG 59.125 44.000 4.06 11.90 40.09 3.69
344 345 4.911390 ACCTATTGACAAGACAAAGAGGG 58.089 43.478 15.45 7.52 39.32 4.30
345 346 4.597507 ACCTATTGACAAGACAAAGAGGGA 59.402 41.667 15.45 0.00 39.32 4.20
346 347 5.181748 CCTATTGACAAGACAAAGAGGGAG 58.818 45.833 0.00 0.00 35.32 4.30
347 348 2.550830 TGACAAGACAAAGAGGGAGC 57.449 50.000 0.00 0.00 0.00 4.70
348 349 1.072331 TGACAAGACAAAGAGGGAGCC 59.928 52.381 0.00 0.00 0.00 4.70
349 350 1.072331 GACAAGACAAAGAGGGAGCCA 59.928 52.381 0.00 0.00 0.00 4.75
350 351 1.707427 ACAAGACAAAGAGGGAGCCAT 59.293 47.619 0.00 0.00 0.00 4.40
351 352 2.912956 ACAAGACAAAGAGGGAGCCATA 59.087 45.455 0.00 0.00 0.00 2.74
352 353 3.054802 ACAAGACAAAGAGGGAGCCATAG 60.055 47.826 0.00 0.00 0.00 2.23
353 354 3.121929 AGACAAAGAGGGAGCCATAGA 57.878 47.619 0.00 0.00 0.00 1.98
354 355 3.663198 AGACAAAGAGGGAGCCATAGAT 58.337 45.455 0.00 0.00 0.00 1.98
355 356 4.043596 AGACAAAGAGGGAGCCATAGATT 58.956 43.478 0.00 0.00 0.00 2.40
360 361 6.830838 ACAAAGAGGGAGCCATAGATTAAAAG 59.169 38.462 0.00 0.00 0.00 2.27
441 442 4.202131 GGTGGAGAAATAGGAGTTACGAGG 60.202 50.000 0.00 0.00 0.00 4.63
449 450 2.363683 AGGAGTTACGAGGAGTTACGG 58.636 52.381 0.00 0.00 37.45 4.02
548 549 4.272748 GGGTAGATTCGTCCAATTTAGTGC 59.727 45.833 3.42 0.00 0.00 4.40
621 623 1.454111 CTGTCGATCCCCTCTCCGT 60.454 63.158 0.00 0.00 0.00 4.69
745 751 3.532155 CCTTCTCCTCCCCGCTCG 61.532 72.222 0.00 0.00 0.00 5.03
911 973 2.093973 CCAACTCCTGCATCTAGTCGTT 60.094 50.000 0.00 0.00 0.00 3.85
921 983 3.737355 GCATCTAGTCGTTGACCTTACCC 60.737 52.174 0.00 0.00 32.18 3.69
928 990 1.202604 CGTTGACCTTACCCACACTGT 60.203 52.381 0.00 0.00 0.00 3.55
952 1014 4.056125 CGCTGCTGGTCGAGGTCA 62.056 66.667 0.00 0.00 0.00 4.02
1045 1551 1.068121 CCCCCTCATCCCCTATGTTC 58.932 60.000 0.00 0.00 36.89 3.18
1145 1652 1.135139 AGCGGCGAAGATATGCGATAT 59.865 47.619 12.98 0.00 0.00 1.63
1357 2213 5.256474 AGGACCAAAATCATCTACACTTGG 58.744 41.667 0.00 0.00 39.38 3.61
1550 2408 1.551883 GGTGAAATCCATGGCTGCTTT 59.448 47.619 6.96 4.05 0.00 3.51
1551 2409 2.027837 GGTGAAATCCATGGCTGCTTTT 60.028 45.455 6.96 1.66 0.00 2.27
1843 2741 5.065914 ACAAGCATCTTGTCAAAGCTTAGA 58.934 37.500 15.21 0.00 43.06 2.10
1882 2780 3.540314 TCAGTGGCAATTGCAAAGTTT 57.460 38.095 30.32 7.87 44.36 2.66
2070 2968 0.905357 GGAGCAAGGCCAGAACTCTA 59.095 55.000 5.01 0.00 0.00 2.43
2139 3038 5.580691 GCCTTTTTCAGGTATTTGGCAATAC 59.419 40.000 0.00 6.06 46.07 1.89
2210 3109 2.113807 CCATCAGAGATGTCACAGGGA 58.886 52.381 6.29 0.00 0.00 4.20
2350 3249 3.381983 TGCGACGTGCTCATCCCT 61.382 61.111 0.00 0.00 46.63 4.20
2413 3312 2.692557 CTCGTCCCATCTCACTTCATCT 59.307 50.000 0.00 0.00 0.00 2.90
2604 3506 2.852075 AACAGACCCCGAGGCCAA 60.852 61.111 5.01 0.00 36.11 4.52
2605 3507 3.192103 AACAGACCCCGAGGCCAAC 62.192 63.158 5.01 0.00 36.11 3.77
2606 3508 3.636231 CAGACCCCGAGGCCAACA 61.636 66.667 5.01 0.00 36.11 3.33
2664 3566 3.370276 TGCATTTGTTGACACATTCACG 58.630 40.909 0.00 0.00 32.26 4.35
2736 3638 0.394565 GAAGGGCGTGCTGATCCTAT 59.605 55.000 0.00 0.00 0.00 2.57
2759 3661 1.825191 CATCATGGCCAACTCCGGG 60.825 63.158 10.96 0.00 0.00 5.73
2791 3693 4.379243 CTGCTTCGAGTGGGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
2836 3738 0.676466 TTTCGGATCACGCTGCCATT 60.676 50.000 0.00 0.00 43.86 3.16
2926 3829 6.721318 TCTACCTTATTCCTTGCAAGTTCAT 58.279 36.000 24.35 14.85 0.00 2.57
3235 4142 3.012518 CCGGAGCTTCAATGACAAATCT 58.987 45.455 0.00 0.00 0.00 2.40
3285 4192 2.027073 GCACGAGCCATGTCGACAA 61.027 57.895 24.13 6.23 42.85 3.18
3384 4368 2.479837 ACGCTGAGAGAGAGTCTATCG 58.520 52.381 9.07 0.50 37.53 2.92
3413 4397 0.038892 CCATGCTGTTGTGGCTGAAC 60.039 55.000 0.00 0.00 0.00 3.18
3637 4641 9.140286 TGATCTTTGAGTCGATGTTAAGTAAAG 57.860 33.333 0.00 0.00 0.00 1.85
3686 4690 3.685756 CCGCCTTTTCGTTCCTAAATGTA 59.314 43.478 0.00 0.00 0.00 2.29
3687 4691 4.201783 CCGCCTTTTCGTTCCTAAATGTAG 60.202 45.833 0.00 0.00 0.00 2.74
3785 4789 4.473477 ACTAGTCTGTTATCCCAAGTGC 57.527 45.455 0.00 0.00 0.00 4.40
3812 4816 5.588568 TCAGTTTTTGCACTGTTTTTGTG 57.411 34.783 2.37 0.00 44.10 3.33
3869 4873 1.253593 GCCCCTTTCAAGCCTTCCAG 61.254 60.000 0.00 0.00 0.00 3.86
3984 5015 7.573283 GCGCATATAAAAGATAAAAGAGGACCC 60.573 40.741 0.30 0.00 0.00 4.46
4236 5299 7.337184 CAGTTACAGTAGGAGATTCAGACACTA 59.663 40.741 0.00 0.00 0.00 2.74
4265 5336 5.126067 GTGATTATGCCACTGGACTATTGT 58.874 41.667 0.00 0.00 0.00 2.71
4354 5443 6.054941 GGACATCTTGGAAAACCAAAATTGT 58.945 36.000 0.00 0.00 0.00 2.71
4481 5570 2.012673 GCAGTCACCTTTAGCATGGAG 58.987 52.381 0.00 0.00 0.00 3.86
4516 5605 5.535029 TGGCCCCTATTTTAGTTCTCTCTA 58.465 41.667 0.00 0.00 0.00 2.43
4574 5681 5.067674 AGCAAGTTTAGCATCTGTTTGTTCA 59.932 36.000 0.00 0.00 0.00 3.18
4576 5683 6.421801 GCAAGTTTAGCATCTGTTTGTTCATT 59.578 34.615 0.00 0.00 0.00 2.57
4577 5684 7.568134 GCAAGTTTAGCATCTGTTTGTTCATTG 60.568 37.037 0.00 0.00 0.00 2.82
4578 5685 5.922544 AGTTTAGCATCTGTTTGTTCATTGC 59.077 36.000 0.00 0.00 0.00 3.56
4579 5686 5.450592 TTAGCATCTGTTTGTTCATTGCA 57.549 34.783 0.00 0.00 32.52 4.08
4582 5689 3.918591 GCATCTGTTTGTTCATTGCAGAG 59.081 43.478 0.00 0.00 39.20 3.35
4643 5780 8.381636 AGTTGTCTAGTTAGTACCAGAACTCTA 58.618 37.037 8.30 0.00 37.16 2.43
4760 5906 7.812191 TGTATCGCATTAGTTTTGAAGCAAAAT 59.188 29.630 8.37 2.15 43.66 1.82
4765 5911 7.008266 CGCATTAGTTTTGAAGCAAAATACGAT 59.992 33.333 8.37 0.36 43.66 3.73
4801 5947 7.126421 ACCAACTCTTGTCCAGATGTCTATATT 59.874 37.037 0.00 0.00 0.00 1.28
4852 5998 9.388506 CCTGATGCTATTCTTTCTTCTTTTCTA 57.611 33.333 0.00 0.00 0.00 2.10
4880 6026 3.633525 GAGGCTGGCATTTGACAATATGA 59.366 43.478 3.38 0.00 29.15 2.15
4909 6055 2.301583 TGTGCATTGACTACTGGTGCTA 59.698 45.455 0.00 0.00 36.78 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.726988 GCGAAAGTGAGATCTAATAGAGATAGT 58.273 37.037 0.00 0.00 45.48 2.12
45 46 8.726068 TGCGAAAGTGAGATCTAATAGAGATAG 58.274 37.037 0.00 0.00 45.48 2.08
46 47 8.622948 TGCGAAAGTGAGATCTAATAGAGATA 57.377 34.615 0.00 0.00 45.48 1.98
48 49 6.944234 TGCGAAAGTGAGATCTAATAGAGA 57.056 37.500 0.00 0.00 39.01 3.10
49 50 7.199766 ACTTGCGAAAGTGAGATCTAATAGAG 58.800 38.462 8.35 0.00 0.00 2.43
50 51 7.101652 ACTTGCGAAAGTGAGATCTAATAGA 57.898 36.000 8.35 0.00 0.00 1.98
63 64 2.203153 ACGGCCACTTGCGAAAGT 60.203 55.556 1.82 1.82 42.61 2.66
64 65 1.781025 TTCACGGCCACTTGCGAAAG 61.781 55.000 2.24 0.10 42.61 2.62
65 66 1.781025 CTTCACGGCCACTTGCGAAA 61.781 55.000 2.24 0.00 42.61 3.46
66 67 2.203084 TTCACGGCCACTTGCGAA 60.203 55.556 2.24 0.00 42.61 4.70
67 68 2.664851 CTTCACGGCCACTTGCGA 60.665 61.111 2.24 0.00 42.61 5.10
68 69 3.726517 CCTTCACGGCCACTTGCG 61.727 66.667 2.24 0.00 42.61 4.85
69 70 3.365265 CCCTTCACGGCCACTTGC 61.365 66.667 2.24 0.00 40.16 4.01
70 71 0.609131 AATCCCTTCACGGCCACTTG 60.609 55.000 2.24 0.00 0.00 3.16
71 72 0.609131 CAATCCCTTCACGGCCACTT 60.609 55.000 2.24 0.00 0.00 3.16
72 73 1.002134 CAATCCCTTCACGGCCACT 60.002 57.895 2.24 0.00 0.00 4.00
73 74 1.002624 TCAATCCCTTCACGGCCAC 60.003 57.895 2.24 0.00 0.00 5.01
74 75 1.002624 GTCAATCCCTTCACGGCCA 60.003 57.895 2.24 0.00 0.00 5.36
75 76 0.608035 TTGTCAATCCCTTCACGGCC 60.608 55.000 0.00 0.00 0.00 6.13
76 77 0.521735 GTTGTCAATCCCTTCACGGC 59.478 55.000 0.00 0.00 0.00 5.68
77 78 1.165270 GGTTGTCAATCCCTTCACGG 58.835 55.000 0.00 0.00 0.00 4.94
78 79 1.165270 GGGTTGTCAATCCCTTCACG 58.835 55.000 3.15 0.00 40.48 4.35
79 80 1.545841 GGGGTTGTCAATCCCTTCAC 58.454 55.000 24.72 0.00 43.00 3.18
84 85 3.118775 GCAATAAAGGGGTTGTCAATCCC 60.119 47.826 24.64 24.64 42.73 3.85
85 86 3.428862 CGCAATAAAGGGGTTGTCAATCC 60.429 47.826 6.29 6.29 0.00 3.01
86 87 3.192633 ACGCAATAAAGGGGTTGTCAATC 59.807 43.478 0.00 0.00 0.00 2.67
87 88 3.161866 ACGCAATAAAGGGGTTGTCAAT 58.838 40.909 0.00 0.00 0.00 2.57
88 89 2.588620 ACGCAATAAAGGGGTTGTCAA 58.411 42.857 0.00 0.00 0.00 3.18
89 90 2.279935 ACGCAATAAAGGGGTTGTCA 57.720 45.000 0.00 0.00 0.00 3.58
93 94 2.003937 ACCAACGCAATAAAGGGGTT 57.996 45.000 0.00 0.00 41.39 4.11
94 95 1.890489 GAACCAACGCAATAAAGGGGT 59.110 47.619 0.00 0.00 0.00 4.95
95 96 2.094752 CAGAACCAACGCAATAAAGGGG 60.095 50.000 0.00 0.00 0.00 4.79
96 97 2.817258 TCAGAACCAACGCAATAAAGGG 59.183 45.455 0.00 0.00 0.00 3.95
97 98 3.502211 ACTCAGAACCAACGCAATAAAGG 59.498 43.478 0.00 0.00 0.00 3.11
98 99 4.749245 ACTCAGAACCAACGCAATAAAG 57.251 40.909 0.00 0.00 0.00 1.85
99 100 4.819630 AGAACTCAGAACCAACGCAATAAA 59.180 37.500 0.00 0.00 0.00 1.40
100 101 4.385825 AGAACTCAGAACCAACGCAATAA 58.614 39.130 0.00 0.00 0.00 1.40
101 102 4.002906 AGAACTCAGAACCAACGCAATA 57.997 40.909 0.00 0.00 0.00 1.90
102 103 2.851195 AGAACTCAGAACCAACGCAAT 58.149 42.857 0.00 0.00 0.00 3.56
103 104 2.325583 AGAACTCAGAACCAACGCAA 57.674 45.000 0.00 0.00 0.00 4.85
104 105 2.325583 AAGAACTCAGAACCAACGCA 57.674 45.000 0.00 0.00 0.00 5.24
105 106 2.354821 ACAAAGAACTCAGAACCAACGC 59.645 45.455 0.00 0.00 0.00 4.84
106 107 4.616181 AACAAAGAACTCAGAACCAACG 57.384 40.909 0.00 0.00 0.00 4.10
107 108 5.709966 ACAAACAAAGAACTCAGAACCAAC 58.290 37.500 0.00 0.00 0.00 3.77
108 109 5.975693 ACAAACAAAGAACTCAGAACCAA 57.024 34.783 0.00 0.00 0.00 3.67
109 110 5.975693 AACAAACAAAGAACTCAGAACCA 57.024 34.783 0.00 0.00 0.00 3.67
110 111 6.089417 CACAAACAAACAAAGAACTCAGAACC 59.911 38.462 0.00 0.00 0.00 3.62
111 112 6.640907 ACACAAACAAACAAAGAACTCAGAAC 59.359 34.615 0.00 0.00 0.00 3.01
112 113 6.744112 ACACAAACAAACAAAGAACTCAGAA 58.256 32.000 0.00 0.00 0.00 3.02
113 114 6.325919 ACACAAACAAACAAAGAACTCAGA 57.674 33.333 0.00 0.00 0.00 3.27
114 115 6.747280 CCTACACAAACAAACAAAGAACTCAG 59.253 38.462 0.00 0.00 0.00 3.35
115 116 6.207810 ACCTACACAAACAAACAAAGAACTCA 59.792 34.615 0.00 0.00 0.00 3.41
116 117 6.526674 CACCTACACAAACAAACAAAGAACTC 59.473 38.462 0.00 0.00 0.00 3.01
117 118 6.386654 CACCTACACAAACAAACAAAGAACT 58.613 36.000 0.00 0.00 0.00 3.01
118 119 5.061684 GCACCTACACAAACAAACAAAGAAC 59.938 40.000 0.00 0.00 0.00 3.01
119 120 5.164954 GCACCTACACAAACAAACAAAGAA 58.835 37.500 0.00 0.00 0.00 2.52
120 121 4.673061 CGCACCTACACAAACAAACAAAGA 60.673 41.667 0.00 0.00 0.00 2.52
121 122 3.545873 CGCACCTACACAAACAAACAAAG 59.454 43.478 0.00 0.00 0.00 2.77
122 123 3.057456 ACGCACCTACACAAACAAACAAA 60.057 39.130 0.00 0.00 0.00 2.83
123 124 2.488545 ACGCACCTACACAAACAAACAA 59.511 40.909 0.00 0.00 0.00 2.83
124 125 2.085320 ACGCACCTACACAAACAAACA 58.915 42.857 0.00 0.00 0.00 2.83
125 126 2.446282 CACGCACCTACACAAACAAAC 58.554 47.619 0.00 0.00 0.00 2.93
126 127 1.402259 CCACGCACCTACACAAACAAA 59.598 47.619 0.00 0.00 0.00 2.83
127 128 1.018148 CCACGCACCTACACAAACAA 58.982 50.000 0.00 0.00 0.00 2.83
128 129 0.816018 CCCACGCACCTACACAAACA 60.816 55.000 0.00 0.00 0.00 2.83
129 130 0.533308 TCCCACGCACCTACACAAAC 60.533 55.000 0.00 0.00 0.00 2.93
130 131 0.533308 GTCCCACGCACCTACACAAA 60.533 55.000 0.00 0.00 0.00 2.83
131 132 1.070105 GTCCCACGCACCTACACAA 59.930 57.895 0.00 0.00 0.00 3.33
132 133 1.404479 AAGTCCCACGCACCTACACA 61.404 55.000 0.00 0.00 0.00 3.72
133 134 0.250166 AAAGTCCCACGCACCTACAC 60.250 55.000 0.00 0.00 0.00 2.90
134 135 0.470766 AAAAGTCCCACGCACCTACA 59.529 50.000 0.00 0.00 0.00 2.74
135 136 0.872388 CAAAAGTCCCACGCACCTAC 59.128 55.000 0.00 0.00 0.00 3.18
136 137 0.759959 TCAAAAGTCCCACGCACCTA 59.240 50.000 0.00 0.00 0.00 3.08
137 138 0.535102 CTCAAAAGTCCCACGCACCT 60.535 55.000 0.00 0.00 0.00 4.00
138 139 1.515521 CCTCAAAAGTCCCACGCACC 61.516 60.000 0.00 0.00 0.00 5.01
139 140 0.534203 TCCTCAAAAGTCCCACGCAC 60.534 55.000 0.00 0.00 0.00 5.34
140 141 0.250295 CTCCTCAAAAGTCCCACGCA 60.250 55.000 0.00 0.00 0.00 5.24
141 142 1.578206 GCTCCTCAAAAGTCCCACGC 61.578 60.000 0.00 0.00 0.00 5.34
142 143 0.955919 GGCTCCTCAAAAGTCCCACG 60.956 60.000 0.00 0.00 0.00 4.94
143 144 0.402121 AGGCTCCTCAAAAGTCCCAC 59.598 55.000 0.00 0.00 0.00 4.61
144 145 0.693049 GAGGCTCCTCAAAAGTCCCA 59.307 55.000 10.90 0.00 42.31 4.37
145 146 0.034960 GGAGGCTCCTCAAAAGTCCC 60.035 60.000 26.44 0.00 44.40 4.46
146 147 0.988063 AGGAGGCTCCTCAAAAGTCC 59.012 55.000 30.46 1.67 45.66 3.85
147 148 2.835156 AGTAGGAGGCTCCTCAAAAGTC 59.165 50.000 38.26 19.36 45.66 3.01
148 149 2.569404 CAGTAGGAGGCTCCTCAAAAGT 59.431 50.000 38.26 21.23 45.66 2.66
149 150 2.093235 CCAGTAGGAGGCTCCTCAAAAG 60.093 54.545 38.26 22.91 45.66 2.27
150 151 1.909302 CCAGTAGGAGGCTCCTCAAAA 59.091 52.381 38.26 19.49 45.66 2.44
151 152 1.078823 TCCAGTAGGAGGCTCCTCAAA 59.921 52.381 38.26 19.88 45.66 2.69
152 153 0.710588 TCCAGTAGGAGGCTCCTCAA 59.289 55.000 38.26 20.68 45.66 3.02
153 154 0.937441 ATCCAGTAGGAGGCTCCTCA 59.063 55.000 38.26 21.58 45.66 3.86
154 155 1.691434 CAATCCAGTAGGAGGCTCCTC 59.309 57.143 38.26 27.25 45.66 3.71
163 164 5.131142 AGAACCAAGGTATCAATCCAGTAGG 59.869 44.000 0.00 0.00 0.00 3.18
164 165 6.240549 AGAACCAAGGTATCAATCCAGTAG 57.759 41.667 0.00 0.00 0.00 2.57
165 166 7.743116 TTAGAACCAAGGTATCAATCCAGTA 57.257 36.000 0.00 0.00 0.00 2.74
166 167 6.636454 TTAGAACCAAGGTATCAATCCAGT 57.364 37.500 0.00 0.00 0.00 4.00
167 168 7.938140 TTTTAGAACCAAGGTATCAATCCAG 57.062 36.000 0.00 0.00 0.00 3.86
189 190 9.281371 GTAGTGTAAGTATTTCCCTCAGTTTTT 57.719 33.333 0.00 0.00 0.00 1.94
190 191 8.657712 AGTAGTGTAAGTATTTCCCTCAGTTTT 58.342 33.333 0.00 0.00 0.00 2.43
191 192 8.203681 AGTAGTGTAAGTATTTCCCTCAGTTT 57.796 34.615 0.00 0.00 0.00 2.66
192 193 7.793948 AGTAGTGTAAGTATTTCCCTCAGTT 57.206 36.000 0.00 0.00 0.00 3.16
193 194 9.490083 AATAGTAGTGTAAGTATTTCCCTCAGT 57.510 33.333 0.00 0.00 0.00 3.41
194 195 9.751542 CAATAGTAGTGTAAGTATTTCCCTCAG 57.248 37.037 0.00 0.00 0.00 3.35
195 196 9.263446 ACAATAGTAGTGTAAGTATTTCCCTCA 57.737 33.333 0.43 0.00 0.00 3.86
197 198 9.886132 CAACAATAGTAGTGTAAGTATTTCCCT 57.114 33.333 3.27 0.00 0.00 4.20
198 199 8.610035 GCAACAATAGTAGTGTAAGTATTTCCC 58.390 37.037 3.27 0.00 0.00 3.97
199 200 9.158233 TGCAACAATAGTAGTGTAAGTATTTCC 57.842 33.333 3.27 0.00 0.00 3.13
202 203 9.884636 TGATGCAACAATAGTAGTGTAAGTATT 57.115 29.630 3.27 0.00 0.00 1.89
203 204 9.314321 GTGATGCAACAATAGTAGTGTAAGTAT 57.686 33.333 3.27 5.22 0.00 2.12
204 205 7.762615 GGTGATGCAACAATAGTAGTGTAAGTA 59.237 37.037 3.27 0.45 0.00 2.24
205 206 6.594159 GGTGATGCAACAATAGTAGTGTAAGT 59.406 38.462 3.27 0.00 0.00 2.24
206 207 6.037172 GGGTGATGCAACAATAGTAGTGTAAG 59.963 42.308 3.27 1.54 0.00 2.34
207 208 5.878116 GGGTGATGCAACAATAGTAGTGTAA 59.122 40.000 3.27 0.00 0.00 2.41
208 209 5.188948 AGGGTGATGCAACAATAGTAGTGTA 59.811 40.000 3.27 0.00 0.00 2.90
209 210 4.019321 AGGGTGATGCAACAATAGTAGTGT 60.019 41.667 0.00 0.00 0.00 3.55
210 211 4.517285 AGGGTGATGCAACAATAGTAGTG 58.483 43.478 0.00 0.00 0.00 2.74
211 212 4.844349 AGGGTGATGCAACAATAGTAGT 57.156 40.909 0.00 0.00 0.00 2.73
212 213 5.066505 GGAAAGGGTGATGCAACAATAGTAG 59.933 44.000 0.00 0.00 0.00 2.57
213 214 4.947388 GGAAAGGGTGATGCAACAATAGTA 59.053 41.667 0.00 0.00 0.00 1.82
214 215 3.763897 GGAAAGGGTGATGCAACAATAGT 59.236 43.478 0.00 0.00 0.00 2.12
215 216 4.019174 AGGAAAGGGTGATGCAACAATAG 58.981 43.478 0.00 0.00 0.00 1.73
216 217 4.016444 GAGGAAAGGGTGATGCAACAATA 58.984 43.478 0.00 0.00 0.00 1.90
217 218 2.827921 GAGGAAAGGGTGATGCAACAAT 59.172 45.455 0.00 0.00 0.00 2.71
218 219 2.158475 AGAGGAAAGGGTGATGCAACAA 60.158 45.455 0.00 0.00 0.00 2.83
219 220 1.425066 AGAGGAAAGGGTGATGCAACA 59.575 47.619 0.00 0.00 0.00 3.33
220 221 2.206576 AGAGGAAAGGGTGATGCAAC 57.793 50.000 0.00 0.00 0.00 4.17
221 222 2.108075 TGAAGAGGAAAGGGTGATGCAA 59.892 45.455 0.00 0.00 0.00 4.08
222 223 1.704628 TGAAGAGGAAAGGGTGATGCA 59.295 47.619 0.00 0.00 0.00 3.96
223 224 2.496899 TGAAGAGGAAAGGGTGATGC 57.503 50.000 0.00 0.00 0.00 3.91
236 237 5.744666 TTACGTTGGTTTTCCTTGAAGAG 57.255 39.130 0.00 0.00 41.38 2.85
237 238 4.035909 GCTTACGTTGGTTTTCCTTGAAGA 59.964 41.667 0.00 0.00 41.38 2.87
238 239 4.036380 AGCTTACGTTGGTTTTCCTTGAAG 59.964 41.667 0.00 0.00 41.38 3.02
239 240 3.949113 AGCTTACGTTGGTTTTCCTTGAA 59.051 39.130 0.00 0.00 41.38 2.69
240 241 3.547746 AGCTTACGTTGGTTTTCCTTGA 58.452 40.909 0.00 0.00 41.38 3.02
241 242 3.314080 TGAGCTTACGTTGGTTTTCCTTG 59.686 43.478 0.00 0.00 41.38 3.61
242 243 3.547746 TGAGCTTACGTTGGTTTTCCTT 58.452 40.909 0.00 0.00 41.38 3.36
243 244 3.202829 TGAGCTTACGTTGGTTTTCCT 57.797 42.857 0.00 0.00 41.38 3.36
244 245 3.562557 TCTTGAGCTTACGTTGGTTTTCC 59.437 43.478 0.00 0.00 41.14 3.13
245 246 4.524749 GTCTTGAGCTTACGTTGGTTTTC 58.475 43.478 0.00 0.00 0.00 2.29
246 247 3.001939 CGTCTTGAGCTTACGTTGGTTTT 59.998 43.478 0.00 0.00 32.16 2.43
247 248 2.542595 CGTCTTGAGCTTACGTTGGTTT 59.457 45.455 0.00 0.00 32.16 3.27
248 249 2.132762 CGTCTTGAGCTTACGTTGGTT 58.867 47.619 0.00 0.00 32.16 3.67
249 250 1.068127 ACGTCTTGAGCTTACGTTGGT 59.932 47.619 10.47 0.00 46.86 3.67
250 251 1.779569 ACGTCTTGAGCTTACGTTGG 58.220 50.000 10.47 0.00 46.86 3.77
251 252 2.341760 GCTACGTCTTGAGCTTACGTTG 59.658 50.000 18.24 17.05 46.86 4.10
252 253 2.030540 TGCTACGTCTTGAGCTTACGTT 60.031 45.455 18.24 7.20 46.86 3.99
254 255 2.257974 TGCTACGTCTTGAGCTTACG 57.742 50.000 9.31 9.41 39.54 3.18
255 256 5.749109 ACATAATGCTACGTCTTGAGCTTAC 59.251 40.000 9.31 0.00 39.54 2.34
256 257 5.902681 ACATAATGCTACGTCTTGAGCTTA 58.097 37.500 9.31 6.16 39.54 3.09
257 258 4.759782 ACATAATGCTACGTCTTGAGCTT 58.240 39.130 9.31 0.54 39.54 3.74
258 259 4.363999 GACATAATGCTACGTCTTGAGCT 58.636 43.478 9.31 0.00 39.54 4.09
259 260 3.491267 GGACATAATGCTACGTCTTGAGC 59.509 47.826 0.00 0.00 39.25 4.26
260 261 4.051922 GGGACATAATGCTACGTCTTGAG 58.948 47.826 0.00 0.00 0.00 3.02
261 262 3.449377 TGGGACATAATGCTACGTCTTGA 59.551 43.478 0.00 0.00 0.00 3.02
262 263 3.792401 TGGGACATAATGCTACGTCTTG 58.208 45.455 0.00 0.00 0.00 3.02
272 273 7.291516 GGGATACGAGTTCATGGGACATAATG 61.292 46.154 0.00 0.00 40.90 1.90
273 274 5.280011 GGGATACGAGTTCATGGGACATAAT 60.280 44.000 0.00 0.00 40.90 1.28
274 275 4.039973 GGGATACGAGTTCATGGGACATAA 59.960 45.833 0.00 0.00 40.90 1.90
275 276 3.576982 GGGATACGAGTTCATGGGACATA 59.423 47.826 0.00 0.00 40.90 2.29
276 277 2.368875 GGGATACGAGTTCATGGGACAT 59.631 50.000 0.00 0.00 40.90 3.06
277 278 1.760613 GGGATACGAGTTCATGGGACA 59.239 52.381 0.00 0.00 40.80 4.02
278 279 1.760613 TGGGATACGAGTTCATGGGAC 59.239 52.381 0.00 0.00 37.60 4.46
279 280 2.168458 TGGGATACGAGTTCATGGGA 57.832 50.000 0.00 0.00 37.60 4.37
280 281 4.826274 ATATGGGATACGAGTTCATGGG 57.174 45.455 0.00 0.00 37.60 4.00
281 282 7.112452 TGATATATGGGATACGAGTTCATGG 57.888 40.000 0.00 0.00 37.60 3.66
282 283 8.416329 TGATGATATATGGGATACGAGTTCATG 58.584 37.037 0.00 0.00 37.60 3.07
283 284 8.539117 TGATGATATATGGGATACGAGTTCAT 57.461 34.615 0.00 0.00 37.60 2.57
284 285 7.954666 TGATGATATATGGGATACGAGTTCA 57.045 36.000 0.00 0.00 37.60 3.18
285 286 9.823647 AATTGATGATATATGGGATACGAGTTC 57.176 33.333 0.00 0.00 37.60 3.01
286 287 9.605275 CAATTGATGATATATGGGATACGAGTT 57.395 33.333 0.00 0.00 37.60 3.01
287 288 7.712639 GCAATTGATGATATATGGGATACGAGT 59.287 37.037 10.34 0.00 37.60 4.18
288 289 7.095899 CGCAATTGATGATATATGGGATACGAG 60.096 40.741 10.34 0.00 37.60 4.18
289 290 6.701400 CGCAATTGATGATATATGGGATACGA 59.299 38.462 10.34 0.00 37.60 3.43
290 291 6.701400 TCGCAATTGATGATATATGGGATACG 59.299 38.462 10.34 0.00 37.60 3.06
291 292 8.501580 CATCGCAATTGATGATATATGGGATAC 58.498 37.037 10.34 0.00 46.98 2.24
292 293 8.611654 CATCGCAATTGATGATATATGGGATA 57.388 34.615 10.34 0.00 46.98 2.59
293 294 7.506328 CATCGCAATTGATGATATATGGGAT 57.494 36.000 10.34 0.00 46.98 3.85
294 295 6.930667 CATCGCAATTGATGATATATGGGA 57.069 37.500 10.34 0.00 46.98 4.37
304 305 3.470709 AGGTACCTCATCGCAATTGATG 58.529 45.455 9.21 5.18 45.70 3.07
305 306 3.845781 AGGTACCTCATCGCAATTGAT 57.154 42.857 9.21 0.00 0.00 2.57
306 307 4.955811 ATAGGTACCTCATCGCAATTGA 57.044 40.909 20.32 0.00 0.00 2.57
307 308 5.050091 GTCAATAGGTACCTCATCGCAATTG 60.050 44.000 20.32 19.50 0.00 2.32
308 309 5.057149 GTCAATAGGTACCTCATCGCAATT 58.943 41.667 20.32 7.89 0.00 2.32
309 310 4.100963 TGTCAATAGGTACCTCATCGCAAT 59.899 41.667 20.32 0.72 0.00 3.56
310 311 3.449377 TGTCAATAGGTACCTCATCGCAA 59.551 43.478 20.32 0.00 0.00 4.85
311 312 3.028130 TGTCAATAGGTACCTCATCGCA 58.972 45.455 20.32 10.79 0.00 5.10
312 313 3.728076 TGTCAATAGGTACCTCATCGC 57.272 47.619 20.32 8.16 0.00 4.58
313 314 5.163550 TGTCTTGTCAATAGGTACCTCATCG 60.164 44.000 20.32 5.94 0.00 3.84
314 315 6.222038 TGTCTTGTCAATAGGTACCTCATC 57.778 41.667 20.32 6.62 0.00 2.92
315 316 6.620877 TTGTCTTGTCAATAGGTACCTCAT 57.379 37.500 20.32 5.51 0.00 2.90
316 317 6.269077 TCTTTGTCTTGTCAATAGGTACCTCA 59.731 38.462 20.32 6.95 0.00 3.86
317 318 6.698380 TCTTTGTCTTGTCAATAGGTACCTC 58.302 40.000 20.32 3.85 0.00 3.85
318 319 6.295916 CCTCTTTGTCTTGTCAATAGGTACCT 60.296 42.308 20.57 20.57 31.72 3.08
319 320 5.875359 CCTCTTTGTCTTGTCAATAGGTACC 59.125 44.000 2.73 2.73 31.72 3.34
320 321 5.875359 CCCTCTTTGTCTTGTCAATAGGTAC 59.125 44.000 0.00 0.00 33.11 3.34
321 322 5.783360 TCCCTCTTTGTCTTGTCAATAGGTA 59.217 40.000 0.00 0.00 33.11 3.08
322 323 4.597507 TCCCTCTTTGTCTTGTCAATAGGT 59.402 41.667 0.00 0.00 33.11 3.08
323 324 5.165961 TCCCTCTTTGTCTTGTCAATAGG 57.834 43.478 0.00 0.00 33.95 2.57
324 325 4.633565 GCTCCCTCTTTGTCTTGTCAATAG 59.366 45.833 0.00 0.00 0.00 1.73
325 326 4.565652 GGCTCCCTCTTTGTCTTGTCAATA 60.566 45.833 0.00 0.00 0.00 1.90
326 327 3.416156 GCTCCCTCTTTGTCTTGTCAAT 58.584 45.455 0.00 0.00 0.00 2.57
327 328 2.487265 GGCTCCCTCTTTGTCTTGTCAA 60.487 50.000 0.00 0.00 0.00 3.18
328 329 1.072331 GGCTCCCTCTTTGTCTTGTCA 59.928 52.381 0.00 0.00 0.00 3.58
329 330 1.072331 TGGCTCCCTCTTTGTCTTGTC 59.928 52.381 0.00 0.00 0.00 3.18
330 331 1.140312 TGGCTCCCTCTTTGTCTTGT 58.860 50.000 0.00 0.00 0.00 3.16
331 332 2.503895 ATGGCTCCCTCTTTGTCTTG 57.496 50.000 0.00 0.00 0.00 3.02
332 333 3.454858 TCTATGGCTCCCTCTTTGTCTT 58.545 45.455 0.00 0.00 0.00 3.01
333 334 3.121929 TCTATGGCTCCCTCTTTGTCT 57.878 47.619 0.00 0.00 0.00 3.41
334 335 4.429854 AATCTATGGCTCCCTCTTTGTC 57.570 45.455 0.00 0.00 0.00 3.18
335 336 5.975988 TTAATCTATGGCTCCCTCTTTGT 57.024 39.130 0.00 0.00 0.00 2.83
336 337 6.830838 ACTTTTAATCTATGGCTCCCTCTTTG 59.169 38.462 0.00 0.00 0.00 2.77
337 338 6.974795 ACTTTTAATCTATGGCTCCCTCTTT 58.025 36.000 0.00 0.00 0.00 2.52
338 339 6.582929 ACTTTTAATCTATGGCTCCCTCTT 57.417 37.500 0.00 0.00 0.00 2.85
339 340 6.582929 AACTTTTAATCTATGGCTCCCTCT 57.417 37.500 0.00 0.00 0.00 3.69
340 341 7.280356 TGTAACTTTTAATCTATGGCTCCCTC 58.720 38.462 0.00 0.00 0.00 4.30
341 342 7.208064 TGTAACTTTTAATCTATGGCTCCCT 57.792 36.000 0.00 0.00 0.00 4.20
342 343 7.556635 AGTTGTAACTTTTAATCTATGGCTCCC 59.443 37.037 0.00 0.00 35.21 4.30
343 344 8.398665 CAGTTGTAACTTTTAATCTATGGCTCC 58.601 37.037 0.00 0.00 37.08 4.70
344 345 8.947115 ACAGTTGTAACTTTTAATCTATGGCTC 58.053 33.333 0.00 0.00 37.08 4.70
345 346 8.863872 ACAGTTGTAACTTTTAATCTATGGCT 57.136 30.769 0.00 0.00 37.08 4.75
360 361 7.690228 TCGCCAATCATTATAACAGTTGTAAC 58.310 34.615 4.74 0.00 0.00 2.50
373 374 3.572255 GCCCCTAAATTCGCCAATCATTA 59.428 43.478 0.00 0.00 0.00 1.90
375 376 1.963515 GCCCCTAAATTCGCCAATCAT 59.036 47.619 0.00 0.00 0.00 2.45
441 442 8.483307 TTCATGTAATTTTACTCCCGTAACTC 57.517 34.615 0.00 0.00 35.44 3.01
483 484 6.129179 CCCCACAATAATCTTGTAATGGTCT 58.871 40.000 0.00 0.00 0.00 3.85
501 502 3.464720 TGGAAAATGATTAGCCCCACA 57.535 42.857 0.00 0.00 0.00 4.17
548 549 3.031964 CTTTTCTCCCAGCGCTGCG 62.032 63.158 31.96 24.07 0.00 5.18
621 623 4.704103 ACGGCAGAGGAGGAGGCA 62.704 66.667 0.00 0.00 0.00 4.75
649 651 1.223487 GGGGAAGAAGTATGCGGCA 59.777 57.895 4.58 4.58 0.00 5.69
716 722 0.980423 GGAGAAGGCACAGGAGAAGT 59.020 55.000 0.00 0.00 0.00 3.01
794 800 1.965754 GCCTCCTCCGCTGAAGATGT 61.966 60.000 0.00 0.00 0.00 3.06
911 973 2.895404 GACTACAGTGTGGGTAAGGTCA 59.105 50.000 11.67 0.00 0.00 4.02
921 983 2.088763 CAGCGGCGACTACAGTGTG 61.089 63.158 12.98 0.00 0.00 3.82
952 1014 4.265056 GCCGGTGTCAACCTGGGT 62.265 66.667 1.90 0.00 45.17 4.51
1007 1072 1.422402 GGGAGGAGAGAGAGACCGTAT 59.578 57.143 0.00 0.00 0.00 3.06
1045 1551 6.564709 ATCAAATCAATACATGTCGGGATG 57.435 37.500 0.00 0.00 0.00 3.51
1132 1639 8.786898 ACAAAGCACAAATATATCGCATATCTT 58.213 29.630 0.00 0.00 0.00 2.40
1138 1645 4.568760 TCGACAAAGCACAAATATATCGCA 59.431 37.500 0.00 0.00 0.00 5.10
1145 1652 5.094812 GCATCAATCGACAAAGCACAAATA 58.905 37.500 0.00 0.00 0.00 1.40
1330 2186 7.496346 AGTGTAGATGATTTTGGTCCTTCTA 57.504 36.000 0.00 0.00 0.00 2.10
1394 2250 5.358725 TGAAAACTGTCACTTTCCTAAACCC 59.641 40.000 2.09 0.00 31.75 4.11
1882 2780 8.043113 AGAAAGATACTGACATATCAAGCACAA 58.957 33.333 0.00 0.00 34.50 3.33
2070 2968 7.692460 TCTGTGCAAATGTAGATGAAGAAAT 57.308 32.000 0.00 0.00 0.00 2.17
2210 3109 2.158623 TGCCATTGGAGTTCTTGACAGT 60.159 45.455 6.95 0.00 0.00 3.55
2350 3249 1.986757 GACTCCTCCCAGAGCTGCA 60.987 63.158 1.02 0.00 37.39 4.41
2604 3506 1.846007 TGTTGGTGTTCTTGCCTTGT 58.154 45.000 0.00 0.00 0.00 3.16
2605 3507 3.457610 AATGTTGGTGTTCTTGCCTTG 57.542 42.857 0.00 0.00 0.00 3.61
2606 3508 4.190772 CAAAATGTTGGTGTTCTTGCCTT 58.809 39.130 0.00 0.00 0.00 4.35
2674 3576 4.670992 CGAACATGAACATTTCTCTGCTGG 60.671 45.833 0.00 0.00 0.00 4.85
2736 3638 0.107703 GAGTTGGCCATGATGTCCGA 60.108 55.000 6.09 0.00 0.00 4.55
2759 3661 1.451028 GCAGCTCACCATCACTCCC 60.451 63.158 0.00 0.00 0.00 4.30
2818 3720 1.078497 AATGGCAGCGTGATCCGAA 60.078 52.632 7.64 0.00 39.56 4.30
2819 3721 1.815003 CAATGGCAGCGTGATCCGA 60.815 57.895 7.64 0.00 39.56 4.55
2836 3738 4.169696 CCGGCCTGGATTACGCCA 62.170 66.667 7.77 0.00 43.17 5.69
2889 3792 9.250246 AGGAATAAGGTAGAGTAAGAGATATGC 57.750 37.037 0.00 0.00 0.00 3.14
2926 3829 3.754965 ACTGAAGAGTAATGCAAAGCCA 58.245 40.909 0.00 0.00 0.00 4.75
3235 4142 5.685520 TGGGTTGTGTGCTGAATATAGTA 57.314 39.130 0.00 0.00 0.00 1.82
3413 4397 0.104120 TGTCGGCATCCATAAGTCGG 59.896 55.000 0.00 0.00 0.00 4.79
3637 4641 3.561725 GGCATCAACAAGTAGATGTAGCC 59.438 47.826 0.00 0.00 42.72 3.93
3686 4690 3.084786 GGTGAAACATAAGAAGGCAGCT 58.915 45.455 0.00 0.00 39.98 4.24
3687 4691 2.819608 TGGTGAAACATAAGAAGGCAGC 59.180 45.455 0.00 0.00 39.98 5.25
3734 4738 5.392995 TCACTTTCCCCTCAATCAAATCAA 58.607 37.500 0.00 0.00 0.00 2.57
3812 4816 5.948992 AACTAGTTTCAATCAGGTGCTTC 57.051 39.130 1.12 0.00 0.00 3.86
3965 4969 6.733807 TCCTCAGGGTCCTCTTTTATCTTTTA 59.266 38.462 0.00 0.00 0.00 1.52
3984 5015 2.125350 GACCTTGCCGCTCCTCAG 60.125 66.667 0.00 0.00 0.00 3.35
4052 5083 5.067954 CCAAGATATGCAATCATCAGTCCA 58.932 41.667 0.00 0.00 34.22 4.02
4236 5299 4.641989 GTCCAGTGGCATAATCACAAGAAT 59.358 41.667 3.51 0.00 37.58 2.40
4354 5443 3.511146 GCAACCATCCTTCCAAATTGAGA 59.489 43.478 0.00 0.00 0.00 3.27
4481 5570 2.959465 AGGGGCCATACTTATTCTGC 57.041 50.000 4.39 0.00 0.00 4.26
4516 5605 0.110238 GTTGTGCACGCGAACATGAT 60.110 50.000 15.93 0.00 0.00 2.45
4643 5780 9.142014 AGATGTCACATCTAGCTTTACTCTAAT 57.858 33.333 19.29 0.00 0.00 1.73
4760 5906 4.159693 AGAGTTGGTACATTGCAGATCGTA 59.840 41.667 0.00 0.00 39.30 3.43
4765 5911 4.065088 GACAAGAGTTGGTACATTGCAGA 58.935 43.478 0.00 0.00 39.30 4.26
4801 5947 9.398538 GGAACACCATGTACCATTTTTATACTA 57.601 33.333 0.00 0.00 0.00 1.82
4852 5998 2.130193 TCAAATGCCAGCCTCTCCTAT 58.870 47.619 0.00 0.00 0.00 2.57
4880 6026 5.507817 CCAGTAGTCAATGCACACACAAAAT 60.508 40.000 0.00 0.00 0.00 1.82
4909 6055 4.892934 TCCACAAGAAAAATTACAGGCTGT 59.107 37.500 25.34 25.34 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.